Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121180 | XP_003624261.1 | 98.601 | 143 | 2 | 0 | 1 | 143 | 1 | 143 | 6.84e-100 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121180 | sp|Q54CU7|TPC2L_DICDI | 48.571 | 140 | 65 | 3 | 2 | 137 | 4 | 140 | 5.13e-45 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121180 | G7KTB1 | 98.601 | 143 | 2 | 0 | 1 | 143 | 1 | 143 | 3.27e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1094790 | Msa1121180 | 0.809284 | 2.042068e-50 | -8.615850e-47 |
| Msa1094800 | Msa1121180 | 0.804740 | 1.868430e-49 | -8.615850e-47 |
| Msa1121090 | Msa1121180 | 0.830388 | 3.020844e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121180 | MtrunA17_Chr7g0250071 | 98.601 | 143 | 2 | 0 | 1 | 143 | 1 | 143 | 6.29e-104 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121180 | AT2G20930.1 | 87.143 | 140 | 18 | 0 | 1 | 140 | 1 | 140 | 1.04e-89 | 257 |
Find 48 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTGGCACTGTTGCTATT+TGG | 0.216872 | 7_3:+71209265 | None:intergenic |
| GAATTGTCCCCAATTAAAAT+AGG | 0.264869 | 7_3:-71209344 | Msa1121180:five_prime_UTR |
| TAGATCTTAGTTTCTTCTAT+TGG | 0.322208 | 7_3:+71209249 | None:intergenic |
| GTATGTGTTTCAACATAAAT+TGG | 0.324399 | 7_3:-71205963 | Msa1121180:three_prime_UTR |
| AAAGGTAAATAAATTCTATA+CGG | 0.334859 | 7_3:+71205867 | None:intergenic |
| AGCTACTAAGAAGTAGAAAA+AGG | 0.348208 | 7_3:+71205989 | None:intergenic |
| TACAAAGGTGAAATTTATCT+TGG | 0.368869 | 7_3:-71208137 | Msa1121180:CDS |
| ACAAAAGTTTGATTCAGCTT+TGG | 0.378401 | 7_3:-71209366 | Msa1121180:five_prime_UTR |
| GTGAACAATCCTAAGAAATC+TGG | 0.390754 | 7_3:-71208338 | Msa1121180:CDS |
| AGCACAATCGTCAAGTCATT+TGG | 0.391002 | 7_3:-71206081 | Msa1121180:CDS |
| AGCATGGGTCCAGATTTCTT+AGG | 0.394461 | 7_3:+71208329 | None:intergenic |
| TATCTTGGTGACCACGGATC+TGG | 0.405812 | 7_3:-71208122 | Msa1121180:CDS |
| GCTGCATGAAAATCTAATAC+TGG | 0.421708 | 7_3:-71206048 | Msa1121180:exon |
| TTCAAATCCATTCCATGTGC+CGG | 0.437254 | 7_3:-71206142 | Msa1121180:CDS |
| ACCTTATACCTTACGTCAAA+AGG | 0.443055 | 7_3:+71205849 | None:intergenic |
| CGTCGCCGTCGTTGGTCACC+AGG | 0.445406 | 7_3:-71208998 | Msa1121180:intron |
| TTTCAACATAAATTGGTTGA+AGG | 0.465166 | 7_3:-71205956 | Msa1121180:three_prime_UTR |
| ATCTTACTCGCTGATTCAAA+AGG | 0.465559 | 7_3:+71209296 | None:intergenic |
| GCTCCCAGTTCAAGTGCATA+TGG | 0.469871 | 7_3:-71205903 | Msa1121180:three_prime_UTR |
| ATCGTCTGCGTCGCCGTCGT+TGG | 0.474649 | 7_3:-71209006 | Msa1121180:CDS |
| GTTCCTAACACGCACGGCAC+GGG | 0.482292 | 7_3:-71209224 | Msa1121180:five_prime_UTR |
| GGTACCATATGCACTTGAAC+TGG | 0.483354 | 7_3:+71205899 | None:intergenic |
| TCAAATCCATTCCATGTGCC+GGG | 0.503373 | 7_3:-71206141 | Msa1121180:CDS |
| AAGGTAAATAAATTCTATAC+GGG | 0.531898 | 7_3:+71205868 | None:intergenic |
| TTCAATCTATTCAGTGCGTG+CGG | 0.545776 | 7_3:-71209076 | Msa1121180:intron |
| TCAATCTATTCAGTGCGTGC+GGG | 0.552720 | 7_3:-71209075 | Msa1121180:intron |
| CGACGACATCGAGCGAGCAA+TGG | 0.556661 | 7_3:+71208793 | None:intergenic |
| CTTCACCGGCGAAGTGTCGA+GGG | 0.562176 | 7_3:+71209032 | None:intergenic |
| TCTTCACCGGCGAAGTGTCG+AGG | 0.566760 | 7_3:+71209031 | None:intergenic |
| TGGATATCTGACTAATACAA+AGG | 0.568247 | 7_3:-71208152 | Msa1121180:CDS |
| GCGAGCAATGGACGATGTGG+TGG | 0.569676 | 7_3:+71208805 | None:intergenic |
| AGTTCCTAACACGCACGGCA+CGG | 0.573416 | 7_3:-71209225 | Msa1121180:five_prime_UTR |
| TTTATGCTATATATCATCAA+AGG | 0.575145 | 7_3:+71206013 | None:intergenic |
| GTAGACCCTCGACACTTCGC+CGG | 0.597086 | 7_3:-71209037 | Msa1121180:five_prime_UTR |
