Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120970 | XP_003594552.1 | 90.909 | 121 | 11 | 0 | 45 | 165 | 72 | 192 | 2.36e-70 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120970 | sp|Q9SUC3|MS5_ARATH | 60.331 | 121 | 48 | 0 | 45 | 165 | 72 | 192 | 3.84e-46 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120970 | G7IKX2 | 90.909 | 121 | 11 | 0 | 45 | 165 | 72 | 192 | 1.13e-70 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0668260 | Msa1120970 | 0.818280 | 2.128304e-52 | -8.615850e-47 |
| Msa0589780 | Msa1120970 | 0.822273 | 2.587047e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120970 | MtrunA17_Chr2g0292681 | 90.909 | 121 | 11 | 0 | 45 | 165 | 72 | 192 | 2.17e-74 | 234 |
| Msa1120970 | MtrunA17_Chr8g0371521 | 61.983 | 121 | 46 | 0 | 45 | 165 | 57 | 177 | 3.60e-46 | 157 |
| Msa1120970 | MtrunA17_Chr7g0237581 | 60.331 | 121 | 48 | 0 | 45 | 165 | 45 | 165 | 1.89e-45 | 151 |
| Msa1120970 | MtrunA17_Chr7g0237621 | 60.331 | 121 | 48 | 0 | 45 | 165 | 57 | 177 | 9.12e-45 | 150 |
| Msa1120970 | MtrunA17_Chr2g0292671 | 84.932 | 73 | 11 | 0 | 93 | 165 | 2 | 74 | 6.22e-39 | 131 |
| Msa1120970 | MtrunA17_Chr3g0077351 | 95.000 | 40 | 2 | 0 | 1 | 40 | 46 | 85 | 7.05e-18 | 79.7 |
| Msa1120970 | MtrunA17_Chr2g0292661 | 85.714 | 35 | 5 | 0 | 45 | 79 | 69 | 103 | 3.49e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120970 | AT4G20900.2 | 60.331 | 121 | 48 | 0 | 45 | 165 | 72 | 192 | 3.90e-47 | 159 |
| Msa1120970 | AT4G20900.1 | 60.331 | 121 | 48 | 0 | 45 | 165 | 72 | 192 | 5.68e-47 | 159 |
| Msa1120970 | AT3G51280.1 | 61.157 | 121 | 47 | 0 | 45 | 165 | 51 | 171 | 9.73e-45 | 153 |
| Msa1120970 | AT5G48850.1 | 54.545 | 121 | 55 | 0 | 45 | 165 | 48 | 168 | 1.44e-41 | 142 |
| Msa1120970 | AT1G04770.1 | 55.372 | 121 | 54 | 0 | 45 | 165 | 41 | 161 | 1.80e-40 | 139 |
| Msa1120970 | AT5G44330.1 | 56.198 | 121 | 53 | 0 | 45 | 165 | 65 | 185 | 2.00e-40 | 142 |
Find 43 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGGATGCAGGGAGGAAG+AGG | 0.336594 | 7_3:+70865058 | Msa1120970:CDS |
| TTGTTGACTGGAACAGAATC+AGG | 0.358714 | 7_3:-70861459 | None:intergenic |
| CATCTTGGTTGAACTCTATA+CGG | 0.371370 | 7_3:+70862171 | Msa1120970:CDS |
| CGAGAGTGCCTTGAAGGATA+TGG | 0.374146 | 7_3:+70862048 | Msa1120970:CDS |
| GATGCGATCACCAGCATTGA+TGG | 0.380184 | 7_3:-70862026 | None:intergenic |
| TTCTGGGCTGCCATCAATGC+TGG | 0.391601 | 7_3:+70862016 | Msa1120970:CDS |
| GGTTCTATGTCTAGAAGAAT+TGG | 0.399284 | 7_3:+70861408 | Msa1120970:CDS |
| CATTGATGGCAGCCCAGAAA+AGG | 0.416287 | 7_3:-70862012 | None:intergenic |
| AACTAAAGCCATATCCTTCA+AGG | 0.422487 | 7_3:-70862056 | None:intergenic |
| CAGTTAGTGGATAAAGATCC+AGG | 0.435700 | 7_3:+70861977 | Msa1120970:intron |
| AGAGATTCTTGAGAATCAAA+AGG | 0.444700 | 7_3:-70862142 | None:intergenic |
| AGAATCTCTTGACAACATCT+TGG | 0.450411 | 7_3:+70862156 | Msa1120970:CDS |
| TTTGATAAGTTTCAGAAAGT+GGG | 0.454748 | 7_3:+70861798 | Msa1120970:intron |
| TTCTGTTCCAGTCAACAAAC+AGG | 0.461427 | 7_3:+70861464 | Msa1120970:CDS |
| TCGCATCGAGAGTGCCTTGA+AGG | 0.466087 | 7_3:+70862042 | Msa1120970:CDS |
| TAGTTATGAAGCAACTGAAC+CGG | 0.474084 | 7_3:+70862074 | Msa1120970:CDS |
| AAAAGGGAAATTGCTTTACC+TGG | 0.474611 | 7_3:-70861995 | None:intergenic |
| AGGAAGCATAAACGGTTTCA+AGG | 0.475138 | 7_3:+70865078 | Msa1120970:CDS |
| GGAGGAAGAGGAAGCATAAA+CGG | 0.492560 | 7_3:+70865070 | Msa1120970:CDS |
| CCAGTGAGGGAAAAGGATGC+AGG | 0.495141 | 7_3:+70865048 | Msa1120970:intron |
| AGCAGAACCTGTTTGTTGAC+TGG | 0.503298 | 7_3:-70861471 | None:intergenic |
