Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125480 | XP_003625821.1 | 96.875 | 160 | 5 | 0 | 51 | 210 | 1 | 160 | 1.52e-108 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125480 | sp|Q8LCY2|ISAM2_ARATH | 61.006 | 159 | 60 | 1 | 51 | 209 | 1 | 157 | 2.72e-60 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125480 | G7KQU7 | 96.875 | 160 | 5 | 0 | 51 | 210 | 1 | 160 | 7.24e-109 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0132920 | Msa1125480 | 0.833128 | 6.370130e-56 | -8.615850e-47 |
| Msa1125480 | Msa1125560 | 0.882729 | 8.156078e-71 | -8.615850e-47 |
| Msa1125480 | Msa1362590 | -0.802307 | 5.970156e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125480 | MtrunA17_Chr7g0266291 | 96.875 | 160 | 5 | 0 | 51 | 210 | 1 | 160 | 1.40e-112 | 318 |
| Msa1125480 | MtrunA17_Chr1g0178671 | 35.714 | 84 | 53 | 1 | 126 | 209 | 44 | 126 | 1.24e-13 | 65.5 |
| Msa1125480 | MtrunA17_Chr8g0383271 | 33.333 | 105 | 65 | 3 | 101 | 203 | 70 | 171 | 1.15e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125480 | AT5G03905.1 | 61.006 | 159 | 60 | 1 | 51 | 209 | 1 | 157 | 2.77e-61 | 189 |
| Msa1125480 | AT5G03905.2 | 49.038 | 104 | 51 | 1 | 51 | 154 | 1 | 102 | 8.24e-24 | 91.7 |
| Msa1125480 | AT2G16710.1 | 34.940 | 83 | 53 | 1 | 126 | 208 | 45 | 126 | 1.27e-12 | 63.2 |
| Msa1125480 | AT2G36260.1 | 38.272 | 81 | 48 | 2 | 126 | 206 | 28 | 106 | 2.36e-11 | 58.9 |
Find 49 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCTGTTCTATTATCTTT+TGG | 0.239982 | 7_3:+77000379 | Msa1125480:three_prime_UTR |
| TGTAATGGTAATAAATTATC+AGG | 0.291250 | 7_3:+77000346 | Msa1125480:three_prime_UTR |
| CAGTTGTAAAAGTTCCTTCA+TGG | 0.367289 | 7_3:+77000140 | Msa1125480:CDS |
| TGAGAAGGAAGGAATTAAAC+TGG | 0.374459 | 7_3:+76998152 | Msa1125480:CDS |
| GTAGAAACCGGTGGATGTTC+AGG | 0.378607 | 7_3:+76997969 | Msa1125480:CDS |
| CTGCAACCACCAACTGCACT+TGG | 0.390122 | 7_3:-77000120 | None:intergenic |
| GGAACAGAAAATGAAGGAAT+TGG | 0.403267 | 7_3:+76997902 | Msa1125480:intron |
| GCGGTGGAGGAAAGTGAGGA+GGG | 0.446347 | 7_3:-77000192 | None:intergenic |
| GAAACAGTAGTTAGCTATCT+TGG | 0.449743 | 7_3:+77000164 | Msa1125480:exon |
| GCACCAAAAGATAATAGAAC+AGG | 0.462067 | 7_3:-77000382 | None:intergenic |
| CTTCGTTTAAGCGTAGAAAC+CGG | 0.462646 | 7_3:+76997957 | Msa1125480:CDS |
| ATGTGGACAGGTTCCACGTC+GGG | 0.463532 | 7_3:-76997559 | None:intergenic |
| ACAGAGTCAACTCAGATGAT+AGG | 0.477854 | 7_3:+76998018 | Msa1125480:CDS |
| GATTTCACCACTTCATCAAA+CGG | 0.497093 | 7_3:-76997279 | None:intergenic |
| CAGCTTCAAGATGGAGGAAG+AGG | 0.497142 | 7_3:+76997160 | None:intergenic |
| GTAACATACAGTTGTTGTAA+TGG | 0.499420 | 7_3:+77000331 | Msa1125480:three_prime_UTR |
| TCCACCGGATGATGATTCAC+TGG | 0.509565 | 7_3:-76997928 | None:intergenic |
| AGATGTGGCATGGTGAAGAA+TGG | 0.513237 | 7_3:-76997524 | None:intergenic |
| ATCTGAGCCGTTTGATGAAG+TGG | 0.520388 | 7_3:+76997272 | Msa1125480:CDS |
| TGTCGAGGAGCTAATCCGTT+CGG | 0.527854 | 7_3:+76998224 | Msa1125480:CDS |
| AATAAACATTTGAGCGGTGG+AGG | 0.528089 | 7_3:-77000205 | None:intergenic |
| GGTTCCACGTCGGGAGAAGA+AGG | 0.530859 | 7_3:-76997550 | None:intergenic |
