AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121090 MtrunA17_Chr7g0250291 99.248 266 2 0 1 266 1 266 0.0 546
Msa1121090 MtrunA17_Chr8g0335681 79.699 266 50 2 1 266 1 262 3.66e-154 430
Msa1121090 MtrunA17_Chr4g0022101 60.684 234 89 2 32 264 1 232 1.22e-101 296
Msa1121090 MtrunA17_Chr3g0122601 59.504 242 97 1 25 265 20 261 1.42e-99 291
Msa1121090 MtrunA17_Chr7g0254541 54.430 237 107 1 29 264 81 317 1.12e-90 271
Msa1121090 MtrunA17_Chr0c29g0494021 100.000 91 0 0 176 266 1 91 2.04e-60 186
Msa1121090 MtrunA17_Chr0c29g0494041 98.305 59 1 0 1 59 1 59 1.35e-35 121
Msa1121090 MtrunA17_Chr0c29g0494031 100.000 38 0 0 90 127 5 42 1.67e-21 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121090 AT2G44770.1 81.955 266 48 0 1 266 1 266 3.01e-166 461
Msa1121090 AT3G60260.2 79.699 266 54 0 1 266 1 266 1.22e-164 457
Msa1121090 AT3G60260.4 79.699 266 54 0 1 266 1 266 1.22e-164 457
Msa1121090 AT3G60260.1 79.699 266 54 0 1 266 1 266 1.22e-164 457
Msa1121090 AT3G60260.3 78.151 238 52 0 29 266 7 244 1.08e-143 403
Msa1121090 AT1G67400.1 56.349 252 105 2 15 265 34 281 1.98e-103 302
Msa1121090 AT1G03620.8 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.10 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.9 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.1 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.7 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.4 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.5 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.11 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.13 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1121090 AT1G03620.3 58.974 234 92 3 32 264 1 231 6.62e-99 289
Msa1121090 AT1G03620.6 58.974 234 92 3 32 264 1 231 6.62e-99 289
Msa1121090 AT1G03620.2 58.974 234 92 3 32 264 1 231 6.62e-99 289
Msa1121090 AT1G03620.12 58.403 238 95 3 28 264 61 295 1.34e-98 291
Msa1121090 AT3G03610.1 56.485 239 103 1 29 266 85 323 3.34e-93 278
Msa1121090 AT3G03610.3 56.485 239 103 1 29 266 85 323 3.34e-93 278
Msa1121090 AT3G03610.2 56.485 239 103 1 29 266 85 323 3.34e-93 278
Msa1121090 AT3G03610.4 56.485 239 103 1 29 266 97 335 3.38e-93 278
Msa1121090 AT3G43400.1 60.993 141 51 1 97 237 71 207 5.89e-59 187

Find 119 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAATCTAATAGGGTTTA+TGG 0.199304 7_3:-71112379 None:intergenic
AGGAATCCTTAAGGGCTTTA+TGG 0.211377 7_3:+71114395 Msa1121090:intron
GAGAAAAGAAAGAATCTAAT+AGG 0.219964 7_3:-71112387 None:intergenic
ATTCCGTTAATGTCCATTAA+TGG 0.228820 7_3:+71117214 Msa1121090:three_prime_UTR
CTTTCTCTCTCTTTCTTTCC+CGG 0.240840 7_3:+71112424 Msa1121090:five_prime_UTR
AGAGAGAAAGAGAAAGAAAA+TGG 0.250249 7_3:-71112411 None:intergenic
TATACTCGCTTCCTATCTTT+TGG 0.284154 7_3:+71117400 Msa1121090:three_prime_UTR
ACAGAACAAGATCGTAAAAT+TGG 0.286763 7_3:-71117431 None:intergenic
TTCGTTTACTGCATATTTGT+TGG 0.305949 7_3:+71117302 Msa1121090:three_prime_UTR
CAAGACGAAGAATTCGAAAA+TGG 0.331833 7_3:+71112675 Msa1121090:exon
TTCCGTTAATGTCCATTAAT+GGG 0.332196 7_3:+71117215 Msa1121090:three_prime_UTR
GAGTACCCATTTGCGGTTGC+TGG 0.375334 7_3:+71115660 Msa1121090:CDS
CTTGTTCTGTTCTATTCAAC+AGG 0.384182 7_3:+71117444 Msa1121090:three_prime_UTR
CCTGTTGGAGGATGTATTGC+TGG 0.385839 7_3:+71117102 Msa1121090:three_prime_UTR
AGATCATACCGGAAAATTCC+TGG 0.390564 7_3:-71114641 None:intergenic
GATTATTCATTCTGCCGTTA+AGG 0.394207 7_3:-71112293 None:intergenic
GGATTGCAGTATCATAATTC+AGG 0.399167 7_3:+71117245 Msa1121090:three_prime_UTR
ATCTACCTAAAATCTGTTGA+TGG 0.403619 7_3:-71114496 None:intergenic
AGCATTCCATAAAGCCCTTA+AGG 0.404955 7_3:-71114401 None:intergenic
CTAGTTGTGTAAGGTCTTCA+AGG 0.412328 7_3:-71116870 None:intergenic
ACTTTCTTAAAATTCCTTGC+AGG 0.415890 7_3:+71116207 Msa1121090:CDS
TCACCACCACGACCGCGAAC+TGG 0.416741 7_3:-71112590 None:intergenic
TGTCCATTAATGGGAAAATA+CGG 0.419631 7_3:+71117224 Msa1121090:three_prime_UTR
TTAACACCAGCAACCGCAAA+TGG 0.419764 7_3:-71115666 None:intergenic
AAACAAAGAAAACGCCTTAA+CGG 0.420135 7_3:+71112279 Msa1121090:five_prime_UTR
GAAGAGACTACCTGGTGCTC+AGG 0.420184 7_3:-71114183 None:intergenic
AAATGTAGGTTTGCTTTGCT+TGG 0.423318 7_3:+71117149 Msa1121090:three_prime_UTR
CCAACAAATATTACCTGGTA+TGG 0.428837 7_3:-71113764 None:intergenic
TGGACATTAACGGAATATAT+AGG 0.429400 7_3:-71117207 None:intergenic
GAAATCTACACGCCGTCAGC+TGG 0.434732 7_3:+71116834 Msa1121090:CDS
TCAGGCAGGTTTACGAAAGT+TGG 0.435274 7_3:+71117263 Msa1121090:three_prime_UTR
AGAAAAGAAAGAATCTAATA+GGG 0.436025 7_3:-71112386 None:intergenic
TTCCATGCACGCGTCATACA+TGG 0.440337 7_3:+71116642 Msa1121090:CDS
TGGCGACAATACCAAAAGAT+AGG 0.444654 7_3:-71117411 None:intergenic
TTGCTGGCTGACATACAGTC+AGG 0.450369 7_3:+71117118 Msa1121090:three_prime_UTR
GATGATCTTAGGAATCCTTA+AGG 0.450878 7_3:+71114386 Msa1121090:intron