| GGAAGGGTTGATGAAGAGAT+TGG | 0.505590 | 7_3:+70862627 | Msa1120970:CDS |
| ATTGATGGCAGCCCAGAAAA+GGG | 0.512233 | 7_3:-70862011 | None:intergenic |
| GAAGATGGTATGACATATGT+TGG | 0.513644 | 7_3:+70862678 | Msa1120970:CDS |
| TTGCTACTATTATAGAGGTC+AGG | 0.517374 | 7_3:+70862606 | Msa1120970:intron |
| TTTGATCAGTTTCAGAAAGT+GGG | 0.521782 | 7_3:+70861648 | Msa1120970:intron |
| TTTGATCAGTTTCAGAAAGT+GGG | 0.521782 | 7_3:+70861723 | Msa1120970:intron |
| GAGATTCTTGAGAATCAAAA+GGG | 0.530937 | 7_3:-70862141 | None:intergenic |
| GAGAATCAAAAGGGCAGAGA+TGG | 0.537665 | 7_3:-70862132 | None:intergenic |
| AGAGAGAGAGATATTACTGA+AGG | 0.543163 | 7_3:+70865103 | Msa1120970:CDS |
| ACAAAACATGCAAGATCTCA+AGG | 0.546544 | 7_3:+70862708 | Msa1120970:CDS |
| ATTCGATTGCTTCATCCGAC+CGG | 0.551071 | 7_3:-70862093 | None:intergenic |
| CAACATTCTCAGAGGTTCGA+AGG | 0.558149 | 7_3:+70861387 | Msa1120970:CDS |
| TACTATTATAGAGGTCAGGA+AGG | 0.567395 | 7_3:+70862610 | Msa1120970:intron |
| AAGTTGAAGCAAATTGAAGA+TGG | 0.583679 | 7_3:+70862663 | Msa1120970:CDS |
| GGAAGCATAAACGGTTTCAA+GGG | 0.585217 | 7_3:+70865079 | Msa1120970:CDS |
| CAGTGAGGGAAAAGGATGCA+GGG | 0.599617 | 7_3:+70865049 | Msa1120970:intron |
| ATGGTATGACATATGTTGGA+AGG | 0.607080 | 7_3:+70862682 | Msa1120970:CDS |
| CAAAACATGCAAGATCTCAA+GGG | 0.648943 | 7_3:+70862709 | Msa1120970:CDS |
| CACTTCAACAACATTCTCAG+AGG | 0.654400 | 7_3:+70861379 | Msa1120970:CDS |
| TATGAAGCAACTGAACCGGT+CGG | 0.679096 | 7_3:+70862078 | Msa1120970:CDS |
| ACTATTATAGAGGTCAGGAA+GGG | 0.680139 | 7_3:+70862611 | Msa1120970:intron |
| TGAGGGAAAAGGATGCAGGG+AGG | 0.732604 | 7_3:+70865052 | Msa1120970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAAAAAAAATATTT+TGG | - | chr7_3:70863490-70863509 | None:intergenic | 0.0% |
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | + | chr7_3:70861500-70861519 | Msa1120970:intron | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | + | chr7_3:70861501-70861520 | Msa1120970:intron | 10.0% |
| !! | AATTATTTAATATATACGAA+TGG | + | chr7_3:70863520-70863539 | Msa1120970:intron | 10.0% |
| !!! | TTAATTAATTATTCCTTTTT+GGG | + | chr7_3:70863719-70863738 | Msa1120970:intron | 10.0% |
| !!! | TTAATTAATTATTCCTTTTT+GGG | + | chr7_3:70863719-70863738 | Msa1120970:intron | 10.0% |
| !!! | TTATGTTTTTATTTTATTAG+GGG | + | chr7_3:70864339-70864358 | Msa1120970:intron | 10.0% |
| !!! | TGCAAAATTTTTTAAAAAAG+AGG | - | chr7_3:70862947-70862966 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAGTTATGTTCA+AGG | - | chr7_3:70863626-70863645 | None:intergenic | 15.0% |
| !!! | CTTAATTAATTATTCCTTTT+TGG | + | chr7_3:70863718-70863737 | Msa1120970:intron | 15.0% |
| !! | TAAAAAAAAAGTTATGTTCA+AGG | - | chr7_3:70863626-70863645 | None:intergenic | 15.0% |
| !!! | CTTAATTAATTATTCCTTTT+TGG | + | chr7_3:70863718-70863737 | Msa1120970:intron | 15.0% |
| !! | ATATATAATCCAATATGTTA+AGG | - | chr7_3:70863976-70863995 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTAATTTGTACAA+AGG | - | chr7_3:70864160-70864179 | None:intergenic | 15.0% |
| !!! | ATATCATTATCAATTTTCTA+GGG | - | chr7_3:70864187-70864206 | None:intergenic | 15.0% |
| !!! | AATATCATTATCAATTTTCT+AGG | - | chr7_3:70864188-70864207 | None:intergenic | 15.0% |
| !!! | TGACTTTTTTTTTATCATTA+CGG | + | chr7_3:70864272-70864291 | Msa1120970:intron | 15.0% |
| !! | TTAATCAATTAAACTAACAA+AGG | - | chr7_3:70864652-70864671 | None:intergenic | 15.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | + | chr7_3:70861903-70861922 | Msa1120970:intron | 20.0% |