| TCGAAGACTCGCTCCATCGT+TGG | 0.532351 | 7_3:+76997441 | Msa1125480:CDS |
| ATTTCATACGACTTTGTGAA+AGG | 0.535942 | 7_3:+76998186 | Msa1125480:CDS |
| TTCACCTTCTTCTCCCGACG+TGG | 0.537237 | 7_3:+76997546 | Msa1125480:CDS |
| ACGTACTTGCAGCTTCAAGA+TGG | 0.543743 | 7_3:+76997151 | None:intergenic |
| AGCGGTGGAGGAAAGTGAGG+AGG | 0.553032 | 7_3:-77000193 | None:intergenic |
| GATGCCAGTGAATCATCATC+CGG | 0.561795 | 7_3:+76997924 | Msa1125480:CDS |
| TGAAATCGTGCTGCCAACGA+TGG | 0.563513 | 7_3:-76997454 | None:intergenic |
| TAACTACTGTTTCACCATGA+AGG | 0.567622 | 7_3:-77000154 | None:intergenic |
| CGTTGGCAGCACGATTTCAA+CGG | 0.568585 | 7_3:+76997458 | Msa1125480:CDS |
| GAATGTGGAACAGAAAATGA+AGG | 0.569964 | 7_3:+76997896 | Msa1125480:intron |
| CATAGTATAATCTAGTTCGA+CGG | 0.575888 | 7_3:-77000228 | None:intergenic |
| TGCAACCACCAACTGCACTT+GGG | 0.581343 | 7_3:-77000119 | None:intergenic |
| CGGAATAAACATTTGAGCGG+TGG | 0.596422 | 7_3:-77000208 | None:intergenic |
| CTGAAATCCTGAACATCCAC+CGG | 0.596753 | 7_3:-76997976 | None:intergenic |
| CGGTGGAGGAAAGTGAGGAG+GGG | 0.602223 | 7_3:-77000191 | None:intergenic |
| ACGGAGAACCCAAGTGCAGT+TGG | 0.605079 | 7_3:+77000111 | Msa1125480:CDS |
| GAGAACCCAAGTGCAGTTGG+TGG | 0.609330 | 7_3:+77000114 | Msa1125480:CDS |
| CGCAACTGTTGATTATGTCG+AGG | 0.618120 | 7_3:+76998209 | Msa1125480:CDS |
| TTGAGCGGTGGAGGAAAGTG+AGG | 0.625815 | 7_3:-77000196 | None:intergenic |
| TACTTGCAGCTTCAAGATGG+AGG | 0.626519 | 7_3:+76997154 | None:intergenic |
| GACTTACTATGAAAGCCGAA+CGG | 0.642245 | 7_3:-76998239 | None:intergenic |
| CGTTTAAGCGTAGAAACCGG+TGG | 0.643374 | 7_3:+76997960 | Msa1125480:CDS |
| GGGAGAAGAAGGTGAAGATG+TGG | 0.644162 | 7_3:-76997539 | None:intergenic |
| AAGAAGGTGAAGATGTGGCA+TGG | 0.649445 | 7_3:-76997534 | None:intergenic |
| GCCAGTGAATCATCATCCGG+TGG | 0.654118 | 7_3:+76997927 | Msa1125480:CDS |
| CGACGGAATAAACATTTGAG+CGG | 0.683940 | 7_3:-77000211 | None:intergenic |
| TATGTGGACAGGTTCCACGT+CGG | 0.705696 | 7_3:-76997560 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTACAG+AGG | - | chr7_3:76997347-76997366 | None:intergenic | 10.0% |
| !! | AGTAAATACATTTCAAAATT+TGG | + | chr7_3:76997662-76997681 | Msa1125480:intron | 15.0% |
| !! | ATCAATTACATTACATATAA+TGG | - | chr7_3:76997852-76997871 | None:intergenic | 15.0% |
| !! | TTATAATTTATAAAAGACAC+TGG | - | chr7_3:76998101-76998120 | None:intergenic | 15.0% |
| !!! | ACCTTTTTATAATTTTAGTA+TGG | + | chr7_3:76998366-76998385 | Msa1125480:intron | 15.0% |
| !! | ACCATACTAAAATTATAAAA+AGG | - | chr7_3:76998370-76998389 | None:intergenic | 15.0% |
| !!! | TTTCAATACCTTTTAATTTT+GGG | - | chr7_3:76999651-76999670 | None:intergenic | 15.0% |
| !!! | TTTTCAATACCTTTTAATTT+TGG | - | chr7_3:76999652-76999671 | None:intergenic | 15.0% |
| !!! | CACAATTTTTCTGAATAAAA+GGG | - | chr7_3:76997239-76997258 | None:intergenic | 20.0% |
| !!! | ACACAATTTTTCTGAATAAA+AGG | - | chr7_3:76997240-76997259 | None:intergenic | 20.0% |
| !! | TTTATTCAGAAAAATTGTGT+TGG | + | chr7_3:76997240-76997259 | Msa1125480:CDS | 20.0% |
| !! | TACATTTCAAAATTTGGATT+AGG | + | chr7_3:76997668-76997687 | Msa1125480:intron | 20.0% |
