Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846770 | KEH27849.1 | 74.503 | 302 | 43 | 3 | 1 | 292 | 5 | 282 | 5.38e-125 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846770 | A0A072UDL1 | 74.503 | 302 | 43 | 3 | 1 | 292 | 5 | 282 | 2.57e-125 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096480 | Msa0846770 | 0.954282 | 4.197164e-112 | -8.615850e-47 |
| Msa0117710 | Msa0846770 | 0.812866 | 3.417924e-51 | -8.615850e-47 |
| Msa0622650 | Msa0846770 | 0.813571 | 2.393380e-51 | -8.615850e-47 |
| Msa0143560 | Msa0846770 | 0.807211 | 5.647976e-50 | -8.615850e-47 |
| Msa0147730 | Msa0846770 | 0.805020 | 1.632885e-49 | -8.615850e-47 |
| Msa0186920 | Msa0846770 | 0.833348 | 5.616011e-56 | -8.615850e-47 |
| Msa0367870 | Msa0846770 | 0.800558 | 1.362570e-48 | -8.615850e-47 |
| Msa0393440 | Msa0846770 | 0.819589 | 1.072975e-52 | -8.615850e-47 |
| Msa0425170 | Msa0846770 | 0.807995 | 3.848692e-50 | -8.615850e-47 |
| Msa0243600 | Msa0846770 | 0.812426 | 4.265199e-51 | -8.615850e-47 |
| Msa0846770 | Msa0907690 | 0.817489 | 3.211649e-52 | -8.615850e-47 |
| Msa0846770 | Msa0964310 | 0.801364 | 9.323611e-49 | -8.615850e-47 |
| Msa0846770 | Msa0989360 | 0.801711 | 7.916530e-49 | -8.615850e-47 |
| Msa0846770 | Msa1032850 | 0.815744 | 7.903317e-52 | -8.615850e-47 |
| Msa0846770 | Msa1121090 | 0.807639 | 4.582413e-50 | -8.615850e-47 |
| Msa0846770 | Msa1181190 | 0.808022 | 3.798797e-50 | -8.615850e-47 |
| Msa0846770 | Msa1353470 | 0.810839 | 9.439580e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846770 | MtrunA17_Chr5g0418651 | 53.846 | 338 | 50 | 6 | 1 | 278 | 8 | 299 | 3.09e-80 | 245 |
| Msa0846770 | MtrunA17_Chr5g0418631 | 83.495 | 103 | 17 | 0 | 190 | 292 | 1 | 103 | 7.74e-53 | 168 |
| Msa0846770 | MtrunA17_Chr5g0418641 | 94.667 | 75 | 4 | 0 | 1 | 75 | 1 | 75 | 1.15e-40 | 135 |
| Msa0846770 | MtrunA17_Chr4g0042991 | 47.586 | 145 | 61 | 5 | 1 | 131 | 8 | 151 | 6.44e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTTCACCAAACTAAAT+TGG | 0.229709 | 5_4:+27508214 | Msa0846770:three_prime_UTR |
| AAAGGGAAGGTTGAAATCTT+TGG | 0.253458 | 5_4:+27507813 | Msa0846770:CDS |
| TTTGTTAGGGTACAACTTAC+TGG | 0.294670 | 5_4:+27506155 | Msa0846770:intron |
| CAAACAATGGGCAGATAAAA+AGG | 0.305616 | 5_4:+27507229 | Msa0846770:CDS |
| AGTATATCCAAGCGATTATC+AGG | 0.348650 | 5_4:+27506997 | Msa0846770:CDS |
| TCATCTGCAGTCTCTCTTTG+AGG | 0.372373 | 5_4:-27507179 | None:intergenic |
| ACGGGGAAGGAAGAAATCTT+TGG | 0.373980 | 5_4:+27507915 | Msa0846770:CDS |
| TTCCTTCACTAGCTTGCGTT+TGG | 0.377600 | 5_4:-27507468 | None:intergenic |
| GTACCTTTGTTTGATCTTGT+CGG | 0.377983 | 5_4:-27507264 | None:intergenic |
| AAACATTACCTTTGAAAGAC+TGG | 0.378035 | 5_4:-27506241 | None:intergenic |
| CGATAGAGCTGATAGATTCC+TGG | 0.379330 | 5_4:+27507423 | Msa0846770:CDS |
| TTGTGTAAACCAATTTAGTT+TGG | 0.381988 | 5_4:-27508223 | None:intergenic |
| TCATAAATTCTCCATTCTAC+TGG | 0.383598 | 5_4:-27505490 | None:intergenic |
| TACCTTTGTTTGATCTTGTC+GGG | 0.388889 | 5_4:-27507263 | None:intergenic |
| ACAAGAAGTAGCTCTTGTTT+TGG | 0.394031 | 5_4:+27508242 | Msa0846770:three_prime_UTR |
| TGGGTGGCTTTCCACAGCCT+TGG | 0.401044 | 5_4:-27507992 | None:intergenic |