| !! | ACATACATACATACATATAT+AGG | + | chr7_3:70863107-70863126 | Msa1120970:intron | 20.0% |
| !! | CATACATACATACATATATA+GGG | + | chr7_3:70863108-70863127 | Msa1120970:intron | 20.0% |
| !! | GGTTAATTAAAGAGTAAAAA+AGG | - | chr7_3:70863666-70863685 | None:intergenic | 20.0% |
| !! | GGTTAATTAAAGAGTAAAAA+AGG | - | chr7_3:70863666-70863685 | None:intergenic | 20.0% |
| !!! | AATTTTATACGATAAGTATG+AGG | - | chr7_3:70864066-70864085 | None:intergenic | 20.0% |
| !! | ACTGATGTAAAAAATGATTA+AGG | - | chr7_3:70864494-70864513 | None:intergenic | 20.0% |
| !! | AAACTGGATTTAGTTATTTA+TGG | + | chr7_3:70864543-70864562 | Msa1120970:intron | 20.0% |
| !! | TTAGTTTAATTGATTAAGCA+AGG | + | chr7_3:70864655-70864674 | Msa1120970:intron | 20.0% |
| !! | TAGTTTAATTGATTAAGCAA+GGG | + | chr7_3:70864656-70864675 | Msa1120970:intron | 20.0% |
| !! | TGATGTATCAAATTCAAATT+AGG | + | chr7_3:70864752-70864771 | Msa1120970:intron | 20.0% |
| !! | GATGTATCAAATTCAAATTA+GGG | + | chr7_3:70864753-70864772 | Msa1120970:intron | 20.0% |
| !! | AACGATAAGAATCAAAAATA+CGG | - | chr7_3:70864921-70864940 | None:intergenic | 20.0% |
| !!! | CATCATTGATTCAATAATAT+CGG | - | chr7_3:70865023-70865042 | None:intergenic | 20.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | + | chr7_3:70861797-70861816 | Msa1120970:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | + | chr7_3:70861798-70861817 | Msa1120970:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | + | chr7_3:70861919-70861938 | Msa1120970:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | - | chr7_3:70862299-70862318 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | + | chr7_3:70862322-70862341 | Msa1120970:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | - | chr7_3:70862369-70862388 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | + | chr7_3:70862367-70862386 | Msa1120970:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | + | chr7_3:70862383-70862402 | Msa1120970:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | + | chr7_3:70862538-70862557 | Msa1120970:intron | 25.0% |
| ! | GTATATTGCTACTATTATAG+AGG | + | chr7_3:70862601-70862620 | Msa1120970:intron | 25.0% |
| ! | ACAATTTGAATTAAGAGAGA+TGG | - | chr7_3:70862901-70862920 | None:intergenic | 25.0% |
| ! | AACCATCAAGATTAATCTAA+GGG | - | chr7_3:70863189-70863208 | None:intergenic | 25.0% |
| ! | ATCACTATTGCAAAATCATT+GGG | - | chr7_3:70863385-70863404 | None:intergenic | 25.0% |
| ! | AATCACTATTGCAAAATCAT+TGG | - | chr7_3:70863386-70863405 | None:intergenic | 25.0% |
| ! | GTAAATCAGTAAAACTGAAA+CGG | + | chr7_3:70863551-70863570 | Msa1120970:intron | 25.0% |
| ! | AATTAAAGAAAAACGGATCT+GGG | - | chr7_3:70863687-70863706 | None:intergenic | 25.0% |
| ! | TAATTAAAGAAAAACGGATC+TGG | - | chr7_3:70863688-70863707 | None:intergenic | 25.0% |
| !!! | ATTAATTATTCCTTTTTGGG+TGG | + | chr7_3:70863722-70863741 | Msa1120970:intron | 25.0% |
| !!! | CATAATTTATTGTCGATTTG+AGG | + | chr7_3:70863746-70863765 | Msa1120970:intron | 25.0% |
| ! | AATTAAAGAAAAACGGATCT+GGG | - | chr7_3:70863687-70863706 | None:intergenic | 25.0% |
| ! | TAATTAAAGAAAAACGGATC+TGG | - | chr7_3:70863688-70863707 | None:intergenic | 25.0% |
| !!! | ATTAATTATTCCTTTTTGGG+TGG | + | chr7_3:70863722-70863741 | Msa1120970:intron | 25.0% |
| !!! | CATAATTTATTGTCGATTTG+AGG | + | chr7_3:70863746-70863765 | Msa1120970:intron | 25.0% |
