AlfalfaGEDB | Msa1123430

M. sativa cultivar zhongmu-4 / Msa1123430

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009799 GO:0009855 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0060828 GO:0065007 GO:0072359 GO:0090090 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123430	XP_013461666.1	94.231	52	1	1	2	51	86	137	1.67e-22	97.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123430	A0A072V1Y3	94.231	52	1	1	2	51	86	137	7.95e-23	97.1

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0636170	Msa1123430	0.806714	7.194452e-50	-8.615850e-47
Msa0885280	Msa1123430	0.804393	2.207475e-49	-8.615850e-47
Msa0907260	Msa1123430	0.808774	2.624875e-50	-8.615850e-47
Msa0954910	Msa1123430	0.808127	3.607542e-50	-8.615850e-47
Msa1024240	Msa1123430	0.801874	7.326851e-49	-8.615850e-47
Msa1123420	Msa1123430	0.871312	7.520583e-67	-8.615850e-47
Msa1123430	Msa1136090	0.815694	8.108430e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1123430	MtrunA17_Chr3g0131781	94.231	52	1	1	2	51	86	137	1.53e-26	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 20 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCGACGGTGTAATTAT+TGG	0.331686	7_3:+74273291	Msa1123430:CDS
AATAATTACACCGTCGGTGT+TGG	0.505458	7_3:-74273289	None:intergenic
ACGGTGTAATTATTGGTAGC+TGG	0.534282	7_3:+74273298	Msa1123430:CDS
CAAAAGACCAAGATCGAATT+GGG	0.359194	7_3:+74273338	Msa1123430:CDS
CCAAAAGACCAAGATCGAAT+TGG	0.364115	7_3:+74273337	Msa1123430:CDS
CCAATTCGATCTTGGTCTTT+TGG	0.187350	7_3:-74273337	None:intergenic
CCCAATGCACATCAAGAAAG+AGG	0.500405	7_3:+74273728	Msa1123430:CDS
CCTCTTTCTTGATGTGCATT+GGG	0.389933	7_3:-74273728	None:intergenic
CGTTCAAACCAAATACAATT+AGG	0.178192	7_3:-74273688	None:intergenic
GAAGAAACCCAATTCGATCT+TGG	0.472216	7_3:-74273345	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCGGTTCAAAATAAATAAAC+CGG	+	chr7_3:74273516-74273535	Msa1123430:intron	30.0%
CTGAATTGTATCCATTAATG+TGG	+	chr7_3:74273631-74273650	Msa1123430:intron	30.0%
CGTTCAAACCAAATACAATT+AGG	-	chr7_3:74273691-74273710	None:intergenic	30.0%
CAAAAGACCAAGATCGAATT+GGG	+	chr7_3:74273338-74273357	Msa1123430:CDS	35.0%
TTGGAACTGAACCACATTAA+TGG	-	chr7_3:74273645-74273664	None:intergenic	35.0%
TGAACACCCCTAATTGTATT+TGG	+	chr7_3:74273680-74273699	Msa1123430:CDS	35.0%
AATAATTACACCGTCGGTGT+TGG	-	chr7_3:74273292-74273311	None:intergenic	40.0%
AACACCGACGGTGTAATTAT+TGG	+	chr7_3:74273291-74273310	Msa1123430:CDS	40.0%
GCTACCAATAATTACACCGT+CGG	-	chr7_3:74273298-74273317	None:intergenic	40.0%
TGGTAGCTGGAAAGTGAAAA+AGG	+	chr7_3:74273311-74273330	Msa1123430:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	74273273	74273759	74273273	ID=Msa1123430;Name=Msa1123430
chr7_3	mRNA	74273273	74273759	74273273	ID=Msa1123430-mRNA-1;Parent=Msa1123430;Name=Msa1123430-mRNA-1;_AED=0.52;_eAED=0.53;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|84
chr7_3	exon	74273273	74273426	74273273	ID=Msa1123430-mRNA-1:exon:19742;Parent=Msa1123430-mRNA-1
chr7_3	exon	74273659	74273759	74273659	ID=Msa1123430-mRNA-1:exon:19743;Parent=Msa1123430-mRNA-1
chr7_3	CDS	74273273	74273426	74273273	ID=Msa1123430-mRNA-1:cds;Parent=Msa1123430-mRNA-1
chr7_3	CDS	74273659	74273759	74273659	ID=Msa1123430-mRNA-1:cds;Parent=Msa1123430-mRNA-1

Gene Sequence	>Msa1123430 ATGGAAGACGTAGAAACCAACACCGACGGTGTAATTATTGGTAGCTGGAAAGTGAAAAAGGGTTCCAAAAGACCAAGATCGAATTGGGTTTCTTCGCGAATTGAAGAAGGTGAAGATGTTAATAATGATGATGATTTGTATCGAGATTTTGAAGTTCCAATGCAGTTTAGAACAATGAACACCCCTAATTGTATTTGGTTTGAACGTTTACCATCTTTTGCGTCCCAATGCACATCAAGAAAGAGGCTACAATAG
Protein sequence	>Msa1123430 MEDVETNTDGVIIGSWKVKKGSKRPRSNWVSSRIEEGEDVNNDDDLYRDFEVPMQFRTMNTPNCIWFERLPSFASQCTSRKRLQ*