Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125560 | XP_003625821.1 | 96.250 | 160 | 6 | 0 | 51 | 210 | 1 | 160 | 2.65e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125560 | sp|Q8LCY2|ISAM2_ARATH | 60.377 | 159 | 61 | 1 | 51 | 209 | 1 | 157 | 3.86e-60 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125560 | G7KQU7 | 96.250 | 160 | 6 | 0 | 51 | 210 | 1 | 160 | 1.27e-108 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0705130 | Msa1125560 | 0.812668 | 3.775256e-51 | -8.615850e-47 |
| Msa0756440 | Msa1125560 | 0.808015 | 3.812053e-50 | -8.615850e-47 |
| Msa0833910 | Msa1125560 | 0.801103 | 1.054219e-48 | -8.615850e-47 |
| Msa0835550 | Msa1125560 | 0.816473 | 5.430572e-52 | -8.615850e-47 |
| Msa0132920 | Msa1125560 | 0.837986 | 3.759812e-57 | -8.615850e-47 |
| Msa0143250 | Msa1125560 | 0.874506 | 6.401747e-68 | -8.615850e-47 |
| Msa0456480 | Msa1125560 | 0.800735 | 1.253622e-48 | -8.615850e-47 |
| Msa0314980 | Msa1125560 | 0.805792 | 1.125229e-49 | -8.615850e-47 |
| Msa1124440 | Msa1125560 | 0.805686 | 1.184186e-49 | -8.615850e-47 |
| Msa1125480 | Msa1125560 | 0.882729 | 8.156078e-71 | -8.615850e-47 |
| Msa1125560 | Msa1451780 | 0.804572 | 2.026026e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125560 | MtrunA17_Chr7g0266291 | 96.250 | 160 | 6 | 0 | 51 | 210 | 1 | 160 | 2.44e-112 | 317 |
| Msa1125560 | MtrunA17_Chr1g0178671 | 34.524 | 84 | 54 | 1 | 126 | 209 | 44 | 126 | 1.90e-13 | 65.1 |
| Msa1125560 | MtrunA17_Chr8g0383271 | 32.381 | 105 | 66 | 3 | 101 | 203 | 70 | 171 | 1.90e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125560 | AT5G03905.1 | 60.377 | 159 | 61 | 1 | 51 | 209 | 1 | 157 | 3.93e-61 | 188 |
| Msa1125560 | AT5G03905.2 | 48.077 | 104 | 52 | 1 | 51 | 154 | 1 | 102 | 1.28e-23 | 91.3 |
| Msa1125560 | AT2G16710.1 | 33.735 | 83 | 54 | 1 | 126 | 208 | 45 | 126 | 1.90e-12 | 62.8 |
| Msa1125560 | AT2G36260.1 | 37.037 | 81 | 49 | 2 | 126 | 206 | 28 | 106 | 3.09e-11 | 58.5 |
Find 49 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCTGTTCTATTATCTTT+TGG | 0.239982 | 7_3:+77039674 | Msa1125560:three_prime_UTR |
| TGTAATGGTAATAAATTATC+AGG | 0.291250 | 7_3:+77039641 | Msa1125560:three_prime_UTR |
| CAGTTGTAAAAGTTCCTTCA+TGG | 0.367289 | 7_3:+77039435 | Msa1125560:CDS |
| TGAGAAGGAAGGAATTAAAC+TGG | 0.374459 | 7_3:+77037446 | Msa1125560:CDS |
| CTGCAACCACCAACTGCACT+TGG | 0.390122 | 7_3:-77039415 | None:intergenic |
| GGAACAGAAAATGAAGGAAT+TGG | 0.403267 | 7_3:+77037196 | Msa1125560:intron |
| ATAGAAACCGGTGGATGTTC+AGG | 0.446339 | 7_3:+77037263 | Msa1125560:CDS |
| GCGGTGGAGGAAAGTGAGGA+GGG | 0.446347 | 7_3:-77039487 | None:intergenic |
| GAAACAGTAGTTAGCTATCT+TGG | 0.449743 | 7_3:+77039459 | Msa1125560:exon |
| GCACCAAAAGATAATAGAAC+AGG | 0.462067 | 7_3:-77039677 | None:intergenic |
| ATGTGGACAGGTTCCACGTC+GGG | 0.463532 | 7_3:-77036853 | None:intergenic |
| ACAGAGTCAACTCAGATGAT+AGG | 0.477854 | 7_3:+77037312 | Msa1125560:CDS |