| ATTTGATCAGTTTCAGAAAG+TGG | + | chr7_3:70861572-70861591 | Msa1120970:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | + | chr7_3:70861573-70861592 | Msa1120970:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | + | chr7_3:70861572-70861591 | Msa1120970:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | + | chr7_3:70861573-70861592 | Msa1120970:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | + | chr7_3:70861572-70861591 | Msa1120970:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | + | chr7_3:70861573-70861592 | Msa1120970:intron | 30.0% | |
| AATTCATGAGATGTAAGAGA+AGG | + | chr7_3:70861860-70861879 | Msa1120970:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | + | chr7_3:70861964-70861983 | Msa1120970:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | + | chr7_3:70862000-70862019 | Msa1120970:CDS | 30.0% |
| GAGATTCTTGAGAATCAAAA+GGG | - | chr7_3:70862144-70862163 | None:intergenic | 30.0% | |
| AGAGATTCTTGAGAATCAAA+AGG | - | chr7_3:70862145-70862164 | None:intergenic | 30.0% | |
| TTGAACTCTATACGGTATAA+GGG | + | chr7_3:70862179-70862198 | Msa1120970:intron | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | - | chr7_3:70862225-70862244 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | + | chr7_3:70862325-70862344 | Msa1120970:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | + | chr7_3:70862326-70862345 | Msa1120970:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | + | chr7_3:70862481-70862500 | Msa1120970:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | + | chr7_3:70862551-70862570 | Msa1120970:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | + | chr7_3:70862663-70862682 | Msa1120970:CDS | 30.0% | |
| AGATAAACTTAGGAGGTAAA+TGG | - | chr7_3:70862853-70862872 | None:intergenic | 30.0% | |
| ! | AGAGGACATTTTATAATGAG+AGG | + | chr7_3:70863144-70863163 | Msa1120970:intron | 30.0% |
| ! | ATTTTATAATGAGAGGTGAG+AGG | + | chr7_3:70863151-70863170 | Msa1120970:intron | 30.0% |
| ! | TTTTATAATGAGAGGTGAGA+GGG | + | chr7_3:70863152-70863171 | Msa1120970:intron | 30.0% |
| CAACCATCAAGATTAATCTA+AGG | - | chr7_3:70863190-70863209 | None:intergenic | 30.0% | |
| TAAATTATGTCCACCCAAAA+AGG | - | chr7_3:70863735-70863754 | None:intergenic | 30.0% | |
| TAAATTATGTCCACCCAAAA+AGG | - | chr7_3:70863735-70863754 | None:intergenic | 30.0% | |
| TAAGGAGAATTTGGTTGAAT+TGG | - | chr7_3:70863958-70863977 | None:intergenic | 30.0% | |
| CCAATATGTTAAGGAGAATT+TGG | - | chr7_3:70863967-70863986 | None:intergenic | 30.0% | |
| CCAAATTCTCCTTAACATAT+TGG | + | chr7_3:70863964-70863983 | Msa1120970:intron | 30.0% | |
| TGATCTATCAAATTCATCAC+CGG | - | chr7_3:70864454-70864473 | None:intergenic | 30.0% | |
| CAATGAACTAATCTTCAAAC+TGG | + | chr7_3:70864527-70864546 | Msa1120970:intron | 30.0% | |
| TATATTTGCATCTGCAAAAC+TGG | + | chr7_3:70864573-70864592 | Msa1120970:intron | 30.0% | |
| ATATTTGCATCTGCAAAACT+GGG | + | chr7_3:70864574-70864593 | Msa1120970:intron | 30.0% | |
| ATCGTTCTTGTATTGAACAT+TGG | + | chr7_3:70864935-70864954 | Msa1120970:intron | 30.0% | |
| !!! | TCTTATTTGGTTTTCACCTT+GGG | - | chr7_3:70864987-70865006 | None:intergenic | 30.0% |
| GGTTCTATGTCTAGAAGAAT+TGG | + | chr7_3:70861408-70861427 | Msa1120970:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | + | chr7_3:70861517-70861536 | Msa1120970:intron | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | - | chr7_3:70861998-70862017 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | + | chr7_3:70861999-70862018 | Msa1120970:CDS | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | - | chr7_3:70862059-70862078 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | + | chr7_3:70862074-70862093 | Msa1120970:CDS | 35.0% | |
