Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668260 | XP_003594552.1 | 96.970 | 132 | 4 | 0 | 106 | 237 | 71 | 202 | 2.23e-83 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668260 | sp|Q9SD20|MS5L2_ARATH | 62.687 | 134 | 50 | 0 | 104 | 237 | 48 | 181 | 2.56e-52 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668260 | G7IKX2 | 96.970 | 132 | 4 | 0 | 106 | 237 | 71 | 202 | 1.06e-83 | 272 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0668260 | 0.817228 | 3.676929e-52 | -8.615850e-47 |
| Msa0016580 | Msa0668260 | 0.841578 | 4.364295e-58 | -8.615850e-47 |
| Msa0110270 | Msa0668260 | 0.822594 | 2.178769e-53 | -8.615850e-47 |
| Msa0636170 | Msa0668260 | 0.800777 | 1.229414e-48 | -8.615850e-47 |
| Msa0639610 | Msa0668260 | 0.802626 | 5.130928e-49 | -8.615850e-47 |
| Msa0668260 | Msa0678930 | 0.818704 | 1.705558e-52 | -8.615850e-47 |
| Msa0668260 | Msa0686270 | 0.812784 | 3.560726e-51 | -8.615850e-47 |
| Msa0668260 | Msa0726140 | 0.819620 | 1.055666e-52 | -8.615850e-47 |
| Msa0668260 | Msa0733290 | 0.825324 | 4.987713e-54 | -8.615850e-47 |
| Msa0668260 | Msa0741990 | 0.816466 | 5.451116e-52 | -8.615850e-47 |
| Msa0668260 | Msa0743810 | 0.829467 | 5.064691e-55 | -8.615850e-47 |
| Msa0668260 | Msa0745060 | 0.808748 | 2.658880e-50 | -8.615850e-47 |
| Msa0668260 | Msa0766630 | 0.831111 | 2.008405e-55 | -8.615850e-47 |
| Msa0668260 | Msa0783160 | 0.805403 | 1.357649e-49 | -8.615850e-47 |
| Msa0668260 | Msa0811080 | 0.819916 | 9.034410e-53 | -8.615850e-47 |
| Msa0668260 | Msa0825860 | 0.808136 | 3.592384e-50 | -8.615850e-47 |
| Msa0668260 | Msa0846330 | 0.805459 | 1.321674e-49 | -8.615850e-47 |
| Msa0668260 | Msa0846350 | 0.829552 | 4.829101e-55 | -8.615850e-47 |
| Msa0668260 | Msa0885280 | 0.803210 | 3.885886e-49 | -8.615850e-47 |
| Msa0668260 | Msa0885290 | 0.814835 | 1.258214e-51 | -8.615850e-47 |
| Msa0668260 | Msa0907260 | 0.809886 | 1.515635e-50 | -8.615850e-47 |
| Msa0668260 | Msa0954910 | 0.802939 | 4.420741e-49 | -8.615850e-47 |
| Msa0668260 | Msa0956270 | 0.815711 | 8.037128e-52 | -8.615850e-47 |
| Msa0668260 | Msa0981370 | 0.820723 | 5.898143e-53 | -8.615850e-47 |
| Msa0668260 | Msa1016280 | 0.807383 | 5.191833e-50 | -8.615850e-47 |
| Msa0668260 | Msa1024240 | 0.802517 | 5.402896e-49 | -8.615850e-47 |
| Msa0668260 | Msa1025360 | 0.809437 | 1.893140e-50 | -8.615850e-47 |
| Msa0668260 | Msa1025370 | 0.800692 | 1.279200e-48 | -8.615850e-47 |
| Msa0668260 | Msa1044830 | 0.803559 | 3.290307e-49 | -8.615850e-47 |
| Msa0668260 | Msa1044840 | 0.810502 | 1.116326e-50 | -8.615850e-47 |
| Msa0668260 | Msa1092990 | 0.803842 | 2.874241e-49 | -8.615850e-47 |
| Msa0668260 | Msa1096580 | 0.812324 | 4.490314e-51 | -8.615850e-47 |
| Msa0668260 | Msa1100980 | 0.812040 | 5.177659e-51 | -8.615850e-47 |
| Msa0668260 | Msa1120970 | 0.818280 | 2.128304e-52 | -8.615850e-47 |
| Msa0668260 | Msa1136090 | 0.802476 | 5.508821e-49 | -8.615850e-47 |
| Msa0668260 | Msa1146110 | 0.809515 | 1.821247e-50 | -8.615850e-47 |
| Msa0668260 | Msa1160670 | 0.827681 | 1.368047e-54 | -8.615850e-47 |
| Msa0668260 | Msa1164120 | 0.802431 | 5.629837e-49 | -8.615850e-47 |
| Msa0668260 | Msa1179770 | 0.804317 | 2.289699e-49 | -8.615850e-47 |
| Msa0668260 | Msa1187940 | 0.809186 | 2.142833e-50 | -8.615850e-47 |
| Msa0668260 | Msa1187950 | 0.831509 | 1.603204e-55 | -8.615850e-47 |
| Msa0668260 | Msa1192640 | 0.816471 | 5.437687e-52 | -8.615850e-47 |
| Msa0668260 | Msa1253000 | 0.811852 | 5.689789e-51 | -8.615850e-47 |
| Msa0668260 | Msa1269670 | 0.804654 | 1.947612e-49 | -8.615850e-47 |
| Msa0668260 | Msa1270230 | 0.800332 | 1.514915e-48 | -8.615850e-47 |
| Msa0668260 | Msa1270240 | 0.807588 | 4.697138e-50 | -8.615850e-47 |
| Msa0668260 | Msa1283330 | 0.817315 | 3.514618e-52 | -8.615850e-47 |
| Msa0668260 | Msa1284680 | 0.813800 | 2.130688e-51 | -8.615850e-47 |
| Msa0668260 | Msa1285930 | 0.836078 | 1.155483e-56 | -8.615850e-47 |
| Msa0668260 | Msa1287800 | 0.811736 | 6.031397e-51 | -8.615850e-47 |
| Msa0668260 | Msa1287810 | 0.814096 | 1.833395e-51 | -8.615850e-47 |
| Msa0668260 | Msa1320300 | 0.803960 | 2.716350e-49 | -8.615850e-47 |
| Msa0668260 | Msa1397860 | 0.804143 | 2.488079e-49 | -8.615850e-47 |
| Msa0668260 | Msa1404000 | 0.800165 | 1.637836e-48 | -8.615850e-47 |
| Msa0668260 | Msa1422180 | 0.816270 | 6.030344e-52 | -8.615850e-47 |
| Msa0668260 | Msa1433120 | 0.822649 | 2.115969e-53 | -8.615850e-47 |
| Msa0142220 | Msa0668260 | 0.839920 | 1.187074e-57 | -8.615850e-47 |
| Msa0153910 | Msa0668260 | 0.813901 | 2.023696e-51 | -8.615850e-47 |
| Msa0235140 | Msa0668260 | 0.810775 | 9.747164e-51 | -8.615850e-47 |
| Msa0402290 | Msa0668260 | 0.806552 | 7.782332e-50 | -8.615850e-47 |
