Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589780 | XP_003594552.1 | 96.970 | 132 | 4 | 0 | 37 | 168 | 71 | 202 | 2.62e-85 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589780 | sp|Q9SD20|MS5L2_ARATH | 62.687 | 134 | 50 | 0 | 35 | 168 | 48 | 181 | 8.00e-54 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0589780 | 0.817093 | 3.943894e-52 | -8.615850e-47 |
| Msa0016580 | Msa0589780 | 0.836519 | 8.921669e-57 | -8.615850e-47 |
| Msa0110270 | Msa0589780 | 0.816464 | 5.456713e-52 | -8.615850e-47 |
| Msa0111510 | Msa0589780 | 0.800090 | 1.696375e-48 | -8.615850e-47 |
| Msa0142220 | Msa0589780 | 0.839589 | 1.448022e-57 | -8.615850e-47 |
| Msa0153910 | Msa0589780 | 0.810388 | 1.181831e-50 | -8.615850e-47 |
| Msa0235140 | Msa0589780 | 0.810748 | 9.877628e-51 | -8.615850e-47 |
| Msa0402290 | Msa0589780 | 0.804502 | 2.095048e-49 | -8.615850e-47 |
| Msa0407750 | Msa0589780 | 0.803464 | 3.443007e-49 | -8.615850e-47 |
| Msa0414420 | Msa0589780 | 0.801164 | 1.024669e-48 | -8.615850e-47 |
| Msa0436800 | Msa0589780 | 0.817798 | 2.735179e-52 | -8.615850e-47 |
| Msa0452900 | Msa0589780 | 0.803338 | 3.655561e-49 | -8.615850e-47 |
| Msa0453120 | Msa0589780 | 0.804917 | 1.715737e-49 | -8.615850e-47 |
| Msa0270520 | Msa0589780 | 0.802247 | 6.142759e-49 | -8.615850e-47 |
| Msa0360510 | Msa0589780 | 0.805876 | 1.079983e-49 | -8.615850e-47 |
| Msa0502270 | Msa0589780 | 0.800061 | 1.719719e-48 | -8.615850e-47 |
| Msa0537500 | Msa0589780 | 0.800863 | 1.180603e-48 | -8.615850e-47 |
| Msa0564890 | Msa0589780 | 0.826205 | 3.082497e-54 | -8.615850e-47 |
| Msa0589780 | Msa0668260 | 0.974342 | 5.481754e-138 | -8.615850e-47 |
| Msa0589780 | Msa0678930 | 0.821748 | 3.423944e-53 | -8.615850e-47 |
| Msa0589780 | Msa0686270 | 0.800537 | 1.375701e-48 | -8.615850e-47 |
| Msa0589780 | Msa0726140 | 0.813745 | 2.190455e-51 | -8.615850e-47 |
| Msa0589780 | Msa0733290 | 0.816790 | 4.610743e-52 | -8.615850e-47 |
| Msa0589780 | Msa0741990 | 0.816898 | 4.361395e-52 | -8.615850e-47 |
| Msa0589780 | Msa0743810 | 0.821568 | 3.767153e-53 | -8.615850e-47 |
| Msa0589780 | Msa0745060 | 0.800438 | 1.441077e-48 | -8.615850e-47 |
| Msa0589780 | Msa0766630 | 0.830340 | 3.104090e-55 | -8.615850e-47 |
| Msa0589780 | Msa0783160 | 0.800356 | 1.497589e-48 | -8.615850e-47 |
| Msa0589780 | Msa0811080 | 0.819617 | 1.057235e-52 | -8.615850e-47 |
| Msa0589780 | Msa0846350 | 0.823707 | 1.198434e-53 | -8.615850e-47 |
| Msa0589780 | Msa0885290 | 0.812404 | 4.311705e-51 | -8.615850e-47 |
| Msa0589780 | Msa0887990 | 0.804837 | 1.783119e-49 | -8.615850e-47 |
| Msa0589780 | Msa0907260 | 0.802251 | 6.130761e-49 | -8.615850e-47 |
| Msa0589780 | Msa0956270 | 0.809264 | 2.062039e-50 | -8.615850e-47 |
| Msa0589780 | Msa0981370 | 0.816578 | 5.143798e-52 | -8.615850e-47 |
| Msa0589780 | Msa1025360 | 0.802345 | 5.864010e-49 | -8.615850e-47 |
| Msa0589780 | Msa1044840 | 0.803179 | 3.943385e-49 | -8.615850e-47 |
| Msa0589780 | Msa1096580 | 0.810424 | 1.160760e-50 | -8.615850e-47 |
| Msa0589780 | Msa1100980 | 0.804066 | 2.582297e-49 | -8.615850e-47 |
| Msa0589780 | Msa1120970 | 0.822273 | 2.587047e-53 | -8.615850e-47 |
| Msa0589780 | Msa1146110 | 0.812430 | 4.256826e-51 | -8.615850e-47 |
| Msa0589780 | Msa1160670 | 0.827604 | 1.427548e-54 | -8.615850e-47 |
| Msa0589780 | Msa1179770 | 0.814065 | 1.862511e-51 | -8.615850e-47 |
| Msa0589780 | Msa1187940 | 0.802115 | 6.537018e-49 | -8.615850e-47 |