| CTCGATGTCGTCGACGAACG+AGG | 0.599019 | 7_3:-71208783 | Msa1121180:intron |
| TTCCTAACACGCACGGCACG+GGG | 0.599273 | 7_3:-71209223 | Msa1121180:five_prime_UTR |
| GTGAAACTCTGTATATACAA+TGG | 0.599535 | 7_3:+71208852 | None:intergenic |
| CTTGAGAGCATCATCAGCCT+CGG | 0.600727 | 7_3:+71208830 | None:intergenic |
| ACGCAGACGATCATCTTCAC+CGG | 0.606742 | 7_3:+71209018 | None:intergenic |
| GAAATTTATCTTGGTGACCA+CGG | 0.623105 | 7_3:-71208128 | Msa1121180:CDS |
| AATTCTATACGGGTGAAGTG+TGG | 0.632848 | 7_3:+71205878 | None:intergenic |
| GTACCATATGCACTTGAACT+GGG | 0.635696 | 7_3:+71205900 | None:intergenic |
| ATCTTTAACATCCAGATCCG+TGG | 0.641072 | 7_3:+71208111 | None:intergenic |
| CGAGCGAGCAATGGACGATG+TGG | 0.648936 | 7_3:+71208802 | None:intergenic |
| TCTAGAGTTCCTAACACGCA+CGG | 0.662128 | 7_3:-71209230 | Msa1121180:five_prime_UTR |
| ACTCACCTGGTGACCAACGA+CGG | 0.674353 | 7_3:+71208993 | None:intergenic |
| CGAAGTGTCGAGGGTCTACG+TGG | 0.677566 | 7_3:+71209041 | None:intergenic |
| GTATATACAGAGTTTCACCG+AGG | 0.795168 | 7_3:-71208847 | Msa1121180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCATGATTATTTATTAT+TGG | - | chr7_3:71207239-71207258 | Msa1121180:intron | 10.0% |
| !! | AATCATGATTATTTATTATT+GGG | - | chr7_3:71207240-71207259 | Msa1121180:intron | 10.0% |
| !! | AGTAAAAGAATAAAATTAAA+GGG | + | chr7_3:71208192-71208211 | None:intergenic | 10.0% |
| !! | TAGTAAAAGAATAAAATTAA+AGG | + | chr7_3:71208193-71208212 | None:intergenic | 10.0% |
| !! | TTAAAATTCAATTAAAAGAA+CGG | + | chr7_3:71208740-71208759 | None:intergenic | 10.0% |
| !!! | TTCTTTTAATTGAATTTTAA+TGG | - | chr7_3:71208740-71208759 | Msa1121180:intron | 10.0% |
| !!! | TCTTTTAATTGAATTTTAAT+GGG | - | chr7_3:71208741-71208760 | Msa1121180:intron | 10.0% |
| !! | TAAAAAGAAATTATATAACA+TGG | - | chr7_3:71209358-71209377 | Msa1121180:five_prime_UTR | 10.0% |
| !!! | TGTTTTATCTATTAATTTGT+TGG | - | chr7_3:71206412-71206431 | Msa1121180:intron | 15.0% |
| !!! | GTTTTATCTATTAATTTGTT+GGG | - | chr7_3:71206413-71206432 | Msa1121180:intron | 15.0% |
| !!! | AAGTTTCAATATTTTTTTGT+TGG | - | chr7_3:71206477-71206496 | Msa1121180:intron | 15.0% |
| !!! | AATATTTTTTTGTTGGATTT+GGG | - | chr7_3:71206484-71206503 | Msa1121180:intron | 15.0% |
| !!! | ATTTTTCTCTAAATTAAGAA+TGG | + | chr7_3:71206664-71206683 | None:intergenic | 15.0% |
| !! | AAAGGTAAATAAATTCTATA+CGG | + | chr7_3:71209218-71209237 | None:intergenic | 15.0% |
| !! | TTATGTTTATTTGGAGATTT+AGG | - | chr7_3:71206383-71206402 | Msa1121180:intron | 20.0% |
| !!! | CAATATTTTTTTGTTGGATT+TGG | - | chr7_3:71206483-71206502 | Msa1121180:intron | 20.0% |
| !!! | ATTGAATTATGTCATTTTCT+CGG | + | chr7_3:71206587-71206606 | None:intergenic | 20.0% |
| !! | AATTCCAGAAAATTATACTA+CGG | + | chr7_3:71207049-71207068 | None:intergenic | 20.0% |
| !!! | AAGCATGTATTTTGTATTTA+TGG | - | chr7_3:71207162-71207181 | Msa1121180:intron | 20.0% |
| !! | TACAAAATATTGTGAAATAG+TGG | - | chr7_3:71207543-71207562 | Msa1121180:intron | 20.0% |
| !!! | TATGATTTTTGAGTGAAATT+GGG | - | chr7_3:71207663-71207682 | Msa1121180:intron | 20.0% |
| !! | ACTATTTAACCAATAATCTT+GGG | + | chr7_3:71207855-71207874 | None:intergenic | 20.0% |
| !! | AACTATTTAACCAATAATCT+TGG | + | chr7_3:71207856-71207875 | None:intergenic | 20.0% |
| !! | GATGTTAATAGAAATACAAA+GGG | - | chr7_3:71208000-71208019 | Msa1121180:intron | 20.0% |
| !! | AATTAAAGGGAAAAAGATAT+AGG | + | chr7_3:71208179-71208198 | None:intergenic | 20.0% |
| !!! | TATATAACTCTTTTTTTCAC+AGG | - | chr7_3:71208441-71208460 | Msa1121180:intron | 20.0% |
| !!! | ATTTTAATGGGTAATACTAT+TGG | - | chr7_3:71208753-71208772 | Msa1121180:intron | 20.0% |