| Msa0407750 | Msa0668260 | 0.807914 | 4.003986e-50 | -8.615850e-47 |
| Msa0414420 | Msa0668260 | 0.807407 | 5.130861e-50 | -8.615850e-47 |
| Msa0435230 | Msa0668260 | 0.808936 | 2.423981e-50 | -8.615850e-47 |
| Msa0436800 | Msa0668260 | 0.817465 | 3.251744e-52 | -8.615850e-47 |
| Msa0450000 | Msa0668260 | 0.803597 | 3.231831e-49 | -8.615850e-47 |
| Msa0452900 | Msa0668260 | 0.811436 | 7.007315e-51 | -8.615850e-47 |
| Msa0453120 | Msa0668260 | 0.807162 | 5.784725e-50 | -8.615850e-47 |
| Msa0267010 | Msa0668260 | 0.802199 | 6.283489e-49 | -8.615850e-47 |
| Msa0270520 | Msa0668260 | 0.804767 | 1.844634e-49 | -8.615850e-47 |
| Msa0342240 | Msa0668260 | 0.805607 | 1.230180e-49 | -8.615850e-47 |
| Msa0360510 | Msa0668260 | 0.813308 | 2.734035e-51 | -8.615850e-47 |
| Msa0564890 | Msa0668260 | 0.831882 | 1.297706e-55 | -8.615850e-47 |
| Msa0589780 | Msa0668260 | 0.974342 | 5.481754e-138 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668260 | MtrunA17_Chr2g0292681 | 96.970 | 132 | 4 | 0 | 106 | 237 | 71 | 202 | 2.05e-87 | 272 |
| Msa0668260 | MtrunA17_Chr7g0237581 | 62.963 | 135 | 50 | 0 | 106 | 240 | 44 | 178 | 2.18e-55 | 181 |
| Msa0668260 | MtrunA17_Chr8g0371521 | 63.433 | 134 | 49 | 0 | 104 | 237 | 54 | 187 | 2.94e-54 | 182 |
| Msa0668260 | MtrunA17_Chr7g0237621 | 63.636 | 132 | 48 | 0 | 106 | 237 | 56 | 187 | 4.12e-54 | 177 |
| Msa0668260 | MtrunA17_Chr2g0292671 | 92.771 | 83 | 6 | 0 | 155 | 237 | 2 | 84 | 7.95e-51 | 165 |
| Msa0668260 | MtrunA17_Chr3g0077351 | 100.000 | 38 | 0 | 0 | 69 | 106 | 45 | 82 | 3.70e-17 | 80.1 |
| Msa0668260 | MtrunA17_Chr2g0292661 | 88.889 | 36 | 4 | 0 | 106 | 141 | 68 | 103 | 1.73e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668260 | AT3G51280.1 | 62.687 | 134 | 50 | 0 | 104 | 237 | 48 | 181 | 2.61e-53 | 179 |
| Msa0668260 | AT4G20900.2 | 62.121 | 132 | 50 | 0 | 106 | 237 | 71 | 202 | 7.71e-53 | 178 |
| Msa0668260 | AT4G20900.1 | 62.121 | 132 | 50 | 0 | 106 | 237 | 71 | 202 | 9.23e-53 | 178 |
| Msa0668260 | AT5G48850.1 | 59.091 | 132 | 54 | 0 | 106 | 237 | 47 | 178 | 2.77e-52 | 173 |
| Msa0668260 | AT1G04770.1 | 57.037 | 135 | 58 | 0 | 106 | 240 | 40 | 174 | 3.17e-49 | 165 |
| Msa0668260 | AT5G44330.1 | 48.663 | 187 | 82 | 3 | 56 | 237 | 18 | 195 | 2.80e-47 | 164 |
Find 76 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCGACCGCCCGGGGTCGC+CGG | 0.247170 | 4_4:+9176223 | None:intergenic |
| GGCGACCCCGGGCGGTCGCC+CGG | 0.272076 | 4_4:-9176221 | Msa0668260:CDS |
| ATCTTCCCATTATGTTGTTA+TGG | 0.303528 | 4_4:-9176058 | Msa0668260:CDS |
| GGCGACCGCCCGGGGTCGCC+GGG | 0.309577 | 4_4:+9176224 | None:intergenic |
| ATCGAGCCCGGGCGACCGCC+CGG | 0.313262 | 4_4:+9176214 | None:intergenic |
| TATGGTAATAAACCATTCTA+TGG | 0.313469 | 4_4:-9176040 | Msa0668260:CDS |
| GAAATTCCTGGCTCCGCCAC+TGG | 0.324798 | 4_4:-9174484 | Msa0668260:CDS |
| TCGAGCCCGGGCGACCGCCC+GGG | 0.336818 | 4_4:+9176215 | None:intergenic |
| GAGACAGCGCCCGGCGACCC+CGG | 0.346675 | 4_4:-9176233 | Msa0668260:CDS |
| TTGTTGACTGGAACAGAATC+AGG | 0.358714 | 4_4:+9175937 | None:intergenic |
| TATTACCATAACAACATAAT+GGG | 0.359129 | 4_4:+9176053 | None:intergenic |
| AGACAGCGCCCGGCGACCCC+GGG | 0.367682 | 4_4:-9176232 | Msa0668260:CDS |
| CATCTTGGTTGAACTCTATA+CGG | 0.371370 | 4_4:-9175303 | Msa0668260:intron |
| CGAGAGTGCCTTGAAGGATA+TGG | 0.372126 | 4_4:-9175426 | Msa0668260:CDS |
| AGATAAACTTAGGAGGTAAA+TGG | 0.376022 | 4_4:+9174624 | None:intergenic |
| TTATTACCATAACAACATAA+TGG | 0.381164 | 4_4:+9176052 | None:intergenic |
| CCCAGGCTCTACGAAATTCC+TGG | 0.389464 | 4_4:-9174496 | Msa0668260:intron |
| GCGACCCCGGGCGGTCGCCC+GGG | 0.390046 | 4_4:-9176220 | Msa0668260:CDS |
| TTCTGGGCTGCCATCAATGC+TGG | 0.391601 | 4_4:-9175458 | Msa0668260:CDS |
| GACGCGATCACCAGCATTGA+TGG | 0.392146 | 4_4:+9175448 | None:intergenic |
| GGTTCTATGTCTAGAAGAAT+TGG | 0.399284 | 4_4:-9175988 | Msa0668260:CDS |
| CATTGATGGCAGCCCAGAAA+AGG | 0.416287 | 4_4:+9175462 | None:intergenic |
| TCGCGTCGAGAGTGCCTTGA+AGG | 0.421679 | 4_4:-9175432 | Msa0668260:CDS |
| AACTAAAGCCATATCCTTCA+AGG | 0.422487 | 4_4:+9175418 | None:intergenic |
| CAGTTAGTGGATAAAGATCC+AGG | 0.435700 | 4_4:-9175497 | Msa0668260:CDS |
| AGGAACTTGCGGATCGAGCC+CGG | 0.436179 | 4_4:+9176202 | None:intergenic |
| CTTCACCCAGTGGCGGAGCC+AGG | 0.440741 | 4_4:+9174478 | None:intergenic |
| GGATACTCGGGAACTTGGCT+TGG | 0.447870 | 4_4:-9174705 | Msa0668260:CDS |
| GGAATCTCTTGACAACATCT+TGG | 0.450411 | 4_4:-9175318 | Msa0668260:CDS |
| TATCTAGCACGCTATTTGAC+AGG | 0.452613 | 4_4:-9174606 | Msa0668260:intron |
| CAAGAGATATCAAGGATACT+CGG | 0.452807 | 4_4:-9174718 | Msa0668260:CDS |
| TTGTTACTGTTATAGAGGTC+AGG | 0.460441 | 4_4:-9174868 | Msa0668260:intron |
| TTCTGTTCCAGTCAACAAAC+AGG | 0.461427 | 4_4:-9175932 | Msa0668260:intron |