| Msa0589780 | Msa1187950 | 0.826421 | 2.737569e-54 | -8.615850e-47 |
| Msa0589780 | Msa1192640 | 0.811936 | 5.454384e-51 | -8.615850e-47 |
| Msa0589780 | Msa1253000 | 0.811202 | 7.878468e-51 | -8.615850e-47 |
| Msa0589780 | Msa1283330 | 0.807954 | 3.926482e-50 | -8.615850e-47 |
| Msa0589780 | Msa1284680 | 0.801082 | 1.064810e-48 | -8.615850e-47 |
| Msa0589780 | Msa1285930 | 0.831798 | 1.360907e-55 | -8.615850e-47 |
| Msa0589780 | Msa1287800 | 0.804022 | 2.637098e-49 | -8.615850e-47 |
| Msa0589780 | Msa1287810 | 0.807987 | 3.864938e-50 | -8.615850e-47 |
| Msa0589780 | Msa1397860 | 0.801501 | 8.740729e-49 | -8.615850e-47 |
| Msa0589780 | Msa1422180 | 0.808744 | 2.664802e-50 | -8.615850e-47 |
| Msa0589780 | Msa1433120 | 0.817234 | 3.664733e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589780 | MtrunA17_Chr2g0292681 | 96.970 | 132 | 4 | 0 | 37 | 168 | 71 | 202 | 2.41e-89 | 272 |
| Msa0589780 | MtrunA17_Chr7g0237581 | 64.394 | 132 | 47 | 0 | 37 | 168 | 44 | 175 | 7.24e-57 | 180 |
| Msa0589780 | MtrunA17_Chr8g0371521 | 63.433 | 134 | 49 | 0 | 35 | 168 | 54 | 187 | 8.69e-56 | 182 |
| Msa0589780 | MtrunA17_Chr7g0237621 | 63.636 | 132 | 48 | 0 | 37 | 168 | 56 | 187 | 9.43e-56 | 177 |
| Msa0589780 | MtrunA17_Chr2g0292671 | 92.771 | 83 | 6 | 0 | 86 | 168 | 2 | 84 | 1.68e-52 | 166 |
| Msa0589780 | MtrunA17_Chr3g0077351 | 100.000 | 37 | 0 | 0 | 1 | 37 | 46 | 82 | 6.05e-18 | 79.3 |
| Msa0589780 | MtrunA17_Chr2g0292661 | 88.889 | 36 | 4 | 0 | 37 | 72 | 68 | 103 | 2.70e-15 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589780 | AT3G51280.1 | 62.687 | 134 | 50 | 0 | 35 | 168 | 48 | 181 | 8.14e-55 | 179 |
| Msa0589780 | AT4G20900.2 | 62.121 | 132 | 50 | 0 | 37 | 168 | 71 | 202 | 2.00e-54 | 177 |
| Msa0589780 | AT4G20900.1 | 62.121 | 132 | 50 | 0 | 37 | 168 | 71 | 202 | 3.08e-54 | 177 |
| Msa0589780 | AT5G48850.1 | 59.091 | 132 | 54 | 0 | 37 | 168 | 47 | 178 | 6.76e-54 | 173 |
| Msa0589780 | AT1G04770.1 | 58.333 | 132 | 55 | 0 | 37 | 168 | 40 | 171 | 1.53e-50 | 164 |
| Msa0589780 | AT5G44330.1 | 59.091 | 132 | 54 | 0 | 37 | 168 | 64 | 195 | 5.04e-48 | 162 |
| Msa0589780 | AT5G22794.2 | 38.889 | 72 | 44 | 0 | 89 | 160 | 66 | 137 | 2.42e-11 | 60.5 |
Find 39 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGACTGGAACAGAATC+AGG | 0.358714 | 4_2:+13046124 | None:intergenic |
| CATCTTGGTTGAACTCTATA+CGG | 0.371370 | 4_2:-13045490 | Msa0589780:intron |
| CGAGAGTGCCTTGAAGGATA+TGG | 0.372126 | 4_2:-13045613 | Msa0589780:CDS |
| TTCTGGGCTGCCATCAATGC+TGG | 0.391601 | 4_2:-13045645 | Msa0589780:CDS |
| GACGCGATCACCAGCATTGA+TGG | 0.392146 | 4_2:+13045635 | None:intergenic |
| GGTTCTATGTCTAGAAGAAT+TGG | 0.399284 | 4_2:-13046175 | Msa0589780:CDS |
| CATTGATGGCAGCCCAGAAA+AGG | 0.416287 | 4_2:+13045649 | None:intergenic |
| TCGCGTCGAGAGTGCCTTGA+AGG | 0.421679 | 4_2:-13045619 | Msa0589780:CDS |
| AACTAAAGCCATATCCTTCA+AGG | 0.422487 | 4_2:+13045605 | None:intergenic |
| CAGTTAGTGGATAAAGATCC+AGG | 0.435700 | 4_2:-13045684 | Msa0589780:CDS |
| GGATACTCGGGAACTTGGCT+TGG | 0.447870 | 4_2:-13044892 | Msa0589780:CDS |
| GGAATCTCTTGACAACATCT+TGG | 0.450411 | 4_2:-13045505 | Msa0589780:CDS |
| CAAGAGATATCAAGGATACT+CGG | 0.452807 | 4_2:-13044905 | Msa0589780:CDS |
| TTGTTACTGTTATAGAGGTC+AGG | 0.460441 | 4_2:-13045055 | Msa0589780:intron |
| TTCTGTTCCAGTCAACAAAC+AGG | 0.461427 | 4_2:-13046119 | Msa0589780:intron |
| TCTCTGCCCTTCTGATTCTC+AGG | 0.462514 | 4_2:-13045526 | Msa0589780:CDS |