| !! | TTTATGCTATATATCATCAA+AGG | + | chr7_3:71209072-71209091 | None:intergenic | 20.0% |
| !! | AAGGTAAATAAATTCTATAC+GGG | + | chr7_3:71209217-71209236 | None:intergenic | 20.0% |
| ! | TAGATCTTAGTTTCTTCTAT+TGG | + | chr7_3:71205836-71205855 | None:intergenic | 25.0% |
| ! | TGAAACTTTCTCTAAACTAA+GGG | + | chr7_3:71206465-71206484 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCTCTAAACTA+AGG | + | chr7_3:71206466-71206485 | None:intergenic | 25.0% |
| !!! | GGAATTATTTTTTTACTGCT+GGG | - | chr7_3:71206523-71206542 | Msa1121180:intron | 25.0% |
| !!! | TTATATTGTTTGCCTTGTTT+TGG | - | chr7_3:71206690-71206709 | Msa1121180:intron | 25.0% |
| !!! | TATATTGTTTGCCTTGTTTT+GGG | - | chr7_3:71206691-71206710 | Msa1121180:intron | 25.0% |
| !! | CACACTTTGTAATTTTCAAT+TGG | + | chr7_3:71206807-71206826 | None:intergenic | 25.0% |
| ! | TATAATCCAACAATGAAAAG+TGG | - | chr7_3:71206868-71206887 | Msa1121180:intron | 25.0% |
| ! | ATAATCCAACAATGAAAAGT+GGG | - | chr7_3:71206869-71206888 | Msa1121180:intron | 25.0% |
| ! | TACAAAGGTGAAATTTATCT+TGG | - | chr7_3:71206945-71206964 | Msa1121180:intron | 25.0% |
| !! | ATTTCCGTAGTATAATTTTC+TGG | - | chr7_3:71207042-71207061 | Msa1121180:intron | 25.0% |
| !! | CATGTATTTTGTATTTATGG+TGG | - | chr7_3:71207165-71207184 | Msa1121180:intron | 25.0% |
| ! | AGTTGTATAATTAGTTAGAC+AGG | - | chr7_3:71207386-71207405 | Msa1121180:intron | 25.0% |
| ! | GTTGTATAATTAGTTAGACA+GGG | - | chr7_3:71207387-71207406 | Msa1121180:intron | 25.0% |
| ! | TTAATGCTACAAAAACTAGA+AGG | - | chr7_3:71207413-71207432 | Msa1121180:intron | 25.0% |
| ! | TAATGCTACAAAAACTAGAA+GGG | - | chr7_3:71207414-71207433 | Msa1121180:intron | 25.0% |
| ! | TTGTACTAAATAGTGTATCA+CGG | + | chr7_3:71207528-71207547 | None:intergenic | 25.0% |
| !!! | CTATGATTTTTGAGTGAAAT+TGG | - | chr7_3:71207662-71207681 | Msa1121180:intron | 25.0% |
| ! | CAAAAGAAATACATGACAAT+AGG | + | chr7_3:71207937-71207956 | None:intergenic | 25.0% |
| ! | CGATGTTAATAGAAATACAA+AGG | - | chr7_3:71207999-71208018 | Msa1121180:intron | 25.0% |
| !! | ATCAATTTGTATTTCTGAGA+GGG | + | chr7_3:71208358-71208377 | None:intergenic | 25.0% |
| !! | CAGAAATACAAATTGATGAT+AGG | - | chr7_3:71208361-71208380 | Msa1121180:intron | 25.0% |
| !! | TTTTGTGAAAGAAAACATGT+AGG | + | chr7_3:71208654-71208673 | None:intergenic | 25.0% |
| ! | CAAACAGTACAATATTTCAT+AGG | + | chr7_3:71208847-71208866 | None:intergenic | 25.0% |
| ! | CTATGAAATATTGTACTGTT+TGG | - | chr7_3:71208845-71208864 | Msa1121180:CDS | 25.0% |
| !!! | CAAGTCATTTGGTTTTAATT+CGG | - | chr7_3:71209012-71209031 | Msa1121180:CDS | 25.0% |
| ! | GTATGTGTTTCAACATAAAT+TGG | - | chr7_3:71209119-71209138 | Msa1121180:intron | 25.0% |
| ! | TTTCAACATAAATTGGTTGA+AGG | - | chr7_3:71209126-71209145 | Msa1121180:intron | 25.0% |
| !! | TTTATTTACCTTTTGACGTA+AGG | - | chr7_3:71209225-71209244 | Msa1121180:five_prime_UTR | 25.0% |
| !! | TTCATGAAATTTTGTGTGTT+TGG | - | chr7_3:71209256-71209275 | Msa1121180:five_prime_UTR | 25.0% |
| !! | TCATGAAATTTTGTGTGTTT+GGG | - | chr7_3:71209257-71209276 | Msa1121180:five_prime_UTR | 25.0% |
| ACAAAAGTTTGATTCAGCTT+TGG | - | chr7_3:71205716-71205735 | Msa1121180:three_prime_UTR | 30.0% | |
| GAATTGTCCCCAATTAAAAT+AGG | - | chr7_3:71205738-71205757 | Msa1121180:three_prime_UTR | 30.0% | |
| !!! | TGCAGATCCTATTTTAATTG+GGG | + | chr7_3:71205748-71205767 | None:intergenic | 30.0% |
| !!! | CTGCAGATCCTATTTTAATT+GGG | + | chr7_3:71205749-71205768 | None:intergenic | 30.0% |
| !!! | ACTGCAGATCCTATTTTAAT+TGG | + | chr7_3:71205750-71205769 | None:intergenic | 30.0% |