| !!! | ATTTCAGTATGCTTTTAATT+TGG | + | chr7_3:76997992-76998011 | Msa1125480:CDS | 20.0% |
| !! | TGAAAAAAAATTCTTGAACA+GGG | - | chr7_3:76998846-76998865 | None:intergenic | 20.0% |
| !! | TTGAAAAAAAATTCTTGAAC+AGG | - | chr7_3:76998847-76998866 | None:intergenic | 20.0% |
| !! | TTTCAAAAAAAAAAACAGAG+TGG | + | chr7_3:76998861-76998880 | Msa1125480:intron | 20.0% |
| !! | TTCAAAAAAAAAAACAGAGT+GGG | + | chr7_3:76998862-76998881 | Msa1125480:intron | 20.0% |
| !! | TTGTAAAATGTATATACTCA+TGG | - | chr7_3:76998914-76998933 | None:intergenic | 20.0% |
| !! | TAAAACTTAACAACATATTC+AGG | + | chr7_3:76998962-76998981 | Msa1125480:intron | 20.0% |
| !! | TTCATCCTGAAAAATTTATA+CGG | - | chr7_3:76999031-76999050 | None:intergenic | 20.0% |
| !! | ATATGAAACCAAAATGTATA+AGG | - | chr7_3:76999130-76999149 | None:intergenic | 20.0% |
| !!! | TTATTTTGGTTTGAACTTAA+TGG | - | chr7_3:76999289-76999308 | None:intergenic | 20.0% |
| !! | TACTTAATAACAAAAGCAAA+GGG | - | chr7_3:76999706-76999725 | None:intergenic | 20.0% |
| !! | ATACTTAATAACAAAAGCAA+AGG | - | chr7_3:76999707-76999726 | None:intergenic | 20.0% |
| !!! | ATCATTTTCGTAATATAAGA+AGG | + | chr7_3:76999841-76999860 | Msa1125480:intron | 20.0% |
| !! | TTTATAAGTTATGACATTGA+AGG | + | chr7_3:77000034-77000053 | Msa1125480:intron | 20.0% |
| !! | AAAATAAATGTAAGTTTGTC+TGG | - | chr7_3:77000072-77000091 | None:intergenic | 20.0% |
| !!! | ACAAACTTACATTTATTTTC+TGG | + | chr7_3:77000073-77000092 | Msa1125480:intron | 20.0% |
| !!! | AATCAATCAATTGTTTTTTG+AGG | - | chr7_3:77000270-77000289 | None:intergenic | 20.0% |
| !! | TGTAATGGTAATAAATTATC+AGG | + | chr7_3:77000346-77000365 | Msa1125480:three_prime_UTR | 20.0% |
| ! | AAAAAGAGCTTATAAGATTC+TGG | - | chr7_3:76997486-76997505 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTACAAACAAGT+TGG | - | chr7_3:76997876-76997895 | None:intergenic | 25.0% |
| ! | TTTGTACAACTTAATGAATG+TGG | + | chr7_3:76997881-76997900 | Msa1125480:intron | 25.0% |
| !!! | ATTTTAGTATGGTACTAATC+AGG | + | chr7_3:76998377-76998396 | Msa1125480:intron | 25.0% |
| ! | AAATTGTTAATGTACACTCA+TGG | - | chr7_3:76998746-76998765 | None:intergenic | 25.0% |
| ! | AGGTTCAGATTCAAAATATA+AGG | + | chr7_3:76998982-76999001 | Msa1125480:intron | 25.0% |
| ! | AAAACTTCAAACATTGAACA+GGG | - | chr7_3:76999008-76999027 | None:intergenic | 25.0% |
| !! | GTTTTCCGTATAAATTTTTC+AGG | + | chr7_3:76999023-76999042 | Msa1125480:intron | 25.0% |
| !!! | AAAAACCTAAAAGCATCTAA+AGG | - | chr7_3:76999100-76999119 | None:intergenic | 25.0% |
| ! | ATGTATCATTTCTTGTTAAG+TGG | + | chr7_3:76999185-76999204 | Msa1125480:intron | 25.0% |
| ! | AAATTACAAAACTGACATGT+GGG | - | chr7_3:76999421-76999440 | None:intergenic | 25.0% |
| ! | TATGTTGCTCTACATAATTT+AGG | - | chr7_3:76999472-76999491 | None:intergenic | 25.0% |
| ! | TAAATTATGTAGAGCAACAT+AGG | + | chr7_3:76999471-76999490 | Msa1125480:intron | 25.0% |
| ! | CATTCTTTAATCAAAGTTCA+TGG | - | chr7_3:76999523-76999542 | None:intergenic | 25.0% |
| ! | CTATTTAGTTAGAGTAACAT+GGG | - | chr7_3:76999586-76999605 | None:intergenic | 25.0% |