| TCTCTGCCCTTCTGATTCTC+AGG | 0.462514 | 4_4:-9175339 | Msa0668260:CDS |
| GCCTTTCTGAGATTTCTTTG+CGG | 0.462651 | 4_4:+9174646 | None:intergenic |
| GCAGTGGCGGAGACAGCGCC+CGG | 0.472945 | 4_4:-9176242 | Msa0668260:CDS |
| TAGTTATGAAGCAACTGAAC+CGG | 0.474084 | 4_4:-9175400 | Msa0668260:CDS |
| AAAAGGGAAATTGCTTTACC+TGG | 0.474611 | 4_4:+9175479 | None:intergenic |
| GATACTCGGGAACTTGGCTT+GGG | 0.475595 | 4_4:-9174704 | Msa0668260:CDS |
| ATCAAGGATACTCGGGAACT+TGG | 0.479935 | 4_4:-9174710 | Msa0668260:CDS |
| CGAGCCCGGGCGACCGCCCG+GGG | 0.485962 | 4_4:+9176216 | None:intergenic |
| TGGAGTGGGCAAGCAAATTA+CGG | 0.488855 | 4_4:-9176270 | Msa0668260:CDS |
| CTGGCTCCGCCACTGGGTGA+AGG | 0.491068 | 4_4:-9174477 | None:intergenic |
| AGCAGAACCTGTTTGTTGAC+TGG | 0.503298 | 4_4:+9175925 | None:intergenic |
| GGAAGGGTTGATGAAGAGAT+TGG | 0.505590 | 4_4:-9174847 | Msa0668260:CDS |
| GTGCTGAACAAGAGATATCA+AGG | 0.512190 | 4_4:-9174726 | Msa0668260:CDS |
| ATTGATGGCAGCCCAGAAAA+GGG | 0.512233 | 4_4:+9175463 | None:intergenic |
| GAAGATGGTATGACATATGT+TGG | 0.513644 | 4_4:-9174796 | Msa0668260:CDS |
| GCAAATTACGGTGAAGGCAG+TGG | 0.517284 | 4_4:-9176258 | Msa0668260:CDS |
| CAGCGCCCGGCGACCCCGGG+CGG | 0.527981 | 4_4:-9176229 | Msa0668260:CDS |
| ATAGCGTGCTAGATAAACTT+AGG | 0.531638 | 4_4:+9174614 | None:intergenic |
| GTTGTTGAAGTGCCATAGAA+TGG | 0.535118 | 4_4:+9176028 | None:intergenic |
| AAATTCCTGGCTCCGCCACT+GGG | 0.537024 | 4_4:-9174483 | Msa0668260:CDS |
| GAGAATCAGAAGGGCAGAGA+TGG | 0.537437 | 4_4:+9175342 | None:intergenic |
| TGCTTGCCTTCACCCAGTGG+CGG | 0.537610 | 4_4:+9174471 | None:intergenic |
| ATAACAACATAATGGGAAGA+TGG | 0.540050 | 4_4:+9176060 | None:intergenic |
| ACAAAACATGCAAGATCTCA+AGG | 0.546544 | 4_4:-9174766 | Msa0668260:CDS |
| ATTCGATTGCTTCATCCGAC+CGG | 0.551071 | 4_4:+9175381 | None:intergenic |
| CAACATTCTCAGAGGTTCGA+AGG | 0.558149 | 4_4:-9176009 | Msa0668260:CDS |
| TACTGTTATAGAGGTCAGGA+AGG | 0.560755 | 4_4:-9174864 | Msa0668260:intron |
| GGAACTTGCGGATCGAGCCC+GGG | 0.573396 | 4_4:+9176203 | None:intergenic |
| AAGAGATATCAAGGATACTC+GGG | 0.578149 | 4_4:-9174717 | Msa0668260:CDS |
| AAGTTGAAGCAAATTGAAGA+TGG | 0.583679 | 4_4:-9174811 | Msa0668260:CDS |
| GGGCAAGCAAATTACGGTGA+AGG | 0.593200 | 4_4:-9176264 | Msa0668260:CDS |
| TCTTGCTTGCCTTCACCCAG+TGG | 0.597736 | 4_4:+9174468 | None:intergenic |
| AGAGATTCCTGAGAATCAGA+AGG | 0.602703 | 4_4:+9175332 | None:intergenic |
| ATGGTATGACATATGTTGGA+AGG | 0.607080 | 4_4:-9174792 | Msa0668260:CDS |
| ACCGCAAAGAAATCTCAGAA+AGG | 0.621360 | 4_4:-9174647 | Msa0668260:CDS |
| GCGTGCTAGATAAACTTAGG+AGG | 0.633166 | 4_4:+9174617 | None:intergenic |
| GAGATTCCTGAGAATCAGAA+GGG | 0.645235 | 4_4:+9175333 | None:intergenic |
| CAAAACATGCAAGATCTCAA+GGG | 0.648943 | 4_4:-9174765 | Msa0668260:CDS |
| AATTACGGTGAAGGCAGTGG+CGG | 0.652531 | 4_4:-9176255 | Msa0668260:CDS |
| CACTTCAACAACATTCTCAG+AGG | 0.654400 | 4_4:-9176017 | Msa0668260:CDS |
| ACTGTTATAGAGGTCAGGAA+GGG | 0.657103 | 4_4:-9174863 | Msa0668260:intron |
| ACAACATAATGGGAAGATGG+AGG | 0.658822 | 4_4:+9176063 | None:intergenic |
| TATGAAGCAACTGAACCGGT+CGG | 0.679096 | 4_4:-9175396 | Msa0668260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr4_4:9174896-9174915 | Msa0668260:intron | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr4_4:9174897-9174916 | Msa0668260:intron | 10.0% |
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr4_4:9174896-9174915 | Msa0668260:intron | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr4_4:9174897-9174916 | Msa0668260:intron | 10.0% |
| !! | ACTTCAAAAACAAAAAAAAT+TGG | - | chr4_4:9174639-9174658 | Msa0668260:CDS | 15.0% |
| !! | CTTCAAAAACAAAAAAAATT+GGG | - | chr4_4:9174640-9174659 | Msa0668260:CDS | 15.0% |
| !!! | TGCAAAAATTTTTAAAAAAG+AGG | + | chr4_4:9176268-9176287 | None:intergenic | 15.0% |
| !! | ACTTCAAAAACAAAAAAAAT+TGG | - | chr4_4:9174639-9174658 | Msa0668260:CDS | 15.0% |
| !! | CTTCAAAAACAAAAAAAATT+GGG | - | chr4_4:9174640-9174659 | Msa0668260:CDS | 15.0% |
| !!! | TGCAAAAATTTTTAAAAAAG+AGG | + | chr4_4:9176268-9176287 | None:intergenic | 15.0% |
| !! | TATTACCATAACAACATAAT+GGG | + | chr4_4:9174745-9174764 | None:intergenic | 20.0% |
| !! | TTATTACCATAACAACATAA+TGG | + | chr4_4:9174746-9174765 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | - | chr4_4:9175224-9175243 | Msa0668260:intron | 20.0% |
| !! | TATTACCATAACAACATAAT+GGG | + | chr4_4:9174745-9174764 | None:intergenic | 20.0% |
| !! | TTATTACCATAACAACATAA+TGG | + | chr4_4:9174746-9174765 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | - | chr4_4:9175224-9175243 | Msa0668260:intron | 20.0% |
| ! | AAATTACAAGCAAGAAAAAG+TGG | - | chr4_4:9174505-9174524 | Msa0668260:intron | 25.0% |