| AGAATCTCTTGACAACATCT+TGG | + | chr7_3:70862156-70862175 | Msa1120970:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | + | chr7_3:70862171-70862190 | Msa1120970:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | + | chr7_3:70862178-70862197 | Msa1120970:intron | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | + | chr7_3:70862249-70862268 | Msa1120970:intron | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | + | chr7_3:70862333-70862352 | Msa1120970:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | + | chr7_3:70862498-70862517 | Msa1120970:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | - | chr7_3:70862572-70862591 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | + | chr7_3:70862569-70862588 | Msa1120970:intron | 35.0% |
| TTGCTACTATTATAGAGGTC+AGG | + | chr7_3:70862606-70862625 | Msa1120970:intron | 35.0% | |
| TACTATTATAGAGGTCAGGA+AGG | + | chr7_3:70862610-70862629 | Msa1120970:intron | 35.0% | |
| ACTATTATAGAGGTCAGGAA+GGG | + | chr7_3:70862611-70862630 | Msa1120970:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | + | chr7_3:70862678-70862697 | Msa1120970:CDS | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | + | chr7_3:70862682-70862701 | Msa1120970:CDS | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | + | chr7_3:70862708-70862727 | Msa1120970:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | + | chr7_3:70862709-70862728 | Msa1120970:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | + | chr7_3:70862756-70862775 | Msa1120970:intron | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | + | chr7_3:70862757-70862776 | Msa1120970:intron | 35.0% | |
| !! | GTCTTTCTGAGATTTCTTTG+CGG | - | chr7_3:70862831-70862850 | None:intergenic | 35.0% |
| ATAGCGTGCTAGATAAACTT+AGG | - | chr7_3:70862863-70862882 | None:intergenic | 35.0% | |
| ! | TTTGCATATATTTTTCGCCC+AGG | + | chr7_3:70862961-70862980 | Msa1120970:intron | 35.0% |
| !! | TAGGGAAAGTATCAAATGAG+AGG | + | chr7_3:70863126-70863145 | Msa1120970:intron | 35.0% |
| TAGTCACGTTAGTTACTAGA+GGG | - | chr7_3:70863225-70863244 | None:intergenic | 35.0% | |
| ATAGTCACGTTAGTTACTAG+AGG | - | chr7_3:70863226-70863245 | None:intergenic | 35.0% | |
| !! | ATAGTTAGAAGCGTGTGTTT+TGG | - | chr7_3:70863269-70863288 | None:intergenic | 35.0% |
| !!! | ATATTTTGGCCCCCAAATTT+TGG | - | chr7_3:70863476-70863495 | None:intergenic | 35.0% |
| TTGAATTGGAGAGAAGATTG+AGG | - | chr7_3:70863944-70863963 | None:intergenic | 35.0% | |
| CTCGGCTCTCATATTAAAAT+AGG | - | chr7_3:70864365-70864384 | None:intergenic | 35.0% | |
| ATCTTTACATTCCAACTTCG+AGG | + | chr7_3:70864822-70864841 | Msa1120970:intron | 35.0% | |
| ATACAAAATCCGATTTCCCA+AGG | + | chr7_3:70864968-70864987 | Msa1120970:intron | 35.0% | |
| !!! | CTCTTATTTGGTTTTCACCT+TGG | - | chr7_3:70864988-70865007 | None:intergenic | 35.0% |
| CAAGGTGAAAACCAAATAAG+AGG | + | chr7_3:70864986-70865005 | Msa1120970:intron | 35.0% | |
| GTGAAAACCAAATAAGAGGT+CGG | + | chr7_3:70864990-70865009 | Msa1120970:intron | 35.0% | |
| ! | TCAATGATGTTTTTCCAGTG+AGG | + | chr7_3:70865034-70865053 | Msa1120970:intron | 35.0% |
| ! | CAATGATGTTTTTCCAGTGA+GGG | + | chr7_3:70865035-70865054 | Msa1120970:intron | 35.0% |
| CACTTCAACAACATTCTCAG+AGG | + | chr7_3:70861379-70861398 | Msa1120970:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | - | chr7_3:70861462-70861481 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | + | chr7_3:70861464-70861483 | Msa1120970:CDS | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | + | chr7_3:70861977-70861996 | Msa1120970:intron | 40.0% |