| GCAGTCTCTCTTTGAGGGTC+CGG | 0.403874 | 5_4:-27507173 | None:intergenic |
| AATGAAAAGTTACAAGCAAA+AGG | 0.407225 | 5_4:+27508018 | Msa0846770:CDS |
| TGAGAACCCGGAGGCCTCAT+TGG | 0.408314 | 5_4:+27506921 | Msa0846770:CDS |
| ATTGCAGAGTGAACTTGAAC+GGG | 0.409595 | 5_4:+27507897 | Msa0846770:CDS |
| CATCTGCAGTCTCTCTTTGA+GGG | 0.409701 | 5_4:-27507178 | None:intergenic |
| ATTGCAGAGTGAACTTGAAA+AGG | 0.417996 | 5_4:+27507795 | Msa0846770:intron |
| AAATCTTCAAAGTCCCTTCT+CGG | 0.422429 | 5_4:+27506973 | Msa0846770:CDS |
| ATCTTTGCTTCTCAAACTCA+TGG | 0.429534 | 5_4:-27508096 | None:intergenic |
| AAACAGCTTTCAAGTAAAAC+AGG | 0.432687 | 5_4:+27506805 | Msa0846770:CDS |
| ACCTTGGCCAATGAGGCCTC+CGG | 0.441700 | 5_4:-27506928 | None:intergenic |
| ATCTTTACCTGATAATCGCT+TGG | 0.446357 | 5_4:-27507004 | None:intergenic |
| AAAGAGAGACTGCAGATGAA+TGG | 0.451785 | 5_4:+27507183 | Msa0846770:CDS |
| TTGCAGAGTGAACTTGAAAA+GGG | 0.452559 | 5_4:+27507796 | Msa0846770:intron |
| TCTTCAATTAACTCCGCACT+TGG | 0.453600 | 5_4:-27508057 | None:intergenic |
| AAGAGAGACTGCAGATGAAT+GGG | 0.461285 | 5_4:+27507184 | Msa0846770:CDS |
| CCTTGGCCAATGAGGCCTCC+GGG | 0.464827 | 5_4:-27506927 | None:intergenic |
| CTTCCTCTTCTTGTCTACCC+AGG | 0.480371 | 5_4:-27507441 | None:intergenic |
| GAAGAGAACAAAGCTGATCT+TGG | 0.481626 | 5_4:+27506182 | Msa0846770:CDS |
| TGATAACGACTACATAGAAA+TGG | 0.483998 | 5_4:+27506831 | Msa0846770:CDS |
| ATAAAACCCTCCCAGTAGAA+TGG | 0.485705 | 5_4:+27505479 | Msa0846770:five_prime_UTR |
| CGGAGCGAGAGCCAAGGCTG+AGG | 0.494588 | 5_4:+27507861 | Msa0846770:CDS |
| CAGAGCGAGAGCCAAGGCTG+TGG | 0.499780 | 5_4:+27507981 | Msa0846770:CDS |
| ATAATTCTATCTGTAGCTCT+TGG | 0.510608 | 5_4:+27508133 | Msa0846770:three_prime_UTR |
| TGAGCAGAAGAGTGAGAACC+CGG | 0.518079 | 5_4:+27506909 | Msa0846770:CDS |
| ACGCAAGCTAGTGAAGGAAC+AGG | 0.521158 | 5_4:+27507472 | Msa0846770:CDS |
| CATAAATTCTCCATTCTACT+GGG | 0.525358 | 5_4:-27505489 | None:intergenic |
| ATGAAAAGTTACAAGCAAAA+GGG | 0.529836 | 5_4:+27508019 | Msa0846770:CDS |
| AATTCTCCATTCTACTGGGA+GGG | 0.531614 | 5_4:-27505485 | None:intergenic |
| AACATTACCTTTGAAAGACT+GGG | 0.531731 | 5_4:-27506240 | None:intergenic |
| AGAATTTATGAACTCAAATG+AGG | 0.535213 | 5_4:+27505502 | Msa0846770:exon |
| AGTTGTAGAAGAAAAGAAAC+CGG | 0.547416 | 5_4:+27507154 | Msa0846770:CDS |
| GATAGAGCTGATAGATTCCT+GGG | 0.547828 | 5_4:+27507424 | Msa0846770:CDS |
| ATCTTGGTGCCACAAGGGAT+CGG | 0.552116 | 5_4:+27506198 | Msa0846770:CDS |
| AATTGCAGAGTGAACTTGAA+CGG | 0.553990 | 5_4:+27507896 | Msa0846770:CDS |
| CCCGGAGGCCTCATTGGCCA+AGG | 0.558107 | 5_4:+27506927 | Msa0846770:CDS |
| CAGAAAACCCAGTCTTTCAA+AGG | 0.560261 | 5_4:+27506233 | Msa0846770:CDS |
| ATTCCTGGGTAGACAAGAAG+AGG | 0.566055 | 5_4:+27507438 | Msa0846770:CDS |
| GATCGACAAGATCAAACAAT+GGG | 0.566353 | 5_4:+27507217 | Msa0846770:CDS |
| TAGGGTACAACTTACTGGTA+CGG | 0.569596 | 5_4:+27506160 | Msa0846770:intron |
| AAGCTGATCTTGGTGCCACA+AGG | 0.575606 | 5_4:+27506192 | Msa0846770:CDS |
| AGAGTGAACTTGAACGGGGA+AGG | 0.580311 | 5_4:+27507902 | Msa0846770:CDS |
| AGCCAAACGCAAGCTAGTGA+AGG | 0.599861 | 5_4:+27507466 | Msa0846770:CDS |
| GCTTGGATATACTACCGAGA+AGG | 0.608566 | 5_4:-27506987 | None:intergenic |