| !!! | TTGTTTTTGAAGTGTGTAAA+TGG | + | chr4_4:9174632-9174651 | None:intergenic | 25.0% |
| ! | ACAAAAAAAATTGGGCAAAT+TGG | - | chr4_4:9174648-9174667 | Msa0668260:CDS | 25.0% |
| ! | CAAAAAAAATTGGGCAAATT+GGG | - | chr4_4:9174649-9174668 | Msa0668260:CDS | 25.0% |
| ! | ATCTATACTCTTTACAACAA+AGG | - | chr4_4:9174675-9174694 | Msa0668260:CDS | 25.0% |
| ! | TCTATACTCTTTACAACAAA+GGG | - | chr4_4:9174676-9174695 | Msa0668260:CDS | 25.0% |
| ! | TATGGTAATAAACCATTCTA+TGG | - | chr4_4:9174755-9174774 | Msa0668260:CDS | 25.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr4_4:9175118-9175137 | Msa0668260:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr4_4:9175119-9175138 | Msa0668260:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | - | chr4_4:9175240-9175259 | Msa0668260:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | + | chr4_4:9175620-9175639 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | - | chr4_4:9175643-9175662 | Msa0668260:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | + | chr4_4:9175690-9175709 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | - | chr4_4:9175688-9175707 | Msa0668260:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | - | chr4_4:9175704-9175723 | Msa0668260:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | - | chr4_4:9175859-9175878 | Msa0668260:intron | 25.0% |
| ! | GTATATTGTTACTGTTATAG+AGG | - | chr4_4:9175922-9175941 | Msa0668260:intron | 25.0% |
| ! | ACAATTTGAATTAAGAGAGA+TGG | + | chr4_4:9176222-9176241 | None:intergenic | 25.0% |
| ! | AAATTACAAGCAAGAAAAAG+TGG | - | chr4_4:9174505-9174524 | Msa0668260:intron | 25.0% |
| !!! | TTGTTTTTGAAGTGTGTAAA+TGG | + | chr4_4:9174632-9174651 | None:intergenic | 25.0% |
| ! | ACAAAAAAAATTGGGCAAAT+TGG | - | chr4_4:9174648-9174667 | Msa0668260:CDS | 25.0% |
| ! | CAAAAAAAATTGGGCAAATT+GGG | - | chr4_4:9174649-9174668 | Msa0668260:CDS | 25.0% |
| ! | ATCTATACTCTTTACAACAA+AGG | - | chr4_4:9174675-9174694 | Msa0668260:CDS | 25.0% |
| ! | TCTATACTCTTTACAACAAA+GGG | - | chr4_4:9174676-9174695 | Msa0668260:CDS | 25.0% |
| ! | TATGGTAATAAACCATTCTA+TGG | - | chr4_4:9174755-9174774 | Msa0668260:CDS | 25.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr4_4:9175118-9175137 | Msa0668260:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr4_4:9175119-9175138 | Msa0668260:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | - | chr4_4:9175240-9175259 | Msa0668260:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | + | chr4_4:9175620-9175639 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | - | chr4_4:9175643-9175662 | Msa0668260:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | + | chr4_4:9175690-9175709 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | - | chr4_4:9175688-9175707 | Msa0668260:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | - | chr4_4:9175704-9175723 | Msa0668260:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | - | chr4_4:9175859-9175878 | Msa0668260:intron | 25.0% |
| ! | GTATATTGTTACTGTTATAG+AGG | - | chr4_4:9175922-9175941 | Msa0668260:intron | 25.0% |
| ! | ACAATTTGAATTAAGAGAGA+TGG | + | chr4_4:9176222-9176241 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTGTGTAAATGGA+GGG | + | chr4_4:9174628-9174647 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTGTGTAAATGG+AGG | + | chr4_4:9174629-9174648 | None:intergenic | 30.0% |
| ! | ATAACAACATAATGGGAAGA+TGG | + | chr4_4:9174738-9174757 | None:intergenic | 30.0% |
| ATCTTCCCATTATGTTGTTA+TGG | - | chr4_4:9174737-9174756 | Msa0668260:CDS | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr4_4:9174968-9174987 | Msa0668260:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr4_4:9174969-9174988 | Msa0668260:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr4_4:9174968-9174987 | Msa0668260:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr4_4:9174969-9174988 | Msa0668260:intron | 30.0% | |
| AATTCATGAGATGTAAGAGA+AGG | - | chr4_4:9175181-9175200 | Msa0668260:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | - | chr4_4:9175285-9175304 | Msa0668260:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | - | chr4_4:9175321-9175340 | Msa0668260:CDS | 30.0% |
| TTGAACTCTATACGGTATAA+GGG | - | chr4_4:9175500-9175519 | Msa0668260:intron | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | + | chr4_4:9175546-9175565 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | - | chr4_4:9175646-9175665 | Msa0668260:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | - | chr4_4:9175647-9175666 | Msa0668260:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | - | chr4_4:9175802-9175821 | Msa0668260:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | - | chr4_4:9175872-9175891 | Msa0668260:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | - | chr4_4:9175984-9176003 | Msa0668260:CDS | 30.0% | |