| ! | TTAATCTCACATAAATAGAG+CGG | - | chr7_3:76999616-76999635 | None:intergenic | 25.0% |
| !! | AGTTTTCACCCAAAATTAAA+AGG | + | chr7_3:76999640-76999659 | Msa1125480:intron | 25.0% |
| !!! | TATTTTCTGGTTTCATTTTC+AGG | + | chr7_3:77000086-77000105 | Msa1125480:intron | 25.0% |
| ! | TCTCTCAATTGCTTGTTAAT+TGG | + | chr7_3:76997614-76997633 | Msa1125480:intron | 30.0% |
| TTATGACAGTTATGCAGATA+GGG | + | chr7_3:76997755-76997774 | Msa1125480:intron | 30.0% | |
| AGTCAGATTTCAATGTTGAT+AGG | + | chr7_3:76998056-76998075 | Msa1125480:intron | 30.0% | |
| ATTTCATACGACTTTGTGAA+AGG | + | chr7_3:76998186-76998205 | Msa1125480:CDS | 30.0% | |
| AAGAATGGGTATGTTATGTT+AGG | + | chr7_3:76998708-76998727 | Msa1125480:intron | 30.0% | |
| ! | AACCATATTCAAGTTCAGAT+TGG | + | chr7_3:76998802-76998821 | Msa1125480:intron | 30.0% |
| TTCCAATCTGAACTTGAATA+TGG | - | chr7_3:76998807-76998826 | None:intergenic | 30.0% | |
| ATTGGAATCCAAAATCAACA+AGG | + | chr7_3:76998820-76998839 | Msa1125480:intron | 30.0% | |
| GAAAACTTCAAACATTGAAC+AGG | - | chr7_3:76999009-76999028 | None:intergenic | 30.0% | |
| ! | TTACCATGCCTTATACATTT+TGG | + | chr7_3:76999119-76999138 | Msa1125480:intron | 30.0% |
| AAACCAAAATGTATAAGGCA+TGG | - | chr7_3:76999125-76999144 | None:intergenic | 30.0% | |
| TAACAAGAAATGATACATGC+TGG | - | chr7_3:76999183-76999202 | None:intergenic | 30.0% | |
| !! | TAATGTTGGTTACATTTTCC+AGG | - | chr7_3:76999331-76999350 | None:intergenic | 30.0% |
| ! | GAAGCACTTTATTCTAATGT+TGG | - | chr7_3:76999345-76999364 | None:intergenic | 30.0% |
| CAAATTACAAAACTGACATG+TGG | - | chr7_3:76999422-76999441 | None:intergenic | 30.0% | |
| GCTATTTAGTTAGAGTAACA+TGG | - | chr7_3:76999587-76999606 | None:intergenic | 30.0% | |
| TACTCTAACTAAATAGCCTA+AGG | + | chr7_3:76999590-76999609 | Msa1125480:intron | 30.0% | |
| ! | CAATGATGTTTTGTGTTTGA+TGG | + | chr7_3:76999817-76999836 | Msa1125480:intron | 30.0% |
| ! | CATAGTATAATCTAGTTCGA+CGG | - | chr7_3:77000231-77000250 | None:intergenic | 30.0% |
| GTAACATACAGTTGTTGTAA+TGG | + | chr7_3:77000331-77000350 | Msa1125480:three_prime_UTR | 30.0% | |
| ! | TAGCCTGTTCTATTATCTTT+TGG | + | chr7_3:77000379-77000398 | Msa1125480:three_prime_UTR | 30.0% |
| !! | TCAGAAAAATTGTGTTGGCT+TGG | + | chr7_3:76997245-76997264 | Msa1125480:CDS | 35.0% |
| GATTTCACCACTTCATCAAA+CGG | - | chr7_3:76997282-76997301 | None:intergenic | 35.0% | |
| CTTCAAACTAACCTAACTCA+CGG | - | chr7_3:76997309-76997328 | None:intergenic | 35.0% | |
| !! | TTGGATTAGGTTTTCGTTGA+TGG | + | chr7_3:76997681-76997700 | Msa1125480:intron | 35.0% |
| ! | TATGAGAAGCATATGCGATA+AGG | - | chr7_3:76997708-76997727 | None:intergenic | 35.0% |
| GTTATGACAGTTATGCAGAT+AGG | + | chr7_3:76997754-76997773 | Msa1125480:intron | 35.0% | |
| GAATGTGGAACAGAAAATGA+AGG | + | chr7_3:76997896-76997915 | Msa1125480:intron | 35.0% | |
| GGAACAGAAAATGAAGGAAT+TGG | + | chr7_3:76997902-76997921 | Msa1125480:intron | 35.0% | |
| !! | TAAACGAAGCATTTTTCCAC+CGG | - | chr7_3:76997946-76997965 | None:intergenic | 35.0% |
| TTGAAATCTGACTATCCAAG+TGG | - | chr7_3:76998049-76998068 | None:intergenic | 35.0% | |