AAGCCATTGAGTTCTTCTTC+AGG 0.450943 7_3:-71114430 None:intergenic
ATGATCTTAGGAATCCTTAA+GGG 0.451275 7_3:+71114387 Msa1121090:intron
CATATCATTGGCAGGGGTGG+TGG 0.452395 7_3:+71114586 Msa1121090:intron
TTCCCATTAATGGACATTAA+CGG 0.454212 7_3:-71117217 None:intergenic
TTTCTCTCTCTTTCTTTCCC+GGG 0.454228 7_3:+71112425 Msa1121090:five_prime_UTR
TCGTGTGAGAAGTTTGTATG+AGG 0.455180 7_3:-71116902 None:intergenic
GTGTGATATCATCAAGGGTC+TGG 0.458653 7_3:+71117058 Msa1121090:three_prime_UTR
AGGAAGAAACGGTTAGAAAG+TGG 0.463798 7_3:-71112484 None:intergenic
AGAAAGATCTGGAACAGGTT+GGG 0.475602 7_3:-71112460 None:intergenic
GTTACAGCTGAGTTTGTGAC+AGG 0.476804 7_3:+71113656 Msa1121090:intron
TAGAAAGTGGAAGAAAGATC+TGG 0.486762 7_3:-71112471 None:intergenic
GTACATCTTCTAGTTGTGTA+AGG 0.487362 7_3:-71116879 None:intergenic
AACGCGTACCATTCATCTTC+CGG 0.493195 7_3:+71112757 Msa1121090:CDS
GGGTGGTGGTTACATATCAT+TGG 0.494330 7_3:+71114600 Msa1121090:CDS
AGTTAAGATTTAAATCCTGT+TGG 0.496510 7_3:+71117087 Msa1121090:three_prime_UTR
TAAGATTTAAATCCTGTTGG+AGG 0.497097 7_3:+71117090 Msa1121090:three_prime_UTR
GTGGAAGAAAGATCTGGAAC+AGG 0.499036 7_3:-71112465 None:intergenic
TGCAGTATCATAATTCAGGC+AGG 0.504316 7_3:+71117249 Msa1121090:three_prime_UTR
TCAAGCTGATGGACAATCAA+TGG 0.510235 7_3:+71116617 Msa1121090:CDS
ATTGAATACCGGAAGATGAA+TGG 0.510688 7_3:-71112765 None:intergenic
ACAGGATCAACGGCATGGAT+TGG 0.515977 7_3:+71113674 Msa1121090:CDS
CCAGCAATACATCCTCCAAC+AGG 0.516020 7_3:-71117102 None:intergenic
AGATTAGATTGTAATGATTG+TGG 0.516218 7_3:+71117180 Msa1121090:three_prime_UTR
TTGCATAACATTCAAGCTGA+TGG 0.521212 7_3:+71116606 Msa1121090:CDS
ATCCATGTATGACGCGTGCA+TGG 0.526326 7_3:-71116644 None:intergenic
TAGTTCTATCCCTGAGCACC+AGG 0.531050 7_3:+71114173 Msa1121090:CDS
AGTAAACGAACAAGGGCAGC+AGG 0.533806 7_3:-71117289 None:intergenic
TTTCCTGAAGAAGAACTCAA+TGG 0.539229 7_3:+71114427 Msa1121090:CDS
TGTTAGTTAAATGTTGAAGT+GGG 0.539821 7_3:-71117009 None:intergenic
CAAATGCTAGATCTTGAAGC+AGG 0.539920 7_3:+71115708 Msa1121090:CDS
GACAGTTAAGCCACGGACAC+TGG 0.542936 7_3:+71116176 Msa1121090:intron
TGGAAAGACATGGGATGGCA+AGG 0.544151 7_3:+71114466 Msa1121090:CDS
TAACACCAGCAACCGCAAAT+GGG 0.546447 7_3:-71115665 None:intergenic
ATGTTAGTTAAATGTTGAAG+TGG 0.548053 7_3:-71117010 None:intergenic
GTCAGGGGAGTCTGAAATGT+AGG 0.554862 7_3:+71117135 Msa1121090:three_prime_UTR
AAGAAAGATCTGGAACAGGT+TGG 0.554968 7_3:-71112461 None:intergenic
AATTCGAAAATGGATGATAG+AGG 0.555587 7_3:+71112685 Msa1121090:exon
TCAACGGCATGGATTGGCCG+AGG 0.555638 7_3:+71113680 Msa1121090:CDS
ATGAATAAAGTAATAAAATG+TGG 0.559523 7_3:+71112195 None:intergenic
AGTGTGGGAGTACCCATTTG+CGG 0.560410 7_3:+71115653 Msa1121090:CDS
CCTTCAAGTTAAAACTAGAC+TGG 0.566016 7_3:-71116946 None:intergenic
AGACATGGGATGGCAAGGGA+AGG 0.566951 7_3:+71114471 Msa1121090:CDS
TGGTATACATGAAGGAGCGC+AGG 0.569758 7_3:+71112215 Msa1121090:five_prime_UTR
CACATACACAAGACAAACCT+CGG 0.571165 7_3:-71113697 None:intergenic
ATGGCTTGATTTCAGAGCAG+TGG 0.573093 7_3:+71114446 Msa1121090:CDS
AGCAGTGGAAAGACATGGGA+TGG 0.573630 7_3:+71114461 Msa1121090:CDS
ATAAAATGTGGTATACATGA+AGG 0.576158 7_3:+71112207 None:intergenic
AGCCATGTGTGATATCATCA+AGG 0.579526 7_3:+71117052 Msa1121090:three_prime_UTR
AACAATAAAAGCTACCTGCA+AGG 0.580109 7_3:-71116221 None:intergenic
AAGAGACTACCTGGTGCTCA+GGG 0.585963 7_3:-71114182 None:intergenic
TCAGGGATAGAACTATCATA+TGG 0.590812 7_3:-71114165 None:intergenic
TTTCCAGTTCGCGGTCGTGG+TGG 0.593806 7_3:+71112587 Msa1121090:five_prime_UTR
TGAGTTTGTGACAGGATCAA+CGG 0.595004 7_3:+71113664 Msa1121090:CDS
TTCAGGAAGAATGCTTGCAG+AGG 0.599345 7_3:+71114121 Msa1121090:intron
GGAAGGAGTTCGTTCAGTGT+GGG 0.599733 7_3:+71115638 Msa1121090:CDS
AAATGTTGAAGTGGGAAGTG+CGG 0.600690 7_3:-71117001 None:intergenic
TTCAGAGCAGTGGAAAGACA+TGG 0.604712 7_3:+71114456 Msa1121090:CDS
TGATATCATCAAGGGTCTGG+AGG 0.605312 7_3:+71117061 Msa1121090:three_prime_UTR
TTGTGACAGGATCAACGGCA+TGG 0.606238 7_3:+71113669 Msa1121090:CDS
AGGAAGGAGTTCGTTCAGTG+TGG 0.607173 7_3:+71115637 Msa1121090:CDS
AGTTAAGCCACGGACACTGG+TGG 0.607277 7_3:+71116179 Msa1121090:intron
TGCTGGCTGACATACAGTCA+GGG 0.616409 7_3:+71117119 Msa1121090:three_prime_UTR
GGAAAGACATGGGATGGCAA+GGG 0.617483 7_3:+71114467 Msa1121090:CDS
ATATCACACATGGCTCACCT+TGG 0.623252 7_3:-71117044 None:intergenic
CGTGTGAGAAGTTTGTATGA+GGG 0.626967 7_3:-71116901 None:intergenic
GAAGTTCTTTCTCCAGCTGA+CGG 0.629691 7_3:-71116846 None:intergenic
TATGCAATAGAGAAGATCAA+AGG 0.629891 7_3:-71116590 None:intergenic
GTTAAGCCACGGACACTGGT+GGG 0.632248 7_3:+71116180 Msa1121090:intron
ATTTCACAAGGTCTTGATCG+TGG 0.637712 7_3:+71112733 Msa1121090:CDS
AAATATGCAGTAAACGAACA+AGG 0.638462 7_3:-71117297 None:intergenic
GTGAATTGAATCGAATGCGG+AGG 0.640694 7_3:-71112514 None:intergenic
TCGAAAATGGATGATAGAGG+TGG 0.645819 7_3:+71112688 Msa1121090:exon