| AGATAAACTTAGGAGGTAAA+TGG | + | chr4_4:9176174-9176193 | None:intergenic | 30.0% | |
| !!! | TTTTGAAGTGTGTAAATGGA+GGG | + | chr4_4:9174628-9174647 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTGTGTAAATGG+AGG | + | chr4_4:9174629-9174648 | None:intergenic | 30.0% |
| ! | ATAACAACATAATGGGAAGA+TGG | + | chr4_4:9174738-9174757 | None:intergenic | 30.0% |
| ATCTTCCCATTATGTTGTTA+TGG | - | chr4_4:9174737-9174756 | Msa0668260:CDS | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr4_4:9174968-9174987 | Msa0668260:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr4_4:9174969-9174988 | Msa0668260:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr4_4:9174968-9174987 | Msa0668260:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr4_4:9174969-9174988 | Msa0668260:intron | 30.0% | |
| AATTCATGAGATGTAAGAGA+AGG | - | chr4_4:9175181-9175200 | Msa0668260:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | - | chr4_4:9175285-9175304 | Msa0668260:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | - | chr4_4:9175321-9175340 | Msa0668260:CDS | 30.0% |
| TTGAACTCTATACGGTATAA+GGG | - | chr4_4:9175500-9175519 | Msa0668260:intron | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | + | chr4_4:9175546-9175565 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | - | chr4_4:9175646-9175665 | Msa0668260:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | - | chr4_4:9175647-9175666 | Msa0668260:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | - | chr4_4:9175802-9175821 | Msa0668260:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | - | chr4_4:9175872-9175891 | Msa0668260:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | - | chr4_4:9175984-9176003 | Msa0668260:CDS | 30.0% | |
| AGATAAACTTAGGAGGTAAA+TGG | + | chr4_4:9176174-9176193 | None:intergenic | 30.0% | |
| ! | TGCTTGTAATTTTGCAACGA+TGG | + | chr4_4:9174497-9174516 | None:intergenic | 35.0% |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr4_4:9174807-9174826 | Msa0668260:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr4_4:9174913-9174932 | Msa0668260:intron | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | + | chr4_4:9175319-9175338 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | - | chr4_4:9175320-9175339 | Msa0668260:CDS | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | + | chr4_4:9175380-9175399 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | - | chr4_4:9175395-9175414 | Msa0668260:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | - | chr4_4:9175492-9175511 | Msa0668260:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | - | chr4_4:9175499-9175518 | Msa0668260:intron | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | - | chr4_4:9175570-9175589 | Msa0668260:intron | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | - | chr4_4:9175654-9175673 | Msa0668260:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | - | chr4_4:9175819-9175838 | Msa0668260:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | + | chr4_4:9175893-9175912 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | - | chr4_4:9175890-9175909 | Msa0668260:intron | 35.0% |
| TTGTTACTGTTATAGAGGTC+AGG | - | chr4_4:9175927-9175946 | Msa0668260:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | - | chr4_4:9175999-9176018 | Msa0668260:CDS | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | - | chr4_4:9176003-9176022 | Msa0668260:CDS | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | - | chr4_4:9176029-9176048 | Msa0668260:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | - | chr4_4:9176030-9176049 | Msa0668260:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | - | chr4_4:9176077-9176096 | Msa0668260:CDS | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | - | chr4_4:9176078-9176097 | Msa0668260:CDS | 35.0% | |
| ATAGCGTGCTAGATAAACTT+AGG | + | chr4_4:9176184-9176203 | None:intergenic | 35.0% | |
| ! | TTTGCATATATTTTTCGCCC+AGG | - | chr4_4:9176282-9176301 | Msa0668260:CDS | 35.0% |