| !! | TATTGCCAGAGTTTTTGAGA+AGG | + | chr7_3:76998137-76998156 | Msa1125480:intron | 35.0% |
| TGAGAAGGAAGGAATTAAAC+TGG | + | chr7_3:76998152-76998171 | Msa1125480:CDS | 35.0% | |
| ATCAGGTAACGAAGTTTCTT+AGG | + | chr7_3:76998394-76998413 | Msa1125480:intron | 35.0% | |
| TCCTAAAATCTCAAGCTGAT+AGG | - | chr7_3:76998548-76998567 | None:intergenic | 35.0% | |
| !! | CTTGAGATTTTAGGAGAGTT+GGG | + | chr7_3:76998553-76998572 | Msa1125480:intron | 35.0% |
| TACCCATTCTTGTAAAGAGT+GGG | - | chr7_3:76998699-76998718 | None:intergenic | 35.0% | |
| ATACCCATTCTTGTAAAGAG+TGG | - | chr7_3:76998700-76998719 | None:intergenic | 35.0% | |
| ! | TGGACGATTTTATATCCCAA+CGG | - | chr7_3:76998894-76998913 | None:intergenic | 35.0% |
| GATGAACCTGTTGTATATAG+AGG | + | chr7_3:76999045-76999064 | Msa1125480:intron | 35.0% | |
| AAGTCACCTCTATATACAAC+AGG | - | chr7_3:76999054-76999073 | None:intergenic | 35.0% | |
| !! | ATCTAAAGGCATTGTTTGGA+TGG | - | chr7_3:76999086-76999105 | None:intergenic | 35.0% |
| !! | AAGCATCTAAAGGCATTGTT+TGG | - | chr7_3:76999090-76999109 | None:intergenic | 35.0% |
| ! | CAATGCCTTTAGATGCTTTT+AGG | + | chr7_3:76999092-76999111 | Msa1125480:intron | 35.0% |
| AAGTGTGCCAAAAACCTAAA+CGG | - | chr7_3:76999266-76999285 | None:intergenic | 35.0% | |
| !!! | CTCTAGTGGTAGCTTTATTT+TGG | - | chr7_3:76999303-76999322 | None:intergenic | 35.0% |
| AAGTGCTTCTTGCAAAATTG+TGG | + | chr7_3:76999356-76999375 | Msa1125480:intron | 35.0% | |
| CATAGGTACTTCTGATCTTA+AGG | + | chr7_3:76999488-76999507 | Msa1125480:intron | 35.0% | |
| TCACATCGACATACAATCTA+AGG | - | chr7_3:76999920-76999939 | None:intergenic | 35.0% | |
| ACTGTGATATCCAATGGTAT+TGG | + | chr7_3:76999959-76999978 | Msa1125480:intron | 35.0% | |
| ! | GATATCCAATGGTATTGGAA+TGG | + | chr7_3:76999964-76999983 | Msa1125480:intron | 35.0% |
| ACATTCCATTCCAATACCAT+TGG | - | chr7_3:76999972-76999991 | None:intergenic | 35.0% | |
| CAGTTGTAAAAGTTCCTTCA+TGG | + | chr7_3:77000140-77000159 | Msa1125480:CDS | 35.0% | |
| TAACTACTGTTTCACCATGA+AGG | - | chr7_3:77000157-77000176 | None:intergenic | 35.0% | |
| GAAACAGTAGTTAGCTATCT+TGG | + | chr7_3:77000164-77000183 | Msa1125480:exon | 35.0% | |
| GCACCAAAAGATAATAGAAC+AGG | - | chr7_3:77000385-77000404 | None:intergenic | 35.0% | |
| TGAAATCTGAACCGTGAGTT+AGG | + | chr7_3:76997295-76997314 | Msa1125480:intron | 40.0% | |
| AGAAGATCCTGAGACATCAA+TGG | + | chr7_3:76997383-76997402 | Msa1125480:intron | 40.0% | |
| AATCACACCATTGATGTCTC+AGG | - | chr7_3:76997393-76997412 | None:intergenic | 40.0% | |
| AGTTCATGTTGTACTGTACC+CGG | + | chr7_3:76997809-76997828 | Msa1125480:intron | 40.0% | |
| CTTCGTTTAAGCGTAGAAAC+CGG | + | chr7_3:76997957-76997976 | Msa1125480:CDS | 40.0% | |
| ACAGAGTCAACTCAGATGAT+AGG | + | chr7_3:76998018-76998037 | Msa1125480:CDS | 40.0% | |
| AGATGATAGGTACTACCACT+TGG | + | chr7_3:76998031-76998050 | Msa1125480:intron | 40.0% | |
| GACACTGGTGTATCAACATA+TGG | - | chr7_3:76998086-76998105 | None:intergenic | 40.0% | |
| TCCTTCCTTCTCAAAAACTC+TGG | - | chr7_3:76998145-76998164 | None:intergenic | 40.0% | |
| GACTTACTATGAAAGCCGAA+CGG | - | chr7_3:76998242-76998261 | None:intergenic | 40.0% | |