| TATGTAAATCTAATTGCAGA+CGG | 0.610209 | 5_4:+27507841 | Msa0846770:CDS |
| AGAGTGAACTTGAAAAGGGA+AGG | 0.614135 | 5_4:+27507800 | Msa0846770:intron |
| TGCAGACAGAGCGAGAGCCA+AGG | 0.616360 | 5_4:+27507975 | Msa0846770:CDS |
| AGCTGATCTTGGTGCCACAA+GGG | 0.616690 | 5_4:+27506193 | Msa0846770:CDS |
| AAATTCTCCATTCTACTGGG+AGG | 0.622157 | 5_4:-27505486 | None:intergenic |
| CTTGGATATACTACCGAGAA+GGG | 0.626044 | 5_4:-27506986 | None:intergenic |
| GTTCTCACTCTTCTGCTCAG+AGG | 0.636166 | 5_4:-27506905 | None:intergenic |
| ATTGGCCAAGGTCAAAAGCA+AGG | 0.638241 | 5_4:+27506939 | Msa0846770:CDS |
| GGCAAGTACAATTCCAAGTG+CGG | 0.640534 | 5_4:+27508044 | Msa0846770:CDS |
| AAAGTTACAAGCAAAAGGGA+AGG | 0.645842 | 5_4:+27508023 | Msa0846770:CDS |
| TGATCGACAAGATCAAACAA+TGG | 0.655153 | 5_4:+27507216 | Msa0846770:CDS |
| TGCAGACGGAGCGAGAGCCA+AGG | 0.657239 | 5_4:+27507855 | Msa0846770:CDS |
| GACTACATAGAAATGGTGCA+TGG | 0.661525 | 5_4:+27506838 | Msa0846770:CDS |
| AGCCCGACAAGATCAAACAA+AGG | 0.719711 | 5_4:+27507261 | Msa0846770:CDS |
| GCAGAAGAGTGAGAACCCGG+AGG | 0.721846 | 5_4:+27506912 | Msa0846770:CDS |
| GGCCAAGGTCAAAAGCAAGG+TGG | 0.724398 | 5_4:+27506942 | Msa0846770:CDS |
| TTGCAGAGTGAACTTGAACG+GGG | 0.735768 | 5_4:+27507898 | Msa0846770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATAATAT+TGG | - | chr5_4:27506315-27506334 | None:intergenic | 0.0% |
| !!! | ATATATATATAATATTGGTT+CGG | - | chr5_4:27506310-27506329 | None:intergenic | 10.0% |
| !!! | TTTATATGAACAATTTTGTT+AGG | + | chr5_4:27506141-27506160 | Msa0846770:intron | 15.0% |
| !!! | TTATATGAACAATTTTGTTA+GGG | + | chr5_4:27506142-27506161 | Msa0846770:intron | 15.0% |
| !! | TACAATATTTACCATGTTAA+TGG | + | chr5_4:27505675-27505694 | Msa0846770:intron | 20.0% |
| !!! | TTTTATGTAACATAATCCTA+TGG | - | chr5_4:27505977-27505996 | None:intergenic | 20.0% |
| !! | ACATGTAAAAAAATTCACAA+AGG | - | chr5_4:27506025-27506044 | None:intergenic | 20.0% |
| !!! | ATGAAATAGACTCAATTTTA+TGG | - | chr5_4:27506532-27506551 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTCCTCATTTTTA+TGG | - | chr5_4:27506581-27506600 | None:intergenic | 20.0% |
| !!! | GTTTTTTTACTCATAAGTAA+TGG | - | chr5_4:27507064-27507083 | None:intergenic | 20.0% |
| !!! | CTTGTAACTTTTCATTTTTT+GGG | - | chr5_4:27508014-27508033 | None:intergenic | 20.0% |
| ! | AGAATTTATGAACTCAAATG+AGG | + | chr5_4:27505502-27505521 | Msa0846770:exon | 25.0% |
| ! | TACAATATTTACCATGTTGA+TGG | + | chr5_4:27505616-27505635 | Msa0846770:intron | 25.0% |
| ! | AATATTTACCATGTTAATGG+TGG | + | chr5_4:27505678-27505697 | Msa0846770:intron | 25.0% |
| ! | TGTTTATGATGTTTGAATGA+TGG | - | chr5_4:27505858-27505877 | None:intergenic | 25.0% |
| !!! | TCAACACCCTTTTATTTTAA+GGG | + | chr5_4:27505900-27505919 | Msa0846770:intron | 25.0% |
| ! | TCAAGACCCTTAAAATAAAA+GGG | - | chr5_4:27505909-27505928 | None:intergenic | 25.0% |
| ! | ATCAAGACCCTTAAAATAAA+AGG | - | chr5_4:27505910-27505929 | None:intergenic | 25.0% |
| !! | TAACATAATCCTATGGATTA+GGG | - | chr5_4:27505970-27505989 | None:intergenic | 25.0% |
| ! | GTAAAAAAATTCACAAAGGA+AGG | - | chr5_4:27506021-27506040 | None:intergenic | 25.0% |
