AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0585620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 108 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACTTAGGTTTCTCCTTT+TGG 0.146662 4_2:+6679039 Msa0585620:three_prime_UTR
CACAAGGGAGTTGAACTTAA+AGG 0.189198 4_2:+6682453 Msa0585620:three_prime_UTR
CCACCCCACTGATGTGAATT+TGG 0.205809 4_2:-6677758 None:intergenic
AGTTTCGAAAACAGCTTATT+AGG 0.236464 4_2:-6677730 None:intergenic
CCTTACAAGTTACAACAATT+AGG 0.258445 4_2:-6678064 None:intergenic
GAACAGTTGACAGCTCTTAT+AGG 0.269766 4_2:+6682204 Msa0585620:three_prime_UTR
AAGTATGTATGGTGCAATTT+AGG 0.269865 4_2:+6682299 Msa0585620:three_prime_UTR
ATGCTGTTGCTTCATGGACT+TGG 0.279744 4_2:+6680935 Msa0585620:three_prime_UTR
ACAGAACTTTGATGTTCTTT+AGG 0.289110 4_2:+6682175 Msa0585620:three_prime_UTR
CGTCGGGAATGGCAATTTAA+AGG 0.290239 4_2:+6681912 Msa0585620:three_prime_UTR
CTTACAAGTTACAACAATTA+GGG 0.315535 4_2:-6678063 None:intergenic
ATGTAATGCTCCCTTGTAAA+AGG 0.316294 4_2:-6682424 None:intergenic
GATACTACTGAGGGGTATTA+TGG 0.324915 4_2:-6677814 None:intergenic
TTCAATCCATGCCAACAAAA+AGG 0.331188 4_2:-6682096 None:intergenic
ATTTGCATTGTATCTTGAAA+TGG 0.352612 4_2:+6681850 Msa0585620:three_prime_UTR
AATCGATTTCAATAACTTCA+TGG 0.354986 4_2:-6682006 None:intergenic
AAATTCATGTATGTTCTTAG+TGG 0.357460 4_2:+6682362 Msa0585620:three_prime_UTR
ACAAGGGAGTTGAACTTAAA+GGG 0.370928 4_2:+6682454 Msa0585620:three_prime_UTR
CCTAATTGTTGTAACTTGTA+AGG 0.390094 4_2:+6678064 Msa0585620:five_prime_UTR
GTGGTCGCGTTGCTTGGTCT+TGG 0.395537 4_2:-6677909 None:intergenic
TGTCCTGATTGTAAACTTCC+CGG 0.396496 4_2:+6681009 Msa0585620:three_prime_UTR
GATGGCATGCTGTTGCTTCA+TGG 0.397141 4_2:+6680929 Msa0585620:intron
GCCATTCCCGACGGCACATT+GGG 0.397444 4_2:-6681902 None:intergenic
ATTTGTAGGATGGCCTTTGA+TGG 0.411828 4_2:+6680982 Msa0585620:three_prime_UTR
TGCTGTTGCTTCATGGACTT+GGG 0.419431 4_2:+6680936 Msa0585620:three_prime_UTR
TCCTCCTCCATCTTCTGCAT+TGG 0.420963 4_2:+6678000 Msa0585620:five_prime_UTR
ATGAAACATGTGGGATTTGT+AGG 0.429235 4_2:+6680968 Msa0585620:three_prime_UTR
CTTTCCACTATAGTAATGCT+TGG 0.436861 4_2:+6682227 Msa0585620:three_prime_UTR
CCTCCCAAGCATTACTATAG+TGG 0.437090 4_2:-6682231 None:intergenic
GGAGGAGGATGCGGCGGTGA+TGG 0.440552 4_2:-6677986 None:intergenic
GTTACAACAATTAGGGTTTG+TGG 0.445339 4_2:-6678056 None:intergenic
TGCCATTCCCGACGGCACAT+TGG 0.451421 4_2:-6681903 None:intergenic
GAGGATGCGGCGGTGATGGA+TGG 0.452516 4_2:-6677982 None:intergenic
GTCGTGTGGTGGTGGATGGA+TGG 0.452673 4_2:-6677935 None:intergenic
TCACATCAGTGGGGTGGCAA+GGG 0.454366 4_2:+6677764 Msa0585620:five_prime_UTR
ATCGATTTCAATAACTTCAT+GGG 0.455407 4_2:-6682005 None:intergenic
CTATGAAAGTGAGTTCTCAT+TGG 0.457083 4_2:-6682271 None:intergenic
TGGAGAGTGGTCGCGTTGCT+TGG 0.459797 4_2:-6677915 None:intergenic
GATGAAAGAGAAAGGGGAAG+AGG 0.461115 4_2:-6677861 None:intergenic
ACTGAGCGGGCAGTCATCCC+CGG 0.466023 4_2:-6681028 None:intergenic
TTCACATCAGTGGGGTGGCA+AGG 0.469939 4_2:+6677763 Msa0585620:five_prime_UTR
TGAAGAACCAATGCAGAAGA+TGG 0.471925 4_2:-6678007 None:intergenic
GTCCTGATTGTAAACTTCCC+GGG 0.472599 4_2:+6681010 Msa0585620:three_prime_UTR
AAATTAGAGAGTTTCTAGAT+TGG 0.480375 4_2:+6682117 Msa0585620:three_prime_UTR
GCCCAATGTGCCGTCGGGAA+TGG 0.481653 4_2:+6681901 Msa0585620:three_prime_UTR
TTTGCATTGTATCTTGAAAT+GGG 0.482104 4_2:+6681851 Msa0585620:three_prime_UTR
AGGAATTGAAGAATAATGAA+AGG 0.489989 4_2:-6678878 None:intergenic
GGTTCCAAATTCACATCAGT+GGG 0.490060 4_2:+6677754 Msa0585620:five_prime_UTR
TCATAGTAACCAAGTATGTA+TGG 0.490510 4_2:+6682288 Msa0585620:three_prime_UTR
CTATTAACCTTTGAAGGACG+AGG 0.493544 4_2:-6678734 None:intergenic
TAAATTGCACCATACATACT+TGG 0.500327 4_2:-6682297 None:intergenic
GCAGAAGATGGAGGAGGATG+CGG 0.504457 4_2:-6677995 None:intergenic
TTTCCACTATAGTAATGCTT+GGG 0.505263 4_2:+6682228 Msa0585620:three_prime_UTR
TCATGTATGTTCTTAGTGGA+TGG 0.505573 4_2:+6682366 Msa0585620:three_prime_UTR
GGCGGTCGTGTGGTGGTGGA+TGG 0.505870 4_2:-6677939 None:intergenic
TCGCGGCGGTCGTGTGGTGG+TGG 0.510950 4_2:-6677943 None:intergenic
TAATTTCAAGTATATAAAGA+TGG 0.512647 4_2:-6677791 None:intergenic
GGAATTGAAGAATAATGAAA+GGG 0.513386 4_2:-6678877 None:intergenic
TGTGAAGCAAAAGAACAAAC+AGG 0.515048 4_2:-6678920 None:intergenic
CACATTGCCCAATGTGCCGT+CGG 0.515957 4_2:+6681895 Msa0585620:three_prime_UTR
TCCCCGGGAAGTTTACAATC+AGG 0.518100 4_2:-6681012 None:intergenic
AATTGGGTATTTGCAGAACA+TGG 0.518144 4_2:+6679002 Msa0585620:exon
AGATCAGCAGATATCCCAAA+AGG 0.525089 4_2:-6679054 None:intergenic