| ACTTGTAACCATGTGTATGC+TGG | + | chr7_3:76998268-76998287 | Msa1125480:intron | 40.0% | |
| AATCTCAAGCTGATAGGCAA+AGG | - | chr7_3:76998542-76998561 | None:intergenic | 40.0% | |
| ! | GCCTATCAGCTTGAGATTTT+AGG | + | chr7_3:76998544-76998563 | Msa1125480:intron | 40.0% |
| !! | GCTTGAGATTTTAGGAGAGT+TGG | + | chr7_3:76998552-76998571 | Msa1125480:intron | 40.0% |
| AAGCCCACTCTTTACAAGAA+TGG | + | chr7_3:76998693-76998712 | Msa1125480:intron | 40.0% | |
| AGCCCACTCTTTACAAGAAT+GGG | + | chr7_3:76998694-76998713 | Msa1125480:intron | 40.0% | |
| TTCAAAGCAAAAGTTCCGTC+AGG | - | chr7_3:76999227-76999246 | None:intergenic | 40.0% | |
| CCAAAAACCTAAACGGTGTT+GGG | - | chr7_3:76999259-76999278 | None:intergenic | 40.0% | |
| ! | TTTTCCAGGCATATCTCTAG+TGG | - | chr7_3:76999317-76999336 | None:intergenic | 40.0% |
| CTTGCAAAATTGTGGTCAAG+AGG | + | chr7_3:76999364-76999383 | Msa1125480:intron | 40.0% | |
| ATATCACCAAACAGTGGAGA+AGG | - | chr7_3:76999563-76999582 | None:intergenic | 40.0% | |
| CCAAATAAGTGAATCACAGC+AGG | - | chr7_3:76999755-76999774 | None:intergenic | 40.0% | |
| CCTGCTGTGATTCACTTATT+TGG | + | chr7_3:76999752-76999771 | Msa1125480:intron | 40.0% | |
| GATGCAACTGTGATATCCAA+TGG | + | chr7_3:76999953-76999972 | Msa1125480:intron | 40.0% | |
| !!! | CTGGTTTCATTTTCAGGTGA+CGG | + | chr7_3:77000092-77000111 | Msa1125480:intron | 40.0% |
| AATAAACATTTGAGCGGTGG+AGG | - | chr7_3:77000208-77000227 | None:intergenic | 40.0% | |
| CGACGGAATAAACATTTGAG+CGG | - | chr7_3:77000214-77000233 | None:intergenic | 40.0% | |
| ATCTGAGCCGTTTGATGAAG+TGG | + | chr7_3:76997272-76997291 | Msa1125480:CDS | 45.0% | |
| AGATGTGGCATGGTGAAGAA+TGG | - | chr7_3:76997527-76997546 | None:intergenic | 45.0% | |
| AAGAAGGTGAAGATGTGGCA+TGG | - | chr7_3:76997537-76997556 | None:intergenic | 45.0% | |
| ! | CAGTTTTCGGTTATGTGGAC+AGG | - | chr7_3:76997574-76997593 | None:intergenic | 45.0% |
| ! | GAACGCAGTTTTCGGTTATG+TGG | - | chr7_3:76997579-76997598 | None:intergenic | 45.0% |
| ! | GCATACACGAACGCAGTTTT+CGG | - | chr7_3:76997587-76997606 | None:intergenic | 45.0% |
| GTTCATGTTGTACTGTACCC+GGG | + | chr7_3:76997810-76997829 | Msa1125480:intron | 45.0% | |
| GATGCCAGTGAATCATCATC+CGG | + | chr7_3:76997924-76997943 | Msa1125480:CDS | 45.0% | |
| CTGAAATCCTGAACATCCAC+CGG | - | chr7_3:76997979-76997998 | None:intergenic | 45.0% | |
| !! | GCCAGAGTTTTTGAGAAGGA+AGG | + | chr7_3:76998141-76998160 | Msa1125480:intron | 45.0% |
| ! | CGCAACTGTTGATTATGTCG+AGG | + | chr7_3:76998209-76998228 | Msa1125480:CDS | 45.0% |
| CACAAACACCAGCATACACA+TGG | - | chr7_3:76998279-76998298 | None:intergenic | 45.0% | |
| CATGTGTATGCTGGTGTTTG+TGG | + | chr7_3:76998277-76998296 | Msa1125480:intron | 45.0% | |
| TGCACAGGAATCACAGAGAA+AGG | - | chr7_3:76998334-76998353 | None:intergenic | 45.0% | |
| GATTCCTGTGCACTACAACA+TGG | + | chr7_3:76998342-76998361 | Msa1125480:intron | 45.0% | |
| !! | ATTTTAGGAGAGTTGGGCCT+TGG | + | chr7_3:76998559-76998578 | Msa1125480:intron | 45.0% |
| AATCCACTCTCCAGTTACCA+AGG | - | chr7_3:76998579-76998598 | None:intergenic | 45.0% | |