| ! | AAGCATTTACCATAAAAATG+AGG | + | chr5_4:27506569-27506588 | Msa0846770:intron | 25.0% |
| ! | AAAAAATATTATGCCATGCA+TGG | + | chr5_4:27506615-27506634 | Msa0846770:intron | 25.0% |
| !! | CATGGTTATTGAAAAGTTTT+AGG | + | chr5_4:27506633-27506652 | Msa0846770:intron | 25.0% |
| ! | AATTATGCTTCATAAATGGA+GGG | - | chr5_4:27507040-27507059 | None:intergenic | 25.0% |
| ! | TAATTATGCTTCATAAATGG+AGG | - | chr5_4:27507041-27507060 | None:intergenic | 25.0% |
| ! | TGGTAATTATGCTTCATAAA+TGG | - | chr5_4:27507044-27507063 | None:intergenic | 25.0% |
| ! | TACTAATGAAAAACATTGTC+AGG | + | chr5_4:27507390-27507409 | Msa0846770:intron | 25.0% |
| !!! | ACATTATCTGATTTTAGCTA+AGG | - | chr5_4:27507575-27507594 | None:intergenic | 25.0% |
| ! | CTAAAATCAGATAATGTTCT+AGG | + | chr5_4:27507578-27507597 | Msa0846770:intron | 25.0% |
| ! | GGAATGATAAAAAAATAGAG+AGG | + | chr5_4:27507704-27507723 | Msa0846770:intron | 25.0% |
| ! | TATGTAAATCTAATTGCAGA+CGG | + | chr5_4:27507841-27507860 | Msa0846770:CDS | 25.0% |
| !!! | GCTTGTAACTTTTCATTTTT+TGG | - | chr5_4:27508015-27508034 | None:intergenic | 25.0% |
| ! | AATGAAAAGTTACAAGCAAA+AGG | + | chr5_4:27508018-27508037 | Msa0846770:CDS | 25.0% |
| ! | ATGAAAAGTTACAAGCAAAA+GGG | + | chr5_4:27508019-27508038 | Msa0846770:CDS | 25.0% |
| ! | TTGTGTAAACCAATTTAGTT+TGG | - | chr5_4:27508226-27508245 | None:intergenic | 25.0% |
| CATAAATTCTCCATTCTACT+GGG | - | chr5_4:27505492-27505511 | None:intergenic | 30.0% | |
| TCATAAATTCTCCATTCTAC+TGG | - | chr5_4:27505493-27505512 | None:intergenic | 30.0% | |
| TTTCTTCTCACACATCTTAT+TGG | + | chr5_4:27505540-27505559 | Msa0846770:intron | 30.0% | |
| ! | AATATTTACCATGTTGATGG+TGG | + | chr5_4:27505619-27505638 | Msa0846770:intron | 30.0% |
| ! | AGAAGACATGAGATTTTCAA+TGG | - | chr5_4:27505801-27505820 | None:intergenic | 30.0% |
| !! | CTTAAAATAAAAGGGTGTTG+AGG | - | chr5_4:27505901-27505920 | None:intergenic | 30.0% |
| !!! | CTCAACACCCTTTTATTTTA+AGG | + | chr5_4:27505899-27505918 | Msa0846770:intron | 30.0% |
| ! | TTTAAGGGTCTTGATTTTAC+AGG | + | chr5_4:27505915-27505934 | Msa0846770:intron | 30.0% |
| !! | AACATAATCCTATGGATTAG+GGG | - | chr5_4:27505969-27505988 | None:intergenic | 30.0% |
| GTAACATAATCCTATGGATT+AGG | - | chr5_4:27505971-27505990 | None:intergenic | 30.0% | |
| ! | AACATTACCTTTGAAAGACT+GGG | - | chr5_4:27506243-27506262 | None:intergenic | 30.0% |
| ! | AAACATTACCTTTGAAAGAC+TGG | - | chr5_4:27506244-27506263 | None:intergenic | 30.0% |
| AGTTGAAATGAGTACCTATT+GGG | + | chr5_4:27506419-27506438 | Msa0846770:intron | 30.0% | |
| ! | TCTTTTACTTCTCTCTTGTA+GGG | + | chr5_4:27506467-27506486 | Msa0846770:intron | 30.0% |
| ! | AACTTTTCAATAACCATGCA+TGG | - | chr5_4:27506631-27506650 | None:intergenic | 30.0% |
| ! | ATTTTCAGCAGAGAAGAAAA+AGG | + | chr5_4:27506765-27506784 | Msa0846770:intron | 30.0% |
| ! | TTTTCAGCAGAGAAGAAAAA+GGG | + | chr5_4:27506766-27506785 | Msa0846770:intron | 30.0% |
| ! | AAACAGCTTTCAAGTAAAAC+AGG | + | chr5_4:27506805-27506824 | Msa0846770:CDS | 30.0% |
| ! | TGATAACGACTACATAGAAA+TGG | + | chr5_4:27506831-27506850 | Msa0846770:CDS | 30.0% |
| ATTATGCTTCATAAATGGAG+GGG | - | chr5_4:27507039-27507058 | None:intergenic | 30.0% | |