ACCCTTGATGATATCACACA+TGG 0.657299 7_3:-71117054 None:intergenic
TTTCCTTGACAGTTAAGCCA+CGG 0.658380 7_3:+71116169 Msa1121090:intron
TCAGAGCAGTGGAAAGACAT+GGG 0.661625 7_3:+71114457 Msa1121090:CDS
TCAAGTTAAAACTAGACTGG+CGG 0.673365 7_3:-71116943 None:intergenic
AATATGCAGTAAACGAACAA+GGG 0.678879 7_3:-71117296 None:intergenic
GCTGGCTGACATACAGTCAG+GGG 0.680531 7_3:+71117120 Msa1121090:three_prime_UTR
GCCATGTGTGATATCATCAA+GGG 0.683404 7_3:+71117053 Msa1121090:three_prime_UTR
ATGTCTGACAGAAAATGAGT+CGG 0.689115 7_3:+71116567 Msa1121090:intron
AATGTGAATTGAATCGAATG+CGG 0.707163 7_3:-71112517 None:intergenic
TAACATTTGAGCAAAGACCA+AGG 0.711307 7_3:+71117027 Msa1121090:three_prime_UTR
GCTGTTCGTAGAATTTCACA+AGG 0.713414 7_3:+71112721 Msa1121090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATGTTTAATATATTAT+AGG + chr7_3:71114850-71114869 Msa1121090:intron 10.0%
!!! ATTTTTGCATTTTTTTTTTA+AGG + chr7_3:71115450-71115469 Msa1121090:intron 10.0%
!! AGAGTAAAAATTATAATAAA+AGG - chr7_3:71115747-71115766 None:intergenic 10.0%
!! TAAGAAAAAAAAATATTGTA+AGG - chr7_3:71116052-71116071 None:intergenic 10.0%
!!! TAAATTGATAAAGTTTTGAT+TGG + chr7_3:71112900-71112919 Msa1121090:intron 15.0%
!! AAAATTTGTATTAAGAAAGT+TGG + chr7_3:71113599-71113618 Msa1121090:intron 15.0%
!!! AATGTTTTTCAATTGTATTT+CGG + chr7_3:71113912-71113931 Msa1121090:intron 15.0%
!! TGTTTAATATATTATAGGTT+TGG + chr7_3:71114855-71114874 Msa1121090:intron 15.0%
!!! TGTCTTTATTAATCTAATTT+TGG + chr7_3:71115512-71115531 Msa1121090:intron 15.0%
!!! AAATAAATTTTGATTTCTCT+TGG + chr7_3:71115985-71116004 Msa1121090:intron 15.0%
!! AGAAAAGAAAGAATCTAATA+GGG - chr7_3:71112389-71112408 None:intergenic 20.0%
!! AAGGAAAAAAAATTGAATAC+CGG - chr7_3:71112779-71112798 None:intergenic 20.0%
!! AAGCTGTTTATTATGTTTAA+TGG + chr7_3:71112995-71113014 Msa1121090:intron 20.0%
!!! TCATTTTCTCAAATTGTTAA+TGG - chr7_3:71113301-71113320 None:intergenic 20.0%
!! TATTAAGAAAGTTGGAAAAT+CGG + chr7_3:71113607-71113626 Msa1121090:intron 20.0%
!!! ATGTTTTTCAATTGTATTTC+GGG + chr7_3:71113913-71113932 Msa1121090:intron 20.0%
!! TAAGATGAACAAAGATAAAA+AGG - chr7_3:71114018-71114037 None:intergenic 20.0%
!! TGCAATATTAAAAAAGAGTA+GGG - chr7_3:71114071-71114090 None:intergenic 20.0%
!!! TACTCTTTTTTAATATTGCA+CGG + chr7_3:71114071-71114090 Msa1121090:intron 20.0%
!!! ATTTTAGGTAGATAATATTC+TGG + chr7_3:71114506-71114525 Msa1121090:intron 20.0%
!! AGTGAAAATAAATTAGAATG+AGG - chr7_3:71114549-71114568 None:intergenic 20.0%
!! TTTCTATTTATGCATATCAT+TGG + chr7_3:71114574-71114593 Msa1121090:intron 20.0%
!! AAAAATAAAACAGATCATAC+CGG - chr7_3:71114655-71114674 None:intergenic 20.0%
!! TATATTTCATCCAAAAGAAA+GGG + chr7_3:71114784-71114803 Msa1121090:intron 20.0%
!!! AATAAAATTTCCCTTTCTTT+TGG - chr7_3:71114797-71114816 None:intergenic 20.0%
!! CTGAATAAAATTATTGCTTT+CGG + chr7_3:71114981-71115000 Msa1121090:intron 20.0%
!! TGAATAAAATTATTGCTTTC+GGG + chr7_3:71114982-71115001 Msa1121090:intron 20.0%
!!! TTGCATATTTTCAGTTTTTT+GGG + chr7_3:71115319-71115338 Msa1121090:intron 20.0%
!! TAGATTAATAAAGACAATTC+AGG - chr7_3:71115508-71115527 None:intergenic 20.0%
!!! AAATAGATTTAAGGTTTGAA+CGG - chr7_3:71115558-71115577 None:intergenic 20.0%
!! ATAAATGCTTATAAAGTTAC+AGG - chr7_3:71115893-71115912 None:intergenic 20.0%
!! TATTTAAAAACACAAATAGC+TGG - chr7_3:71115970-71115989 None:intergenic 20.0%
!! TCAAATTCAATTCATTACTT+GGG - chr7_3:71116121-71116140 None:intergenic 20.0%
!! ATCAAATTCAATTCATTACT+TGG - chr7_3:71116122-71116141 None:intergenic 20.0%
!! ATAAAATCACAACAACTTTA+TGG - chr7_3:71116352-71116371 None:intergenic 20.0%
!! TTTATCTACAAAATAAACTC+AGG - chr7_3:71116691-71116710 None:intergenic 20.0%
!!! TGAGTTTATTTTGTAGATAA+AGG + chr7_3:71116690-71116709 Msa1121090:intron 20.0%
!!! GAGTTTATTTTGTAGATAAA+GGG + chr7_3:71116691-71116710 Msa1121090:intron 20.0%
!!! TAAAAGTTTTTGAAGATTGT+TGG + chr7_3:71116752-71116771 Msa1121090:intron 20.0%
! AAAGAATCTAATAGGGTTTA+TGG - chr7_3:71112382-71112401 None:intergenic 25.0%
! GAGAAAAGAAAGAATCTAAT+AGG - chr7_3:71112390-71112409 None:intergenic 25.0%
! GAGAAAATCGAAAAAATTGA+AGG - chr7_3:71112798-71112817 None:intergenic 25.0%
! ATATTGAGCTTAGTTTACTA+TGG + chr7_3:71112947-71112966 Msa1121090:intron 25.0%
! AGCATTCATGTAATTCTTAA+TGG + chr7_3:71113063-71113082 Msa1121090:intron 25.0%
! ACAAATGTATTATGTGATGA+AGG + chr7_3:71113529-71113548 Msa1121090:intron 25.0%
! GTGCAATATTAAAAAAGAGT+AGG - chr7_3:71114072-71114091 None:intergenic 25.0%
!! TTTTTATGCATGATGATCTT+AGG + chr7_3:71114375-71114394 Msa1121090:intron 25.0%
!! CTGTGTTGTAATCAATATTT+TGG + chr7_3:71114687-71114706 Msa1121090:intron 25.0%
!! TCATACAACTCTAAAAAGTA+AGG - chr7_3:71114715-71114734 None:intergenic 25.0%
! TTGGATGAAATATACTAATG+TGG - chr7_3:71114778-71114797 None:intergenic 25.0%