| ! | TGCTTGTAATTTTGCAACGA+TGG | + | chr4_4:9174497-9174516 | None:intergenic | 35.0% |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr4_4:9174807-9174826 | Msa0668260:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr4_4:9174913-9174932 | Msa0668260:intron | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | + | chr4_4:9175319-9175338 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | - | chr4_4:9175320-9175339 | Msa0668260:CDS | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | + | chr4_4:9175380-9175399 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | - | chr4_4:9175395-9175414 | Msa0668260:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | - | chr4_4:9175492-9175511 | Msa0668260:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | - | chr4_4:9175499-9175518 | Msa0668260:intron | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | - | chr4_4:9175570-9175589 | Msa0668260:intron | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | - | chr4_4:9175654-9175673 | Msa0668260:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | - | chr4_4:9175819-9175838 | Msa0668260:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | + | chr4_4:9175893-9175912 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | - | chr4_4:9175890-9175909 | Msa0668260:intron | 35.0% |
| TTGTTACTGTTATAGAGGTC+AGG | - | chr4_4:9175927-9175946 | Msa0668260:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | - | chr4_4:9175999-9176018 | Msa0668260:CDS | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | - | chr4_4:9176003-9176022 | Msa0668260:CDS | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | - | chr4_4:9176029-9176048 | Msa0668260:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | - | chr4_4:9176030-9176049 | Msa0668260:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | - | chr4_4:9176077-9176096 | Msa0668260:CDS | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | - | chr4_4:9176078-9176097 | Msa0668260:CDS | 35.0% | |
| ATAGCGTGCTAGATAAACTT+AGG | + | chr4_4:9176184-9176203 | None:intergenic | 35.0% | |
| ! | TTTGCATATATTTTTCGCCC+AGG | - | chr4_4:9176282-9176301 | Msa0668260:CDS | 35.0% |
| ACAAGCAAGAAAAAGTGGAG+TGG | - | chr4_4:9174510-9174529 | Msa0668260:intron | 40.0% | |
| CAAGCAAGAAAAAGTGGAGT+GGG | - | chr4_4:9174511-9174530 | Msa0668260:intron | 40.0% | |
| TAAATGGAGGGTCTAATGTG+AGG | + | chr4_4:9174616-9174635 | None:intergenic | 40.0% | |
| ATGGAGGAAAAACTGCAATC+TGG | + | chr4_4:9174719-9174738 | None:intergenic | 40.0% | |
| ! | ACAACATAATGGGAAGATGG+AGG | + | chr4_4:9174735-9174754 | None:intergenic | 40.0% |
| ! | GTTGTTGAAGTGCCATAGAA+TGG | + | chr4_4:9174770-9174789 | None:intergenic | 40.0% |
| CACTTCAACAACATTCTCAG+AGG | - | chr4_4:9174778-9174797 | Msa0668260:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr4_4:9174861-9174880 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr4_4:9174863-9174882 | Msa0668260:intron | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | - | chr4_4:9175298-9175317 | Msa0668260:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | + | chr4_4:9175465-9175484 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | + | chr4_4:9175466-9175485 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | - | chr4_4:9175477-9175496 | Msa0668260:CDS | 40.0% | |
| TACTGTTATAGAGGTCAGGA+AGG | - | chr4_4:9175931-9175950 | Msa0668260:intron | 40.0% | |
| ACTGTTATAGAGGTCAGGAA+GGG | - | chr4_4:9175932-9175951 | Msa0668260:intron | 40.0% | |
| GTGCTGAACAAGAGATATCA+AGG | - | chr4_4:9176069-9176088 | Msa0668260:CDS | 40.0% | |
| ACCGCAAAGAAATCTCAGAA+AGG | - | chr4_4:9176148-9176167 | Msa0668260:intron | 40.0% | |
| !! | GCCTTTCTGAGATTTCTTTG+CGG | + | chr4_4:9176152-9176171 | None:intergenic | 40.0% |
| TATCTAGCACGCTATTTGAC+AGG | - | chr4_4:9176189-9176208 | Msa0668260:intron | 40.0% | |
| ACAAGCAAGAAAAAGTGGAG+TGG | - | chr4_4:9174510-9174529 | Msa0668260:intron | 40.0% | |
| CAAGCAAGAAAAAGTGGAGT+GGG | - | chr4_4:9174511-9174530 | Msa0668260:intron | 40.0% | |
| TAAATGGAGGGTCTAATGTG+AGG | + | chr4_4:9174616-9174635 | None:intergenic | 40.0% | |
| ATGGAGGAAAAACTGCAATC+TGG | + | chr4_4:9174719-9174738 | None:intergenic | 40.0% | |
| ! | ACAACATAATGGGAAGATGG+AGG | + | chr4_4:9174735-9174754 | None:intergenic | 40.0% |
| ! | GTTGTTGAAGTGCCATAGAA+TGG | + | chr4_4:9174770-9174789 | None:intergenic | 40.0% |
| CACTTCAACAACATTCTCAG+AGG | - | chr4_4:9174778-9174797 | Msa0668260:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr4_4:9174861-9174880 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr4_4:9174863-9174882 | Msa0668260:intron | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | - | chr4_4:9175298-9175317 | Msa0668260:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | + | chr4_4:9175465-9175484 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | + | chr4_4:9175466-9175485 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | - | chr4_4:9175477-9175496 | Msa0668260:CDS | 40.0% | |
| TACTGTTATAGAGGTCAGGA+AGG | - | chr4_4:9175931-9175950 | Msa0668260:intron | 40.0% | |
| ACTGTTATAGAGGTCAGGAA+GGG | - | chr4_4:9175932-9175951 | Msa0668260:intron | 40.0% | |
| GTGCTGAACAAGAGATATCA+AGG | - | chr4_4:9176069-9176088 | Msa0668260:CDS | 40.0% | |
| ACCGCAAAGAAATCTCAGAA+AGG | - | chr4_4:9176148-9176167 | Msa0668260:intron | 40.0% | |