| AGTTGTAGAAGAAAAGAAAC+CGG | + | chr5_4:27507154-27507173 | Msa0846770:CDS | 30.0% | |
| TCTAGTATGAACAATAAGTC+TGG | + | chr5_4:27507683-27507702 | Msa0846770:intron | 30.0% | |
| TGATAAAAAAATAGAGAGGC+CGG | + | chr5_4:27507708-27507727 | Msa0846770:intron | 30.0% | |
| !!! | GTTCACTCTGCAATTTTTTT+CGG | - | chr5_4:27507891-27507910 | None:intergenic | 30.0% |
| !!! | GTAACTTTTCATTTTTTGGG+TGG | - | chr5_4:27508011-27508030 | None:intergenic | 30.0% |
| ATAATTCTATCTGTAGCTCT+TGG | + | chr5_4:27508133-27508152 | Msa0846770:three_prime_UTR | 30.0% | |
| TAAGCTTCACCAAACTAAAT+TGG | + | chr5_4:27508214-27508233 | Msa0846770:three_prime_UTR | 30.0% | |
| TTCTCACACATCTTATTGGA+TGG | + | chr5_4:27505544-27505563 | Msa0846770:intron | 35.0% | |
| TCTTGTTACCACCATTAACA+TGG | - | chr5_4:27505689-27505708 | None:intergenic | 35.0% | |
| GTGAGATTCTGATCAAACAT+GGG | - | chr5_4:27505779-27505798 | None:intergenic | 35.0% | |
| ! | CTTGATTTTACAGGACCATA+TGG | + | chr5_4:27505924-27505943 | Msa0846770:intron | 35.0% |
| !! | ACATAATCCTATGGATTAGG+GGG | - | chr5_4:27505968-27505987 | None:intergenic | 35.0% |
| TTTGTTAGGGTACAACTTAC+TGG | + | chr5_4:27506155-27506174 | Msa0846770:intron | 35.0% | |
| GAGTTGAAATGAGTACCTAT+TGG | + | chr5_4:27506418-27506437 | Msa0846770:intron | 35.0% | |
| ! | CTCTTTTACTTCTCTCTTGT+AGG | + | chr5_4:27506466-27506485 | Msa0846770:intron | 35.0% |
| !!! | GTTTTAGGAATGAAGTCTAG+AGG | + | chr5_4:27506648-27506667 | Msa0846770:intron | 35.0% |
| AAGTCTAGAGGATTACACAT+TGG | + | chr5_4:27506660-27506679 | Msa0846770:intron | 35.0% | |
| ! | CACGTTTTTCTGAACTAACT+AGG | - | chr5_4:27506703-27506722 | None:intergenic | 35.0% |
| !!! | GTCAAGACATTTTTTACACG+AGG | - | chr5_4:27506744-27506763 | None:intergenic | 35.0% |
| AAATCTTCAAAGTCCCTTCT+CGG | + | chr5_4:27506973-27506992 | Msa0846770:CDS | 35.0% | |
| AGTATATCCAAGCGATTATC+AGG | + | chr5_4:27506997-27507016 | Msa0846770:CDS | 35.0% | |
| ATCTTTACCTGATAATCGCT+TGG | - | chr5_4:27507007-27507026 | None:intergenic | 35.0% | |
| ACTTTGTCTGCATCATGTTT+AGG | + | chr5_4:27507107-27507126 | Msa0846770:intron | 35.0% | |
| TGATCGACAAGATCAAACAA+TGG | + | chr5_4:27507216-27507235 | Msa0846770:CDS | 35.0% | |
| GATCGACAAGATCAAACAAT+GGG | + | chr5_4:27507217-27507236 | Msa0846770:CDS | 35.0% | |
| CAAACAATGGGCAGATAAAA+AGG | + | chr5_4:27507229-27507248 | Msa0846770:CDS | 35.0% | |
| ! | TACCTTTGTTTGATCTTGTC+GGG | - | chr5_4:27507266-27507285 | None:intergenic | 35.0% |
| ! | GTACCTTTGTTTGATCTTGT+CGG | - | chr5_4:27507267-27507286 | None:intergenic | 35.0% |
| !! | CAAGATCAAACAAAGGTACT+TGG | + | chr5_4:27507268-27507287 | Msa0846770:intron | 35.0% |
| ! | TCTCTCAGACACTCTTTTTA+AGG | + | chr5_4:27507497-27507516 | Msa0846770:intron | 35.0% |
| CATTTAGTCCTTCTTTAAGC+AGG | + | chr5_4:27507536-27507555 | Msa0846770:intron | 35.0% | |
| TTTCATGACCTGCTTAAAGA+AGG | - | chr5_4:27507547-27507566 | None:intergenic | 35.0% | |
| GATAAAAAAATAGAGAGGCC+GGG | + | chr5_4:27507709-27507728 | Msa0846770:intron | 35.0% | |
| ATTGCAGAGTGAACTTGAAA+AGG | + | chr5_4:27507795-27507814 | Msa0846770:intron | 35.0% | |
| TTGCAGAGTGAACTTGAAAA+GGG | + | chr5_4:27507796-27507815 | Msa0846770:intron | 35.0% | |