| AGAGATGGTATATATTACGA+AGG | + | chr7_3:71205918-71205937 | None:intergenic | 30.0% | |
| GTGAAACTCTGTATATACAA+TGG | + | chr7_3:71206233-71206252 | None:intergenic | 30.0% | |
| !!! | TTTGGGATTTTTTTGTCTTG+TGG | - | chr7_3:71206501-71206520 | Msa1121180:intron | 30.0% |
| !!! | TTGGGATTTTTTTGTCTTGT+GGG | - | chr7_3:71206502-71206521 | Msa1121180:intron | 30.0% |
| !!! | GGGAATTATTTTTTTACTGC+TGG | - | chr7_3:71206522-71206541 | Msa1121180:intron | 30.0% |
| !!! | ATATTGTTTGCCTTGTTTTG+GGG | - | chr7_3:71206692-71206711 | Msa1121180:intron | 30.0% |
| ! | TCTGATGAAATGTGTTTTCA+TGG | - | chr7_3:71206719-71206738 | Msa1121180:intron | 30.0% |
| TGGATATCTGACTAATACAA+AGG | - | chr7_3:71206930-71206949 | Msa1121180:intron | 30.0% | |
| ! | TGAGTATCAATACAAGTTGA+TGG | - | chr7_3:71207010-71207029 | Msa1121180:intron | 30.0% |
| TTCAAGAAGACAAGGAAATT+GGG | + | chr7_3:71207086-71207105 | None:intergenic | 30.0% | |
| ATTCAAGAAGACAAGGAAAT+TGG | + | chr7_3:71207087-71207106 | None:intergenic | 30.0% | |
| AATTTCCTTGTCTTCTTGAA+TGG | - | chr7_3:71207086-71207105 | Msa1121180:intron | 30.0% | |
| ATTTGCCATTCTTACATTGA+AGG | + | chr7_3:71207352-71207371 | None:intergenic | 30.0% | |
| TGGACATCATTGAATAATAG+TGG | - | chr7_3:71207634-71207653 | Msa1121180:intron | 30.0% | |
| GGACATCATTGAATAATAGT+GGG | - | chr7_3:71207635-71207654 | Msa1121180:intron | 30.0% | |
| CAAGAATGTACAATGGAAAT+GGG | + | chr7_3:71207732-71207751 | None:intergenic | 30.0% | |
| CTTTAATCACATTCGTTAGA+AGG | - | chr7_3:71207761-71207780 | Msa1121180:intron | 30.0% | |
| TGATGGAAATAGATCAGATT+TGG | + | chr7_3:71207817-71207836 | None:intergenic | 30.0% | |
| TTTAACCAATAATCTTGGGA+TGG | + | chr7_3:71207851-71207870 | None:intergenic | 30.0% | |
| GTGTAGAATCTGTATTTGTT+AGG | - | chr7_3:71207956-71207975 | Msa1121180:intron | 30.0% | |
| ATATTAGGGATCTGAATGTA+AGG | - | chr7_3:71208066-71208085 | Msa1121180:intron | 30.0% | |
| TATTAGGGATCTGAATGTAA+GGG | - | chr7_3:71208067-71208086 | Msa1121180:intron | 30.0% | |
| TTGAGAGGTAAGGAAAATTT+GGG | - | chr7_3:71208129-71208148 | Msa1121180:CDS | 30.0% | |
| ATGTTAGAATTCTTGCGATT+AGG | + | chr7_3:71208216-71208235 | None:intergenic | 30.0% | |
| ATTCTAACATGACCACAATT+TGG | - | chr7_3:71208226-71208245 | Msa1121180:intron | 30.0% | |
| TATACAAAGGTTCCAAATTG+TGG | + | chr7_3:71208241-71208260 | None:intergenic | 30.0% | |
| TATGATGTGAAAACACAAGA+GGG | + | chr7_3:71208328-71208347 | None:intergenic | 30.0% | |
| TTATGATGTGAAAACACAAG+AGG | + | chr7_3:71208329-71208348 | None:intergenic | 30.0% | |
| ! | CATCAATTTGTATTTCTGAG+AGG | + | chr7_3:71208359-71208378 | None:intergenic | 30.0% |
| TTGTTTCACTTTGTTCTCTT+TGG | - | chr7_3:71208412-71208431 | Msa1121180:intron | 30.0% | |
| TGTTTCACTTTGTTCTCTTT+GGG | - | chr7_3:71208413-71208432 | Msa1121180:intron | 30.0% | |
| ! | AAAGCATCAATTTCATCACT+CGG | + | chr7_3:71208597-71208616 | None:intergenic | 30.0% |
| GTATCAAAACATAGTGCTAT+TGG | + | chr7_3:71208718-71208737 | None:intergenic | 30.0% | |
| TATACAGAGTTATGTGACAA+AGG | + | chr7_3:71208821-71208840 | None:intergenic | 30.0% | |
| ! | CTTCTGATATACAGTTTTTC+AGG | - | chr7_3:71208888-71208907 | Msa1121180:intron | 30.0% |
| ! | CTAGATGTTATCTTTTTACC+CGG | + | chr7_3:71208962-71208981 | None:intergenic | 30.0% |
| AGCTACTAAGAAGTAGAAAA+AGG | + | chr7_3:71209096-71209115 | None:intergenic | 30.0% | |
| ! | GCTGAATCAAACTTTTGTGA+TGG | + | chr7_3:71205714-71205733 | None:intergenic | 35.0% |
| !! | ATCTTACTCGCTGATTCAAA+AGG | + | chr7_3:71205789-71205808 | None:intergenic | 35.0% |
| TAAGAGTGAACAGGAAAATG+CGG | + | chr7_3:71205943-71205962 | None:intergenic | 35.0% | |