! GTATATTTCATCCAAAAGAA+AGG + chr7_3:71114783-71114802 Msa1121090:intron 25.0%
!! TATTATAGGTTTGGAATCAA+TGG + chr7_3:71114864-71114883 Msa1121090:intron 25.0%
!! AGCAATAATTTTATTCAGCA+AGG - chr7_3:71114979-71114998 None:intergenic 25.0%
! TCATCCATGATAGAAAAATT+TGG + chr7_3:71115014-71115033 Msa1121090:intron 25.0%
! CATCCATGATAGAAAAATTT+GGG + chr7_3:71115015-71115034 Msa1121090:intron 25.0%
! AAACCAATAAAACATCAATC+TGG - chr7_3:71115041-71115060 None:intergenic 25.0%
!!! TATTGGTTTATATTTGAGAC+AGG + chr7_3:71115052-71115071 Msa1121090:intron 25.0%
!! ATTGGTTTATATTTGAGACA+GGG + chr7_3:71115053-71115072 Msa1121090:intron 25.0%
! CAAAAAACTGAAAATATGCA+AGG - chr7_3:71115320-71115339 None:intergenic 25.0%
!! CTTGCATATTTTCAGTTTTT+TGG + chr7_3:71115318-71115337 Msa1121090:intron 25.0%
!! TGCATATTTTCAGTTTTTTG+GGG + chr7_3:71115320-71115339 Msa1121090:intron 25.0%
! AATGGTTGTCTATTCAATTT+GGG + chr7_3:71115375-71115394 Msa1121090:intron 25.0%
! ATAGTTATGTTTCAGACATA+TGG + chr7_3:71115399-71115418 Msa1121090:intron 25.0%
! GCAAAGTCAAAATAGATTTA+AGG - chr7_3:71115567-71115586 None:intergenic 25.0%
!!! AATCTTTTCAAGATCTTTTG+CGG + chr7_3:71115610-71115629 Msa1121090:CDS 25.0%
! CAAATTCAATTCATTACTTG+GGG - chr7_3:71116120-71116139 None:intergenic 25.0%
!!! ACTCATTTTTTCCTACAATT+AGG + chr7_3:71116264-71116283 Msa1121090:intron 25.0%
!!! ATTTTTTCCTACAATTAGGA+AGG + chr7_3:71116268-71116287 Msa1121090:intron 25.0%
!!! TTTTTTCCTACAATTAGGAA+GGG + chr7_3:71116269-71116288 Msa1121090:intron 25.0%
!! AAGTTTGGAACTTAACAAAA+TGG + chr7_3:71116299-71116318 Msa1121090:intron 25.0%
!! AGTTTGGAACTTAACAAAAT+GGG + chr7_3:71116300-71116319 Msa1121090:intron 25.0%
!! AAGTTGTTGTGATTTTATGA+AGG + chr7_3:71116354-71116373 Msa1121090:intron 25.0%
!! TTTTATGAAGGCTTTTTGTA+AGG + chr7_3:71116366-71116385 Msa1121090:intron 25.0%
! TGTTAGTTAAATGTTGAAGT+GGG - chr7_3:71117012-71117031 None:intergenic 25.0%
! ATGTTAGTTAAATGTTGAAG+TGG - chr7_3:71117013-71117032 None:intergenic 25.0%
! AGTTAAGATTTAAATCCTGT+TGG + chr7_3:71117087-71117106 Msa1121090:three_prime_UTR 25.0%
! AGATTAGATTGTAATGATTG+TGG + chr7_3:71117180-71117199 Msa1121090:three_prime_UTR 25.0%
AAACAAAGAAAACGCCTTAA+CGG + chr7_3:71112279-71112298 Msa1121090:five_prime_UTR 30.0%
AGAGAGAAAGAGAAAGAAAA+TGG - chr7_3:71112414-71112433 None:intergenic 30.0%
AATGTGAATTGAATCGAATG+CGG - chr7_3:71112520-71112539 None:intergenic 30.0%
AATTCGAAAATGGATGATAG+AGG + chr7_3:71112685-71112704 Msa1121090:exon 30.0%
TTGAAAGGAATAAACGTTGA+AGG - chr7_3:71112824-71112843 None:intergenic 30.0%
!! CGCAATTTTGAAAAGTTGAA+AGG - chr7_3:71112839-71112858 None:intergenic 30.0%
AATATAGACAAAATCACGAG+AGG - chr7_3:71112868-71112887 None:intergenic 30.0%
!!! GTTTTGATTGGATATAGTTG+AGG + chr7_3:71112912-71112931 Msa1121090:intron 30.0%
GAGTACTTTATTATGTGATG+AGG + chr7_3:71113025-71113044 Msa1121090:intron 30.0%
TGATCCTTGTACAAAAATAG+TGG + chr7_3:71113126-71113145 Msa1121090:intron 30.0%
!!! TCTTCCACTATTTTTGTACA+AGG - chr7_3:71113133-71113152 None:intergenic 30.0%
TTGTAAATAAAGCAAGCTAG+TGG + chr7_3:71113154-71113173 Msa1121090:intron 30.0%
AATATGACCACAGAATATAG+TGG - chr7_3:71113219-71113238 None:intergenic 30.0%
CTATATTCTGTGGTCATATT+TGG + chr7_3:71113219-71113238 Msa1121090:intron 30.0%
TAATTGAAGTAATCACGTGT+CGG + chr7_3:71113323-71113342 Msa1121090:intron 30.0%
TTAACTCTCTATTTCCTTCT+CGG - chr7_3:71113450-71113469 None:intergenic 30.0%
AATGTATTATGTGATGAAGG+TGG + chr7_3:71113532-71113551 Msa1121090:intron 30.0%
!!! TTTTGATTTAACTCCATACC+AGG + chr7_3:71113751-71113770 Msa1121090:CDS 30.0%
! TCTCTTTTCATCTTTGTACA+CGG + chr7_3:71113842-71113861 Msa1121090:intron 30.0%
GATGAAAGCAATTGAACATT+CGG - chr7_3:71113955-71113974 None:intergenic 30.0%
! TTTGTTCATCTTATTTGCCT+TGG + chr7_3:71114025-71114044 Msa1121090:intron 30.0%
! TTGTTCATCTTATTTGCCTT+GGG + chr7_3:71114026-71114045 Msa1121090:intron 30.0%
! ATGCTGAATTTTCCATTTTC+AGG + chr7_3:71114104-71114123 Msa1121090:intron 30.0%
! TTTTAATAGAAGAGACTACC+TGG - chr7_3:71114194-71114213 None:intergenic 30.0%
CATGAAAAGCTATATGTACA+TGG - chr7_3:71114291-71114310 None:intergenic 30.0%
ATGATCTTAGGAATCCTTAA+GGG + chr7_3:71114387-71114406 Msa1121090:intron 30.0%
ATCTACCTAAAATCTGTTGA+TGG - chr7_3:71114499-71114518 None:intergenic 30.0%
TATTTATGCATATCATTGGC+AGG + chr7_3:71114578-71114597 Msa1121090:intron 30.0%
ATTTATGCATATCATTGGCA+GGG + chr7_3:71114579-71114598 Msa1121090:intron 30.0%
TGATTACAACACAGAAAAGA+TGG - chr7_3:71114681-71114700 None:intergenic 30.0%
! GTTACTTTGTTAACCTTTCT+AGG - chr7_3:71114756-71114775 None:intergenic 30.0%
TTTCTTAAAGTTAAACAGCC+TGG + chr7_3:71114815-71114834 Msa1121090:intron 30.0%
TTCTTAAAGTTAAACAGCCT+GGG + chr7_3:71114816-71114835 Msa1121090:intron 30.0%
TGAAACAACAAAGACCATTT+GGG - chr7_3:71114907-71114926 None:intergenic 30.0%