| AAAGGGAAGGTTGAAATCTT+TGG | + | chr5_4:27507813-27507832 | Msa0846770:CDS | 35.0% | |
| AATTGCAGAGTGAACTTGAA+CGG | + | chr5_4:27507794-27507813 | Msa0846770:intron | 35.0% | |
| AAAGTTACAAGCAAAAGGGA+AGG | + | chr5_4:27508023-27508042 | Msa0846770:CDS | 35.0% | |
| ATCTTTGCTTCTCAAACTCA+TGG | - | chr5_4:27508099-27508118 | None:intergenic | 35.0% | |
| ATAAAACCCTCCCAGTAGAA+TGG | + | chr5_4:27505479-27505498 | Msa0846770:five_prime_UTR | 40.0% | |
| AATTCTCCATTCTACTGGGA+GGG | - | chr5_4:27505488-27505507 | None:intergenic | 40.0% | |
| AAATTCTCCATTCTACTGGG+AGG | - | chr5_4:27505489-27505508 | None:intergenic | 40.0% | |
| TCTTGTTACCACCATCAACA+TGG | - | chr5_4:27505630-27505649 | None:intergenic | 40.0% | |
| GGTGAGATTCTGATCAAACA+TGG | - | chr5_4:27505780-27505799 | None:intergenic | 40.0% | |
| TGAACTGATCACCAATACGA+AGG | + | chr5_4:27505825-27505844 | Msa0846770:intron | 40.0% | |
| ATGGAGATTCTCCTTCGTAT+TGG | - | chr5_4:27505839-27505858 | None:intergenic | 40.0% | |
| TAGGGTACAACTTACTGGTA+CGG | + | chr5_4:27506160-27506179 | Msa0846770:intron | 40.0% | |
| GAAGAGAACAAAGCTGATCT+TGG | + | chr5_4:27506182-27506201 | Msa0846770:CDS | 40.0% | |
| ! | AAAGACTGGGTTTTCTGCAT+AGG | - | chr5_4:27506230-27506249 | None:intergenic | 40.0% |
| CAGAAAACCCAGTCTTTCAA+AGG | + | chr5_4:27506233-27506252 | Msa0846770:CDS | 40.0% | |
| AATGAGAGAAGTGAAGGTAG+GGG | - | chr5_4:27506279-27506298 | None:intergenic | 40.0% | |
| CAATGAGAGAAGTGAAGGTA+GGG | - | chr5_4:27506280-27506299 | None:intergenic | 40.0% | |
| CAGTGGGGTACATAATAAGT+TGG | - | chr5_4:27506396-27506415 | None:intergenic | 40.0% | |
| CAACTTATTATGTACCCCAC+TGG | + | chr5_4:27506394-27506413 | Msa0846770:intron | 40.0% | |
| ACTCATTTCAACTCTCCAGT+GGG | - | chr5_4:27506412-27506431 | None:intergenic | 40.0% | |
| TACTCATTTCAACTCTCCAG+TGG | - | chr5_4:27506413-27506432 | None:intergenic | 40.0% | |
| TGCAAGACTTCATTCCCAAT+AGG | - | chr5_4:27506436-27506455 | None:intergenic | 40.0% | |
| !!! | GCTGTTTTTGTAACCAACTC+TGG | - | chr5_4:27506792-27506811 | None:intergenic | 40.0% |
| GACTACATAGAAATGGTGCA+TGG | + | chr5_4:27506838-27506857 | Msa0846770:CDS | 40.0% | |
| CTTGGATATACTACCGAGAA+GGG | - | chr5_4:27506989-27507008 | None:intergenic | 40.0% | |
| AAAGAGAGACTGCAGATGAA+TGG | + | chr5_4:27507183-27507202 | Msa0846770:CDS | 40.0% | |
| AAGAGAGACTGCAGATGAAT+GGG | + | chr5_4:27507184-27507203 | Msa0846770:CDS | 40.0% | |
| !! | AAACAAAGGTACTTGGAAGC+AGG | + | chr5_4:27507275-27507294 | Msa0846770:intron | 40.0% |
| GATAGAGCTGATAGATTCCT+GGG | + | chr5_4:27507424-27507443 | Msa0846770:CDS | 40.0% | |
| !!! | CTCACACCACATTTTTTACC+CGG | - | chr5_4:27507730-27507749 | None:intergenic | 40.0% |
| AGAGTGAACTTGAAAAGGGA+AGG | + | chr5_4:27507800-27507819 | Msa0846770:intron | 40.0% | |
| ATTGCAGAGTGAACTTGAAC+GGG | + | chr5_4:27507897-27507916 | Msa0846770:CDS | 40.0% | |
| TCTTCAATTAACTCCGCACT+TGG | - | chr5_4:27508060-27508079 | None:intergenic | 40.0% | |
| !!! | ACTGGGAGGGTTTTATTCTC+AGG | - | chr5_4:27505475-27505494 | None:intergenic | 45.0% |
| !! | ATCCTATGGATTAGGGGGAA+GGG | - | chr5_4:27505963-27505982 | None:intergenic | 45.0% |