| TAGTTATGAAGCAACTGAAC+CGG | 0.474084 | 4_2:-13045587 | Msa0589780:CDS |
| AAAAGGGAAATTGCTTTACC+TGG | 0.474611 | 4_2:+13045666 | None:intergenic |
| GATACTCGGGAACTTGGCTT+GGG | 0.475595 | 4_2:-13044891 | Msa0589780:CDS |
| ATCAAGGATACTCGGGAACT+TGG | 0.479935 | 4_2:-13044897 | Msa0589780:CDS |
| AGCAGAACCTGTTTGTTGAC+TGG | 0.503298 | 4_2:+13046112 | None:intergenic |
| GGAAGGGTTGATGAAGAGAT+TGG | 0.505590 | 4_2:-13045034 | Msa0589780:CDS |
| GTGCTGAACAAGAGATATCA+AGG | 0.512190 | 4_2:-13044913 | Msa0589780:CDS |
| ATTGATGGCAGCCCAGAAAA+GGG | 0.512233 | 4_2:+13045650 | None:intergenic |
| GAAGATGGTATGACATATGT+TGG | 0.513644 | 4_2:-13044983 | Msa0589780:CDS |
| GAGAATCAGAAGGGCAGAGA+TGG | 0.537437 | 4_2:+13045529 | None:intergenic |
| ACAAAACATGCAAGATCTCA+AGG | 0.546544 | 4_2:-13044953 | Msa0589780:CDS |
| ATTCGATTGCTTCATCCGAC+CGG | 0.551071 | 4_2:+13045568 | None:intergenic |
| CAACATTCTCAGAGGTTCGA+AGG | 0.558149 | 4_2:-13046196 | Msa0589780:CDS |
| TACTGTTATAGAGGTCAGGA+AGG | 0.560755 | 4_2:-13045051 | Msa0589780:intron |
| AAGAGATATCAAGGATACTC+GGG | 0.578149 | 4_2:-13044904 | Msa0589780:CDS |
| AAGTTGAAGCAAATTGAAGA+TGG | 0.583679 | 4_2:-13044998 | Msa0589780:CDS |
| AGAGATTCCTGAGAATCAGA+AGG | 0.602703 | 4_2:+13045519 | None:intergenic |
| ATGGTATGACATATGTTGGA+AGG | 0.607080 | 4_2:-13044979 | Msa0589780:CDS |
| GAGATTCCTGAGAATCAGAA+GGG | 0.645235 | 4_2:+13045520 | None:intergenic |
| CAAAACATGCAAGATCTCAA+GGG | 0.648943 | 4_2:-13044952 | Msa0589780:CDS |
| CACTTCAACAACATTCTCAG+AGG | 0.654400 | 4_2:-13046204 | Msa0589780:CDS |
| ACTGTTATAGAGGTCAGGAA+GGG | 0.657103 | 4_2:-13045050 | Msa0589780:intron |
| TATGAAGCAACTGAACCGGT+CGG | 0.679096 | 4_2:-13045583 | Msa0589780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr4_2:13045005-13045024 | Msa0589780:CDS | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr4_2:13045006-13045025 | Msa0589780:CDS | 10.0% |
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr4_2:13045005-13045024 | Msa0589780:CDS | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr4_2:13045006-13045025 | Msa0589780:CDS | 10.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | - | chr4_2:13045333-13045352 | Msa0589780:intron | 20.0% |
| !!! | TTTTTGAAGTAATCTTTATC+AGG | - | chr4_2:13045333-13045352 | Msa0589780:intron | 20.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr4_2:13045227-13045246 | Msa0589780:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr4_2:13045228-13045247 | Msa0589780:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | - | chr4_2:13045349-13045368 | Msa0589780:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | + | chr4_2:13045729-13045748 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | - | chr4_2:13045752-13045771 | Msa0589780:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | + | chr4_2:13045799-13045818 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | - | chr4_2:13045797-13045816 | Msa0589780:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | - | chr4_2:13045813-13045832 | Msa0589780:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | - | chr4_2:13045968-13045987 | Msa0589780:intron | 25.0% |
| ! | GTATATTGTTACTGTTATAG+AGG | - | chr4_2:13046031-13046050 | Msa0589780:intron | 25.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr4_2:13045227-13045246 | Msa0589780:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr4_2:13045228-13045247 | Msa0589780:intron | 25.0% |