ATGAAACAACAAAGACCATT+TGG - chr7_3:71114908-71114927 None:intergenic 30.0%
TTCATGCATGCTTAATTAGA+TGG + chr7_3:71114923-71114942 Msa1121090:intron 30.0%
! TTGGTTTATATTTGAGACAG+GGG + chr7_3:71115054-71115073 Msa1121090:intron 30.0%
AGAAAATCATGGAAGGAATT+GGG - chr7_3:71115154-71115173 None:intergenic 30.0%
TTTCAACAGAAAATCATGGA+AGG - chr7_3:71115161-71115180 None:intergenic 30.0%
GCAGGTAATTTCCAAAAATA+TGG + chr7_3:71115260-71115279 Msa1121090:intron 30.0%
! AAGAGGATACACCATATTTT+TGG - chr7_3:71115274-71115293 None:intergenic 30.0%
!! CATGTTGTGTTTGTTATGAA+TGG + chr7_3:71115357-71115376 Msa1121090:intron 30.0%
GAATGGTTGTCTATTCAATT+TGG + chr7_3:71115374-71115393 Msa1121090:intron 30.0%
ATGGTTGTCTATTCAATTTG+GGG + chr7_3:71115376-71115395 Msa1121090:intron 30.0%
AAAGACAATTCAGGAAAACA+GGG - chr7_3:71115499-71115518 None:intergenic 30.0%
TAAAGACAATTCAGGAAAAC+AGG - chr7_3:71115500-71115519 None:intergenic 30.0%
CAGCATATATCATGTCTAAA+AGG + chr7_3:71115767-71115786 Msa1121090:intron 30.0%
TCATGTCTAAAAGGATACAT+AGG + chr7_3:71115776-71115795 Msa1121090:intron 30.0%
CATGTCTAAAAGGATACATA+GGG + chr7_3:71115777-71115796 Msa1121090:intron 30.0%
ATGTCTAAAAGGATACATAG+GGG + chr7_3:71115778-71115797 Msa1121090:intron 30.0%
ATGCTTATAAAGTTACAGGT+GGG - chr7_3:71115889-71115908 None:intergenic 30.0%
AATGCTTATAAAGTTACAGG+TGG - chr7_3:71115890-71115909 None:intergenic 30.0%
TTTCTCTTGGTTTATCTAAC+AGG + chr7_3:71115998-71116017 Msa1121090:intron 30.0%
GTTGTTGACAAGTCAAATTT+GGG - chr7_3:71116030-71116049 None:intergenic 30.0%
TAAGCGAAAAAAGATGAAAG+AGG - chr7_3:71116406-71116425 None:intergenic 30.0%
! GTTTTCTGATCTCATTTGAT+TGG + chr7_3:71116428-71116447 Msa1121090:intron 30.0%
TATGCAATAGAGAAGATCAA+AGG - chr7_3:71116593-71116612 None:intergenic 30.0%
TAAGATTTAAATCCTGTTGG+AGG + chr7_3:71117090-71117109 Msa1121090:three_prime_UTR 30.0%
TGGACATTAACGGAATATAT+AGG - chr7_3:71117210-71117229 None:intergenic 30.0%
ATTCCGTTAATGTCCATTAA+TGG + chr7_3:71117214-71117233 Msa1121090:three_prime_UTR 30.0%
TTCCGTTAATGTCCATTAAT+GGG + chr7_3:71117215-71117234 Msa1121090:three_prime_UTR 30.0%
! TTCCCATTAATGGACATTAA+CGG - chr7_3:71117220-71117239 None:intergenic 30.0%
TGTCCATTAATGGGAAAATA+CGG + chr7_3:71117224-71117243 Msa1121090:three_prime_UTR 30.0%
! AATCCGTATTTTCCCATTAA+TGG - chr7_3:71117230-71117249 None:intergenic 30.0%
AATATGCAGTAAACGAACAA+GGG - chr7_3:71117299-71117318 None:intergenic 30.0%
AAATATGCAGTAAACGAACA+AGG - chr7_3:71117300-71117319 None:intergenic 30.0%
TTCGTTTACTGCATATTTGT+TGG + chr7_3:71117302-71117321 Msa1121090:three_prime_UTR 30.0%
ACAGAACAAGATCGTAAAAT+TGG - chr7_3:71117434-71117453 None:intergenic 30.0%
GATTATTCATTCTGCCGTTA+AGG - chr7_3:71112296-71112315 None:intergenic 35.0%
TAGAAAGTGGAAGAAAGATC+TGG - chr7_3:71112474-71112493 None:intergenic 35.0%
GAGGAAAAAAGAGGAAGAAA+CGG - chr7_3:71112498-71112517 None:intergenic 35.0%
CAAGACGAAGAATTCGAAAA+TGG + chr7_3:71112675-71112694 Msa1121090:exon 35.0%
ATTGAATACCGGAAGATGAA+TGG - chr7_3:71112768-71112787 None:intergenic 35.0%
TATTTGACAAGGACATGTGT+TGG + chr7_3:71113379-71113398 Msa1121090:intron 35.0%
CCAACAAATATTACCTGGTA+TGG - chr7_3:71113767-71113786 None:intergenic 35.0%
CCATACCAGGTAATATTTGT+TGG + chr7_3:71113764-71113783 Msa1121090:intron 35.0%
TGATGCCAACAAATATTACC+TGG - chr7_3:71113772-71113791 None:intergenic 35.0%
TTTCACATGGTTGGGTTTAA+TGG + chr7_3:71113989-71114008 Msa1121090:intron 35.0%
! GACAAATTAGTTTGATCCCA+AGG - chr7_3:71114045-71114064 None:intergenic 35.0%
TCAGGGATAGAACTATCATA+TGG - chr7_3:71114168-71114187 None:intergenic 35.0%
GATGATCTTAGGAATCCTTA+AGG + chr7_3:71114386-71114405 Msa1121090:intron 35.0%
TTTCCTGAAGAAGAACTCAA+TGG + chr7_3:71114427-71114446 Msa1121090:CDS 35.0%
! AGGATCCATCAACAGATTTT+AGG + chr7_3:71114491-71114510 Msa1121090:CDS 35.0%
TTTATGCATATCATTGGCAG+GGG + chr7_3:71114580-71114599 Msa1121090:intron 35.0%
!!! AGAATTTGCTGTTTTTTGCC+AGG + chr7_3:71114623-71114642 Msa1121090:CDS 35.0%
!!! GTTTTTTGCCAGGAATTTTC+CGG + chr7_3:71114633-71114652 Msa1121090:CDS 35.0%
ATGAAAATGTATACCTACCC+AGG - chr7_3:71114836-71114855 None:intergenic 35.0%
AAAGACCATTTGGGAAGAAA+TGG - chr7_3:71114898-71114917 None:intergenic 35.0%
! CTTAATTAGATGGTTGATGC+AGG + chr7_3:71114933-71114952 Msa1121090:intron 35.0%
! TGGCCCAAATTTTTCTATCA+TGG - chr7_3:71115021-71115040 None:intergenic 35.0%
!!! CAGGGGATTTTGAAATTGAT+TGG + chr7_3:71115071-71115090 Msa1121090:intron 35.0%
GAAAATCATGGAAGGAATTG+GGG - chr7_3:71115153-71115172 None:intergenic 35.0%
CAGAAAATCATGGAAGGAAT+TGG - chr7_3:71115155-71115174 None:intergenic 35.0%
! GGGTTTTCAACAGAAAATCA+TGG - chr7_3:71115165-71115184 None:intergenic 35.0%
CACAATGCTAAGACAAGTTT+GGG - chr7_3:71115185-71115204 None:intergenic 35.0%
!! TTTTTGGAAATTACCTGCTG+AGG - chr7_3:71115258-71115277 None:intergenic 35.0%