| !! | AATCCTATGGATTAGGGGGA+AGG | - | chr5_4:27505964-27505983 | None:intergenic | 45.0% |
| ! | AGGTATTTTCCGATCCCTTG+TGG | - | chr5_4:27506210-27506229 | None:intergenic | 45.0% |
| GAAGTGAAGGTAGGGGAAAA+AGG | - | chr5_4:27506272-27506291 | None:intergenic | 45.0% | |
| CCAATGAGAGAAGTGAAGGT+AGG | - | chr5_4:27506281-27506300 | None:intergenic | 45.0% | |
| CCTACCTTCACTTCTCTCAT+TGG | + | chr5_4:27506278-27506297 | Msa0846770:intron | 45.0% | |
| ACCTTCACTTCTCTCATTGG+TGG | + | chr5_4:27506281-27506300 | Msa0846770:intron | 45.0% | |
| CTCATTTCAACTCTCCAGTG+GGG | - | chr5_4:27506411-27506430 | None:intergenic | 45.0% | |
| AGAAGAAAAAGGGCCAGAGT+TGG | + | chr5_4:27506776-27506795 | Msa0846770:CDS | 45.0% | |
| ATTGGCCAAGGTCAAAAGCA+AGG | + | chr5_4:27506939-27506958 | Msa0846770:CDS | 45.0% | |
| GCTTGGATATACTACCGAGA+AGG | - | chr5_4:27506990-27507009 | None:intergenic | 45.0% | |
| CATCTGCAGTCTCTCTTTGA+GGG | - | chr5_4:27507181-27507200 | None:intergenic | 45.0% | |
| TCATCTGCAGTCTCTCTTTG+AGG | - | chr5_4:27507182-27507201 | None:intergenic | 45.0% | |
| AGCCCGACAAGATCAAACAA+AGG | + | chr5_4:27507261-27507280 | Msa0846770:CDS | 45.0% | |
| CGATAGAGCTGATAGATTCC+TGG | + | chr5_4:27507423-27507442 | Msa0846770:CDS | 45.0% | |
| ATTCCTGGGTAGACAAGAAG+AGG | + | chr5_4:27507438-27507457 | Msa0846770:CDS | 45.0% | |
| ! | TTCCTTCACTAGCTTGCGTT+TGG | - | chr5_4:27507471-27507490 | None:intergenic | 45.0% |
| TTGCAGAGTGAACTTGAACG+GGG | + | chr5_4:27507898-27507917 | Msa0846770:CDS | 45.0% | |
| ACGGGGAAGGAAGAAATCTT+TGG | + | chr5_4:27507915-27507934 | Msa0846770:CDS | 45.0% | |
| GGCAAGTACAATTCCAAGTG+CGG | + | chr5_4:27508044-27508063 | Msa0846770:CDS | 45.0% | |
| AGGACCATATGGTCCCTGAA+GGG | + | chr5_4:27505935-27505954 | Msa0846770:intron | 50.0% | |
| AACCCTTCCCCCTAATCCAT+AGG | + | chr5_4:27505958-27505977 | Msa0846770:intron | 50.0% | |
| !! | AAGCTGATCTTGGTGCCACA+AGG | + | chr5_4:27506192-27506211 | Msa0846770:CDS | 50.0% |
| !! | AGCTGATCTTGGTGCCACAA+GGG | + | chr5_4:27506193-27506212 | Msa0846770:CDS | 50.0% |
| !! | ATCTTGGTGCCACAAGGGAT+CGG | + | chr5_4:27506198-27506217 | Msa0846770:CDS | 50.0% |
| GCCACCAATGAGAGAAGTGA+AGG | - | chr5_4:27506285-27506304 | None:intergenic | 50.0% | |
| GTTCTCACTCTTCTGCTCAG+AGG | - | chr5_4:27506908-27506927 | None:intergenic | 50.0% | |
| TGAGCAGAAGAGTGAGAACC+CGG | + | chr5_4:27506909-27506928 | Msa0846770:CDS | 50.0% | |
| ! | GCTTTTGACCTTGGCCAATG+AGG | - | chr5_4:27506938-27506957 | None:intergenic | 50.0% |
| !! | GTCCACCTTGCTTTTGACCT+TGG | - | chr5_4:27506947-27506966 | None:intergenic | 50.0% |
| CTTCCTCTTCTTGTCTACCC+AGG | - | chr5_4:27507444-27507463 | None:intergenic | 50.0% | |
| AGCCAAACGCAAGCTAGTGA+AGG | + | chr5_4:27507466-27507485 | Msa0846770:CDS | 50.0% | |
| ACGCAAGCTAGTGAAGGAAC+AGG | + | chr5_4:27507472-27507491 | Msa0846770:CDS | 50.0% | |
| GAGAGGCCGGGTAAAAAATG+TGG | + | chr5_4:27507721-27507740 | Msa0846770:intron | 50.0% | |
| ! | TTTTCGGCTTTCCTCAGCCT+TGG | - | chr5_4:27507875-27507894 | None:intergenic | 50.0% |
| AGAGTGAACTTGAACGGGGA+AGG | + | chr5_4:27507902-27507921 | Msa0846770:CDS | 50.0% | |
| CAGGACCATATGGTCCCTGA+AGG | + | chr5_4:27505934-27505953 | Msa0846770:intron | 55.0% | |