GTATGTTCTTAGTGGATGGA+AGG 0.529304 4_2:+6682370 Msa0585620:three_prime_UTR
AGTAATGCTTGGGAGGATCA+TGG 0.536744 4_2:+6682238 Msa0585620:three_prime_UTR
CTTTAAATTGCCATTCCCGA+CGG 0.544857 4_2:-6681911 None:intergenic
CACATCAGTGGGGTGGCAAG+GGG 0.544922 4_2:+6677765 Msa0585620:five_prime_UTR
GTAATATGCAAAATTGAAAG+AGG 0.548783 4_2:-6678898 None:intergenic
CATTGGGCAATGTGCTTGTG+AGG 0.551130 4_2:-6681886 None:intergenic
AAGTTCAACTCCCTTGTGAA+AGG 0.552069 4_2:-6682448 None:intergenic
GTCAATATTGATACTACTGA+GGG 0.553883 4_2:-6677823 None:intergenic
CCACTATAGTAATGCTTGGG+AGG 0.554802 4_2:+6682231 Msa0585620:three_prime_UTR
AAATGAACCTCGTCCTTCAA+AGG 0.555109 4_2:+6678727 Msa0585620:five_prime_UTR
ACATTGCCCAATGTGCCGTC+GGG 0.562769 4_2:+6681896 Msa0585620:three_prime_UTR
GAGTGATCGCGGCGGTCGTG+TGG 0.564527 4_2:-6677949 None:intergenic
CTGAGCGGGCAGTCATCCCC+GGG 0.565342 4_2:-6681027 None:intergenic
GCGGCGGTGATGGATGGAGA+AGG 0.567174 4_2:-6677976 None:intergenic
AAAGAACATCAAAGTTCTGT+CGG 0.568381 4_2:-6682172 None:intergenic
TCCTGATTGTAAACTTCCCG+GGG 0.576107 4_2:+6681011 Msa0585620:three_prime_UTR
TTAGCAGTAGCTTACTGAGC+GGG 0.577553 4_2:-6681041 None:intergenic
TGGTTCCAAATTCACATCAG+TGG 0.579966 4_2:+6677753 Msa0585620:five_prime_UTR
GGTGGTGGATGGATGGAGAG+TGG 0.581683 4_2:-6677928 None:intergenic
AATTTCAAGTATATAAAGAT+GGG 0.584329 4_2:-6677790 None:intergenic
TATGTTCTTAGTGGATGGAA+GGG 0.586764 4_2:+6682371 Msa0585620:three_prime_UTR
AGGGAATTGAAATATTGAGA+AGG 0.589415 4_2:-6678858 None:intergenic
ACCAATGCAGAAGATGGAGG+AGG 0.595744 4_2:-6678001 None:intergenic
TGATCGCGGCGGTCGTGTGG+TGG 0.596215 4_2:-6677946 None:intergenic
ATACAAACGATCAAATTACA+TGG 0.596376 4_2:-6682034 None:intergenic
GCGGTGATGGATGGAGAAGG+AGG 0.610844 4_2:-6677973 None:intergenic
ATCAGGACAACATCCATCAA+AGG 0.626104 4_2:-6680995 None:intergenic
AGCATTACATACCTTTCACA+AGG 0.628423 4_2:+6682437 Msa0585620:three_prime_UTR
GAAGATGGAGGAGGATGCGG+CGG 0.630764 4_2:-6677992 None:intergenic
AGAACCAATGCAGAAGATGG+AGG 0.632022 4_2:-6678004 None:intergenic
TGTCAATATTGATACTACTG+AGG 0.639787 4_2:-6677824 None:intergenic
CCAAATTCACATCAGTGGGG+TGG 0.641715 4_2:+6677758 Msa0585620:five_prime_UTR
TTGGGAGGATCATGGTAACA+AGG 0.646956 4_2:+6682246 Msa0585620:three_prime_UTR
GAGAAGGAGGAGAGTGATCG+CGG 0.648912 4_2:-6677960 None:intergenic
ATCTCTGTGATGTGAATCAG+TGG 0.650177 4_2:-6678814 None:intergenic
ACATCAGTGGGGTGGCAAGG+GGG 0.651118 4_2:+6677766 Msa0585620:five_prime_UTR
AACATGTGGGATTTGTAGGA+TGG 0.654714 4_2:+6680972 Msa0585620:three_prime_UTR
TTTAAAGGTTGAGAGCACAT+CGG 0.694935 4_2:+6681927 Msa0585620:three_prime_UTR
GATGCACAAGATGAAACATG+TGG 0.720145 4_2:+6680958 Msa0585620:three_prime_UTR
GCATTACATACCTTTCACAA+GGG 0.723460 4_2:+6682438 Msa0585620:three_prime_UTR
ATGCACAAGATGAAACATGT+GGG 0.725526 4_2:+6680959 Msa0585620:three_prime_UTR
TCTGTGATGTGAATCAGTGG+CGG 0.733896 4_2:-6678811 None:intergenic
GTTCCAAATTCACATCAGTG+GGG 0.747366 4_2:+6677755 Msa0585620:five_prime_UTR
AAGGAGGAGAGTGATCGCGG+CGG 0.760184 4_2:-6677957 None:intergenic
TCAATATTGATACTACTGAG+GGG 0.761972 4_2:-6677822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTGAATGTAATAATT+TGG + chr4_2:6678257-6678276 Msa0585620:intron 10.0%
!! TTAATTGAATGTAATAATTT+GGG + chr4_2:6678258-6678277 Msa0585620:intron 10.0%
!!! ATTGTAAGTTTTTATTTTTT+TGG + chr4_2:6678455-6678474 Msa0585620:intron 10.0%
!!! TTTCAATTTTTTTTATGAAT+TGG + chr4_2:6678985-6679004 Msa0585620:exon 10.0%
!!! TTCAATTTTTTTTATGAATT+GGG + chr4_2:6678986-6679005 Msa0585620:exon 10.0%
!!! AGGAATAATATAATTTTTAA+GGG + chr4_2:6679626-6679645 Msa0585620:intron 10.0%
!!! AATTTTAATCAAAATTTTGT+TGG + chr4_2:6680611-6680630 Msa0585620:intron 10.0%
!!! AATTTCAAGTATATAAAGAT+GGG - chr4_2:6677793-6677812 None:intergenic 15.0%
!!! TAATTTCAAGTATATAAAGA+TGG - chr4_2:6677794-6677813 None:intergenic 15.0%
!! ATATTTATTGAGTATATGTT+TGG + chr4_2:6679372-6679391 Msa0585620:intron 15.0%
!! TATAAATAAGAAAGTAATCA+AGG + chr4_2:6679556-6679575 Msa0585620:intron 15.0%
!! ATAAATAAGAAAGTAATCAA+GGG + chr4_2:6679557-6679576 Msa0585620:intron 15.0%
!!! GAGGAATAATATAATTTTTA+AGG + chr4_2:6679625-6679644 Msa0585620:intron 15.0%
!! AATCATAAAAAAAGAAATGT+CGG - chr4_2:6679731-6679750 None:intergenic 15.0%
!! GAAATTAAAAAGATAGAAAA+TGG - chr4_2:6680241-6680260 None:intergenic 15.0%
!! CTAATTATATGTAATAACAA+AGG + chr4_2:6680556-6680575 Msa0585620:intron 15.0%
!! GTAGTTTCATAAATATAATT+AGG + chr4_2:6681451-6681470 Msa0585620:intron 15.0%
!! TTCAATTAAAGAACAACAAA+TGG - chr4_2:6678230-6678249 None:intergenic 20.0%
!! TTTATATGTTAAGAATGAAG+AGG + chr4_2:6678421-6678440 Msa0585620:intron 20.0%