| GATTTCACCACTTCATCAAA+CGG | 0.497093 | 7_3:-77036573 | None:intergenic |
| CAGCTTCAAGATGGAGGAAG+AGG | 0.497142 | 7_3:+77036454 | None:intergenic |
| GTAACATACAGTTGTTGTAA+TGG | 0.499420 | 7_3:+77039626 | Msa1125560:three_prime_UTR |
| TCCACCGGATGATGATTCAC+TGG | 0.509565 | 7_3:-77037222 | None:intergenic |
| AGATGTGGCATGGTGAAGAA+TGG | 0.513237 | 7_3:-77036818 | None:intergenic |
| ATCTGAGCCGTTTGATGAAG+TGG | 0.520388 | 7_3:+77036566 | Msa1125560:CDS |
| CTTCGTTTAAGCATAGAAAC+CGG | 0.525008 | 7_3:+77037251 | Msa1125560:CDS |
| TGTCGAGGAGCTAATCCGTT+CGG | 0.527854 | 7_3:+77037518 | Msa1125560:CDS |
| AATAAACATTTGAGCGGTGG+AGG | 0.528089 | 7_3:-77039500 | None:intergenic |
| GGTTCCACGTCGGGAGAAGA+AGG | 0.530859 | 7_3:-77036844 | None:intergenic |
| TCGAAGACTCGCTCCATCGT+TGG | 0.532351 | 7_3:+77036735 | Msa1125560:CDS |
| ATTTCATACGACTTTGTGAA+AGG | 0.535942 | 7_3:+77037480 | Msa1125560:CDS |
| TTCACCTTCTTCTCCCGACG+TGG | 0.537237 | 7_3:+77036840 | Msa1125560:CDS |
| ACGTACTTGCAGCTTCAAGA+TGG | 0.543743 | 7_3:+77036445 | None:intergenic |
| AGCGGTGGAGGAAAGTGAGG+AGG | 0.553032 | 7_3:-77039488 | None:intergenic |
| GATGCCAGTGAATCATCATC+CGG | 0.561795 | 7_3:+77037218 | Msa1125560:CDS |
| TGAAATCGTGCTGCCAACGA+TGG | 0.563513 | 7_3:-77036748 | None:intergenic |
| TAACTACTGTTTCACCATGA+AGG | 0.567622 | 7_3:-77039449 | None:intergenic |
| CGTTGGCAGCACGATTTCAA+CGG | 0.568585 | 7_3:+77036752 | Msa1125560:CDS |
| GAATGTGGAACAGAAAATGA+AGG | 0.569964 | 7_3:+77037190 | Msa1125560:intron |
| CATAGTATAATCTAGTTCGA+CGG | 0.575888 | 7_3:-77039523 | None:intergenic |
| TGCAACCACCAACTGCACTT+GGG | 0.581343 | 7_3:-77039414 | None:intergenic |
| CGGAATAAACATTTGAGCGG+TGG | 0.596422 | 7_3:-77039503 | None:intergenic |
| CTGAAATCCTGAACATCCAC+CGG | 0.596753 | 7_3:-77037270 | None:intergenic |
| CGGTGGAGGAAAGTGAGGAG+GGG | 0.602223 | 7_3:-77039486 | None:intergenic |
| ACGGAGAACCCAAGTGCAGT+TGG | 0.605079 | 7_3:+77039406 | Msa1125560:CDS |
| GAGAACCCAAGTGCAGTTGG+TGG | 0.609330 | 7_3:+77039409 | Msa1125560:CDS |
| CGCAACTGTTGATTATGTCG+AGG | 0.618120 | 7_3:+77037503 | Msa1125560:CDS |
| TTGAGCGGTGGAGGAAAGTG+AGG | 0.625815 | 7_3:-77039491 | None:intergenic |
| TACTTGCAGCTTCAAGATGG+AGG | 0.626519 | 7_3:+77036448 | None:intergenic |
| CGTTTAAGCATAGAAACCGG+TGG | 0.638957 | 7_3:+77037254 | Msa1125560:CDS |
| GACTTACTATGAAAGCCGAA+CGG | 0.642245 | 7_3:-77037533 | None:intergenic |
| GGGAGAAGAAGGTGAAGATG+TGG | 0.644162 | 7_3:-77036833 | None:intergenic |
| AAGAAGGTGAAGATGTGGCA+TGG | 0.649445 | 7_3:-77036828 | None:intergenic |
| GCCAGTGAATCATCATCCGG+TGG | 0.654118 | 7_3:+77037221 | Msa1125560:CDS |
| CGACGGAATAAACATTTGAG+CGG | 0.683940 | 7_3:-77039506 | None:intergenic |
| TATGTGGACAGGTTCCACGT+CGG | 0.705696 | 7_3:-77036854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTACAG+AGG | - | chr7_3:77036641-77036660 | None:intergenic | 10.0% |
| !! | AGTAAATACATTTCAAAATT+TGG | + | chr7_3:77036956-77036975 | Msa1125560:intron | 15.0% |
