Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636170 | XP_013461666.1 | 79.861 | 144 | 7 | 2 | 1 | 122 | 1 | 144 | 2.83e-64 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636170 | A0A072V1Y3 | 79.861 | 144 | 7 | 2 | 1 | 122 | 1 | 144 | 1.35e-64 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013750 | Msa0636170 | 0.800652 | 1.303291e-48 | -8.615850e-47 |
| Msa0015750 | Msa0636170 | 0.862614 | 4.474792e-64 | -8.615850e-47 |
| Msa0016570 | Msa0636170 | 0.855087 | 7.979243e-62 | -8.615850e-47 |
| Msa0016580 | Msa0636170 | 0.852364 | 4.845466e-61 | -8.615850e-47 |
| Msa0062860 | Msa0636170 | 0.811874 | 5.627802e-51 | -8.615850e-47 |
| Msa0092630 | Msa0636170 | 0.810324 | 1.219938e-50 | -8.615850e-47 |
| Msa0102070 | Msa0636170 | 0.850292 | 1.866485e-60 | -8.615850e-47 |
| Msa0107580 | Msa0636170 | 0.802901 | 4.501657e-49 | -8.615850e-47 |
| Msa0110270 | Msa0636170 | 0.841866 | 3.664155e-58 | -8.615850e-47 |
| Msa0111510 | Msa0636170 | 0.807559 | 4.765450e-50 | -8.615850e-47 |
| Msa0604350 | Msa0636170 | 0.973098 | 7.399839e-136 | -8.615850e-47 |
| Msa0627410 | Msa0636170 | 0.802809 | 4.703373e-49 | -8.615850e-47 |
| Msa0636170 | Msa0668260 | 0.800777 | 1.229414e-48 | -8.615850e-47 |
| Msa0636170 | Msa0673450 | 0.802409 | 5.688263e-49 | -8.615850e-47 |
| Msa0636170 | Msa0678930 | 0.836809 | 7.526821e-57 | -8.615850e-47 |
| Msa0636170 | Msa0686270 | 0.801806 | 7.565870e-49 | -8.615850e-47 |
| Msa0636170 | Msa0688270 | 0.806169 | 9.373228e-50 | -8.615850e-47 |
| Msa0636170 | Msa0689390 | 0.808125 | 3.611343e-50 | -8.615850e-47 |
| Msa0636170 | Msa0694370 | 0.847673 | 9.965963e-60 | -8.615850e-47 |
| Msa0636170 | Msa0722510 | 0.812000 | 5.283714e-51 | -8.615850e-47 |
| Msa0636170 | Msa0725850 | 0.804352 | 2.250700e-49 | -8.615850e-47 |
| Msa0636170 | Msa0726140 | 0.862792 | 3.942593e-64 | -8.615850e-47 |
| Msa0636170 | Msa0729800 | 0.879251 | 1.451953e-69 | -8.615850e-47 |
| Msa0636170 | Msa0732710 | 0.825427 | 4.716457e-54 | -8.615850e-47 |
| Msa0636170 | Msa0733290 | 0.860253 | 2.350169e-63 | -8.615850e-47 |
| Msa0636170 | Msa0743810 | 0.892850 | 1.084620e-74 | -8.615850e-47 |
| Msa0636170 | Msa0745060 | 0.889360 | 2.598161e-73 | -8.615850e-47 |
| Msa0636170 | Msa0762360 | 0.802735 | 4.871373e-49 | -8.615850e-47 |
| Msa0636170 | Msa0764960 | 0.812166 | 4.860373e-51 | -8.615850e-47 |
| Msa0636170 | Msa0766630 | 0.815009 | 1.151091e-51 | -8.615850e-47 |
| Msa0636170 | Msa0767720 | 0.852192 | 5.424008e-61 | -8.615850e-47 |
| Msa0636170 | Msa0768290 | 0.802771 | 4.789503e-49 | -8.615850e-47 |
| Msa0636170 | Msa0768370 | 0.806509 | 7.946618e-50 | -8.615850e-47 |
| Msa0636170 | Msa0777870 | 0.824381 | 8.325486e-54 | -8.615850e-47 |
| Msa0636170 | Msa0783160 | 0.854842 | 9.402213e-62 | -8.615850e-47 |
| Msa0636170 | Msa0784290 | 0.816220 | 6.186075e-52 | -8.615850e-47 |
| Msa0636170 | Msa0784300 | 0.810103 | 1.361615e-50 | -8.615850e-47 |
| Msa0636170 | Msa0787600 | 0.849175 | 3.827655e-60 | -8.615850e-47 |
| Msa0636170 | Msa0789250 | 0.834359 | 3.137913e-56 | -8.615850e-47 |