| !! | GCCTTTCTGAGATTTCTTTG+CGG | + | chr4_4:9176152-9176171 | None:intergenic | 40.0% |
| TATCTAGCACGCTATTTGAC+AGG | - | chr4_4:9176189-9176208 | Msa0668260:intron | 40.0% | |
| TGGAGTGGGCAAGCAAATTA+CGG | - | chr4_4:9174525-9174544 | Msa0668260:intron | 45.0% | |
| GGTCTAATGTGAGGAACTTG+CGG | + | chr4_4:9174607-9174626 | None:intergenic | 45.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr4_4:9174786-9174805 | Msa0668260:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr4_4:9174873-9174892 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr4_4:9174977-9174996 | Msa0668260:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr4_4:9174984-9175003 | Msa0668260:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr4_4:9174977-9174996 | Msa0668260:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr4_4:9174984-9175003 | Msa0668260:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | + | chr4_4:9175335-9175354 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | - | chr4_4:9175399-9175418 | Msa0668260:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | + | chr4_4:9175417-9175436 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | - | chr4_4:9175948-9175967 | Msa0668260:CDS | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | - | chr4_4:9176085-9176104 | Msa0668260:CDS | 45.0% | |
| GCGTGCTAGATAAACTTAGG+AGG | + | chr4_4:9176181-9176200 | None:intergenic | 45.0% | |
| TGGAGTGGGCAAGCAAATTA+CGG | - | chr4_4:9174525-9174544 | Msa0668260:intron | 45.0% | |
| GGTCTAATGTGAGGAACTTG+CGG | + | chr4_4:9174607-9174626 | None:intergenic | 45.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr4_4:9174786-9174805 | Msa0668260:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr4_4:9174873-9174892 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr4_4:9174977-9174996 | Msa0668260:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr4_4:9174984-9175003 | Msa0668260:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr4_4:9174977-9174996 | Msa0668260:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr4_4:9174984-9175003 | Msa0668260:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | + | chr4_4:9175335-9175354 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | - | chr4_4:9175399-9175418 | Msa0668260:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | + | chr4_4:9175417-9175436 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | - | chr4_4:9175948-9175967 | Msa0668260:CDS | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | - | chr4_4:9176085-9176104 | Msa0668260:CDS | 45.0% | |
| GCGTGCTAGATAAACTTAGG+AGG | + | chr4_4:9176181-9176200 | None:intergenic | 45.0% | |
| GGGCAAGCAAATTACGGTGA+AGG | - | chr4_4:9174531-9174550 | Msa0668260:intron | 50.0% | |
| GCAAATTACGGTGAAGGCAG+TGG | - | chr4_4:9174537-9174556 | Msa0668260:intron | 50.0% | |
| AATTACGGTGAAGGCAGTGG+CGG | - | chr4_4:9174540-9174559 | Msa0668260:intron | 50.0% | |
| ! | CATTGATGGCAGCCCAGAAA+AGG | + | chr4_4:9175336-9175355 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | - | chr4_4:9175369-9175388 | Msa0668260:CDS | 50.0% |
| GAGAATCAGAAGGGCAGAGA+TGG | + | chr4_4:9175456-9175475 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | - | chr4_4:9175456-9175475 | Msa0668260:CDS | 50.0% | |
| GATACTCGGGAACTTGGCTT+GGG | - | chr4_4:9176091-9176110 | Msa0668260:CDS | 50.0% | |
| CCAGGAATTTCGTAGAGCCT+GGG | + | chr4_4:9176302-9176321 | None:intergenic | 50.0% | |
| GGGCAAGCAAATTACGGTGA+AGG | - | chr4_4:9174531-9174550 | Msa0668260:intron | 50.0% | |
| GCAAATTACGGTGAAGGCAG+TGG | - | chr4_4:9174537-9174556 | Msa0668260:intron | 50.0% | |
| AATTACGGTGAAGGCAGTGG+CGG | - | chr4_4:9174540-9174559 | Msa0668260:intron | 50.0% | |
| ! | CATTGATGGCAGCCCAGAAA+AGG | + | chr4_4:9175336-9175355 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | - | chr4_4:9175369-9175388 | Msa0668260:CDS | 50.0% |
| GAGAATCAGAAGGGCAGAGA+TGG | + | chr4_4:9175456-9175475 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | - | chr4_4:9175456-9175475 | Msa0668260:CDS | 50.0% | |
| GATACTCGGGAACTTGGCTT+GGG | - | chr4_4:9176091-9176110 | Msa0668260:CDS | 50.0% | |
| CCAGGAATTTCGTAGAGCCT+GGG | + | chr4_4:9176302-9176321 | None:intergenic | 50.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | - | chr4_4:9175337-9175356 | Msa0668260:CDS | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | + | chr4_4:9175350-9175369 | None:intergenic | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | - | chr4_4:9176090-9176109 | Msa0668260:CDS | 55.0% | |
| CCCAGGCTCTACGAAATTCC+TGG | - | chr4_4:9176299-9176318 | Msa0668260:CDS | 55.0% | |
| GCCAGGAATTTCGTAGAGCC+TGG | + | chr4_4:9176303-9176322 | None:intergenic | 55.0% | |