| ACTATACAGTAAGAGTGAAC+AGG | + | chr7_3:71205952-71205971 | None:intergenic | 35.0% | |
| AATAGATTGAACGAAGGGAA+AGG | + | chr7_3:71205997-71206016 | None:intergenic | 35.0% | |
| CACTGAATAGATTGAACGAA+GGG | + | chr7_3:71206002-71206021 | None:intergenic | 35.0% | |
| AAAATGACGAAGTGGAAAAC+GGG | + | chr7_3:71206127-71206146 | None:intergenic | 35.0% | |
| GAAAATGACGAAGTGGAAAA+CGG | + | chr7_3:71206128-71206147 | None:intergenic | 35.0% | |
| ! | CACAAAGTTCAAGTTCAGAT+CGG | + | chr7_3:71206155-71206174 | None:intergenic | 35.0% |
| !!! | TATTGTTTGCCTTGTTTTGG+GGG | - | chr7_3:71206693-71206712 | Msa1121180:intron | 35.0% |
| GTGAACAATCCTAAGAAATC+TGG | - | chr7_3:71206744-71206763 | Msa1121180:intron | 35.0% | |
| AAAAACGTCTCATTCAGCAT+GGG | + | chr7_3:71206771-71206790 | None:intergenic | 35.0% | |
| ! | ATGCTGAATGAGACGTTTTT+GGG | - | chr7_3:71206771-71206790 | Msa1121180:intron | 35.0% |
| !! | AATAGCCCACTTTTCATTGT+TGG | + | chr7_3:71206877-71206896 | None:intergenic | 35.0% |
| TGTGATGTGCTTTACAGTTA+TGG | - | chr7_3:71206910-71206929 | Msa1121180:intron | 35.0% | |
| ! | GAAATTTATCTTGGTGACCA+CGG | - | chr7_3:71206954-71206973 | Msa1121180:intron | 35.0% |
| AACTTCCATTCAAGAAGACA+AGG | + | chr7_3:71207094-71207113 | None:intergenic | 35.0% | |
| CTTGAATGGAAGTTTATGAC+TGG | - | chr7_3:71207100-71207119 | Msa1121180:intron | 35.0% | |
| TACAGATTAAGCTCAACACA+CGG | + | chr7_3:71207203-71207222 | None:intergenic | 35.0% | |
| AGTAAACACAACCACACATT+AGG | + | chr7_3:71207315-71207334 | None:intergenic | 35.0% | |
| GAAGACCTTCAATGTAAGAA+TGG | - | chr7_3:71207344-71207363 | Msa1121180:intron | 35.0% | |
| CATTGTTAAATAGCCCATAG+CGG | - | chr7_3:71207450-71207469 | Msa1121180:intron | 35.0% | |
| TTGCAGATTGCTGAAAATAG+TGG | + | chr7_3:71207614-71207633 | None:intergenic | 35.0% | |
| ! | CTATTTTCAGCAATCTGCAA+TGG | - | chr7_3:71207614-71207633 | Msa1121180:intron | 35.0% |
| ! | CATCATTGAATAATAGTGGG+AGG | - | chr7_3:71207638-71207657 | Msa1121180:intron | 35.0% |
| CCAAGAATGTACAATGGAAA+TGG | + | chr7_3:71207733-71207752 | None:intergenic | 35.0% | |
| CCATTTCCATTGTACATTCT+TGG | - | chr7_3:71207730-71207749 | Msa1121180:intron | 35.0% | |
| TGTATCCATCCCAAGATTAT+TGG | - | chr7_3:71207843-71207862 | Msa1121180:intron | 35.0% | |
| GAAATACAAAGGGAAGAAAG+CGG | - | chr7_3:71208010-71208029 | Msa1121180:intron | 35.0% | |
| TAGAATGTAAAGTGGGAGAA+GGG | - | chr7_3:71208102-71208121 | Msa1121180:CDS | 35.0% | |
| GTTGAGAGGTAAGGAAAATT+TGG | - | chr7_3:71208128-71208147 | Msa1121180:CDS | 35.0% | |
| TGAGAGGTAAGGAAAATTTG+GGG | - | chr7_3:71208130-71208149 | Msa1121180:CDS | 35.0% | |
| AGGAAAATTTGGGGAAAGTT+TGG | - | chr7_3:71208139-71208158 | Msa1121180:CDS | 35.0% | |
| GGAAAATTTGGGGAAAGTTT+GGG | - | chr7_3:71208140-71208159 | Msa1121180:CDS | 35.0% | |
| GCATACTGGCATATATACAA+AGG | + | chr7_3:71208254-71208273 | None:intergenic | 35.0% | |
| ! | TCTCACTCAAAAAAGCATAC+TGG | + | chr7_3:71208268-71208287 | None:intergenic | 35.0% |
| ! | AAACTGCATTCTTTGGTGTA+TGG | - | chr7_3:71208287-71208306 | Msa1121180:CDS | 35.0% |
| GAACAAAGTGAAACAAAGCA+AGG | + | chr7_3:71208408-71208427 | None:intergenic | 35.0% | |
| GTTTCACTTTGTTCTCTTTG+GGG | - | chr7_3:71208414-71208433 | Msa1121180:intron | 35.0% | |
| AAGCATCAATTTCATCACTC+GGG | + | chr7_3:71208596-71208615 | None:intergenic | 35.0% | |
| !! | GCTTTTGTTTCTCACATTAG+TGG | - | chr7_3:71208612-71208631 | Msa1121180:intron | 35.0% |
| AAACATGTAGGAGTTCTCAA+TGG | + | chr7_3:71208642-71208661 | None:intergenic | 35.0% | |
| CTGTATATCAGAAGTTAGCA+TGG | + | chr7_3:71208882-71208901 | None:intergenic | 35.0% | |