| Msa0636170 | Msa0808010 | 0.843610 | 1.260122e-58 | -8.615850e-47 |
| Msa0636170 | Msa0808020 | 0.835192 | 1.935774e-56 | -8.615850e-47 |
| Msa0636170 | Msa0811080 | 0.834234 | 3.372759e-56 | -8.615850e-47 |
| Msa0636170 | Msa0811270 | 0.809522 | 1.815507e-50 | -8.615850e-47 |
| Msa0636170 | Msa0825860 | 0.884021 | 2.737148e-71 | -8.615850e-47 |
| Msa0636170 | Msa0826750 | 0.819852 | 9.344923e-53 | -8.615850e-47 |
| Msa0636170 | Msa0833290 | 0.817497 | 3.198758e-52 | -8.615850e-47 |
| Msa0636170 | Msa0846210 | 0.834450 | 2.975686e-56 | -8.615850e-47 |
| Msa0636170 | Msa0846330 | 0.859114 | 5.172175e-63 | -8.615850e-47 |
| Msa0636170 | Msa0846350 | 0.855982 | 4.376623e-62 | -8.615850e-47 |
| Msa0636170 | Msa0848960 | 0.812121 | 4.971042e-51 | -8.615850e-47 |
| Msa0636170 | Msa0851390 | 0.802169 | 6.373348e-49 | -8.615850e-47 |
| Msa0636170 | Msa0854980 | 0.813007 | 3.183060e-51 | -8.615850e-47 |
| Msa0636170 | Msa0858980 | 0.856165 | 3.867940e-62 | -8.615850e-47 |
| Msa0636170 | Msa0865320 | 0.867128 | 1.718801e-65 | -8.615850e-47 |
| Msa0636170 | Msa0872230 | 0.828015 | 1.136857e-54 | -8.615850e-47 |
| Msa0636170 | Msa0885280 | 0.827760 | 1.309063e-54 | -8.615850e-47 |
| Msa0636170 | Msa0885290 | 0.857960 | 1.142654e-62 | -8.615850e-47 |
| Msa0636170 | Msa0886750 | 0.817195 | 3.740256e-52 | -8.615850e-47 |
| Msa0636170 | Msa0887990 | 0.802371 | 5.792543e-49 | -8.615850e-47 |
| Msa0636170 | Msa0888370 | 0.861166 | 1.241962e-63 | -8.615850e-47 |
| Msa0636170 | Msa0888420 | 0.801589 | 8.384623e-49 | -8.615850e-47 |
| Msa0636170 | Msa0896080 | 0.809915 | 1.494350e-50 | -8.615850e-47 |
| Msa0636170 | Msa0899450 | 0.803439 | 3.484076e-49 | -8.615850e-47 |
| Msa0636170 | Msa0907260 | 0.831637 | 1.491025e-55 | -8.615850e-47 |
| Msa0636170 | Msa0914760 | 0.810314 | 1.226174e-50 | -8.615850e-47 |
| Msa0636170 | Msa0952720 | 0.821395 | 4.130133e-53 | -8.615850e-47 |
| Msa0636170 | Msa0954910 | 0.836525 | 8.894105e-57 | -8.615850e-47 |
| Msa0636170 | Msa0956270 | 0.824820 | 6.562451e-54 | -8.615850e-47 |
| Msa0636170 | Msa0957680 | 0.805713 | 1.169032e-49 | -8.615850e-47 |
| Msa0636170 | Msa0957860 | 0.832457 | 9.350284e-56 | -8.615850e-47 |
| Msa0636170 | Msa0957960 | 0.831810 | 1.351340e-55 | -8.615850e-47 |
| Msa0636170 | Msa0974870 | 0.816775 | 4.647045e-52 | -8.615850e-47 |
| Msa0636170 | Msa0979410 | 0.800847 | 1.189622e-48 | -8.615850e-47 |
| Msa0636170 | Msa0979850 | 0.805855 | 1.091352e-49 | -8.615850e-47 |
| Msa0636170 | Msa0981270 | 0.814191 | 1.747295e-51 | -8.615850e-47 |
| Msa0636170 | Msa0981370 | 0.842782 | 2.095128e-58 | -8.615850e-47 |
| Msa0636170 | Msa0989060 | 0.863105 | 3.157311e-64 | -8.615850e-47 |
| Msa0636170 | Msa0998690 | 0.804149 | 2.481324e-49 | -8.615850e-47 |
| Msa0636170 | Msa1014540 | 0.809180 | 2.149207e-50 | -8.615850e-47 |
| Msa0636170 | Msa1016280 | 0.866245 | 3.283119e-65 | -8.615850e-47 |
| Msa0636170 | Msa1023050 | 0.805120 | 1.556370e-49 | -8.615850e-47 |
| Msa0636170 | Msa1024240 | 0.853189 | 2.815759e-61 | -8.615850e-47 |
| Msa0636170 | Msa1024370 | 0.811354 | 7.301355e-51 | -8.615850e-47 |