!! TTATATGTTAAGAATGAAGA+GGG + chr4_2:6678422-6678441 Msa0585620:intron 20.0%
!!! AATTTTGTTTTTCTTGACTT+AGG + chr4_2:6679026-6679045 Msa0585620:three_prime_UTR 20.0%
!!! ATTGTATGTTTTTGTTACAA+TGG + chr4_2:6679141-6679160 Msa0585620:intron 20.0%
!! ATATGTATTTAAGCATGTAT+GGG - chr4_2:6679198-6679217 None:intergenic 20.0%
!!! ACATTTTTATTGAAATCAAG+TGG + chr4_2:6679293-6679312 Msa0585620:intron 20.0%
!!! CATTTTTATTGAAATCAAGT+GGG + chr4_2:6679294-6679313 Msa0585620:intron 20.0%
!! TAAATAAGAAAGTAATCAAG+GGG + chr4_2:6679558-6679577 Msa0585620:intron 20.0%
!!! GACATTTCTTTTTTTATGAT+TGG + chr4_2:6679730-6679749 Msa0585620:intron 20.0%
!!! GTTTTTTTGTGTTAGTTTTT+TGG + chr4_2:6680182-6680201 Msa0585620:intron 20.0%
!!! TGATTCTGTAAAAATGATTT+TGG - chr4_2:6680508-6680527 None:intergenic 20.0%
!! ACATATAATTAGTGTGTATT+TGG - chr4_2:6680548-6680567 None:intergenic 20.0%
!!! ACTGAAAATTTGAAATTACT+AGG - chr4_2:6680842-6680861 None:intergenic 20.0%
!! TATTTGCATAAATTTGTCTT+TGG + chr4_2:6681095-6681114 Msa0585620:intron 20.0%
!!! TCAGTTCATTTCTAATTTTT+CGG + chr4_2:6681392-6681411 Msa0585620:intron 20.0%
!!! TTATAAAAGCTTTATTCTCA+AGG + chr4_2:6681521-6681540 Msa0585620:intron 20.0%
!!! GTAATTGACAATTCTATTTT+GGG + chr4_2:6681597-6681616 Msa0585620:intron 20.0%
!!! TACTAAATAATCCTTTTACA+AGG + chr4_2:6682413-6682432 Msa0585620:three_prime_UTR 20.0%
!!! ACTAAATAATCCTTTTACAA+GGG + chr4_2:6682414-6682433 Msa0585620:three_prime_UTR 20.0%
! CTTACAAGTTACAACAATTA+GGG - chr4_2:6678066-6678085 None:intergenic 25.0%
! AGATGTTTCAATGCAATAAT+TGG - chr4_2:6678293-6678312 None:intergenic 25.0%
! AATAAATTTGGCATAAACTG+TGG - chr4_2:6678375-6678394 None:intergenic 25.0%
! TAAAAACTTACAATTCATCC+TGG - chr4_2:6678449-6678468 None:intergenic 25.0%
! TCTTTCTATACTTCTGATAA+TGG + chr4_2:6678591-6678610 Msa0585620:intron 25.0%
!! CATTTTCTATTAACCTTTGA+AGG - chr4_2:6678743-6678762 None:intergenic 25.0%
!! ATGAACTTGAACAATTTTGA+TGG + chr4_2:6678760-6678779 Msa0585620:CDS 25.0%
! GGAATTGAAGAATAATGAAA+GGG - chr4_2:6678880-6678899 None:intergenic 25.0%
! AGGAATTGAAGAATAATGAA+AGG - chr4_2:6678881-6678900 None:intergenic 25.0%
! GTAATATGCAAAATTGAAAG+AGG - chr4_2:6678901-6678920 None:intergenic 25.0%
!! ATTTAGGATTAGGATTACAA+TGG + chr4_2:6679172-6679191 Msa0585620:intron 25.0%
! GATATGTATTTAAGCATGTA+TGG - chr4_2:6679199-6679218 None:intergenic 25.0%
!! AATAGTTGCAAAGATGTTTT+AGG + chr4_2:6679243-6679262 Msa0585620:intron 25.0%
!! ATAGTTGCAAAGATGTTTTA+GGG + chr4_2:6679244-6679263 Msa0585620:intron 25.0%
! TTAATTGTTCTCTTGTGATT+TGG + chr4_2:6679433-6679452 Msa0585620:intron 25.0%
!!! TCTTTTTTTATGATTGGTGT+TGG + chr4_2:6679736-6679755 Msa0585620:intron 25.0%
!!! CTTTTTTTATGATTGGTGTT+GGG + chr4_2:6679737-6679756 Msa0585620:intron 25.0%
! AAAGCAAAAATCAATTCTAG+AGG - chr4_2:6680358-6680377 None:intergenic 25.0%
! ATGTTGAATGATAAATCCAA+GGG - chr4_2:6680422-6680441 None:intergenic 25.0%
! AATGTTGAATGATAAATCCA+AGG - chr4_2:6680423-6680442 None:intergenic 25.0%
!! AAGGTAAAGTGATTTTTGTT+TGG - chr4_2:6680471-6680490 None:intergenic 25.0%
! ATGTAATAACAAAGGTTGTA+TGG + chr4_2:6680564-6680583 Msa0585620:intron 25.0%
!! AATGGTCTAATAGTTTTCTT+AGG - chr4_2:6680689-6680708 None:intergenic 25.0%
!!! TGTTGTTGTTGTATTTTTGT+TGG + chr4_2:6680815-6680834 Msa0585620:intron 25.0%
!!! GTTGTTGTTGTATTTTTGTT+GGG + chr4_2:6680816-6680835 Msa0585620:intron 25.0%
!! AACTAAAAGTCTCTTTTCTA+AGG - chr4_2:6681262-6681281 None:intergenic 25.0%
!!! TAATTTTTCGGAATGTAGAT+AGG + chr4_2:6681404-6681423 Msa0585620:intron 25.0%
! AAACTACAAATGATGTTTAG+AGG - chr4_2:6681438-6681457 None:intergenic 25.0%
! TGAAAAATTCTCAATTATGC+AGG - chr4_2:6681561-6681580 None:intergenic 25.0%
! AATTGTCAATTACCATCTTA+TGG - chr4_2:6681590-6681609 None:intergenic 25.0%
!! GGTAATTGACAATTCTATTT+TGG + chr4_2:6681596-6681615 Msa0585620:intron 25.0%
! AGAATCATATTTGATCAGTT+AGG - chr4_2:6681749-6681768 None:intergenic 25.0%
! ATTTGCATTGTATCTTGAAA+TGG + chr4_2:6681850-6681869 Msa0585620:three_prime_UTR 25.0%
! TTTGCATTGTATCTTGAAAT+GGG + chr4_2:6681851-6681870 Msa0585620:three_prime_UTR 25.0%
!! ATTCTTTTTCTTGACAAACT+AGG + chr4_2:6681956-6681975 Msa0585620:three_prime_UTR 25.0%
!! TTCTTTTTCTTGACAAACTA+GGG + chr4_2:6681957-6681976 Msa0585620:three_prime_UTR 25.0%
!! ATCGATTTCAATAACTTCAT+GGG - chr4_2:6682008-6682027 None:intergenic 25.0%
!! AATCGATTTCAATAACTTCA+TGG - chr4_2:6682009-6682028 None:intergenic 25.0%
! ATACAAACGATCAAATTACA+TGG - chr4_2:6682037-6682056 None:intergenic 25.0%