| !! | TATCAGGTAATTTTCTTTCT+TGG | - | chr4_2:13045349-13045368 | Msa0589780:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | + | chr4_2:13045729-13045748 | None:intergenic | 25.0% |
| ! | ATCTGAATACACTTACAAAA+AGG | - | chr4_2:13045752-13045771 | Msa0589780:intron | 25.0% |
| ! | CTAAATGTTACAAATCAACA+AGG | + | chr4_2:13045799-13045818 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTAACATTT+AGG | - | chr4_2:13045797-13045816 | Msa0589780:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | - | chr4_2:13045813-13045832 | Msa0589780:intron | 25.0% |
| ! | GTTTAGTATTTGATTGTTGA+AGG | - | chr4_2:13045968-13045987 | Msa0589780:intron | 25.0% |
| ! | GTATATTGTTACTGTTATAG+AGG | - | chr4_2:13046031-13046050 | Msa0589780:intron | 25.0% |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr4_2:13045077-13045096 | Msa0589780:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr4_2:13045078-13045097 | Msa0589780:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr4_2:13045077-13045096 | Msa0589780:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr4_2:13045078-13045097 | Msa0589780:intron | 30.0% | |
| AATTCATGAGATGTAAGAGA+AGG | - | chr4_2:13045290-13045309 | Msa0589780:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | - | chr4_2:13045394-13045413 | Msa0589780:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | - | chr4_2:13045430-13045449 | Msa0589780:intron | 30.0% |
| TTGAACTCTATACGGTATAA+GGG | - | chr4_2:13045609-13045628 | Msa0589780:CDS | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | + | chr4_2:13045655-13045674 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | - | chr4_2:13045755-13045774 | Msa0589780:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | - | chr4_2:13045756-13045775 | Msa0589780:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | - | chr4_2:13045911-13045930 | Msa0589780:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | - | chr4_2:13045981-13046000 | Msa0589780:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | - | chr4_2:13046093-13046112 | Msa0589780:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr4_2:13045077-13045096 | Msa0589780:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr4_2:13045078-13045097 | Msa0589780:intron | 30.0% | |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr4_2:13045077-13045096 | Msa0589780:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr4_2:13045078-13045097 | Msa0589780:intron | 30.0% | |
| AATTCATGAGATGTAAGAGA+AGG | - | chr4_2:13045290-13045309 | Msa0589780:intron | 30.0% | |
| TCTGAATTCTTTACAGTTAG+TGG | - | chr4_2:13045394-13045413 | Msa0589780:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | - | chr4_2:13045430-13045449 | Msa0589780:intron | 30.0% |
| TTGAACTCTATACGGTATAA+GGG | - | chr4_2:13045609-13045628 | Msa0589780:CDS | 30.0% | |
| GAAAATTGACAAACTATGAC+AGG | + | chr4_2:13045655-13045674 | None:intergenic | 30.0% | |
| TGAATACACTTACAAAAAGG+TGG | - | chr4_2:13045755-13045774 | Msa0589780:intron | 30.0% | |
| GAATACACTTACAAAAAGGT+GGG | - | chr4_2:13045756-13045775 | Msa0589780:intron | 30.0% | |
| AGATGAAAGACTTTCATACA+TGG | - | chr4_2:13045911-13045930 | Msa0589780:intron | 30.0% | |