| Msa0636170 | Msa1025360 | 0.881224 | 2.866023e-70 | -8.615850e-47 |
| Msa0636170 | Msa1025370 | 0.882863 | 7.291421e-71 | -8.615850e-47 |
| Msa0636170 | Msa1028230 | 0.801004 | 1.104510e-48 | -8.615850e-47 |
| Msa0636170 | Msa1030060 | 0.817751 | 2.802528e-52 | -8.615850e-47 |
| Msa0636170 | Msa1042430 | 0.838110 | 3.493277e-57 | -8.615850e-47 |
| Msa0636170 | Msa1044830 | 0.887860 | 9.839973e-73 | -8.615850e-47 |
| Msa0636170 | Msa1044840 | 0.879115 | 1.620782e-69 | -8.615850e-47 |
| Msa0636170 | Msa1060840 | 0.811795 | 5.854224e-51 | -8.615850e-47 |
| Msa0636170 | Msa1065570 | 0.803802 | 2.929567e-49 | -8.615850e-47 |
| Msa0636170 | Msa1077460 | 0.806383 | 8.447098e-50 | -8.615850e-47 |
| Msa0636170 | Msa1092990 | 0.881505 | 2.269583e-70 | -8.615850e-47 |
| Msa0636170 | Msa1096580 | 0.831685 | 1.451314e-55 | -8.615850e-47 |
| Msa0636170 | Msa1100980 | 0.890305 | 1.110480e-73 | -8.615850e-47 |
| Msa0636170 | Msa1109440 | 0.850862 | 1.290479e-60 | -8.615850e-47 |
| Msa0636170 | Msa1112300 | 0.837140 | 6.194982e-57 | -8.615850e-47 |
| Msa0636170 | Msa1121200 | 0.844871 | 5.777858e-59 | -8.615850e-47 |
| Msa0636170 | Msa1121490 | 0.801119 | 1.046233e-48 | -8.615850e-47 |
| Msa0636170 | Msa1123420 | 0.837257 | 5.784037e-57 | -8.615850e-47 |
| Msa0636170 | Msa1123430 | 0.806714 | 7.194452e-50 | -8.615850e-47 |
| Msa0636170 | Msa1135740 | 0.879758 | 9.589227e-70 | -8.615850e-47 |
| Msa0636170 | Msa1136090 | 0.821394 | 4.133868e-53 | -8.615850e-47 |
| Msa0636170 | Msa1146100 | 0.807617 | 4.631062e-50 | -8.615850e-47 |
| Msa0636170 | Msa1146110 | 0.896791 | 2.627090e-76 | -8.615850e-47 |
| Msa0636170 | Msa1148020 | 0.823026 | 1.728728e-53 | -8.615850e-47 |
| Msa0636170 | Msa1149360 | 0.804349 | 2.254897e-49 | -8.615850e-47 |
| Msa0636170 | Msa1150370 | 0.838766 | 2.365627e-57 | -8.615850e-47 |
| Msa0636170 | Msa1160670 | 0.833557 | 4.981634e-56 | -8.615850e-47 |
| Msa0636170 | Msa1164120 | 0.831418 | 1.687972e-55 | -8.615850e-47 |
| Msa0636170 | Msa1173920 | 0.835475 | 1.642292e-56 | -8.615850e-47 |
| Msa0636170 | Msa1178340 | 0.824105 | 9.666025e-54 | -8.615850e-47 |
| Msa0636170 | Msa1178720 | 0.812340 | 4.453225e-51 | -8.615850e-47 |
| Msa0636170 | Msa1182090 | 0.805533 | 1.274796e-49 | -8.615850e-47 |
| Msa0636170 | Msa1187940 | 0.898538 | 4.809656e-77 | -8.615850e-47 |
| Msa0636170 | Msa1187950 | 0.870200 | 1.746583e-66 | -8.615850e-47 |
| Msa0636170 | Msa1192640 | 0.859439 | 4.132372e-63 | -8.615850e-47 |
| Msa0636170 | Msa1193730 | 0.819744 | 9.886649e-53 | -8.615850e-47 |
| Msa0636170 | Msa1211030 | 0.803543 | 3.316066e-49 | -8.615850e-47 |
| Msa0636170 | Msa1230430 | 0.809563 | 1.778658e-50 | -8.615850e-47 |
| Msa0636170 | Msa1246880 | 0.854595 | 1.108553e-61 | -8.615850e-47 |
| Msa0636170 | Msa1260100 | 0.839426 | 1.595983e-57 | -8.615850e-47 |
| Msa0636170 | Msa1269670 | 0.882948 | 6.784400e-71 | -8.615850e-47 |
| Msa0636170 | Msa1270230 | 0.887268 | 1.656940e-72 | -8.615850e-47 |
| Msa0636170 | Msa1270240 | 0.857120 | 2.026321e-62 | -8.615850e-47 |