| GGTTCCCTTCAGGGACCATA+TGG | - | chr5_4:27505942-27505961 | None:intergenic | 55.0% | |
| GGCCAAGGTCAAAAGCAAGG+TGG | + | chr5_4:27506942-27506961 | Msa0846770:CDS | 55.0% | |
| ! | GCAGTCTCTCTTTGAGGGTC+CGG | - | chr5_4:27507176-27507195 | None:intergenic | 55.0% |
| AGGGGGAAGGGTTCCCTTCA+GGG | - | chr5_4:27505951-27505970 | None:intergenic | 60.0% | |
| TAGGGGGAAGGGTTCCCTTC+AGG | - | chr5_4:27505952-27505971 | None:intergenic | 60.0% | |
| GCAGAAGAGTGAGAACCCGG+AGG | + | chr5_4:27506912-27506931 | Msa0846770:CDS | 60.0% | |
| TGAGAACCCGGAGGCCTCAT+TGG | + | chr5_4:27506921-27506940 | Msa0846770:CDS | 60.0% | |
| ACCTTGGCCAATGAGGCCTC+CGG | - | chr5_4:27506931-27506950 | None:intergenic | 60.0% | |
| TGCAGACAGAGCGAGAGCCA+AGG | + | chr5_4:27507975-27507994 | Msa0846770:CDS | 60.0% | |
| TGGGTGGCTTTCCACAGCCT+TGG | - | chr5_4:27507995-27508014 | None:intergenic | 60.0% | |
| CCTTGGCCAATGAGGCCTCC+GGG | - | chr5_4:27506930-27506949 | None:intergenic | 65.0% | |
| TGCAGACGGAGCGAGAGCCA+AGG | + | chr5_4:27507855-27507874 | Msa0846770:CDS | 65.0% | |
| CAGAGCGAGAGCCAAGGCTG+TGG | + | chr5_4:27507981-27508000 | Msa0846770:CDS | 65.0% | |
| CCCGGAGGCCTCATTGGCCA+AGG | + | chr5_4:27506927-27506946 | Msa0846770:CDS | 70.0% | |
| CGGAGCGAGAGCCAAGGCTG+AGG | + | chr5_4:27507861-27507880 | Msa0846770:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 27505466 | 27508264 | 27505466 | ID=Msa0846770;Name=Msa0846770 |
| chr5_4 | mRNA | 27505466 | 27508264 | 27505466 | ID=Msa0846770-mRNA-1;Parent=Msa0846770;Name=Msa0846770-mRNA-1;_AED=0.34;_eAED=0.34;_QI=53|0.8|0.83|1|0.8|0.66|6|163|292 |
| chr5_4 | exon | 27505466 | 27505523 | 27505466 | ID=Msa0846770-mRNA-1:exon:10576;Parent=Msa0846770-mRNA-1 |
| chr5_4 | exon | 27506163 | 27506254 | 27506163 | ID=Msa0846770-mRNA-1:exon:10577;Parent=Msa0846770-mRNA-1 |
| chr5_4 | exon | 27506773 | 27507018 | 27506773 | ID=Msa0846770-mRNA-1:exon:10578;Parent=Msa0846770-mRNA-1 |
| chr5_4 | exon | 27507129 | 27507282 | 27507129 | ID=Msa0846770-mRNA-1:exon:10579;Parent=Msa0846770-mRNA-1 |
| chr5_4 | exon | 27507412 | 27507493 | 27507412 | ID=Msa0846770-mRNA-1:exon:10580;Parent=Msa0846770-mRNA-1 |
| chr5_4 | exon | 27507802 | 27508264 | 27507802 | ID=Msa0846770-mRNA-1:exon:10581;Parent=Msa0846770-mRNA-1 |
| chr5_4 | five_prime_UTR | 27505466 | 27505518 | 27505466 | ID=Msa0846770-mRNA-1:five_prime_utr;Parent=Msa0846770-mRNA-1 |
| chr5_4 | CDS | 27505519 | 27505523 | 27505519 | ID=Msa0846770-mRNA-1:cds;Parent=Msa0846770-mRNA-1 |
| chr5_4 | CDS | 27506163 | 27506254 | 27506163 | ID=Msa0846770-mRNA-1:cds;Parent=Msa0846770-mRNA-1 |
| chr5_4 | CDS | 27506773 | 27507018 | 27506773 | ID=Msa0846770-mRNA-1:cds;Parent=Msa0846770-mRNA-1 |
| chr5_4 | CDS | 27507129 | 27507282 | 27507129 | ID=Msa0846770-mRNA-1:cds;Parent=Msa0846770-mRNA-1 |
| chr5_4 | CDS | 27507412 | 27507493 | 27507412 | ID=Msa0846770-mRNA-1:cds;Parent=Msa0846770-mRNA-1 |
| chr5_4 | CDS | 27507802 | 27508101 | 27507802 | ID=Msa0846770-mRNA-1:cds;Parent=Msa0846770-mRNA-1 |
| chr5_4 | three_prime_UTR | 27508102 | 27508264 | 27508102 | ID=Msa0846770-mRNA-1:three_prime_utr;Parent=Msa0846770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