| TTGTTGAAGGTTATAAAACC+AGG | - | chr4_2:13045981-13046000 | Msa0589780:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | - | chr4_2:13046093-13046112 | Msa0589780:intron | 30.0% | |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr4_2:13044916-13044935 | Msa0589780:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr4_2:13045022-13045041 | Msa0589780:CDS | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | + | chr4_2:13045428-13045447 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | - | chr4_2:13045429-13045448 | Msa0589780:intron | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | + | chr4_2:13045489-13045508 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | - | chr4_2:13045504-13045523 | Msa0589780:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | - | chr4_2:13045601-13045620 | Msa0589780:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | - | chr4_2:13045608-13045627 | Msa0589780:CDS | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | - | chr4_2:13045679-13045698 | Msa0589780:CDS | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | - | chr4_2:13045763-13045782 | Msa0589780:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | - | chr4_2:13045928-13045947 | Msa0589780:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | + | chr4_2:13046002-13046021 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | - | chr4_2:13045999-13046018 | Msa0589780:intron | 35.0% |
| TTGTTACTGTTATAGAGGTC+AGG | - | chr4_2:13046036-13046055 | Msa0589780:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | - | chr4_2:13046108-13046127 | Msa0589780:intron | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | - | chr4_2:13046112-13046131 | Msa0589780:intron | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | - | chr4_2:13046138-13046157 | Msa0589780:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | - | chr4_2:13046139-13046158 | Msa0589780:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | - | chr4_2:13046186-13046205 | Msa0589780:CDS | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | - | chr4_2:13046187-13046206 | Msa0589780:CDS | 35.0% | |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr4_2:13044916-13044935 | Msa0589780:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr4_2:13045022-13045041 | Msa0589780:CDS | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | + | chr4_2:13045428-13045447 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | - | chr4_2:13045429-13045448 | Msa0589780:intron | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | + | chr4_2:13045489-13045508 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | - | chr4_2:13045504-13045523 | Msa0589780:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+CGG | - | chr4_2:13045601-13045620 | Msa0589780:CDS | 35.0% | |
| GTTGAACTCTATACGGTATA+AGG | - | chr4_2:13045608-13045627 | Msa0589780:CDS | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | - | chr4_2:13045679-13045698 | Msa0589780:CDS | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | - | chr4_2:13045763-13045782 | Msa0589780:intron | 35.0% | |
| ! | ACATGGCTATCAAGTATTGT+AGG | - | chr4_2:13045928-13045947 | Msa0589780:intron | 35.0% |
| CCACTAAAATGTTAAACACC+TGG | + | chr4_2:13046002-13046021 | None:intergenic | 35.0% | |
| ! | CCAGGTGTTTAACATTTTAG+TGG | - | chr4_2:13045999-13046018 | Msa0589780:intron | 35.0% |
| TTGTTACTGTTATAGAGGTC+AGG | - | chr4_2:13046036-13046055 | Msa0589780:intron | 35.0% | |
| GAAGATGGTATGACATATGT+TGG | - | chr4_2:13046108-13046127 | Msa0589780:intron | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | - | chr4_2:13046112-13046131 | Msa0589780:intron | 35.0% | |