!! TACTTCAATATCCTTTTTGT+TGG + chr4_2:6682085-6682104 Msa0585620:three_prime_UTR 25.0%
!! AAATTAGAGAGTTTCTAGAT+TGG + chr4_2:6682117-6682136 Msa0585620:three_prime_UTR 25.0%
! AAATTCATGTATGTTCTTAG+TGG + chr4_2:6682362-6682381 Msa0585620:three_prime_UTR 25.0%
AGTTTCGAAAACAGCTTATT+AGG - chr4_2:6677733-6677752 None:intergenic 30.0%
!! AATAAGCTGTTTTCGAAACT+TGG + chr4_2:6677733-6677752 Msa0585620:five_prime_UTR 30.0%
TCAATATTGATACTACTGAG+GGG - chr4_2:6677825-6677844 None:intergenic 30.0%
GTCAATATTGATACTACTGA+GGG - chr4_2:6677826-6677845 None:intergenic 30.0%
TGTCAATATTGATACTACTG+AGG - chr4_2:6677827-6677846 None:intergenic 30.0%
! TTTTCAGATGAAAGAGAAAG+GGG - chr4_2:6677870-6677889 None:intergenic 30.0%
! GTTTTCAGATGAAAGAGAAA+GGG - chr4_2:6677871-6677890 None:intergenic 30.0%
! TGTTTTCAGATGAAAGAGAA+AGG - chr4_2:6677872-6677891 None:intergenic 30.0%
CCTTACAAGTTACAACAATT+AGG - chr4_2:6678067-6678086 None:intergenic 30.0%
! CCTAATTGTTGTAACTTGTA+AGG + chr4_2:6678064-6678083 Msa0585620:five_prime_UTR 30.0%
AACAACAGATGGAAAAATCA+TGG - chr4_2:6678165-6678184 None:intergenic 30.0%
TGCCAAATTTATTCTGATTC+TGG + chr4_2:6678382-6678401 Msa0585620:intron 30.0%
GTCCAGAATCAGAATAAATT+TGG - chr4_2:6678387-6678406 None:intergenic 30.0%
TATTCTGATTCTGGACTAAT+TGG + chr4_2:6678391-6678410 Msa0585620:intron 30.0%
! TGTAATCTTAGATTGGTTCA+AGG + chr4_2:6678536-6678555 Msa0585620:intron 30.0%
!! TCTATACTTCTGATAATGGT+AGG + chr4_2:6678595-6678614 Msa0585620:intron 30.0%
ATGAAACAAAGATACCTTAC+TGG - chr4_2:6678643-6678662 None:intergenic 30.0%
!! AACTTGAACAATTTTGATGG+CGG + chr4_2:6678763-6678782 Msa0585620:CDS 30.0%
AGGGAATTGAAATATTGAGA+AGG - chr4_2:6678861-6678880 None:intergenic 30.0%
TACAATGGAATGTCTGATTT+AGG + chr4_2:6679156-6679175 Msa0585620:intron 30.0%
TTTAGGGATTGATACAACAT+TGG + chr4_2:6679260-6679279 Msa0585620:intron 30.0%
TTTATTGAAATCAAGTGGGA+AGG + chr4_2:6679298-6679317 Msa0585620:intron 30.0%
!! TATATGTTTGGTTCCACTTT+TGG + chr4_2:6679384-6679403 Msa0585620:intron 30.0%
TCAAGGGGTTATGATTAATT+TGG + chr4_2:6679573-6679592 Msa0585620:intron 30.0%
! TAATTTGGCTCACAACAATT+TGG + chr4_2:6679588-6679607 Msa0585620:intron 30.0%
! AATTTGGCTCACAACAATTT+GGG + chr4_2:6679589-6679608 Msa0585620:intron 30.0%
!! TCACAACAATTTGGGTTTTA+TGG + chr4_2:6679597-6679616 Msa0585620:intron 30.0%
!!! TTTTAAGGGTGTCAATTATG+AGG + chr4_2:6679640-6679659 Msa0585620:intron 30.0%
TTATGAGGTAGATGAAATTG+TGG + chr4_2:6679655-6679674 Msa0585620:intron 30.0%
AGGGTAATAATCAATTCTCA+AGG - chr4_2:6680403-6680422 None:intergenic 30.0%
TGAGAATTGATTATTACCCT+TGG + chr4_2:6680403-6680422 Msa0585620:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr4_2:6680639-6680658 Msa0585620:intron 30.0%
! CATGACTAAGTCTTTTCTAA+TGG - chr4_2:6680707-6680726 None:intergenic 30.0%
TGTTCTATCAAAGACCATAT+TGG - chr4_2:6680738-6680757 None:intergenic 30.0%
GTAAAGCTTAACTTCATAAC+TGG + chr4_2:6681168-6681187 Msa0585620:intron 30.0%
CTACAAAGATGTATTGTTAC+TGG + chr4_2:6681482-6681501 Msa0585620:intron 30.0%
!! AAGCTTTATTCTCAAGGAAT+TGG + chr4_2:6681527-6681546 Msa0585620:intron 30.0%
AATTCTCAAGCATGATTTCA+CGG - chr4_2:6681623-6681642 None:intergenic 30.0%
AAAGAACATCAAAGTTCTGT+CGG - chr4_2:6682175-6682194 None:intergenic 30.0%
ACAGAACTTTGATGTTCTTT+AGG + chr4_2:6682175-6682194 Msa0585620:three_prime_UTR 30.0%
TTTCCACTATAGTAATGCTT+GGG + chr4_2:6682228-6682247 Msa0585620:three_prime_UTR 30.0%
TCATAGTAACCAAGTATGTA+TGG + chr4_2:6682288-6682307 Msa0585620:three_prime_UTR 30.0%
TAAATTGCACCATACATACT+TGG - chr4_2:6682300-6682319 None:intergenic 30.0%
AAGTATGTATGGTGCAATTT+AGG + chr4_2:6682299-6682318 Msa0585620:three_prime_UTR 30.0%
!! GGTGCAATTTAGGATATTTT+CGG + chr4_2:6682309-6682328 Msa0585620:three_prime_UTR 30.0%
GTTACAACAATTAGGGTTTG+TGG - chr4_2:6678059-6678078 None:intergenic 35.0%
!!! AGTCATCTTTGTTTTGCCTT+TGG + chr4_2:6678326-6678345 Msa0585620:intron 35.0%
GGACTTGTGTAATCTTAGAT+TGG + chr4_2:6678529-6678548 Msa0585620:intron 35.0%
AAGATACCTTACTGGATTTG+TGG - chr4_2:6678635-6678654 None:intergenic 35.0%
TGTGAAGCAAAAGAACAAAC+AGG - chr4_2:6678923-6678942 None:intergenic 35.0%
AATTGGGTATTTGCAGAACA+TGG + chr4_2:6679002-6679021 Msa0585620:exon 35.0%
! TTGACTTAGGTTTCTCCTTT+TGG + chr4_2:6679039-6679058 Msa0585620:three_prime_UTR 35.0%
! TGACTTAGGTTTCTCCTTTT+GGG + chr4_2:6679040-6679059 Msa0585620:three_prime_UTR 35.0%
! GGAATGTCTGATTTAGGATT+AGG + chr4_2:6679162-6679181 Msa0585620:intron 35.0%
CATAGCGAGACATGATTAAA+CGG - chr4_2:6679221-6679240 None:intergenic 35.0%
! AATTTTGCTTGCTCCAAAAG+TGG - chr4_2:6679400-6679419 None:intergenic 35.0%