| AAATTCCTGGCTCCGCCACT+GGG | - | chr4_4:9176312-9176331 | Msa0668260:CDS | 55.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | - | chr4_4:9175337-9175356 | Msa0668260:CDS | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | + | chr4_4:9175350-9175369 | None:intergenic | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | - | chr4_4:9176090-9176109 | Msa0668260:CDS | 55.0% | |
| CCCAGGCTCTACGAAATTCC+TGG | - | chr4_4:9176299-9176318 | Msa0668260:CDS | 55.0% | |
| GCCAGGAATTTCGTAGAGCC+TGG | + | chr4_4:9176303-9176322 | None:intergenic | 55.0% | |
| AAATTCCTGGCTCCGCCACT+GGG | - | chr4_4:9176312-9176331 | Msa0668260:CDS | 55.0% | |
| AGGAACTTGCGGATCGAGCC+CGG | + | chr4_4:9174596-9174615 | None:intergenic | 60.0% | |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | - | chr4_4:9175363-9175382 | Msa0668260:CDS | 60.0% |
| GAAATTCCTGGCTCCGCCAC+TGG | - | chr4_4:9176311-9176330 | Msa0668260:CDS | 60.0% | |
| AGGAACTTGCGGATCGAGCC+CGG | + | chr4_4:9174596-9174615 | None:intergenic | 60.0% | |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | - | chr4_4:9175363-9175382 | Msa0668260:CDS | 60.0% |
| GAAATTCCTGGCTCCGCCAC+TGG | - | chr4_4:9176311-9176330 | Msa0668260:CDS | 60.0% | |
| GGAACTTGCGGATCGAGCCC+GGG | + | chr4_4:9174595-9174614 | None:intergenic | 65.0% | |
| GGAACTTGCGGATCGAGCCC+GGG | + | chr4_4:9174595-9174614 | None:intergenic | 65.0% | |
| ! | GCAGTGGCGGAGACAGCGCC+CGG | - | chr4_4:9174553-9174572 | Msa0668260:intron | 75.0% |
| ! | GCAGTGGCGGAGACAGCGCC+CGG | - | chr4_4:9174553-9174572 | Msa0668260:intron | 75.0% |
| ! | GAGACAGCGCCCGGCGACCC+CGG | - | chr4_4:9174562-9174581 | Msa0668260:intron | 80.0% |
| ! | AGACAGCGCCCGGCGACCCC+GGG | - | chr4_4:9174563-9174582 | Msa0668260:intron | 80.0% |
| ! | ATCGAGCCCGGGCGACCGCC+CGG | + | chr4_4:9174584-9174603 | None:intergenic | 80.0% |
| ! | GAGACAGCGCCCGGCGACCC+CGG | - | chr4_4:9174562-9174581 | Msa0668260:intron | 80.0% |
| ! | AGACAGCGCCCGGCGACCCC+GGG | - | chr4_4:9174563-9174582 | Msa0668260:intron | 80.0% |
| ! | ATCGAGCCCGGGCGACCGCC+CGG | + | chr4_4:9174584-9174603 | None:intergenic | 80.0% |
| ! | TCGAGCCCGGGCGACCGCCC+GGG | + | chr4_4:9174583-9174602 | None:intergenic | 85.0% |
| ! | TCGAGCCCGGGCGACCGCCC+GGG | + | chr4_4:9174583-9174602 | None:intergenic | 85.0% |
| ! | CAGCGCCCGGCGACCCCGGG+CGG | - | chr4_4:9174566-9174585 | Msa0668260:intron | 90.0% |
| ! | GGCGACCGCCCGGGGTCGCC+GGG | + | chr4_4:9174574-9174593 | None:intergenic | 90.0% |
| ! | GGGCGACCGCCCGGGGTCGC+CGG | + | chr4_4:9174575-9174594 | None:intergenic | 90.0% |
| ! | GGCGACCCCGGGCGGTCGCC+CGG | - | chr4_4:9174574-9174593 | Msa0668260:intron | 90.0% |
| ! | GCGACCCCGGGCGGTCGCCC+GGG | - | chr4_4:9174575-9174594 | Msa0668260:intron | 90.0% |
| ! | CGAGCCCGGGCGACCGCCCG+GGG | + | chr4_4:9174582-9174601 | None:intergenic | 90.0% |
| ! | CAGCGCCCGGCGACCCCGGG+CGG | - | chr4_4:9174566-9174585 | Msa0668260:intron | 90.0% |
| ! | GGCGACCGCCCGGGGTCGCC+GGG | + | chr4_4:9174574-9174593 | None:intergenic | 90.0% |
| ! | GGGCGACCGCCCGGGGTCGC+CGG | + | chr4_4:9174575-9174594 | None:intergenic | 90.0% |
| ! | GGCGACCCCGGGCGGTCGCC+CGG | - | chr4_4:9174574-9174593 | Msa0668260:intron | 90.0% |
| ! | GCGACCCCGGGCGGTCGCCC+GGG | - | chr4_4:9174575-9174594 | Msa0668260:intron | 90.0% |
| ! | CGAGCCCGGGCGACCGCCCG+GGG | + | chr4_4:9174582-9174601 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 9174480 | 9176337 | 9174480 | ID=Msa0668260;Name=Msa0668260 |
| chr4_4 | mRNA | 9174480 | 9176337 | 9174480 | ID=Msa0668260-mRNA-1;Parent=Msa0668260;Name=Msa0668260-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.25|0|0.4|1|1|5|0|277 |
| chr4_4 | exon | 9176208 | 9176337 | 9176208 | ID=Msa0668260-mRNA-1:exon:2922;Parent=Msa0668260-mRNA-1 |
| chr4_4 | exon | 9175933 | 9176120 | 9175933 | ID=Msa0668260-mRNA-1:exon:2921;Parent=Msa0668260-mRNA-1 |
| chr4_4 | exon | 9175304 | 9175516 | 9175304 | ID=Msa0668260-mRNA-1:exon:2920;Parent=Msa0668260-mRNA-1 |
| chr4_4 | exon | 9174607 | 9174875 | 9174607 | ID=Msa0668260-mRNA-1:exon:2919;Parent=Msa0668260-mRNA-1 |
| chr4_4 | exon | 9174480 | 9174513 | 9174480 | ID=Msa0668260-mRNA-1:exon:2918;Parent=Msa0668260-mRNA-1 |
| chr4_4 | CDS | 9176208 | 9176337 | 9176208 | ID=Msa0668260-mRNA-1:cds;Parent=Msa0668260-mRNA-1 |
| chr4_4 | CDS | 9175933 | 9176120 | 9175933 | ID=Msa0668260-mRNA-1:cds;Parent=Msa0668260-mRNA-1 |
| chr4_4 | CDS | 9175304 | 9175516 | 9175304 | ID=Msa0668260-mRNA-1:cds;Parent=Msa0668260-mRNA-1 |
| chr4_4 | CDS | 9174607 | 9174875 | 9174607 | ID=Msa0668260-mRNA-1:cds;Parent=Msa0668260-mRNA-1 |
| chr4_4 | CDS | 9174480 | 9174513 | 9174480 | ID=Msa0668260-mRNA-1:cds;Parent=Msa0668260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