| GTGCTGAACAAGAGATATCA+AGG | + | chr7_3:70862748-70862767 | Msa1120970:intron | 40.0% | |
| TATCTAGCACGCTATTTGAC+AGG | + | chr7_3:70862868-70862887 | Msa1120970:intron | 40.0% | |
| GTATGTGTGTGTGTATACAG+TGG | - | chr7_3:70863009-70863028 | None:intergenic | 40.0% | |
| GGCCCTTAGATTAATCTTGA+TGG | + | chr7_3:70863184-70863203 | Msa1120970:intron | 40.0% | |
| AGATTGCTTCTCTGTTGAAG+AGG | - | chr7_3:70863321-70863340 | None:intergenic | 40.0% | |
| AGCTGATAGCATCAAAGTCT+TGG | + | chr7_3:70863592-70863611 | Msa1120970:intron | 40.0% | |
| GCTGATAGCATCAAAGTCTT+GGG | + | chr7_3:70863593-70863612 | Msa1120970:intron | 40.0% | |
| CAGTGTAGAACAAGAGAGAA+TGG | - | chr7_3:70864421-70864440 | None:intergenic | 40.0% | |
| ATGTTTCTCCACCTGATTCA+TGG | + | chr7_3:70864608-70864627 | Msa1120970:intron | 40.0% | |
| CTTGATACGAACCATGAATC+AGG | - | chr7_3:70864622-70864641 | None:intergenic | 40.0% | |
| CTGATTCATGGTTCGTATCA+AGG | + | chr7_3:70864620-70864639 | Msa1120970:intron | 40.0% | |
| ATTCATGGTTCGTATCAAGG+TGG | + | chr7_3:70864623-70864642 | Msa1120970:intron | 40.0% | |
| AACAAACTTCACCTCGAAGT+TGG | - | chr7_3:70864836-70864855 | None:intergenic | 40.0% | |
| ! | ACTTCGAGGTGAAGTTTGTT+AGG | + | chr7_3:70864836-70864855 | Msa1120970:intron | 40.0% |
| TGGTTGCTCATAGTTTAGCT+AGG | + | chr7_3:70864872-70864891 | Msa1120970:intron | 40.0% | |
| GGTTGCTCATAGTTTAGCTA+GGG | + | chr7_3:70864873-70864892 | Msa1120970:intron | 40.0% | |
| ! | TGGTTTTCACCTTGGGAAAT+CGG | - | chr7_3:70864980-70864999 | None:intergenic | 40.0% |
| ! | TGTTTTTCCAGTGAGGGAAA+AGG | + | chr7_3:70865041-70865060 | Msa1120970:intron | 40.0% |
| ! | AGGAAGCATAAACGGTTTCA+AGG | + | chr7_3:70865078-70865097 | Msa1120970:CDS | 40.0% |
| ! | GGAAGCATAAACGGTTTCAA+GGG | + | chr7_3:70865079-70865098 | Msa1120970:CDS | 40.0% |
| CAACATTCTCAGAGGTTCGA+AGG | + | chr7_3:70861387-70861406 | Msa1120970:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | - | chr7_3:70861474-70861493 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | + | chr7_3:70861581-70861600 | Msa1120970:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | + | chr7_3:70861588-70861607 | Msa1120970:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | + | chr7_3:70861581-70861600 | Msa1120970:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | + | chr7_3:70861588-70861607 | Msa1120970:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | + | chr7_3:70861581-70861600 | Msa1120970:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | + | chr7_3:70861588-70861607 | Msa1120970:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | - | chr7_3:70862014-70862033 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | + | chr7_3:70862078-70862097 | Msa1120970:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | - | chr7_3:70862096-70862115 | None:intergenic | 45.0% | |
| GAGAATCAAAAGGGCAGAGA+TGG | - | chr7_3:70862135-70862154 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | + | chr7_3:70862627-70862646 | Msa1120970:CDS | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | + | chr7_3:70862764-70862783 | Msa1120970:intron | 45.0% | |
| GCGTGCTAGATAAACTTAGG+AGG | - | chr7_3:70862860-70862879 | None:intergenic | 45.0% | |
| CCAGGAATTTCATAGAGCCT+GGG | - | chr7_3:70862981-70863000 | None:intergenic | 45.0% | |
| TGTGTGTGTGTATACAGTGG+CGG | - | chr7_3:70863006-70863025 | None:intergenic | 45.0% | |
| GAGGTGAGAGGGTGAAATAA+TGG | + | chr7_3:70863163-70863182 | Msa1120970:intron | 45.0% | |
| AAGAGGATTTGCGATGAGGA+AGG | - | chr7_3:70863304-70863323 | None:intergenic | 45.0% | |