TCCTAACCTCTTTGTTCATT+GGG + chr4_2:6679514-6679533 Msa0585620:intron 35.0%
!! TTTGGGTTTTATGGAAAGTG+AGG + chr4_2:6679606-6679625 Msa0585620:intron 35.0%
!! TTTATGATTGGTGTTGGGAT+TGG + chr4_2:6679742-6679761 Msa0585620:intron 35.0%
AATTATGCCTTGGGAGATAA+GGG + chr4_2:6679772-6679791 Msa0585620:intron 35.0%
!! ACAACTTCTGTTTCTGTGTT+AGG + chr4_2:6679898-6679917 Msa0585620:intron 35.0%
AAATTGTACTTCCTCTTGCT+TGG + chr4_2:6679938-6679957 Msa0585620:intron 35.0%
!!! TTTTGGTTTGCTGTGATGTT+TGG + chr4_2:6680022-6680041 Msa0585620:intron 35.0%
!!! CACTGTAGTTTTTTAGTGGA+GGG + chr4_2:6680058-6680077 Msa0585620:intron 35.0%
!!! TAGTTTTTTGGTGTTGTGAC+TGG + chr4_2:6680194-6680213 Msa0585620:intron 35.0%
!!! AGTTTTTTGGTGTTGTGACT+GGG + chr4_2:6680195-6680214 Msa0585620:intron 35.0%
! TTTGGCTAAAAGTGAGTTGA+AGG - chr4_2:6680490-6680509 None:intergenic 35.0%
GAAAAGACTTAGTCATGAGT+TGG + chr4_2:6680710-6680729 Msa0585620:intron 35.0%
TCTCTTACGTCAAATGTAGA+TGG + chr4_2:6680911-6680930 Msa0585620:intron 35.0%
ATGCACAAGATGAAACATGT+GGG + chr4_2:6680959-6680978 Msa0585620:three_prime_UTR 35.0%
ATGAAACATGTGGGATTTGT+AGG + chr4_2:6680968-6680987 Msa0585620:three_prime_UTR 35.0%
!!! TTTTTGAGTTCTCTACATGC+AGG + chr4_2:6681357-6681376 Msa0585620:intron 35.0%
! TTTTCAGAAGAGCCATAAGA+TGG + chr4_2:6681575-6681594 Msa0585620:intron 35.0%
AGAAACAAAGACAGACATCA+CGG - chr4_2:6681657-6681676 None:intergenic 35.0%
! TGATGTCTGTCTTTGTTTCT+CGG + chr4_2:6681657-6681676 Msa0585620:intron 35.0%
! GCATAACTTGTCTTTCTCTA+CGG + chr4_2:6681699-6681718 Msa0585620:intron 35.0%
! TTTTCCTACTACTTGCAGTT+TGG + chr4_2:6681805-6681824 Msa0585620:intron 35.0%
TTTCCTACTACTTGCAGTTT+GGG + chr4_2:6681806-6681825 Msa0585620:intron 35.0%
! TTTAAAGGTTGAGAGCACAT+CGG + chr4_2:6681927-6681946 Msa0585620:three_prime_UTR 35.0%
! CAATATCCTTTTTGTTGGCA+TGG + chr4_2:6682090-6682109 Msa0585620:three_prime_UTR 35.0%
TTCAATCCATGCCAACAAAA+AGG - chr4_2:6682099-6682118 None:intergenic 35.0%
CTTTCCACTATAGTAATGCT+TGG + chr4_2:6682227-6682246 Msa0585620:three_prime_UTR 35.0%
CTATGAAAGTGAGTTCTCAT+TGG - chr4_2:6682274-6682293 None:intergenic 35.0%
TCATGTATGTTCTTAGTGGA+TGG + chr4_2:6682366-6682385 Msa0585620:three_prime_UTR 35.0%
! TATGTTCTTAGTGGATGGAA+GGG + chr4_2:6682371-6682390 Msa0585620:three_prime_UTR 35.0%
ATGTAATGCTCCCTTGTAAA+AGG - chr4_2:6682427-6682446 None:intergenic 35.0%
AGCATTACATACCTTTCACA+AGG + chr4_2:6682437-6682456 Msa0585620:three_prime_UTR 35.0%
GCATTACATACCTTTCACAA+GGG + chr4_2:6682438-6682457 Msa0585620:three_prime_UTR 35.0%
ACAAGGGAGTTGAACTTAAA+GGG + chr4_2:6682454-6682473 Msa0585620:three_prime_UTR 35.0%
TGGTTCCAAATTCACATCAG+TGG + chr4_2:6677753-6677772 Msa0585620:five_prime_UTR 40.0%
GGTTCCAAATTCACATCAGT+GGG + chr4_2:6677754-6677773 Msa0585620:five_prime_UTR 40.0%
GTTCCAAATTCACATCAGTG+GGG + chr4_2:6677755-6677774 Msa0585620:five_prime_UTR 40.0%
!! GATACTACTGAGGGGTATTA+TGG - chr4_2:6677817-6677836 None:intergenic 40.0%
TGAAGAACCAATGCAGAAGA+TGG - chr4_2:6678010-6678029 None:intergenic 40.0%
TTTCCATCTGTTGTTAAGCC+CGG + chr4_2:6678170-6678189 Msa0585620:intron 40.0%
GTAGTGTAGAAGCTCTTTCA+TGG + chr4_2:6678508-6678527 Msa0585620:intron 40.0%
TGTTTGCCACAAATCCAGTA+AGG + chr4_2:6678626-6678645 Msa0585620:intron 40.0%
AAATGAACCTCGTCCTTCAA+AGG + chr4_2:6678727-6678746 Msa0585620:five_prime_UTR 40.0%
! CTATTAACCTTTGAAGGACG+AGG - chr4_2:6678737-6678756 None:intergenic 40.0%
GAGCCAGACAAAAAAGTTTG+GGG - chr4_2:6678792-6678811 None:intergenic 40.0%
GGAGCCAGACAAAAAAGTTT+GGG - chr4_2:6678793-6678812 None:intergenic 40.0%
ATCTCTGTGATGTGAATCAG+TGG - chr4_2:6678817-6678836 None:intergenic 40.0%
AGATCAGCAGATATCCCAAA+AGG - chr4_2:6679057-6679076 None:intergenic 40.0%
GAAATCAAGTGGGAAGGAAT+TGG + chr4_2:6679304-6679323 Msa0585620:intron 40.0%
TGGAACTGGAGAACAAACAT+GGG + chr4_2:6679327-6679346 Msa0585620:intron 40.0%
TGTGGACAAAATTGATGTGG+TGG + chr4_2:6679465-6679484 Msa0585620:intron 40.0%
CAATGAACAAAGAGGTTAGG+AGG - chr4_2:6679515-6679534 None:intergenic 40.0%
CTCCTAACCTCTTTGTTCAT+TGG + chr4_2:6679513-6679532 Msa0585620:intron 40.0%
TCCCAATGAACAAAGAGGTT+AGG - chr4_2:6679518-6679537 None:intergenic 40.0%
AACACTCCCAATGAACAAAG+AGG - chr4_2:6679523-6679542 None:intergenic 40.0%
! TCTTTGTTCATTGGGAGTGT+TGG + chr4_2:6679522-6679541 Msa0585620:intron 40.0%
!! CTTTGTTCATTGGGAGTGTT+GGG + chr4_2:6679523-6679542 Msa0585620:intron 40.0%
!! TTTGTTCATTGGGAGTGTTG+GGG + chr4_2:6679524-6679543 Msa0585620:intron 40.0%
TGAGGTAGATGAAATTGTGG+AGG + chr4_2:6679658-6679677 Msa0585620:intron 40.0%
TGAAATTGTGGAGGAGATCA+AGG + chr4_2:6679667-6679686 Msa0585620:intron 40.0%