TGAAAATATGCAAGGAAGCT+CGG - chr7_3:71115312-71115331 None:intergenic 35.0%
!!! CAGTTTTTTGGGGTTGAAAT+AGG + chr7_3:71115330-71115349 Msa1121090:intron 35.0%
TGCTTATAAAGTTACAGGTG+GGG - chr7_3:71115888-71115907 None:intergenic 35.0%
AATAGCTGGTAATATTTGCG+AGG - chr7_3:71115956-71115975 None:intergenic 35.0%
TTGACAAGTCAAATTTGGGA+CGG - chr7_3:71116026-71116045 None:intergenic 35.0%
GGTTGTTGACAAGTCAAATT+TGG - chr7_3:71116031-71116050 None:intergenic 35.0%
TTCAATTCATTACTTGGGGA+AGG - chr7_3:71116116-71116135 None:intergenic 35.0%
AACAATAAAAGCTACCTGCA+AGG - chr7_3:71116224-71116243 None:intergenic 35.0%
ATGTCTGACAGAAAATGAGT+CGG + chr7_3:71116567-71116586 Msa1121090:intron 35.0%
TTGCATAACATTCAAGCTGA+TGG + chr7_3:71116606-71116625 Msa1121090:CDS 35.0%
! GTACATCTTCTAGTTGTGTA+AGG - chr7_3:71116882-71116901 None:intergenic 35.0%
TCAAGTTAAAACTAGACTGG+CGG - chr7_3:71116946-71116965 None:intergenic 35.0%
! CCTTCAAGTTAAAACTAGAC+TGG - chr7_3:71116949-71116968 None:intergenic 35.0%
!!! CCAGTCTAGTTTTAACTTGA+AGG + chr7_3:71116946-71116965 Msa1121090:three_prime_UTR 35.0%
TAACATTTGAGCAAAGACCA+AGG + chr7_3:71117027-71117046 Msa1121090:three_prime_UTR 35.0%
! AAATGTAGGTTTGCTTTGCT+TGG + chr7_3:71117149-71117168 Msa1121090:three_prime_UTR 35.0%
GGATTGCAGTATCATAATTC+AGG + chr7_3:71117245-71117264 Msa1121090:three_prime_UTR 35.0%
! TATACTCGCTTCCTATCTTT+TGG + chr7_3:71117400-71117419 Msa1121090:three_prime_UTR 35.0%
CTTTCTCTCTCTTTCTTTCC+CGG + chr7_3:71112424-71112443 Msa1121090:five_prime_UTR 40.0%
TTTCTCTCTCTTTCTTTCCC+GGG + chr7_3:71112425-71112444 Msa1121090:five_prime_UTR 40.0%
! TTGGGATTGTAGATTTTCCC+GGG - chr7_3:71112445-71112464 None:intergenic 40.0%
! GTTGGGATTGTAGATTTTCC+CGG - chr7_3:71112446-71112465 None:intergenic 40.0%
! AGAAAGATCTGGAACAGGTT+GGG - chr7_3:71112463-71112482 None:intergenic 40.0%
! AAGAAAGATCTGGAACAGGT+TGG - chr7_3:71112464-71112483 None:intergenic 40.0%
AGGAAGAAACGGTTAGAAAG+TGG - chr7_3:71112487-71112506 None:intergenic 40.0%
TCGAAAATGGATGATAGAGG+TGG + chr7_3:71112688-71112707 Msa1121090:exon 40.0%
GCTGTTCGTAGAATTTCACA+AGG + chr7_3:71112721-71112740 Msa1121090:CDS 40.0%
ATTTCACAAGGTCTTGATCG+TGG + chr7_3:71112733-71112752 Msa1121090:CDS 40.0%
AAGCAAGCCACTATATTCTG+TGG + chr7_3:71113209-71113228 Msa1121090:intron 40.0%
TGTCAGTGCTGTATTTGACA+AGG + chr7_3:71113368-71113387 Msa1121090:intron 40.0%
! ACACCTTCCATTAGAAGTGT+CGG + chr7_3:71113411-71113430 Msa1121090:intron 40.0%
!! AATAGCACCGACACTTCTAA+TGG - chr7_3:71113421-71113440 None:intergenic 40.0%
!! GTGCTATTTAGTAACCGAGA+AGG + chr7_3:71113433-71113452 Msa1121090:intron 40.0%
CAATGAGTGTTAGCTCATTG+TGG + chr7_3:71113470-71113489 Msa1121090:intron 40.0%
TGAGTTTGTGACAGGATCAA+CGG + chr7_3:71113664-71113683 Msa1121090:CDS 40.0%
CACATACACAAGACAAACCT+CGG - chr7_3:71113700-71113719 None:intergenic 40.0%
CAGCACTTCAACACTCTTTA+AGG + chr7_3:71113804-71113823 Msa1121090:intron 40.0%
GCAATTGAACATTCGGTTCA+CGG - chr7_3:71113948-71113967 None:intergenic 40.0%
CATGACACCAATGTTTCACA+TGG + chr7_3:71113976-71113995 Msa1121090:intron 40.0%
ACACCAATGTTTCACATGGT+TGG + chr7_3:71113980-71113999 Msa1121090:intron 40.0%
CACCAATGTTTCACATGGTT+GGG + chr7_3:71113981-71114000 Msa1121090:intron 40.0%
AACCCAACCATGTGAAACAT+TGG - chr7_3:71113986-71114005 None:intergenic 40.0%
GCAAGCATTCTTCCTGAAAA+TGG - chr7_3:71114119-71114138 None:intergenic 40.0%
! ACATGGCTTGAAGTGTTTGA+TGG - chr7_3:71114274-71114293 None:intergenic 40.0%
GATATATACGTTTGCACGTG+TGG - chr7_3:71114331-71114350 None:intergenic 40.0%
AGGAATCCTTAAGGGCTTTA+TGG + chr7_3:71114395-71114414 Msa1121090:intron 40.0%
AGCATTCCATAAAGCCCTTA+AGG - chr7_3:71114404-71114423 None:intergenic 40.0%
AAGCCATTGAGTTCTTCTTC+AGG - chr7_3:71114433-71114452 None:intergenic 40.0%
AGATCATACCGGAAAATTCC+TGG - chr7_3:71114644-71114663 None:intergenic 40.0%
TAAAGTTAAACAGCCTGGGT+AGG + chr7_3:71114820-71114839 Msa1121090:intron 40.0%
GTCATCCATTTCTTCCCAAA+TGG + chr7_3:71114890-71114909 Msa1121090:intron 40.0%
! GGGCCAGATTGATGTTTTAT+TGG + chr7_3:71115035-71115054 Msa1121090:intron 40.0%
CCACAATGCTAAGACAAGTT+TGG - chr7_3:71115186-71115205 None:intergenic 40.0%
CCAAACTTGTCTTAGCATTG+TGG + chr7_3:71115183-71115202 Msa1121090:intron 40.0%
GAAAATATGCAAGGAAGCTC+GGG - chr7_3:71115311-71115330 None:intergenic 40.0%
CAAATGCTAGATCTTGAAGC+AGG + chr7_3:71115708-71115727 Msa1121090:CDS 40.0%
TCTAAAAGGATACATAGGGG+AGG + chr7_3:71115781-71115800 Msa1121090:intron 40.0%
! AGGGGAGGCATATATATGTA+CGG + chr7_3:71115796-71115815 Msa1121090:intron 40.0%
TTTGAAAGACCAGAACGTGT+TGG + chr7_3:71115837-71115856 Msa1121090:intron 40.0%
! TGGGGCTTATGTCATTTGAT+TGG - chr7_3:71115870-71115889 None:intergenic 40.0%
TTTCCTTGACAGTTAAGCCA+CGG + chr7_3:71116169-71116188 Msa1121090:intron 40.0%