| Msa0636170 | Msa1270270 | 0.869187 | 3.735545e-66 | -8.615850e-47 |
| Msa0636170 | Msa1283330 | 0.885026 | 1.158806e-71 | -8.615850e-47 |
| Msa0636170 | Msa1284680 | 0.802708 | 4.934033e-49 | -8.615850e-47 |
| Msa0636170 | Msa1285930 | 0.868885 | 4.680266e-66 | -8.615850e-47 |
| Msa0636170 | Msa1287800 | 0.865931 | 4.128593e-65 | -8.615850e-47 |
| Msa0636170 | Msa1287810 | 0.887392 | 1.485276e-72 | -8.615850e-47 |
| Msa0636170 | Msa1287830 | 0.817410 | 3.345675e-52 | -8.615850e-47 |
| Msa0636170 | Msa1288560 | 0.802628 | 5.125406e-49 | -8.615850e-47 |
| Msa0636170 | Msa1289430 | 0.852872 | 3.471169e-61 | -8.615850e-47 |
| Msa0636170 | Msa1297210 | 0.858710 | 6.832609e-63 | -8.615850e-47 |
| Msa0636170 | Msa1305480 | 0.826786 | 2.240913e-54 | -8.615850e-47 |
| Msa0636170 | Msa1307890 | 0.846559 | 2.012432e-59 | -8.615850e-47 |
| Msa0636170 | Msa1310120 | 0.810242 | 1.270798e-50 | -8.615850e-47 |
| Msa0636170 | Msa1320300 | 0.832989 | 6.897520e-56 | -8.615850e-47 |
| Msa0636170 | Msa1340590 | 0.871690 | 5.641198e-67 | -8.615850e-47 |
| Msa0636170 | Msa1344520 | 0.816042 | 6.782040e-52 | -8.615850e-47 |
| Msa0636170 | Msa1369430 | 0.823925 | 1.065374e-53 | -8.615850e-47 |
| Msa0636170 | Msa1382690 | 0.824802 | 6.624253e-54 | -8.615850e-47 |
| Msa0636170 | Msa1382700 | 0.808434 | 3.102441e-50 | -8.615850e-47 |
| Msa0636170 | Msa1386330 | 0.827358 | 1.635012e-54 | -8.615850e-47 |
| Msa0636170 | Msa1397150 | 0.810183 | 1.308625e-50 | -8.615850e-47 |
| Msa0636170 | Msa1397580 | 0.860852 | 1.546982e-63 | -8.615850e-47 |
| Msa0636170 | Msa1402790 | 0.817344 | 3.463044e-52 | -8.615850e-47 |
| Msa0636170 | Msa1404000 | 0.852956 | 3.284690e-61 | -8.615850e-47 |
| Msa0636170 | Msa1408780 | 0.840261 | 9.670529e-58 | -8.615850e-47 |
| Msa0636170 | Msa1415310 | 0.863469 | 2.435266e-64 | -8.615850e-47 |
| Msa0636170 | Msa1422180 | 0.852314 | 5.006643e-61 | -8.615850e-47 |
| Msa0636170 | Msa1433120 | 0.856782 | 2.548963e-62 | -8.615850e-47 |
| Msa0636170 | Msa1451190 | 0.868983 | 4.350406e-66 | -8.615850e-47 |
| Msa0636170 | Msa1451570 | 0.831566 | 1.552158e-55 | -8.615850e-47 |
| Msa0123810 | Msa0636170 | 0.808478 | 3.036458e-50 | -8.615850e-47 |
| Msa0124100 | Msa0636170 | 0.804984 | 1.661490e-49 | -8.615850e-47 |
| Msa0142220 | Msa0636170 | 0.864606 | 1.077669e-64 | -8.615850e-47 |
| Msa0145750 | Msa0636170 | 0.836816 | 7.498204e-57 | -8.615850e-47 |
| Msa0153910 | Msa0636170 | 0.834152 | 3.535042e-56 | -8.615850e-47 |
| Msa0197010 | Msa0636170 | 0.819072 | 1.407167e-52 | -8.615850e-47 |
| Msa0200000 | Msa0636170 | 0.854767 | 9.885475e-62 | -8.615850e-47 |
| Msa0200940 | Msa0636170 | 0.801295 | 9.632661e-49 | -8.615850e-47 |
| Msa0227480 | Msa0636170 | 0.871104 | 8.810466e-67 | -8.615850e-47 |
| Msa0232850 | Msa0636170 | 0.851069 | 1.128543e-60 | -8.615850e-47 |
| Msa0365500 | Msa0636170 | 0.843967 | 1.011321e-58 | -8.615850e-47 |
| Msa0384800 | Msa0636170 | 0.847110 | 1.422430e-59 | -8.615850e-47 |
| Msa0384890 | Msa0636170 | 0.803842 | 2.874763e-49 | -8.615850e-47 |
| Msa0394970 | Msa0636170 | 0.809656 | 1.698703e-50 | -8.615850e-47 |