| GTTGAAGAGGATTTGCGATG+AGG | - | chr7_3:70863308-70863327 | None:intergenic | 45.0% | |
| ! | TTTTGGCCCCCAAATTTTGG+AGG | - | chr7_3:70863473-70863492 | None:intergenic | 45.0% |
| GTAAAACTGAAACGGCCTAG+CGG | + | chr7_3:70863559-70863578 | Msa1120970:intron | 45.0% | |
| ! | TTTGAGGCTCCTCAATCTCT+TGG | + | chr7_3:70863762-70863781 | Msa1120970:intron | 45.0% |
| TTGAGGCTCCTCAATCTCTT+GGG | + | chr7_3:70863763-70863782 | Msa1120970:intron | 45.0% | |
| GTATCGAACCCAAGAGATTG+AGG | - | chr7_3:70863774-70863793 | None:intergenic | 45.0% | |
| AGAGAGAATGGTGACATCCA+GGG | - | chr7_3:70864409-70864428 | None:intergenic | 45.0% | |
| AAGAGAGAATGGTGACATCC+AGG | - | chr7_3:70864410-70864429 | None:intergenic | 45.0% | |
| TCTACACTGAAGAGCGATTC+CGG | + | chr7_3:70864432-70864451 | Msa1120970:intron | 45.0% | |
| GATACGAACCATGAATCAGG+TGG | - | chr7_3:70864619-70864638 | None:intergenic | 45.0% | |
| TGTTAGGAGACAAGCGAACA+TGG | + | chr7_3:70864852-70864871 | Msa1120970:intron | 45.0% | |
| TGCTCATAGTTTAGCTAGGG+CGG | + | chr7_3:70864876-70864895 | Msa1120970:intron | 45.0% | |
| CTGTTCTCCGACCTCTTATT+TGG | - | chr7_3:70865000-70865019 | None:intergenic | 45.0% | |
| ! | GGAGGAAGAGGAAGCATAAA+CGG | + | chr7_3:70865070-70865089 | Msa1120970:CDS | 45.0% |
| !! | AAAAATTAATTAAAGAAAAA+CGG | - | chr7_3:70863694-70863713 | None:intergenic | 5.0% |
| !! | AAAAATTAATTAAAGAAAAA+CGG | - | chr7_3:70863694-70863713 | None:intergenic | 5.0% |
| !!! | AATTATGTTTTTATTTTATT+AGG | + | chr7_3:70864337-70864356 | Msa1120970:intron | 5.0% |
| !!! | ATTATGTTTTTATTTTATTA+GGG | + | chr7_3:70864338-70864357 | Msa1120970:intron | 5.0% |
| ! | CATTGATGGCAGCCCAGAAA+AGG | - | chr7_3:70862015-70862034 | None:intergenic | 50.0% |
| ! | GATGCGATCACCAGCATTGA+TGG | - | chr7_3:70862029-70862048 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | + | chr7_3:70862048-70862067 | Msa1120970:CDS | 50.0% |
| GATACTCGGGAACTTGGCTT+GGG | + | chr7_3:70862770-70862789 | Msa1120970:intron | 50.0% | |
| CCCAGGCTCTATGAAATTCC+TGG | + | chr7_3:70862978-70862997 | Msa1120970:intron | 50.0% | |
| GCCAGGAATTTCATAGAGCC+TGG | - | chr7_3:70862982-70863001 | None:intergenic | 50.0% | |
| TGACAACAGCGATGTCACCA+GGG | + | chr7_3:70863408-70863427 | Msa1120970:intron | 50.0% | |
| !! | CAAATTTTGGAGGCTCGGCT+CGG | - | chr7_3:70863463-70863482 | None:intergenic | 50.0% |
| GAGCCGAGCCTCCAAAATTT+GGG | + | chr7_3:70863462-70863481 | Msa1120970:intron | 50.0% | |
| AGCCGAGCCTCCAAAATTTG+GGG | + | chr7_3:70863463-70863482 | Msa1120970:intron | 50.0% | |
| TCCCTGAGTAATTGGAGGCT+CGG | - | chr7_3:70864383-70864402 | None:intergenic | 50.0% | |
| AGCCTCCAATTACTCAGGGA+CGG | + | chr7_3:70864383-70864402 | Msa1120970:intron | 50.0% | |
| CAGTGAGGGAAAAGGATGCA+GGG | + | chr7_3:70865049-70865068 | Msa1120970:intron | 50.0% | |
| AAAAGGATGCAGGGAGGAAG+AGG | + | chr7_3:70865058-70865077 | Msa1120970:CDS | 50.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | + | chr7_3:70862016-70862035 | Msa1120970:CDS | 55.0% | |
| !! | TCGCATCGAGAGTGCCTTGA+AGG | + | chr7_3:70862042-70862061 | Msa1120970:CDS | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | + | chr7_3:70862769-70862788 | Msa1120970:intron | 55.0% | |
| CTGACAACAGCGATGTCACC+AGG | + | chr7_3:70863407-70863426 | Msa1120970:intron | 55.0% | |
| CGAGCCGAGCCTCCAAAATT+TGG | + | chr7_3:70863461-70863480 | Msa1120970:intron | 55.0% | |
| GCCGAGCCTCCAAAATTTGG+GGG | + | chr7_3:70863464-70863483 | Msa1120970:intron | 55.0% | |
| !! | GCCCCCAAATTTTGGAGGCT+CGG | - | chr7_3:70863468-70863487 | None:intergenic | 55.0% |