CTGTTTCCCTTCCTAATTGT+AGG - chr7_3:71116278-71116297 None:intergenic 40.0%
CTACAATTAGGAAGGGAAAC+AGG + chr7_3:71116276-71116295 Msa1121090:intron 40.0%
! TCAAGCTGATGGACAATCAA+TGG + chr7_3:71116617-71116636 Msa1121090:CDS 40.0%
CTAGTTGTGTAAGGTCTTCA+AGG - chr7_3:71116873-71116892 None:intergenic 40.0%
CGTGTGAGAAGTTTGTATGA+GGG - chr7_3:71116904-71116923 None:intergenic 40.0%
TCGTGTGAGAAGTTTGTATG+AGG - chr7_3:71116905-71116924 None:intergenic 40.0%
AAATGTTGAAGTGGGAAGTG+CGG - chr7_3:71117004-71117023 None:intergenic 40.0%
AGCCATGTGTGATATCATCA+AGG + chr7_3:71117052-71117071 Msa1121090:three_prime_UTR 40.0%
GCCATGTGTGATATCATCAA+GGG + chr7_3:71117053-71117072 Msa1121090:three_prime_UTR 40.0%
! ACCCTTGATGATATCACACA+TGG - chr7_3:71117057-71117076 None:intergenic 40.0%
TGCAGTATCATAATTCAGGC+AGG + chr7_3:71117249-71117268 Msa1121090:three_prime_UTR 40.0%
TGGCGACAATACCAAAAGAT+AGG - chr7_3:71117414-71117433 None:intergenic 40.0%
! GTGGAAGAAAGATCTGGAAC+AGG - chr7_3:71112468-71112487 None:intergenic 45.0%
TCGAATGCGGAGGAAAAAAG+AGG - chr7_3:71112507-71112526 None:intergenic 45.0%
GTGAATTGAATCGAATGCGG+AGG - chr7_3:71112517-71112536 None:intergenic 45.0%
AACGCGTACCATTCATCTTC+CGG + chr7_3:71112757-71112776 Msa1121090:CDS 45.0%
CAAGCTAGTGGTGAATCTAG+TGG + chr7_3:71113166-71113185 Msa1121090:intron 45.0%
ACACGTGTCCTTGTCAGATA+CGG - chr7_3:71113351-71113370 None:intergenic 45.0%
! CTTCTAATGGAAGGTGTGTC+CGG - chr7_3:71113408-71113427 None:intergenic 45.0%
GTTACAGCTGAGTTTGTGAC+AGG + chr7_3:71113656-71113675 Msa1121090:intron 45.0%
TTCAGGAAGAATGCTTGCAG+AGG + chr7_3:71114121-71114140 Msa1121090:intron 45.0%
ATGGCTTGATTTCAGAGCAG+TGG + chr7_3:71114446-71114465 Msa1121090:CDS 45.0%
TTCAGAGCAGTGGAAAGACA+TGG + chr7_3:71114456-71114475 Msa1121090:CDS 45.0%
TCAGAGCAGTGGAAAGACAT+GGG + chr7_3:71114457-71114476 Msa1121090:CDS 45.0%
! GGGTGGTGGTTACATATCAT+TGG + chr7_3:71114600-71114619 Msa1121090:CDS 45.0%
CCTTTCTAGGCACTCAAATG+AGG - chr7_3:71114743-71114762 None:intergenic 45.0%
CCTCATTTGAGTGCCTAGAA+AGG + chr7_3:71114740-71114759 Msa1121090:intron 45.0%
AAATGCTGAGATTCCTCAGC+AGG + chr7_3:71115242-71115261 Msa1121090:intron 45.0%
GGGATAAGAGTCGAACAAAG+AGG - chr7_3:71115291-71115310 None:intergenic 45.0%
GTTTGAACGGACAGTTCTTG+AGG - chr7_3:71115545-71115564 None:intergenic 45.0%
! TCAAGATCTTTTGCGGAAGC+AGG + chr7_3:71115617-71115636 Msa1121090:CDS 45.0%
TAACACCAGCAACCGCAAAT+GGG - chr7_3:71115668-71115687 None:intergenic 45.0%
TTAACACCAGCAACCGCAAA+TGG - chr7_3:71115669-71115688 None:intergenic 45.0%
! GGGGAGGCATATATATGTAC+GGG + chr7_3:71115797-71115816 Msa1121090:intron 45.0%
! GGTTTAGAACCAACACGTTC+TGG - chr7_3:71115849-71115868 None:intergenic 45.0%
AGGAAGGGAAACAGGAAGTT+TGG + chr7_3:71116284-71116303 Msa1121090:intron 45.0%
GAAGTTCTTTCTCCAGCTGA+CGG - chr7_3:71116849-71116868 None:intergenic 45.0%
ATATCACACATGGCTCACCT+TGG - chr7_3:71117047-71117066 None:intergenic 45.0%
GTGTGATATCATCAAGGGTC+TGG + chr7_3:71117058-71117077 Msa1121090:three_prime_UTR 45.0%
TGATATCATCAAGGGTCTGG+AGG + chr7_3:71117061-71117080 Msa1121090:three_prime_UTR 45.0%
TCAGGCAGGTTTACGAAAGT+TGG + chr7_3:71117263-71117282 Msa1121090:three_prime_UTR 45.0%
! TGGTATACATGAAGGAGCGC+AGG + chr7_3:71112215-71112234 Msa1121090:five_prime_UTR 50.0%
! CACTGCGATTTTCCAGTTCG+CGG + chr7_3:71112578-71112597 Msa1121090:five_prime_UTR 50.0%
CAAGGACATGTGTTGGACAC+CGG + chr7_3:71113386-71113405 Msa1121090:intron 50.0%
! GCACCGACACTTCTAATGGA+AGG - chr7_3:71113417-71113436 None:intergenic 50.0%
TTGTGACAGGATCAACGGCA+TGG + chr7_3:71113669-71113688 Msa1121090:CDS 50.0%
ACAGGATCAACGGCATGGAT+TGG + chr7_3:71113674-71113693 Msa1121090:CDS 50.0%
! TAGTTCTATCCCTGAGCACC+AGG + chr7_3:71114173-71114192 Msa1121090:CDS 50.0%
AAGAGACTACCTGGTGCTCA+GGG - chr7_3:71114185-71114204 None:intergenic 50.0%
AGCAGTGGAAAGACATGGGA+TGG + chr7_3:71114461-71114480 Msa1121090:CDS 50.0%
TGGAAAGACATGGGATGGCA+AGG + chr7_3:71114466-71114485 Msa1121090:CDS 50.0%
GGAAAGACATGGGATGGCAA+GGG + chr7_3:71114467-71114486 Msa1121090:CDS 50.0%
ATGCATATCATTGGCAGGGG+TGG + chr7_3:71114583-71114602 Msa1121090:intron 50.0%
! GATCTTTTGCGGAAGCAGGA+AGG + chr7_3:71115621-71115640 Msa1121090:CDS 50.0%
AGGAAGGAGTTCGTTCAGTG+TGG + chr7_3:71115637-71115656 Msa1121090:CDS 50.0%
GGAAGGAGTTCGTTCAGTGT+GGG + chr7_3:71115638-71115657 Msa1121090:CDS 50.0%
!! AGTGTGGGAGTACCCATTTG+CGG + chr7_3:71115653-71115672 Msa1121090:CDS 50.0%
TGTCCGTGGCTTAACTGTCA+AGG - chr7_3:71116175-71116194 None:intergenic 50.0%
TTCCATGCACGCGTCATACA+TGG + chr7_3:71116642-71116661 Msa1121090:CDS 50.0%
ATCCATGTATGACGCGTGCA+TGG - chr7_3:71116647-71116666 None:intergenic 50.0%
CCAGCAATACATCCTCCAAC+AGG - chr7_3:71117105-71117124 None:intergenic 50.0%
CCTGTTGGAGGATGTATTGC+TGG + chr7_3:71117102-71117121 Msa1121090:three_prime_UTR 50.0%