ATCTCCCAAGGCATAATTGA+GGG - chr4_2:6679770-6679789 None:intergenic 40.0%
TATCTCCCAAGGCATAATTG+AGG - chr4_2:6679771-6679790 None:intergenic 40.0%
CAATTATGCCTTGGGAGATA+AGG + chr4_2:6679771-6679790 Msa0585620:intron 40.0%
AAACAGAGCTGCTAAAACAG+CGG - chr4_2:6679809-6679828 None:intergenic 40.0%
!!! GCTGTTGGTGTGTTTTTTGA+AGG + chr4_2:6679874-6679893 Msa0585620:intron 40.0%
GTTTCTGTGTTAGGAACAGA+TGG + chr4_2:6679907-6679926 Msa0585620:intron 40.0%
!! CTTCCTCTTGCTTGGTTTTT+AGG + chr4_2:6679946-6679965 Msa0585620:intron 40.0%
!! TGGTTTTTAGGCTCTTTTGC+TGG + chr4_2:6679958-6679977 Msa0585620:intron 40.0%
!! GGTTTTTAGGCTCTTTTGCT+GGG + chr4_2:6679959-6679978 Msa0585620:intron 40.0%
!!! GTGCCACTGTAGTTTTTTAG+TGG + chr4_2:6680054-6680073 Msa0585620:intron 40.0%
CCTCCACTAAAAAACTACAG+TGG - chr4_2:6680060-6680079 None:intergenic 40.0%
!!! CCACTGTAGTTTTTTAGTGG+AGG + chr4_2:6680057-6680076 Msa0585620:intron 40.0%
GACTGTTAGCACGTATAGTT+CGG + chr4_2:6680130-6680149 Msa0585620:intron 40.0%
! TACTTGATTGCGAGGTTTTG+TGG + chr4_2:6680159-6680178 Msa0585620:intron 40.0%
!! ACTTGATTGCGAGGTTTTGT+GGG + chr4_2:6680160-6680179 Msa0585620:intron 40.0%
GTTGTATGGCTAGTGTGAAT+AGG + chr4_2:6680578-6680597 Msa0585620:intron 40.0%
TGATCTACTCTTCTTACACG+AGG - chr4_2:6680637-6680656 None:intergenic 40.0%
AAGAGTAGATCAAATGGCTC+AGG + chr4_2:6680645-6680664 Msa0585620:intron 40.0%
TGGCTCAGGTTAAAAAGTAG+AGG + chr4_2:6680659-6680678 Msa0585620:intron 40.0%
! GTCATGAGTTGGATCCAATA+TGG + chr4_2:6680721-6680740 Msa0585620:intron 40.0%
GATGCACAAGATGAAACATG+TGG + chr4_2:6680958-6680977 Msa0585620:three_prime_UTR 40.0%
AACATGTGGGATTTGTAGGA+TGG + chr4_2:6680972-6680991 Msa0585620:three_prime_UTR 40.0%
ATTTGTAGGATGGCCTTTGA+TGG + chr4_2:6680982-6681001 Msa0585620:three_prime_UTR 40.0%
ATCAGGACAACATCCATCAA+AGG - chr4_2:6680998-6681017 None:intergenic 40.0%
TGTCCTGATTGTAAACTTCC+CGG + chr4_2:6681009-6681028 Msa0585620:three_prime_UTR 40.0%
ATTAGCAGTAGCTTACTGAG+CGG - chr4_2:6681045-6681064 None:intergenic 40.0%
GCTACTGCTAATGTTGTCTT+TGG + chr4_2:6681053-6681072 Msa0585620:intron 40.0%
TTTCGGAATGTAGATAGGTC+TGG + chr4_2:6681409-6681428 Msa0585620:intron 40.0%
TGTATTGTTACTGGCATGCA+AGG + chr4_2:6681491-6681510 Msa0585620:intron 40.0%
TTCCTACTACTTGCAGTTTG+GGG + chr4_2:6681807-6681826 Msa0585620:intron 40.0%
CTTTAAATTGCCATTCCCGA+CGG - chr4_2:6681914-6681933 None:intergenic 40.0%
GAACAGTTGACAGCTCTTAT+AGG + chr4_2:6682204-6682223 Msa0585620:three_prime_UTR 40.0%
! GTATGTTCTTAGTGGATGGA+AGG + chr4_2:6682370-6682389 Msa0585620:three_prime_UTR 40.0%
AAGTTCAACTCCCTTGTGAA+AGG - chr4_2:6682451-6682470 None:intergenic 40.0%
CACAAGGGAGTTGAACTTAA+AGG + chr4_2:6682453-6682472 Msa0585620:three_prime_UTR 40.0%
GATGAAAGAGAAAGGGGAAG+AGG - chr4_2:6677864-6677883 None:intergenic 45.0%
AGAACCAATGCAGAAGATGG+AGG - chr4_2:6678007-6678026 None:intergenic 45.0%
TTCCATCTGTTGTTAAGCCC+GGG + chr4_2:6678171-6678190 Msa0585620:intron 45.0%
TGGAAACAAGACAAACCCAC+CGG - chr4_2:6678210-6678229 None:intergenic 45.0%
ACGTCACACTACTGAACCAA+AGG - chr4_2:6678345-6678364 None:intergenic 45.0%
GTTAAGAATGAAGAGGGTCC+AGG + chr4_2:6678428-6678447 Msa0585620:intron 45.0%
CCAGACAAAAAAGTTTGGGG+TGG - chr4_2:6678789-6678808 None:intergenic 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG + chr4_2:6678786-6678805 Msa0585620:CDS 45.0%
CGGAGCCAGACAAAAAAGTT+TGG - chr4_2:6678794-6678813 None:intergenic 45.0%
TCTGTGATGTGAATCAGTGG+CGG - chr4_2:6678814-6678833 None:intergenic 45.0%
ATCAAGTGGGAAGGAATTGG+TGG + chr4_2:6679307-6679326 Msa0585620:intron 45.0%
GTGGAACTGGAGAACAAACA+TGG + chr4_2:6679326-6679345 Msa0585620:intron 45.0%
! CTCTTGTGATTTGGCGTGTT+CGG + chr4_2:6679442-6679461 Msa0585620:intron 45.0%
CGGTGTGGACAAAATTGATG+TGG + chr4_2:6679462-6679481 Msa0585620:intron 45.0%
GACAAAATTGATGTGGTGGC+TGG + chr4_2:6679469-6679488 Msa0585620:intron 45.0%
TGAACAAAGAGGTTAGGAGG+AGG - chr4_2:6679512-6679531 None:intergenic 45.0%
TGGAACCCTCAATTATGCCT+TGG + chr4_2:6679762-6679781 Msa0585620:intron 45.0%
GGAACCCTCAATTATGCCTT+GGG + chr4_2:6679763-6679782 Msa0585620:intron 45.0%
GAGCCTAAAAACCAAGCAAG+AGG - chr4_2:6679952-6679971 None:intergenic 45.0%
!! TGGTTTGCTGTGATGTTTGG+AGG + chr4_2:6680025-6680044 Msa0585620:intron 45.0%
TTTGTTCTGCTGTCATGCAC+AGG + chr4_2:6680084-6680103 Msa0585620:intron 45.0%
TTGTTCTGCTGTCATGCACA+GGG + chr4_2:6680085-6680104 Msa0585620:intron 45.0%
AACCTCGCAATCAAGTAACG+AGG - chr4_2:6680156-6680175 None:intergenic 45.0%
AAAATGGCGCCGCATATAGA+CGG - chr4_2:6680225-6680244 None:intergenic 45.0%