| GCTGCATGAAAATCTAATAC+TGG | - | chr7_3:71209034-71209053 | Msa1121180:five_prime_UTR | 35.0% | |
| ACTGGGAGCAACAAAAAATA+AGG | + | chr7_3:71209168-71209187 | None:intergenic | 35.0% | |
| ! | ACCTTTTGACGTAAGGTATA+AGG | - | chr7_3:71209232-71209251 | Msa1121180:five_prime_UTR | 35.0% |
| ACCTTATACCTTACGTCAAA+AGG | + | chr7_3:71209236-71209255 | None:intergenic | 35.0% | |
| ! | CTATTGGCACTGTTGCTATT+TGG | + | chr7_3:71205820-71205839 | None:intergenic | 40.0% |
| GCACTGAATAGATTGAACGA+AGG | + | chr7_3:71206003-71206022 | None:intergenic | 40.0% | |
| TTCAATCTATTCAGTGCGTG+CGG | - | chr7_3:71206006-71206025 | Msa1121180:three_prime_UTR | 40.0% | |
| ! | ATGGATTGTTCTGCAGCAAT+CGG | + | chr7_3:71206214-71206233 | None:intergenic | 40.0% |
| GTATATACAGAGTTTCACCG+AGG | - | chr7_3:71206235-71206254 | Msa1121180:intron | 40.0% | |
| !! | AATTTGTTGGGTGCTGCAAA+TGG | - | chr7_3:71206425-71206444 | Msa1121180:intron | 40.0% |
| AAAGACTTGTCACACGAACA+TGG | + | chr7_3:71206629-71206648 | None:intergenic | 40.0% | |
| !!! | ATTGTTTGCCTTGTTTTGGG+GGG | - | chr7_3:71206694-71206713 | Msa1121180:intron | 40.0% |
| CAAAAACGTCTCATTCAGCA+TGG | + | chr7_3:71206772-71206791 | None:intergenic | 40.0% | |
| ! | CATGCTGAATGAGACGTTTT+TGG | - | chr7_3:71206770-71206789 | Msa1121180:intron | 40.0% |
| ATCTTTAACATCCAGATCCG+TGG | + | chr7_3:71206974-71206993 | None:intergenic | 40.0% | |
| !! | CATCTGTTTGGTTTGACGAT+AGG | + | chr7_3:71207282-71207301 | None:intergenic | 40.0% |
| ATCGTCAAACCAAACAGATG+TGG | - | chr7_3:71207282-71207301 | Msa1121180:intron | 40.0% | |
| GGATTTACTCCACATCTGTT+TGG | + | chr7_3:71207294-71207313 | None:intergenic | 40.0% | |
| GTGGAGTAAATCCTAATGTG+TGG | - | chr7_3:71207301-71207320 | Msa1121180:intron | 40.0% | |
| ! | ACGATAGTGCTATTGCATAG+CGG | - | chr7_3:71207479-71207498 | Msa1121180:intron | 40.0% |
| TTGTGAAATAGTGGCTATCG+CGG | - | chr7_3:71207552-71207571 | Msa1121180:intron | 40.0% | |
| TGCAGGTCTCTTAAATACCT+AGG | - | chr7_3:71207692-71207711 | Msa1121180:intron | 40.0% | |
| GCAGGTCTCTTAAATACCTA+GGG | - | chr7_3:71207693-71207712 | Msa1121180:intron | 40.0% | |
| CGAATGCCAAGAATGTACAA+TGG | + | chr7_3:71207739-71207758 | None:intergenic | 40.0% | |
| CATTAACTGCTCATGCTAGA+AGG | + | chr7_3:71207887-71207906 | None:intergenic | 40.0% | |
| CTTCTAGCATGAGCAGTTAA+TGG | - | chr7_3:71207885-71207904 | Msa1121180:intron | 40.0% | |
| TGGTGACACGATGTTAACAT+TGG | - | chr7_3:71207905-71207924 | Msa1121180:intron | 40.0% | |
| GGTGACACGATGTTAACATT+GGG | - | chr7_3:71207906-71207925 | Msa1121180:intron | 40.0% | |
| !! | CATCGACTTTAGTAACTGTG+AGG | + | chr7_3:71207984-71208003 | None:intergenic | 40.0% |
| AAAGCGGTTAGTGACAATGA+GGG | - | chr7_3:71208026-71208045 | Msa1121180:intron | 40.0% | |
| AGTAGGGGTAGAATGTAAAG+TGG | - | chr7_3:71208094-71208113 | Msa1121180:intron | 40.0% | |
| GTAGGGGTAGAATGTAAAGT+GGG | - | chr7_3:71208095-71208114 | Msa1121180:intron | 40.0% | |
| GTAGAATGTAAAGTGGGAGA+AGG | - | chr7_3:71208101-71208120 | Msa1121180:CDS | 40.0% | |
| AATTTGGGGAAAGTTTGGGA+AGG | - | chr7_3:71208144-71208163 | Msa1121180:CDS | 40.0% | |
| GAGTGAGAAACTGCATTCTT+TGG | - | chr7_3:71208280-71208299 | Msa1121180:intron | 40.0% | |
| AGCATCAATTTCATCACTCG+GGG | + | chr7_3:71208595-71208614 | None:intergenic | 40.0% | |
| TTCAAATCCATTCCATGTGC+CGG | - | chr7_3:71208940-71208959 | Msa1121180:intron | 40.0% | |
| ! | TTATCTTTTTACCCGGCACA+TGG | + | chr7_3:71208955-71208974 | None:intergenic | 40.0% |
| AGCACAATCGTCAAGTCATT+TGG | - | chr7_3:71209001-71209020 | Msa1121180:CDS | 40.0% | |
| GTACCATATGCACTTGAACT+GGG | + | chr7_3:71209185-71209204 | None:intergenic | 40.0% | |