| !!! | GAACAGGGCCTTGTTGATTT+TGG | - | chr7_3:76998831-76998850 | None:intergenic | 45.0% |
| TGATGCAATTGCTCTCCTGA+CGG | + | chr7_3:76999209-76999228 | Msa1125480:intron | 45.0% | |
| !! | CCCAACACCGTTTAGGTTTT+TGG | + | chr7_3:76999256-76999275 | Msa1125480:intron | 45.0% |
| GCCAAAAACCTAAACGGTGT+TGG | - | chr7_3:76999260-76999279 | None:intergenic | 45.0% | |
| TTGACACCTTCTCCACTGTT+TGG | + | chr7_3:76999554-76999573 | Msa1125480:intron | 45.0% | |
| CATGGGATATCACCAAACAG+TGG | - | chr7_3:76999569-76999588 | None:intergenic | 45.0% | |
| CACATAAATAGAGCGGCCTT+AGG | - | chr7_3:76999609-76999628 | None:intergenic | 45.0% | |
| AAGTGAATCACAGCAGGCTA+TGG | - | chr7_3:76999749-76999768 | None:intergenic | 45.0% | |
| CATTAACACGCCCTTCAAAG+CGG | + | chr7_3:76999866-76999885 | Msa1125480:intron | 45.0% | |
| !! | TGCGTTTTGAACCAAGTTCG+AGG | + | chr7_3:76999893-76999912 | Msa1125480:intron | 45.0% |
| CAATCTAAGGACCTCGAACT+TGG | - | chr7_3:76999907-76999926 | None:intergenic | 45.0% | |
| TGTCATGAGTGTGCGAGAAA+AGG | + | chr7_3:76999989-77000008 | Msa1125480:intron | 45.0% | |
| GTCATGAGTGTGCGAGAAAA+GGG | + | chr7_3:76999990-77000009 | Msa1125480:intron | 45.0% | |
| CGGAATAAACATTTGAGCGG+TGG | - | chr7_3:77000211-77000230 | None:intergenic | 45.0% | |
| TGAAATCGTGCTGCCAACGA+TGG | - | chr7_3:76997457-76997476 | None:intergenic | 50.0% | |
| CGTTGGCAGCACGATTTCAA+CGG | + | chr7_3:76997458-76997477 | Msa1125480:CDS | 50.0% | |
| GGGAGAAGAAGGTGAAGATG+TGG | - | chr7_3:76997542-76997561 | None:intergenic | 50.0% | |
| TATGTGGACAGGTTCCACGT+CGG | - | chr7_3:76997563-76997582 | None:intergenic | 50.0% | |
| TGTTGTACTGTACCCGGGTT+AGG | + | chr7_3:76997815-76997834 | Msa1125480:intron | 50.0% | |
| GTACGCATAGTTCCTAACCC+GGG | - | chr7_3:76997830-76997849 | None:intergenic | 50.0% | |
| GGTACGCATAGTTCCTAACC+CGG | - | chr7_3:76997831-76997850 | None:intergenic | 50.0% | |
| TCCACCGGATGATGATTCAC+TGG | - | chr7_3:76997931-76997950 | None:intergenic | 50.0% | |
| CGTTTAAGCGTAGAAACCGG+TGG | + | chr7_3:76997960-76997979 | Msa1125480:CDS | 50.0% | |
| GTAGAAACCGGTGGATGTTC+AGG | + | chr7_3:76997969-76997988 | Msa1125480:CDS | 50.0% | |
| TGTCGAGGAGCTAATCCGTT+CGG | + | chr7_3:76998224-76998243 | Msa1125480:CDS | 50.0% | |
| GGTTCCATGTTGTAGTGCAC+AGG | - | chr7_3:76998349-76998368 | None:intergenic | 50.0% | |
| ACAGAGTGGGTATGTTCCGT+TGG | + | chr7_3:76998875-76998894 | Msa1125480:intron | 50.0% | |
| CAGAGTGGGTATGTTCCGTT+GGG | + | chr7_3:76998876-76998895 | Msa1125480:intron | 50.0% | |
| ACTCTCTCCCAACACCGTTT+AGG | + | chr7_3:76999249-76999268 | Msa1125480:intron | 50.0% | |
| GCTACCACTAGAGATATGCC+TGG | + | chr7_3:76999310-76999329 | Msa1125480:intron | 50.0% | |
| ACAAAACTGACATGTGGGCC+TGG | - | chr7_3:76999416-76999435 | None:intergenic | 50.0% | |
| !! | AACGCACATGCCGCTTTGAA+GGG | - | chr7_3:76999879-76999898 | None:intergenic | 50.0% |
| !! | AAACGCACATGCCGCTTTGA+AGG | - | chr7_3:76999880-76999899 | None:intergenic | 50.0% |
| TGCAACCACCAACTGCACTT+GGG | - | chr7_3:77000122-77000141 | None:intergenic | 50.0% | |
| TCGAAGACTCGCTCCATCGT+TGG | + | chr7_3:76997441-76997460 | Msa1125480:CDS | 55.0% | |