| Msa0406120 | Msa0636170 | 0.824105 | 9.665036e-54 | -8.615850e-47 |
| Msa0407750 | Msa0636170 | 0.827851 | 1.244993e-54 | -8.615850e-47 |
| Msa0414410 | Msa0636170 | 0.844295 | 8.258223e-59 | -8.615850e-47 |
| Msa0414420 | Msa0636170 | 0.878442 | 2.798868e-69 | -8.615850e-47 |
| Msa0432290 | Msa0636170 | 0.835980 | 1.223472e-56 | -8.615850e-47 |
| Msa0435230 | Msa0636170 | 0.806342 | 8.619284e-50 | -8.615850e-47 |
| Msa0436780 | Msa0636170 | 0.832754 | 7.890295e-56 | -8.615850e-47 |
| Msa0436800 | Msa0636170 | 0.825944 | 3.556362e-54 | -8.615850e-47 |
| Msa0438620 | Msa0636170 | 0.823705 | 1.199639e-53 | -8.615850e-47 |
| Msa0444130 | Msa0636170 | 0.814454 | 1.528392e-51 | -8.615850e-47 |
| Msa0450000 | Msa0636170 | 0.850224 | 1.949775e-60 | -8.615850e-47 |
| Msa0451730 | Msa0636170 | 0.813639 | 2.311651e-51 | -8.615850e-47 |
| Msa0452900 | Msa0636170 | 0.893211 | 7.760343e-75 | -8.615850e-47 |
| Msa0453120 | Msa0636170 | 0.851948 | 6.363729e-61 | -8.615850e-47 |
| Msa0454370 | Msa0636170 | 0.829321 | 5.494171e-55 | -8.615850e-47 |
| Msa0454910 | Msa0636170 | 0.832392 | 9.702778e-56 | -8.615850e-47 |
| Msa0456840 | Msa0636170 | 0.808346 | 3.239945e-50 | -8.615850e-47 |
| Msa0459160 | Msa0636170 | 0.830518 | 2.807887e-55 | -8.615850e-47 |
| Msa0479340 | Msa0636170 | 0.828097 | 1.086581e-54 | -8.615850e-47 |
| Msa0482620 | Msa0636170 | 0.827664 | 1.380801e-54 | -8.615850e-47 |
| Msa0247260 | Msa0636170 | 0.800985 | 1.114845e-48 | -8.615850e-47 |
| Msa0251320 | Msa0636170 | 0.800951 | 1.132482e-48 | -8.615850e-47 |
| Msa0256440 | Msa0636170 | 0.804821 | 1.796862e-49 | -8.615850e-47 |
| Msa0266720 | Msa0636170 | 0.801699 | 7.961950e-49 | -8.615850e-47 |
| Msa0267000 | Msa0636170 | 0.877337 | 6.812968e-69 | -8.615850e-47 |
| Msa0267010 | Msa0636170 | 0.870772 | 1.133270e-66 | -8.615850e-47 |
| Msa0270520 | Msa0636170 | 0.813882 | 2.043670e-51 | -8.615850e-47 |
| Msa0290870 | Msa0636170 | 0.809824 | 1.563206e-50 | -8.615850e-47 |
| Msa0304170 | Msa0636170 | 0.833045 | 6.682517e-56 | -8.615850e-47 |
| Msa0306460 | Msa0636170 | 0.848036 | 7.916848e-60 | -8.615850e-47 |
| Msa0313760 | Msa0636170 | 0.800727 | 1.258145e-48 | -8.615850e-47 |
| Msa0326200 | Msa0636170 | 0.800167 | 1.636246e-48 | -8.615850e-47 |
| Msa0337900 | Msa0636170 | 0.807082 | 6.014859e-50 | -8.615850e-47 |
| Msa0342240 | Msa0636170 | 0.876986 | 9.024157e-69 | -8.615850e-47 |
| Msa0353190 | Msa0636170 | 0.802600 | 5.193885e-49 | -8.615850e-47 |
| Msa0360510 | Msa0636170 | 0.862991 | 3.421732e-64 | -8.615850e-47 |
| Msa0362420 | Msa0636170 | 0.831402 | 1.703708e-55 | -8.615850e-47 |
| Msa0363300 | Msa0636170 | 0.824965 | 6.063450e-54 | -8.615850e-47 |
| Msa0485370 | Msa0636170 | 0.813148 | 2.963148e-51 | -8.615850e-47 |
| Msa0491590 | Msa0636170 | 0.845249 | 4.568523e-59 | -8.615850e-47 |
| Msa0502760 | Msa0636170 | 0.814780 | 1.293878e-51 | -8.615850e-47 |
| Msa0506270 | Msa0636170 | 0.858957 | 5.763632e-63 | -8.615850e-47 |
| Msa0534540 | Msa0636170 | 0.814678 | 1.363050e-51 | -8.615850e-47 |
| Msa0548060 | Msa0636170 | 0.805320 | 1.412857e-49 | -8.615850e-47 |