| ACAAAACATGCAAGATCTCA+AGG | - | chr4_2:13046138-13046157 | Msa0589780:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | - | chr4_2:13046139-13046158 | Msa0589780:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+CGG | - | chr4_2:13046186-13046205 | Msa0589780:CDS | 35.0% | |
| AAGAGATATCAAGGATACTC+GGG | - | chr4_2:13046187-13046206 | Msa0589780:CDS | 35.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr4_2:13044887-13044906 | Msa0589780:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr4_2:13044970-13044989 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr4_2:13044972-13044991 | Msa0589780:CDS | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | - | chr4_2:13045407-13045426 | Msa0589780:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | + | chr4_2:13045574-13045593 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | + | chr4_2:13045575-13045594 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | - | chr4_2:13045586-13045605 | Msa0589780:CDS | 40.0% | |
| TACTGTTATAGAGGTCAGGA+AGG | - | chr4_2:13046040-13046059 | Msa0589780:intron | 40.0% | |
| ACTGTTATAGAGGTCAGGAA+GGG | - | chr4_2:13046041-13046060 | Msa0589780:intron | 40.0% | |
| GTGCTGAACAAGAGATATCA+AGG | - | chr4_2:13046178-13046197 | Msa0589780:CDS | 40.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr4_2:13044887-13044906 | Msa0589780:CDS | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr4_2:13044970-13044989 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr4_2:13044972-13044991 | Msa0589780:CDS | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | - | chr4_2:13045407-13045426 | Msa0589780:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | + | chr4_2:13045574-13045593 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | + | chr4_2:13045575-13045594 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | - | chr4_2:13045586-13045605 | Msa0589780:CDS | 40.0% | |
| TACTGTTATAGAGGTCAGGA+AGG | - | chr4_2:13046040-13046059 | Msa0589780:intron | 40.0% | |
| ACTGTTATAGAGGTCAGGAA+GGG | - | chr4_2:13046041-13046060 | Msa0589780:intron | 40.0% | |
| GTGCTGAACAAGAGATATCA+AGG | - | chr4_2:13046178-13046197 | Msa0589780:CDS | 40.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr4_2:13044895-13044914 | Msa0589780:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr4_2:13044982-13045001 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr4_2:13045086-13045105 | Msa0589780:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr4_2:13045093-13045112 | Msa0589780:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr4_2:13045086-13045105 | Msa0589780:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr4_2:13045093-13045112 | Msa0589780:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | + | chr4_2:13045444-13045463 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | - | chr4_2:13045508-13045527 | Msa0589780:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | + | chr4_2:13045526-13045545 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | - | chr4_2:13046057-13046076 | Msa0589780:intron | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | - | chr4_2:13046194-13046213 | Msa0589780:CDS | 45.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr4_2:13044895-13044914 | Msa0589780:CDS | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr4_2:13044982-13045001 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr4_2:13045086-13045105 | Msa0589780:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr4_2:13045093-13045112 | Msa0589780:intron | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr4_2:13045086-13045105 | Msa0589780:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr4_2:13045093-13045112 | Msa0589780:intron | 45.0% |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | + | chr4_2:13045444-13045463 | None:intergenic | 45.0% |