GCAAGATGCAAAAACACTCG+CGG - chr4_2:6680263-6680282 None:intergenic 45.0%
! ATGCTGTTGCTTCATGGACT+TGG + chr4_2:6680935-6680954 Msa0585620:three_prime_UTR 45.0%
! TGCTGTTGCTTCATGGACTT+GGG + chr4_2:6680936-6680955 Msa0585620:three_prime_UTR 45.0%
GTCCTGATTGTAAACTTCCC+GGG + chr4_2:6681010-6681029 Msa0585620:three_prime_UTR 45.0%
TCCTGATTGTAAACTTCCCG+GGG + chr4_2:6681011-6681030 Msa0585620:three_prime_UTR 45.0%
TTAGCAGTAGCTTACTGAGC+GGG - chr4_2:6681044-6681063 None:intergenic 45.0%
AACAAAGACAGACATCACGG+CGG - chr4_2:6681654-6681673 None:intergenic 45.0%
CGTCGGGAATGGCAATTTAA+AGG + chr4_2:6681912-6681931 Msa0585620:three_prime_UTR 45.0%
CCTCCCAAGCATTACTATAG+TGG - chr4_2:6682234-6682253 None:intergenic 45.0%
CCACTATAGTAATGCTTGGG+AGG + chr4_2:6682231-6682250 Msa0585620:three_prime_UTR 45.0%
AGTAATGCTTGGGAGGATCA+TGG + chr4_2:6682238-6682257 Msa0585620:three_prime_UTR 45.0%
TTGGGAGGATCATGGTAACA+AGG + chr4_2:6682246-6682265 Msa0585620:three_prime_UTR 45.0%
!!! ATTTTTTTTTTTTTTTGAAA+TGG - chr4_2:6680311-6680330 None:intergenic 5.0%
CCACCCCACTGATGTGAATT+TGG - chr4_2:6677761-6677780 None:intergenic 50.0%
CCAAATTCACATCAGTGGGG+TGG + chr4_2:6677758-6677777 Msa0585620:five_prime_UTR 50.0%
TCCTCCTCCATCTTCTGCAT+TGG + chr4_2:6678000-6678019 Msa0585620:five_prime_UTR 50.0%
ACCAATGCAGAAGATGGAGG+AGG - chr4_2:6678004-6678023 None:intergenic 50.0%
TGGGAAGGAATTGGTGGAAC+TGG + chr4_2:6679313-6679332 Msa0585620:intron 50.0%
!! TTCATTGGGAGTGTTGGGGT+GGG + chr4_2:6679528-6679547 Msa0585620:intron 50.0%
!! AGGAGATCAAGGTGTTGTCG+TGG + chr4_2:6679678-6679697 Msa0585620:intron 50.0%
TATGCCTTGGGAGATAAGGG+AGG + chr4_2:6679775-6679794 Msa0585620:intron 50.0%
!! CTGGGTTGATGTTCAGCTGT+TGG + chr4_2:6679859-6679878 Msa0585620:intron 50.0%
TGTTCTGCTGTCATGCACAG+GGG + chr4_2:6680086-6680105 Msa0585620:intron 50.0%
CTGGGTGTTCCGTCTATATG+CGG + chr4_2:6680213-6680232 Msa0585620:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr4_2:6680782-6680801 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG - chr4_2:6680786-6680805 None:intergenic 50.0%
CACGCCTTATCCCACTAAGT+GGG - chr4_2:6680787-6680806 None:intergenic 50.0%
! GATGGCATGCTGTTGCTTCA+TGG + chr4_2:6680929-6680948 Msa0585620:intron 50.0%
TCCCCGGGAAGTTTACAATC+AGG - chr4_2:6681015-6681034 None:intergenic 50.0%
CACCCCAAACTGCAAGTAGT+AGG - chr4_2:6681812-6681831 None:intergenic 50.0%
CATTGGGCAATGTGCTTGTG+AGG - chr4_2:6681889-6681908 None:intergenic 50.0%
TTCACATCAGTGGGGTGGCA+AGG + chr4_2:6677763-6677782 Msa0585620:five_prime_UTR 55.0%
TCACATCAGTGGGGTGGCAA+GGG + chr4_2:6677764-6677783 Msa0585620:five_prime_UTR 55.0%
GAGAAGGAGGAGAGTGATCG+CGG - chr4_2:6677963-6677982 None:intergenic 55.0%
GCAGAAGATGGAGGAGGATG+CGG - chr4_2:6677998-6678017 None:intergenic 55.0%
CACCCGGGCTTAACAACAGA+TGG - chr4_2:6678176-6678195 None:intergenic 55.0%
TCTGTTGTTAAGCCCGGGTG+AGG + chr4_2:6678176-6678195 Msa0585620:intron 55.0%
CTGTTGTTAAGCCCGGGTGA+GGG + chr4_2:6678177-6678196 Msa0585620:intron 55.0%
TGTTGTTAAGCCCGGGTGAG+GGG + chr4_2:6678178-6678197 Msa0585620:intron 55.0%
! GTGATTTGGCGTGTTCGGTG+TGG + chr4_2:6679447-6679466 Msa0585620:intron 55.0%
!! GTTCATTGGGAGTGTTGGGG+TGG + chr4_2:6679527-6679546 Msa0585620:intron 55.0%
!! TCAAGGTGTTGTCGTGGCAG+TGG + chr4_2:6679684-6679703 Msa0585620:intron 55.0%
CACACCTCCCTTATCTCCCA+AGG - chr4_2:6679782-6679801 None:intergenic 55.0%
!! CTGCTGTTTCGCAGCTCTGT+TGG + chr4_2:6679829-6679848 Msa0585620:intron 55.0%
TGTTTCGCAGCTCTGTTGGC+TGG + chr4_2:6679833-6679852 Msa0585620:intron 55.0%
! CAGCTGCTGAGTTGCTGTTG+CGG + chr4_2:6679985-6680004 Msa0585620:intron 55.0%
! TGCTGAGTTGCTGTTGCGGT+TGG + chr4_2:6679989-6680008 Msa0585620:intron 55.0%
! TGAGTTGCTGTTGCGGTTGG+TGG + chr4_2:6679992-6680011 Msa0585620:intron 55.0%
! GAGTTGCTGTTGCGGTTGGT+GGG + chr4_2:6679993-6680012 Msa0585620:intron 55.0%
! AGTTGCTGTTGCGGTTGGTG+GGG + chr4_2:6679994-6680013 Msa0585620:intron 55.0%
!!! CGGTTGGTGGGGTTGTGTTT+TGG + chr4_2:6680005-6680024 Msa0585620:intron 55.0%
TGTCATGCACAGGGGTAGTG+AGG + chr4_2:6680094-6680113 Msa0585620:intron 55.0%
GGCCTCGTTACTTGATTGCG+AGG + chr4_2:6680151-6680170 Msa0585620:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr4_2:6680774-6680793 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr4_2:6680773-6680792 Msa0585620:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr4_2:6680774-6680793 Msa0585620:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr4_2:6680780-6680799 Msa0585620:intron 55.0%
CCACGCCTTATCCCACTAAG+TGG - chr4_2:6680788-6680807 None:intergenic 55.0%