| AGCCGAGCCTCCAATTACTC+AGG | + | chr7_3:70864378-70864397 | Msa1120970:intron | 55.0% | |
| GCCGAGCCTCCAATTACTCA+GGG | + | chr7_3:70864379-70864398 | Msa1120970:intron | 55.0% | |
| ! | ACGGTGACTAGCCCAAGAAC+AGG | - | chr7_3:70864902-70864921 | None:intergenic | 55.0% |
| ! | CCTGCATCCTTTTCCCTCAC+TGG | - | chr7_3:70865051-70865070 | None:intergenic | 55.0% |
| CCAGTGAGGGAAAAGGATGC+AGG | + | chr7_3:70865048-70865067 | Msa1120970:intron | 55.0% | |
| TGAGGGAAAAGGATGCAGGG+AGG | + | chr7_3:70865052-70865071 | Msa1120970:CDS | 55.0% | |
| ! | GTGTATACAGTGGCGGAGCC+AGG | - | chr7_3:70862999-70863018 | None:intergenic | 60.0% |
| AACAGCGATGTCACCAGGGC+CGG | + | chr7_3:70863412-70863431 | Msa1120970:intron | 60.0% | |
| CAGCTCACGCTACTACCGCT+AGG | - | chr7_3:70863577-70863596 | None:intergenic | 60.0% | |
| GGCCGTCCCTGAGTAATTGG+AGG | - | chr7_3:70864388-70864407 | None:intergenic | 60.0% | |
| CAGGGCCGTCCCTGAGTAAT+TGG | - | chr7_3:70864391-70864410 | None:intergenic | 60.0% | |
| CAATTACTCAGGGACGGCCC+TGG | + | chr7_3:70864389-70864408 | Msa1120970:intron | 60.0% | |
| TAGCTAGGGCGGCCTGTTCT+TGG | + | chr7_3:70864887-70864906 | Msa1120970:intron | 60.0% | |
| AGCTAGGGCGGCCTGTTCTT+GGG | + | chr7_3:70864888-70864907 | Msa1120970:intron | 60.0% | |
| TGTTTGCGCTCCCTCGAGGC+CGG | - | chr7_3:70863434-70863453 | None:intergenic | 65.0% | |
| GAGCTGTTTGCGCTCCCTCG+AGG | - | chr7_3:70863438-70863457 | None:intergenic | 65.0% | |
| TGTCACCAGGGCCGGCCTCG+AGG | + | chr7_3:70863420-70863439 | Msa1120970:intron | 75.0% | |
| GTCACCAGGGCCGGCCTCGA+GGG | + | chr7_3:70863421-70863440 | Msa1120970:intron | 75.0% | |
| ! | CGCTCCCTCGAGGCCGGCCC+TGG | - | chr7_3:70863428-70863447 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 70861375 | 70865122 | 70861375 | ID=Msa1120970;Name=Msa1120970 |
| chr7_3 | mRNA | 70861375 | 70865122 | 70861375 | ID=Msa1120970-mRNA-1;Parent=Msa1120970;Name=Msa1120970-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.16|0|0.28|0.16|0.42|7|0|180 |
| chr7_3 | exon | 70861375 | 70861485 | 70861375 | ID=Msa1120970-mRNA-1:exon:18041;Parent=Msa1120970-mRNA-1 |
| chr7_3 | exon | 70861663 | 70861669 | 70861663 | ID=Msa1120970-mRNA-1:exon:18042;Parent=Msa1120970-mRNA-1 |
| chr7_3 | exon | 70861738 | 70861744 | 70861738 | ID=Msa1120970-mRNA-1:exon:18043;Parent=Msa1120970-mRNA-1 |
| chr7_3 | exon | 70861813 | 70861819 | 70861813 | ID=Msa1120970-mRNA-1:exon:18044;Parent=Msa1120970-mRNA-1 |
| chr7_3 | exon | 70861980 | 70862192 | 70861980 | ID=Msa1120970-mRNA-1:exon:18045;Parent=Msa1120970-mRNA-1 |
| chr7_3 | exon | 70862621 | 70862747 | 70862621 | ID=Msa1120970-mRNA-1:exon:18046;Parent=Msa1120970-mRNA-1 |
| chr7_3 | exon | 70865052 | 70865122 | 70865052 | ID=Msa1120970-mRNA-1:exon:18047;Parent=Msa1120970-mRNA-1 |
| chr7_3 | CDS | 70861375 | 70861485 | 70861375 | ID=Msa1120970-mRNA-1:cds;Parent=Msa1120970-mRNA-1 |
| chr7_3 | CDS | 70861663 | 70861669 | 70861663 | ID=Msa1120970-mRNA-1:cds;Parent=Msa1120970-mRNA-1 |
| chr7_3 | CDS | 70861738 | 70861744 | 70861738 | ID=Msa1120970-mRNA-1:cds;Parent=Msa1120970-mRNA-1 |
| chr7_3 | CDS | 70861813 | 70861819 | 70861813 | ID=Msa1120970-mRNA-1:cds;Parent=Msa1120970-mRNA-1 |
| chr7_3 | CDS | 70861980 | 70862192 | 70861980 | ID=Msa1120970-mRNA-1:cds;Parent=Msa1120970-mRNA-1 |
| chr7_3 | CDS | 70862621 | 70862747 | 70862621 | ID=Msa1120970-mRNA-1:cds;Parent=Msa1120970-mRNA-1 |
| chr7_3 | CDS | 70865052 | 70865122 | 70865052 | ID=Msa1120970-mRNA-1:cds;Parent=Msa1120970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