| TTCACCTTCTTCTCCCGACG+TGG | + | chr7_3:76997546-76997565 | Msa1125480:CDS | 55.0% | |
| ATGTGGACAGGTTCCACGTC+GGG | - | chr7_3:76997562-76997581 | None:intergenic | 55.0% | |
| GCCAGTGAATCATCATCCGG+TGG | + | chr7_3:76997927-76997946 | Msa1125480:CDS | 55.0% | |
| ! | GAGAGTTGGGCCTTGGTAAC+TGG | + | chr7_3:76998566-76998585 | Msa1125480:intron | 55.0% |
| GGTTTACGTTGCAGGGCTAC+AGG | - | chr7_3:76999395-76999414 | None:intergenic | 55.0% | |
| GTAGCCCTGCAACGTAAACC+AGG | + | chr7_3:76999395-76999414 | Msa1125480:intron | 55.0% | |
| TGGGCCTGGTTTACGTTGCA+GGG | - | chr7_3:76999402-76999421 | None:intergenic | 55.0% | |
| TGTGCGAGAAAAGGGTCGTG+TGG | + | chr7_3:76999998-77000017 | Msa1125480:intron | 55.0% | |
| ACGGAGAACCCAAGTGCAGT+TGG | + | chr7_3:77000111-77000130 | Msa1125480:CDS | 55.0% | |
| GAGAACCCAAGTGCAGTTGG+TGG | + | chr7_3:77000114-77000133 | Msa1125480:CDS | 55.0% | |
| CTGCAACCACCAACTGCACT+TGG | - | chr7_3:77000123-77000142 | None:intergenic | 55.0% | |
| TTGAGCGGTGGAGGAAAGTG+AGG | - | chr7_3:77000199-77000218 | None:intergenic | 55.0% | |
| GGTTCCACGTCGGGAGAAGA+AGG | - | chr7_3:76997553-76997572 | None:intergenic | 60.0% | |
| ! | GGGCCTTGGTAACTGGAGAG+TGG | + | chr7_3:76998573-76998592 | Msa1125480:intron | 60.0% |
| GTGGGCCTGGTTTACGTTGC+AGG | - | chr7_3:76999403-76999422 | None:intergenic | 60.0% | |
| CGGTGGAGGAAAGTGAGGAG+GGG | - | chr7_3:77000194-77000213 | None:intergenic | 60.0% | |
| GCGGTGGAGGAAAGTGAGGA+GGG | - | chr7_3:77000195-77000214 | None:intergenic | 60.0% | |
| AGCGGTGGAGGAAAGTGAGG+AGG | - | chr7_3:77000196-77000215 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 76997162 | 77000420 | 76997162 | ID=Msa1125480;Name=Msa1125480 |
| chr7_3 | mRNA | 76997162 | 77000420 | 76997162 | ID=Msa1125480-mRNA-1;Parent=Msa1125480;Name=Msa1125480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.75|0.6|0.8|0.5|0.6|5|247|210 |
| chr7_3 | exon | 76997162 | 76997307 | 76997162 | ID=Msa1125480-mRNA-1:exon:21113;Parent=Msa1125480-mRNA-1 |
| chr7_3 | exon | 76997420 | 76997600 | 76997420 | ID=Msa1125480-mRNA-1:exon:21114;Parent=Msa1125480-mRNA-1 |
| chr7_3 | exon | 76997909 | 76998039 | 76997909 | ID=Msa1125480-mRNA-1:exon:21115;Parent=Msa1125480-mRNA-1 |
| chr7_3 | exon | 76998146 | 76998254 | 76998146 | ID=Msa1125480-mRNA-1:exon:21116;Parent=Msa1125480-mRNA-1 |
| chr7_3 | exon | 77000108 | 77000420 | 77000108 | ID=Msa1125480-mRNA-1:exon:21117;Parent=Msa1125480-mRNA-1 |
| chr7_3 | CDS | 76997162 | 76997307 | 76997162 | ID=Msa1125480-mRNA-1:cds;Parent=Msa1125480-mRNA-1 |
| chr7_3 | CDS | 76997420 | 76997600 | 76997420 | ID=Msa1125480-mRNA-1:cds;Parent=Msa1125480-mRNA-1 |
| chr7_3 | CDS | 76997909 | 76998039 | 76997909 | ID=Msa1125480-mRNA-1:cds;Parent=Msa1125480-mRNA-1 |
| chr7_3 | CDS | 76998146 | 76998254 | 76998146 | ID=Msa1125480-mRNA-1:cds;Parent=Msa1125480-mRNA-1 |
| chr7_3 | CDS | 77000108 | 77000173 | 77000108 | ID=Msa1125480-mRNA-1:cds;Parent=Msa1125480-mRNA-1 |
| chr7_3 | three_prime_UTR | 77000174 | 77000420 | 77000174 | ID=Msa1125480-mRNA-1:three_prime_utr;Parent=Msa1125480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