CCACTTAGTGGGATAAGGCG+TGG + chr4_2:6680785-6680804 Msa0585620:intron 55.0%
CACATTGCCCAATGTGCCGT+CGG + chr4_2:6681895-6681914 Msa0585620:three_prime_UTR 55.0%
ACATTGCCCAATGTGCCGTC+GGG + chr4_2:6681896-6681915 Msa0585620:three_prime_UTR 55.0%
CACATCAGTGGGGTGGCAAG+GGG + chr4_2:6677765-6677784 Msa0585620:five_prime_UTR 60.0%
ACATCAGTGGGGTGGCAAGG+GGG + chr4_2:6677766-6677785 Msa0585620:five_prime_UTR 60.0%
GTGGTCGCGTTGCTTGGTCT+TGG - chr4_2:6677912-6677931 None:intergenic 60.0%
TGGAGAGTGGTCGCGTTGCT+TGG - chr4_2:6677918-6677937 None:intergenic 60.0%
!! GGTGGTGGATGGATGGAGAG+TGG - chr4_2:6677931-6677950 None:intergenic 60.0%
!! GTCGTGTGGTGGTGGATGGA+TGG - chr4_2:6677938-6677957 None:intergenic 60.0%
AAGGAGGAGAGTGATCGCGG+CGG - chr4_2:6677960-6677979 None:intergenic 60.0%
!! GCGGTGATGGATGGAGAAGG+AGG - chr4_2:6677976-6677995 None:intergenic 60.0%
GAAGATGGAGGAGGATGCGG+CGG - chr4_2:6677995-6678014 None:intergenic 60.0%
GTTGTTAAGCCCGGGTGAGG+GGG + chr4_2:6678179-6678198 Msa0585620:intron 60.0%
!! ATTGGGAGTGTTGGGGTGGG+AGG + chr4_2:6679531-6679550 Msa0585620:intron 60.0%
!! TTGGGAGTGTTGGGGTGGGA+GGG + chr4_2:6679532-6679551 Msa0585620:intron 60.0%
! TTCGCAGCTCTGTTGGCTGG+TGG + chr4_2:6679836-6679855 Msa0585620:intron 60.0%
! AGCTCTGTTGGCTGGTGGCT+GGG + chr4_2:6679841-6679860 Msa0585620:intron 60.0%
ATGCACAGGGGTAGTGAGGC+AGG + chr4_2:6680098-6680117 Msa0585620:intron 60.0%
TGCACAGGGGTAGTGAGGCA+GGG + chr4_2:6680099-6680118 Msa0585620:intron 60.0%
GCCATTCCCGACGGCACATT+GGG - chr4_2:6681905-6681924 None:intergenic 60.0%
TGCCATTCCCGACGGCACAT+TGG - chr4_2:6681906-6681925 None:intergenic 60.0%
!! GCGGCGGTGATGGATGGAGA+AGG - chr4_2:6677979-6677998 None:intergenic 65.0%
!! GAGGATGCGGCGGTGATGGA+TGG - chr4_2:6677985-6678004 None:intergenic 65.0%
! CAGCTCTGTTGGCTGGTGGC+TGG + chr4_2:6679840-6679859 Msa0585620:intron 65.0%
GCACAGGGGTAGTGAGGCAG+GGG + chr4_2:6680100-6680119 Msa0585620:intron 65.0%
ACTGAGCGGGCAGTCATCCC+CGG - chr4_2:6681031-6681050 None:intergenic 65.0%
GCCCAATGTGCCGTCGGGAA+TGG + chr4_2:6681901-6681920 Msa0585620:three_prime_UTR 65.0%
!! GGCGGTCGTGTGGTGGTGGA+TGG - chr4_2:6677942-6677961 None:intergenic 70.0%
TGATCGCGGCGGTCGTGTGG+TGG - chr4_2:6677949-6677968 None:intergenic 70.0%
GAGTGATCGCGGCGGTCGTG+TGG - chr4_2:6677952-6677971 None:intergenic 70.0%
GGAGGAGGATGCGGCGGTGA+TGG - chr4_2:6677989-6678008 None:intergenic 70.0%
ACCGGCAACTCCCCCTCACC+CGG - chr4_2:6678192-6678211 None:intergenic 70.0%
GGTGAGGGGGAGTTGCCGGT+GGG + chr4_2:6678192-6678211 Msa0585620:intron 70.0%
CTGAGCGGGCAGTCATCCCC+GGG - chr4_2:6681030-6681049 None:intergenic 70.0%
TCGCGGCGGTCGTGTGGTGG+TGG - chr4_2:6677946-6677965 None:intergenic 75.0%
CCGGCAACTCCCCCTCACCC+GGG - chr4_2:6678191-6678210 None:intergenic 75.0%
CCCGGGTGAGGGGGAGTTGC+CGG + chr4_2:6678188-6678207 Msa0585620:intron 75.0%
GGGTGAGGGGGAGTTGCCGG+TGG + chr4_2:6678191-6678210 Msa0585620:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 6677716 6682503 6677716 ID=Msa0585620;Name=Msa0585620
chr4_2 mRNA 6677716 6682503 6677716 ID=Msa0585620-mRNA-1;Parent=Msa0585620;Name=Msa0585620-mRNA-1;_AED=0.04;_eAED=0.04;_QI=404|1|1|1|0|0.25|4|888|80
chr4_2 exon 6677716 6678085 6677716 ID=Msa0585620-mRNA-1:exon:1613;Parent=Msa0585620-mRNA-1
chr4_2 exon 6678726 6679090 6678726 ID=Msa0585620-mRNA-1:exon:1614;Parent=Msa0585620-mRNA-1
chr4_2 exon 6680930 6681048 6680930 ID=Msa0585620-mRNA-1:exon:1615;Parent=Msa0585620-mRNA-1
chr4_2 exon 6681823 6682503 6681823 ID=Msa0585620-mRNA-1:exon:1616;Parent=Msa0585620-mRNA-1
chr4_2 five_prime_UTR 6677716 6678085 6677716 ID=Msa0585620-mRNA-1:five_prime_utr;Parent=Msa0585620-mRNA-1
chr4_2 five_prime_UTR 6678726 6678759 6678726 ID=Msa0585620-mRNA-1:five_prime_utr;Parent=Msa0585620-mRNA-1
chr4_2 CDS 6678760 6679002 6678760 ID=Msa0585620-mRNA-1:cds;Parent=Msa0585620-mRNA-1
chr4_2 three_prime_UTR 6679003 6679090 6679003 ID=Msa0585620-mRNA-1:three_prime_utr;Parent=Msa0585620-mRNA-1
chr4_2 three_prime_UTR 6680930 6681048 6680930 ID=Msa0585620-mRNA-1:three_prime_utr;Parent=Msa0585620-mRNA-1
chr4_2 three_prime_UTR 6681823 6682503 6681823 ID=Msa0585620-mRNA-1:three_prime_utr;Parent=Msa0585620-mRNA-1
Gene Sequence

>Msa0585620

ATGAACTTGAACAATTTTGATGGCGGCCACCCCAAACTTTTTTGTCTGGCTCCGCCACTGATTCACATCACAGAGATGAAAGTGAAAATCTTGCGTATCCTTCTCAATATTTCAATTCCCTTTCATTATTCTTCAATTCCTCTTTCAATTTTGCATATTACCTGTTTGTTCTTTTGCTTCACAGTGTTTTTGTTTTCAAATTTTTATGCATTTACTCTTTCTTTGTTTCAATTTTTTTTATGA
Protein sequence

>Msa0585620

MNLNNFDGGHPKLFCLAPPLIHITEMKVKILRILLNISIPFHYSSIPLSILHITCLFFCFTVFLFSNFYAFTLSLFQFFL*