| Msa0564890 | Msa0636170 | 0.841666 | 4.138036e-58 | -8.615850e-47 |
| Msa0596150 | Msa0636170 | 0.859724 | 3.394073e-63 | -8.615850e-47 |
| Msa0598780 | Msa0636170 | 0.833388 | 5.488104e-56 | -8.615850e-47 |
| Msa0600700 | Msa0636170 | 0.808461 | 3.062921e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0636170 | MtrunA17_Chr3g0131781 | 79.861 | 144 | 7 | 2 | 1 | 122 | 1 | 144 | 2.60e-68 | 206 |
| Msa0636170 | MtrunA17_Chr8g0385941 | 42.442 | 172 | 42 | 9 | 1 | 121 | 1 | 166 | 1.05e-21 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTCGATCTTGGTCTTT+TGG | 0.187350 | 4_3:-26030818 | None:intergenic |
| TGGTAGCTGGAAAGTGAAAA+AGG | 0.224871 | 4_3:+26030792 | Msa0636170:CDS |
| TCGTTGCTCCGCCGTTTATT+TGG | 0.233205 | 4_3:-26030527 | None:intergenic |
| AACACCGACGGTGTAATTAT+TGG | 0.331686 | 4_3:+26030772 | Msa0636170:CDS |
| CAAAAGACCAAGATCGAATT+GGG | 0.359194 | 4_3:+26030819 | Msa0636170:CDS |
| CCAAAAGACCAAGATCGAAT+TGG | 0.364115 | 4_3:+26030818 | Msa0636170:CDS |
| AAATCATGGCGATTCGGCTT+CGG | 0.384660 | 4_3:+26030666 | Msa0636170:CDS |
| GGTCTCCGATGTCGCCTAAT+CGG | 0.413080 | 4_3:-26030611 | None:intergenic |
| CCGCCGTTTATTTGGACCTC+CGG | 0.440203 | 4_3:-26030519 | None:intergenic |
| TTCGGCTTCGGCAACGTCTC+AGG | 0.441191 | 4_3:+26030678 | Msa0636170:CDS |
| CCACCGGAGGTCCAAATAAA+CGG | 0.460030 | 4_3:+26030516 | Msa0636170:CDS |
| GAAGAAACCCAATTCGATCT+TGG | 0.472216 | 4_3:-26030826 | None:intergenic |
| TTCGATCCGTGAGGTTCTGA+AGG | 0.475990 | 4_3:-26030567 | None:intergenic |
| AGTTCAAAATCATGGCGATT+CGG | 0.480998 | 4_3:+26030660 | Msa0636170:CDS |
| CGCCTAATCGGACGCTGGGT+CGG | 0.497118 | 4_3:-26030599 | None:intergenic |
| GCGGCGAGGGTGGGAATCAG+AGG | 0.498456 | 4_3:-26030637 | None:intergenic |
| CTCGCCGCAGTTCAAAATCA+TGG | 0.500043 | 4_3:+26030652 | Msa0636170:CDS |
| AATAATTACACCGTCGGTGT+TGG | 0.505458 | 4_3:-26030770 | None:intergenic |
| TTTATTTGGACCTCCGGTGG+CGG | 0.518429 | 4_3:-26030513 | None:intergenic |
| GTTTCTTCGCGAATTGAAGA+AGG | 0.522515 | 4_3:+26030841 | Msa0636170:CDS |
| GATGTCGCCTAATCGGACGC+TGG | 0.529379 | 4_3:-26030604 | None:intergenic |
| ACGGTGTAATTATTGGTAGC+TGG | 0.534282 | 4_3:+26030779 | Msa0636170:CDS |
| ATGTCGCCTAATCGGACGCT+GGG | 0.537206 | 4_3:-26030603 | None:intergenic |
| AATGGAAGAGGTTCCGCCAC+CGG | 0.544579 | 4_3:+26030500 | None:intergenic |
| TCGATCCGTGAGGTTCTGAA+GGG | 0.559702 | 4_3:-26030566 | None:intergenic |
| CACCGACCCAGCGTCCGATT+AGG | 0.565703 | 4_3:+26030597 | Msa0636170:CDS |
| CCGTTTATTTGGACCTCCGG+TGG | 0.575464 | 4_3:-26030516 | None:intergenic |
| CGGCGAGGGTGGGAATCAGA+GGG | 0.591797 | 4_3:-26030636 | None:intergenic |
| GAGGGTGGGAATCAGAGGGT+TGG | 0.602586 | 4_3:-26030632 | None:intergenic |
| GAAACGGAAGAAAATGGAAG+AGG | 0.606203 | 4_3:+26030488 | None:intergenic |
| GGAAGAGGTTCCGCCACCGG+AGG | 0.617458 | 4_3:+26030503 | Msa0636170:CDS |
| CGATCCGTGAGGTTCTGAAG+GGG | 0.626502 | 4_3:-26030565 | None:intergenic |
| AGCGTCCGATTAGGCGACAT+CGG | 0.639876 | 4_3:+26030606 | Msa0636170:CDS |
| GATCCGTGAGGTTCTGAAGG+GGG | 0.654909 | 4_3:-26030564 | None:intergenic |