| AATTCTATACGGGTGAAGTG+TGG | + | chr7_3:71209207-71209226 | None:intergenic | 40.0% | |
| ! | TCTAGAGTTCCTAACACGCA+CGG | - | chr7_3:71205852-71205871 | Msa1121180:three_prime_UTR | 45.0% |
| ! | ACGCGTTCGTGAATTTTCGT+AGG | - | chr7_3:71205888-71205907 | Msa1121180:three_prime_UTR | 45.0% |
| TCAATCTATTCAGTGCGTGC+GGG | - | chr7_3:71206007-71206026 | Msa1121180:three_prime_UTR | 45.0% | |
| AGTGGAAAACGGGAAAGTGA+CGG | + | chr7_3:71206117-71206136 | None:intergenic | 45.0% | |
| CGGAGATGAAAATGACGAAG+TGG | + | chr7_3:71206135-71206154 | None:intergenic | 45.0% | |
| ATGAAGCACGGACATTGACA+CGG | - | chr7_3:71206548-71206567 | Msa1121180:intron | 45.0% | |
| ATCAGATTCCCCCCAAAACA+AGG | + | chr7_3:71206705-71206724 | None:intergenic | 45.0% | |
| AGCATGGGTCCAGATTTCTT+AGG | + | chr7_3:71206756-71206775 | None:intergenic | 45.0% | |
| GTGAGTGCATTTGTAGTGTG+TGG | - | chr7_3:71206824-71206843 | Msa1121180:intron | 45.0% | |
| ! | GTGAAATTGGGAGAAAGTGC+AGG | - | chr7_3:71207675-71207694 | Msa1121180:intron | 45.0% |
| GGATGGATACAGCATAGTGA+TGG | + | chr7_3:71207834-71207853 | None:intergenic | 45.0% | |
| GAAAGCGGTTAGTGACAATG+AGG | - | chr7_3:71208025-71208044 | Msa1121180:intron | 45.0% | |
| GTGACAATGAGGGAAATGCA+AGG | - | chr7_3:71208036-71208055 | Msa1121180:intron | 45.0% | |
| ACAATGAGGGAAATGCAAGG+AGG | - | chr7_3:71208039-71208058 | Msa1121180:intron | 45.0% | |
| CAATGAGGGAAATGCAAGGA+GGG | - | chr7_3:71208040-71208059 | Msa1121180:intron | 45.0% | |
| ! | ATGCAAGGAGGGAGCATATT+AGG | - | chr7_3:71208051-71208070 | Msa1121180:intron | 45.0% |
| ! | TGCAAGGAGGGAGCATATTA+GGG | - | chr7_3:71208052-71208071 | Msa1121180:intron | 45.0% |
| TAGGGATCTGAATGTAAGGG+AGG | - | chr7_3:71208070-71208089 | Msa1121180:intron | 45.0% | |
| AGGGATCTGAATGTAAGGGA+GGG | - | chr7_3:71208071-71208090 | Msa1121180:intron | 45.0% | |
| TGAATGTAAGGGAGGGAGTA+GGG | - | chr7_3:71208078-71208097 | Msa1121180:intron | 45.0% | |
| TCAAATCCATTCCATGTGCC+GGG | - | chr7_3:71208941-71208960 | Msa1121180:intron | 45.0% | |
| ! | TTTTTACCCGGCACATGGAA+TGG | + | chr7_3:71208950-71208969 | None:intergenic | 45.0% |
| GGTACCATATGCACTTGAAC+TGG | + | chr7_3:71209186-71209205 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTATGTTTATT+TGG | - | chr7_3:71206374-71206393 | Msa1121180:intron | 5.0% |
| CAGGAAAATGCGGACAGAGA+TGG | + | chr7_3:71205933-71205952 | None:intergenic | 50.0% | |
| ACGCAGACGATCATCTTCAC+CGG | + | chr7_3:71206067-71206086 | None:intergenic | 50.0% | |
| !! | CTTGAGAGCATCATCAGCCT+CGG | + | chr7_3:71206255-71206274 | None:intergenic | 50.0% |
| TACTGCTGGGCTATGAAGCA+CGG | - | chr7_3:71206536-71206555 | Msa1121180:intron | 50.0% | |
| ! | TATCTTGGTGACCACGGATC+TGG | - | chr7_3:71206960-71206979 | Msa1121180:intron | 50.0% |
| ! | GGGTAACTTTTCAGCACCCT+AGG | + | chr7_3:71207712-71207731 | None:intergenic | 50.0% |
| CTGAATGTAAGGGAGGGAGT+AGG | - | chr7_3:71208077-71208096 | Msa1121180:intron | 50.0% | |
| GAATGTAAGGGAGGGAGTAG+GGG | - | chr7_3:71208079-71208098 | Msa1121180:intron | 50.0% | |
| GAAGGGAGAGTTGAGAGGTA+AGG | - | chr7_3:71208119-71208138 | Msa1121180:CDS | 50.0% | |
| TTGGGGAAAGTTTGGGAAGG+AGG | - | chr7_3:71208147-71208166 | Msa1121180:CDS | 50.0% | |
| GCTCCCAGTTCAAGTGCATA+TGG | - | chr7_3:71209179-71209198 | Msa1121180:intron | 50.0% | |
| AGTTCCTAACACGCACGGCA+CGG | - | chr7_3:71205857-71205876 | Msa1121180:three_prime_UTR | 55.0% | |
| ACTCACCTGGTGACCAACGA+CGG | + | chr7_3:71206092-71206111 | None:intergenic | 55.0% | |
| ! | GAAAGTGACGGAGACTCACC+TGG | + | chr7_3:71206105-71206124 | None:intergenic | 55.0% |