! TTGCTGGCTGACATACAGTC+AGG + chr7_3:71117118-71117137 Msa1121090:three_prime_UTR 50.0%
! TGCTGGCTGACATACAGTCA+GGG + chr7_3:71117119-71117138 Msa1121090:three_prime_UTR 50.0%
! GTCAGGGGAGTCTGAAATGT+AGG + chr7_3:71117135-71117154 Msa1121090:three_prime_UTR 50.0%
AGTAAACGAACAAGGGCAGC+AGG - chr7_3:71117292-71117311 None:intergenic 50.0%
! GATTTTCCAGTTCGCGGTCG+TGG + chr7_3:71112584-71112603 Msa1121090:five_prime_UTR 55.0%
TGTCGGCACCGTATCTGACA+AGG + chr7_3:71113340-71113359 Msa1121090:intron 55.0%
GAAGAGACTACCTGGTGCTC+AGG - chr7_3:71114186-71114205 None:intergenic 55.0%
AGACATGGGATGGCAAGGGA+AGG + chr7_3:71114471-71114490 Msa1121090:CDS 55.0%
CATATCATTGGCAGGGGTGG+TGG + chr7_3:71114586-71114605 Msa1121090:intron 55.0%
GAGTACCCATTTGCGGTTGC+TGG + chr7_3:71115660-71115679 Msa1121090:CDS 55.0%
GACAGTTAAGCCACGGACAC+TGG + chr7_3:71116176-71116195 Msa1121090:intron 55.0%
AGTTAAGCCACGGACACTGG+TGG + chr7_3:71116179-71116198 Msa1121090:intron 55.0%
GTTAAGCCACGGACACTGGT+GGG + chr7_3:71116180-71116199 Msa1121090:intron 55.0%
GAAATCTACACGCCGTCAGC+TGG + chr7_3:71116834-71116853 Msa1121090:CDS 55.0%
GCTGGCTGACATACAGTCAG+GGG + chr7_3:71117120-71117139 Msa1121090:three_prime_UTR 55.0%
TTTCCAGTTCGCGGTCGTGG+TGG + chr7_3:71112587-71112606 Msa1121090:five_prime_UTR 60.0%
!! TCAACGGCATGGATTGGCCG+AGG + chr7_3:71113680-71113699 Msa1121090:CDS 60.0%
TCACCACCACGACCGCGAAC+TGG - chr7_3:71112593-71112612 None:intergenic 65.0%
GTTGCTCCCACCAGTGTCCG+TGG - chr7_3:71116189-71116208 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71112209 71117463 71112209 ID=Msa1121090;Name=Msa1121090
chr7_3 mRNA 71112209 71117463 71112209 ID=Msa1121090-mRNA-1;Parent=Msa1121090;Name=Msa1121090-mRNA-1;_AED=0.19;_eAED=0.19;_QI=485|1|1|1|1|1|9|536|266
chr7_3 exon 71112209 71112778 71112209 ID=Msa1121090-mRNA-1:exon:18143;Parent=Msa1121090-mRNA-1
chr7_3 exon 71113663 71113772 71113663 ID=Msa1121090-mRNA-1:exon:18144;Parent=Msa1121090-mRNA-1
chr7_3 exon 71114126 71114194 71114126 ID=Msa1121090-mRNA-1:exon:18145;Parent=Msa1121090-mRNA-1
chr7_3 exon 71114397 71114512 71114397 ID=Msa1121090-mRNA-1:exon:18146;Parent=Msa1121090-mRNA-1
chr7_3 exon 71114600 71114654 71114600 ID=Msa1121090-mRNA-1:exon:18147;Parent=Msa1121090-mRNA-1
chr7_3 exon 71115609 71115729 71115609 ID=Msa1121090-mRNA-1:exon:18148;Parent=Msa1121090-mRNA-1
chr7_3 exon 71116181 71116228 71116181 ID=Msa1121090-mRNA-1:exon:18149;Parent=Msa1121090-mRNA-1
chr7_3 exon 71116578 71116672 71116578 ID=Msa1121090-mRNA-1:exon:18150;Parent=Msa1121090-mRNA-1
chr7_3 exon 71116826 71117463 71116826 ID=Msa1121090-mRNA-1:exon:18151;Parent=Msa1121090-mRNA-1
chr7_3 five_prime_UTR 71112209 71112693 71112209 ID=Msa1121090-mRNA-1:five_prime_utr;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71112694 71112778 71112694 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71113663 71113772 71113663 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71114126 71114194 71114126 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71114397 71114512 71114397 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71114600 71114654 71114600 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71115609 71115729 71115609 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71116181 71116228 71116181 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71116578 71116672 71116578 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 CDS 71116826 71116927 71116826 ID=Msa1121090-mRNA-1:cds;Parent=Msa1121090-mRNA-1
chr7_3 three_prime_UTR 71116928 71117463 71116928 ID=Msa1121090-mRNA-1:three_prime_utr;Parent=Msa1121090-mRNA-1
Gene Sequence

>Msa1121090

ATGGATGATAGAGGTGGTTCTTTCGTCGCTGTTCGTAGAATTTCACAAGGTCTTGATCGTGGCAACGCGTACCATTCATCTTCCGCTGAGTTTGTGACAGGATCAACGGCATGGATTGGCCGAGGTTTGTCTTGTGTATGTGCACAGAGAAGAGAGAGCGATGCTCGACTCTCTTTTGATTTAACTCCATACCAGGAAGAATGCTTGCAGAGGCTTCAGAGTCGTATAGATGTTCCATATGATAGTTCTATCCCTGAGCACCAGGAATCCTTAAGGGCTTTATGGAATGCTGCATTTCCTGAAGAAGAACTCAATGGCTTGATTTCAGAGCAGTGGAAAGACATGGGATGGCAAGGGAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTACATATCATTGGAGAATTTGCTGTTTTTTGCCAGGAATTTTCCGAAATCTTTTCAAGATCTTTTGCGGAAGCAGGAAGGAGTTCGTTCAGTGTGGGAGTACCCATTTGCGGTTGCTGGTGTTAACATTACATTCATGCTTATTCAAATGCTAGATCTTGAAGCAGTTAAGCCACGGACACTGGTGGGAGCAACTTTCTTAAAATTCCTTGCAGAAAATGAGTCGGCCTTTGATCTTCTCTATTGCATAACATTCAAGCTGATGGACAATCAATGGCTTTCCATGCACGCGTCATACATGGATTTTAATACAGTGATGAAATCTACACGCCGTCAGCTGGAGAAAGAACTTCTCCTTGAAGACCTTACACAACTAGAAGATGTACCCTCATACAAACTTCTCACACGATAG
Protein sequence

>Msa1121090

MDDRGGSFVAVRRISQGLDRGNAYHSSSAEFVTGSTAWIGRGLSCVCAQRRESDARLSFDLTPYQEECLQRLQSRIDVPYDSSIPEHQESLRALWNAAFPEEELNGLISEQWKDMGWQGKDPSTDFRGGGYISLENLLFFARNFPKSFQDLLRKQEGVRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKFLAENESAFDLLYCITFKLMDNQWLSMHASYMDFNTVMKSTRRQLEKELLLEDLTQLEDVPSYKLLTR*