| GCTACCAATAATTACACCGT+CGG | 0.667969 | 4_3:-26030776 | None:intergenic |
| GACGTAGAAACCAACACCGA+CGG | 0.675808 | 4_3:+26030760 | Msa0636170:intron |
| CAGAACCTCACGGATCGAAG+CGG | 0.686667 | 4_3:+26030571 | Msa0636170:CDS |
| TGTTGCCGCTTCGATCCGTG+AGG | 0.714492 | 4_3:-26030576 | None:intergenic |
| CCGGAGGTCCAAATAAACGG+CGG | 0.738172 | 4_3:+26030519 | Msa0636170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTGAAGGTGATAATT+CGG | + | chr4_3:26030897-26030916 | Msa0636170:CDS | 25.0% |
| ! | AACCAGTTCAAAAAAAAATC+TGG | + | chr4_3:26030929-26030948 | Msa0636170:CDS | 25.0% |
| !!! | AACCAGATTTTTTTTTGAAC+TGG | - | chr4_3:26030934-26030953 | None:intergenic | 25.0% |
| ! | CTGGTTAAAAATAAGTAAAC+CGG | + | chr4_3:26030948-26030967 | Msa0636170:CDS | 25.0% |
| ! | TCCTTTGACTAATTTGACTT+CGG | + | chr4_3:26030719-26030738 | Msa0636170:intron | 30.0% |
| ! | GATTTGTATCGAGATTTTGA+AGG | + | chr4_3:26030886-26030905 | Msa0636170:CDS | 30.0% |
| !! | GATTTTGAAGGTGATAATTC+GGG | + | chr4_3:26030898-26030917 | Msa0636170:CDS | 30.0% |
| AGTTCAAAATCATGGCGATT+CGG | + | chr4_3:26030660-26030679 | Msa0636170:CDS | 35.0% | |
| ACCGAAGTCAAATTAGTCAA+AGG | - | chr4_3:26030723-26030742 | None:intergenic | 35.0% | |
| CAAAAGACCAAGATCGAATT+GGG | + | chr4_3:26030819-26030838 | Msa0636170:CDS | 35.0% | |
| ! | ATCGCCATGATTTTGAACTG+CGG | - | chr4_3:26030659-26030678 | None:intergenic | 40.0% |
| TCTACGTCTTCCATCGAAAT+CGG | - | chr4_3:26030748-26030767 | None:intergenic | 40.0% | |
| AATAATTACACCGTCGGTGT+TGG | - | chr4_3:26030773-26030792 | None:intergenic | 40.0% | |
| AACACCGACGGTGTAATTAT+TGG | + | chr4_3:26030772-26030791 | Msa0636170:CDS | 40.0% | |
| GCTACCAATAATTACACCGT+CGG | - | chr4_3:26030779-26030798 | None:intergenic | 40.0% | |
| ! | ACGGTGTAATTATTGGTAGC+TGG | + | chr4_3:26030779-26030798 | Msa0636170:CDS | 40.0% |
| TGGTAGCTGGAAAGTGAAAA+AGG | + | chr4_3:26030792-26030811 | Msa0636170:CDS | 40.0% | |
| GGTAGCTGGAAAGTGAAAAA+GGG | + | chr4_3:26030793-26030812 | Msa0636170:CDS | 40.0% | |
| !! | CCAATTCGATCTTGGTCTTT+TGG | - | chr4_3:26030821-26030840 | None:intergenic | 40.0% |
| CCAAAAGACCAAGATCGAAT+TGG | + | chr4_3:26030818-26030837 | Msa0636170:CDS | 40.0% | |
| GAAGAAACCCAATTCGATCT+TGG | - | chr4_3:26030829-26030848 | None:intergenic | 40.0% | |
| GTTTCTTCGCGAATTGAAGA+AGG | + | chr4_3:26030841-26030860 | Msa0636170:CDS | 40.0% | |
| ! | ATGATTTTGAACTGCGGCGA+GGG | - | chr4_3:26030653-26030672 | None:intergenic | 45.0% |
| ! | AAATCATGGCGATTCGGCTT+CGG | + | chr4_3:26030666-26030685 | Msa0636170:CDS | 45.0% |
| ACTTCGGTTTCCGATTTCGA+TGG | + | chr4_3:26030735-26030754 | Msa0636170:intron | 45.0% | |
| TTTATTTGGACCTCCGGTGG+CGG | - | chr4_3:26030516-26030535 | None:intergenic | 50.0% | |
| CCACCGGAGGTCCAAATAAA+CGG | + | chr4_3:26030516-26030535 | Msa0636170:CDS | 50.0% | |
| TCGTTGCTCCGCCGTTTATT+TGG | - | chr4_3:26030530-26030549 | None:intergenic | 50.0% | |
| !! | TCGATCCGTGAGGTTCTGAA+GGG | - | chr4_3:26030569-26030588 | None:intergenic | 50.0% |
| ! | TTCGATCCGTGAGGTTCTGA+AGG | - | chr4_3:26030570-26030589 | None:intergenic | 50.0% |