| ATGTCGTCGACGAACGAGGT+AGG | - | chr7_3:71206303-71206322 | Msa1121180:intron | 55.0% | |
| ! | CTATCGTGCAGTGCCGCTAT+GGG | + | chr7_3:71207466-71207485 | None:intergenic | 55.0% |
| ! | ACTATCGTGCAGTGCCGCTA+TGG | + | chr7_3:71207467-71207486 | None:intergenic | 55.0% |
| TGGGAGAAGGGAGAGTTGAG+AGG | - | chr7_3:71208114-71208133 | Msa1121180:CDS | 55.0% | |
| CACTCGGGGAAATGACAGCA+GGG | + | chr7_3:71208581-71208600 | None:intergenic | 55.0% | |
| TCACTCGGGGAAATGACAGC+AGG | + | chr7_3:71208582-71208601 | None:intergenic | 55.0% | |
| GTTCCTAACACGCACGGCAC+GGG | - | chr7_3:71205858-71205877 | Msa1121180:three_prime_UTR | 60.0% | |
| TTCCTAACACGCACGGCACG+GGG | - | chr7_3:71205859-71205878 | Msa1121180:three_prime_UTR | 60.0% | |
| !! | CGAAGTGTCGAGGGTCTACG+TGG | + | chr7_3:71206044-71206063 | None:intergenic | 60.0% |
| GTAGACCCTCGACACTTCGC+CGG | - | chr7_3:71206045-71206064 | Msa1121180:exon | 60.0% | |
| !! | CTTCACCGGCGAAGTGTCGA+GGG | + | chr7_3:71206053-71206072 | None:intergenic | 60.0% |
| !! | TCTTCACCGGCGAAGTGTCG+AGG | + | chr7_3:71206054-71206073 | None:intergenic | 60.0% |
| GCGAGCAATGGACGATGTGG+TGG | + | chr7_3:71206280-71206299 | None:intergenic | 60.0% | |
| CGAGCGAGCAATGGACGATG+TGG | + | chr7_3:71206283-71206302 | None:intergenic | 60.0% | |
| CGACGACATCGAGCGAGCAA+TGG | + | chr7_3:71206292-71206311 | None:intergenic | 60.0% | |
| CTCGATGTCGTCGACGAACG+AGG | - | chr7_3:71206299-71206318 | Msa1121180:intron | 60.0% | |
| ATCGTCTGCGTCGCCGTCGT+TGG | - | chr7_3:71206076-71206095 | Msa1121180:CDS | 65.0% | |
| CTCCCCGTGCCGTGCGTGTT+AGG | + | chr7_3:71205864-71205883 | None:intergenic | 70.0% | |
| CGTCGCCGTCGTTGGTCACC+AGG | - | chr7_3:71206084-71206103 | Msa1121180:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 71205684 | 71209420 | 71205684 | ID=Msa1121180;Name=Msa1121180 |
| chr7_3 | mRNA | 71205684 | 71209420 | 71205684 | ID=Msa1121180-mRNA-1;Parent=Msa1121180;Name=Msa1121180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=279|1|1|1|0.8|0.66|6|378|143 |
| chr7_3 | exon | 71205684 | 71206202 | 71205684 | ID=Msa1121180-mRNA-1:exon:18199;Parent=Msa1121180-mRNA-1 |
| chr7_3 | exon | 71208096 | 71208177 | 71208096 | ID=Msa1121180-mRNA-1:exon:18198;Parent=Msa1121180-mRNA-1 |
| chr7_3 | exon | 71208281 | 71208359 | 71208281 | ID=Msa1121180-mRNA-1:exon:18197;Parent=Msa1121180-mRNA-1 |
| chr7_3 | exon | 71208784 | 71208880 | 71208784 | ID=Msa1121180-mRNA-1:exon:18196;Parent=Msa1121180-mRNA-1 |
| chr7_3 | exon | 71208999 | 71209084 | 71208999 | ID=Msa1121180-mRNA-1:exon:18195;Parent=Msa1121180-mRNA-1 |
| chr7_3 | exon | 71209195 | 71209420 | 71209195 | ID=Msa1121180-mRNA-1:exon:18194;Parent=Msa1121180-mRNA-1 |
| chr7_3 | five_prime_UTR | 71209195 | 71209420 | 71209195 | ID=Msa1121180-mRNA-1:five_prime_utr;Parent=Msa1121180-mRNA-1 |
| chr7_3 | five_prime_UTR | 71209032 | 71209084 | 71209032 | ID=Msa1121180-mRNA-1:five_prime_utr;Parent=Msa1121180-mRNA-1 |
| chr7_3 | CDS | 71208999 | 71209031 | 71208999 | ID=Msa1121180-mRNA-1:cds;Parent=Msa1121180-mRNA-1 |
| chr7_3 | CDS | 71208784 | 71208880 | 71208784 | ID=Msa1121180-mRNA-1:cds;Parent=Msa1121180-mRNA-1 |
| chr7_3 | CDS | 71208281 | 71208359 | 71208281 | ID=Msa1121180-mRNA-1:cds;Parent=Msa1121180-mRNA-1 |
| chr7_3 | CDS | 71208096 | 71208177 | 71208096 | ID=Msa1121180-mRNA-1:cds;Parent=Msa1121180-mRNA-1 |
| chr7_3 | CDS | 71206062 | 71206202 | 71206062 | ID=Msa1121180-mRNA-1:cds;Parent=Msa1121180-mRNA-1 |
| chr7_3 | three_prime_UTR | 71205684 | 71206061 | 71205684 | ID=Msa1121180-mRNA-1:three_prime_utr;Parent=Msa1121180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