| TATGAAGCAACTGAACCGGT+CGG | - | chr4_2:13045508-13045527 | Msa0589780:CDS | 45.0% | |
| ATTCGATTGCTTCATCCGAC+CGG | + | chr4_2:13045526-13045545 | None:intergenic | 45.0% | |
| !! | GGAAGGGTTGATGAAGAGAT+TGG | - | chr4_2:13046057-13046076 | Msa0589780:intron | 45.0% |
| ATCAAGGATACTCGGGAACT+TGG | - | chr4_2:13046194-13046213 | Msa0589780:CDS | 45.0% | |
| ! | CATTGATGGCAGCCCAGAAA+AGG | + | chr4_2:13045445-13045464 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | - | chr4_2:13045478-13045497 | Msa0589780:intron | 50.0% |
| GAGAATCAGAAGGGCAGAGA+TGG | + | chr4_2:13045565-13045584 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | - | chr4_2:13045565-13045584 | Msa0589780:CDS | 50.0% | |
| GATACTCGGGAACTTGGCTT+GGG | - | chr4_2:13046200-13046219 | Msa0589780:CDS | 50.0% | |
| ! | CATTGATGGCAGCCCAGAAA+AGG | + | chr4_2:13045445-13045464 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | - | chr4_2:13045478-13045497 | Msa0589780:intron | 50.0% |
| GAGAATCAGAAGGGCAGAGA+TGG | + | chr4_2:13045565-13045584 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | - | chr4_2:13045565-13045584 | Msa0589780:CDS | 50.0% | |
| GATACTCGGGAACTTGGCTT+GGG | - | chr4_2:13046200-13046219 | Msa0589780:CDS | 50.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | - | chr4_2:13045446-13045465 | Msa0589780:intron | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | + | chr4_2:13045459-13045478 | None:intergenic | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | - | chr4_2:13046199-13046218 | Msa0589780:CDS | 55.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | - | chr4_2:13045446-13045465 | Msa0589780:intron | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | + | chr4_2:13045459-13045478 | None:intergenic | 55.0% |
| GGATACTCGGGAACTTGGCT+TGG | - | chr4_2:13046199-13046218 | Msa0589780:CDS | 55.0% | |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | - | chr4_2:13045472-13045491 | Msa0589780:intron | 60.0% |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | - | chr4_2:13045472-13045491 | Msa0589780:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 13044883 | 13046230 | 13044883 | ID=Msa0589780;Name=Msa0589780 |
| chr4_2 | mRNA | 13044883 | 13046230 | 13044883 | ID=Msa0589780-mRNA-1;Parent=Msa0589780;Name=Msa0589780-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.5|0.33|0.66|1|1|3|0|168 |
| chr4_2 | exon | 13044883 | 13045062 | 13044883 | ID=Msa0589780-mRNA-1:exon:3818;Parent=Msa0589780-mRNA-1 |
| chr4_2 | exon | 13045491 | 13045703 | 13045491 | ID=Msa0589780-mRNA-1:exon:3817;Parent=Msa0589780-mRNA-1 |
| chr4_2 | exon | 13046120 | 13046230 | 13046120 | ID=Msa0589780-mRNA-1:exon:3816;Parent=Msa0589780-mRNA-1 |
| chr4_2 | CDS | 13046120 | 13046230 | 13046120 | ID=Msa0589780-mRNA-1:cds;Parent=Msa0589780-mRNA-1 |
| chr4_2 | CDS | 13045491 | 13045703 | 13045491 | ID=Msa0589780-mRNA-1:cds;Parent=Msa0589780-mRNA-1 |
| chr4_2 | CDS | 13044883 | 13045062 | 13044883 | ID=Msa0589780-mRNA-1:cds;Parent=Msa0589780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