| ! | CATGATTTTGAACTGCGGCG+AGG | - | chr4_3:26030654-26030673 | None:intergenic | 50.0% |
| CTCGCCGCAGTTCAAAATCA+TGG | + | chr4_3:26030652-26030671 | Msa0636170:CDS | 50.0% | |
| GTCAAAGGACGAGTCTTCGA+GGG | - | chr4_3:26030708-26030727 | None:intergenic | 50.0% | |
| AGTCAAAGGACGAGTCTTCG+AGG | - | chr4_3:26030709-26030728 | None:intergenic | 50.0% | |
| GACGTAGAAACCAACACCGA+CGG | + | chr4_3:26030760-26030779 | Msa0636170:intron | 50.0% | |
| CCGTTTATTTGGACCTCCGG+TGG | - | chr4_3:26030519-26030538 | None:intergenic | 55.0% | |
| CCGCCGTTTATTTGGACCTC+CGG | - | chr4_3:26030522-26030541 | None:intergenic | 55.0% | |
| CCGGAGGTCCAAATAAACGG+CGG | + | chr4_3:26030519-26030538 | Msa0636170:CDS | 55.0% | |
| CTACCCCCTTCAGAACCTCA+CGG | + | chr4_3:26030561-26030580 | Msa0636170:CDS | 55.0% | |
| !! | GATCCGTGAGGTTCTGAAGG+GGG | - | chr4_3:26030567-26030586 | None:intergenic | 55.0% |
| !! | CGATCCGTGAGGTTCTGAAG+GGG | - | chr4_3:26030568-26030587 | None:intergenic | 55.0% |
| CAGAACCTCACGGATCGAAG+CGG | + | chr4_3:26030571-26030590 | Msa0636170:CDS | 55.0% | |
| ATGTCGCCTAATCGGACGCT+GGG | - | chr4_3:26030606-26030625 | None:intergenic | 55.0% | |
| AGCGTCCGATTAGGCGACAT+CGG | + | chr4_3:26030606-26030625 | Msa0636170:CDS | 55.0% | |
| GGTCTCCGATGTCGCCTAAT+CGG | - | chr4_3:26030614-26030633 | None:intergenic | 55.0% | |
| ! | TTTTGAACTGCGGCGAGGGT+GGG | - | chr4_3:26030649-26030668 | None:intergenic | 55.0% |
| ! | ATTTTGAACTGCGGCGAGGG+TGG | - | chr4_3:26030650-26030669 | None:intergenic | 55.0% |
| ! | TGTTGCCGCTTCGATCCGTG+AGG | - | chr4_3:26030579-26030598 | None:intergenic | 60.0% |
| GATGTCGCCTAATCGGACGC+TGG | - | chr4_3:26030607-26030626 | None:intergenic | 60.0% | |
| GAGGGTGGGAATCAGAGGGT+TGG | - | chr4_3:26030635-26030654 | None:intergenic | 60.0% | |
| TTCGGCTTCGGCAACGTCTC+AGG | + | chr4_3:26030678-26030697 | Msa0636170:CDS | 60.0% | |
| CACCGACCCAGCGTCCGATT+AGG | + | chr4_3:26030597-26030616 | Msa0636170:CDS | 65.0% | |
| CGCCTAATCGGACGCTGGGT+CGG | - | chr4_3:26030602-26030621 | None:intergenic | 65.0% | |
| CGGCGAGGGTGGGAATCAGA+GGG | - | chr4_3:26030639-26030658 | None:intergenic | 65.0% | |
| GGAAGAGGTTCCGCCACCGG+AGG | + | chr4_3:26030503-26030522 | Msa0636170:CDS | 70.0% | |
| GCGGCGAGGGTGGGAATCAG+AGG | - | chr4_3:26030640-26030659 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 26030501 | 26030975 | 26030501 | ID=Msa0636170;Name=Msa0636170 |
| chr4_3 | mRNA | 26030501 | 26030975 | 26030501 | ID=Msa0636170-mRNA-1;Parent=Msa0636170;Name=Msa0636170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|2|0|137 |
| chr4_3 | exon | 26030501 | 26030699 | 26030501 | ID=Msa0636170-mRNA-1:exon:6557;Parent=Msa0636170-mRNA-1 |
| chr4_3 | exon | 26030761 | 26030975 | 26030761 | ID=Msa0636170-mRNA-1:exon:6558;Parent=Msa0636170-mRNA-1 |
| chr4_3 | CDS | 26030501 | 26030699 | 26030501 | ID=Msa0636170-mRNA-1:cds;Parent=Msa0636170-mRNA-1 |
| chr4_3 | CDS | 26030761 | 26030975 | 26030761 | ID=Msa0636170-mRNA-1:cds;Parent=Msa0636170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