| !! | ATCAATTACATTACATATAA+TGG | - | chr7_3:77037146-77037165 | None:intergenic | 15.0% |
| !! | TTATAATTTATAAAAGACAC+TGG | - | chr7_3:77037395-77037414 | None:intergenic | 15.0% |
| !!! | ACCTTTTTATAATTTTAGTA+TGG | + | chr7_3:77037660-77037679 | Msa1125560:intron | 15.0% |
| !! | ACCATACTAAAATTATAAAA+AGG | - | chr7_3:77037664-77037683 | None:intergenic | 15.0% |
| !!! | TTTCAATACCTTTTAATTTT+GGG | - | chr7_3:77038945-77038964 | None:intergenic | 15.0% |
| !!! | TTTTCAATACCTTTTAATTT+TGG | - | chr7_3:77038946-77038965 | None:intergenic | 15.0% |
| !!! | CACAATTTTTCTGAATAAAA+GGG | - | chr7_3:77036533-77036552 | None:intergenic | 20.0% |
| !!! | ACACAATTTTTCTGAATAAA+AGG | - | chr7_3:77036534-77036553 | None:intergenic | 20.0% |
| !! | TTTATTCAGAAAAATTGTGT+TGG | + | chr7_3:77036534-77036553 | Msa1125560:CDS | 20.0% |
| !! | TACATTTCAAAATTTGGATT+AGG | + | chr7_3:77036962-77036981 | Msa1125560:intron | 20.0% |
| !!! | ATTTCAGTATGCTTTTAATT+TGG | + | chr7_3:77037286-77037305 | Msa1125560:CDS | 20.0% |
| !! | TGAAAAAAAATTCTTGAACA+GGG | - | chr7_3:77038140-77038159 | None:intergenic | 20.0% |
| !! | TTGAAAAAAAATTCTTGAAC+AGG | - | chr7_3:77038141-77038160 | None:intergenic | 20.0% |
| !! | TTTCAAAAAAAAAAACAGAG+TGG | + | chr7_3:77038155-77038174 | Msa1125560:intron | 20.0% |
| !! | TTCAAAAAAAAAAACAGAGT+GGG | + | chr7_3:77038156-77038175 | Msa1125560:intron | 20.0% |
| !! | TTGTAAAATGTATATACTCA+TGG | - | chr7_3:77038208-77038227 | None:intergenic | 20.0% |
| !! | TAAAACTTAACAACATATTC+AGG | + | chr7_3:77038256-77038275 | Msa1125560:intron | 20.0% |
| !! | TTCATCCTGAAAAATTTATA+CGG | - | chr7_3:77038325-77038344 | None:intergenic | 20.0% |
| !! | ATATGAAACCAAAATGTATA+AGG | - | chr7_3:77038424-77038443 | None:intergenic | 20.0% |
| !!! | TTATTTTGGTTTGAACTTAA+TGG | - | chr7_3:77038583-77038602 | None:intergenic | 20.0% |
| !! | TACTTAATAACAAAAGCAAA+GGG | - | chr7_3:77039000-77039019 | None:intergenic | 20.0% |
| !! | ATACTTAATAACAAAAGCAA+AGG | - | chr7_3:77039001-77039020 | None:intergenic | 20.0% |
| !!! | ATCATTTTCGTAATATAAGA+AGG | + | chr7_3:77039136-77039155 | Msa1125560:intron | 20.0% |
| !! | TTTATAAGTTATGACATTGA+AGG | + | chr7_3:77039329-77039348 | Msa1125560:intron | 20.0% |
| !! | AAAATAAATGTAAGTTTGTC+TGG | - | chr7_3:77039367-77039386 | None:intergenic | 20.0% |
| !!! | ACAAACTTACATTTATTTTC+TGG | + | chr7_3:77039368-77039387 | Msa1125560:intron | 20.0% |
| !!! | AATCAATCAATTGTTTTTTG+AGG | - | chr7_3:77039565-77039584 | None:intergenic | 20.0% |
| !! | TGTAATGGTAATAAATTATC+AGG | + | chr7_3:77039641-77039660 | Msa1125560:three_prime_UTR | 20.0% |
| ! | AAAAAGAGCTTATAAGATTC+TGG | - | chr7_3:77036780-77036799 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTACAAACAAGT+TGG | - | chr7_3:77037170-77037189 | None:intergenic | 25.0% |
| ! | TTTGTACAACTTAATGAATG+TGG | + | chr7_3:77037175-77037194 | Msa1125560:intron | 25.0% |
| !!! | ATTTTAGTATGGTACTAATC+AGG | + | chr7_3:77037671-77037690 | Msa1125560:intron | 25.0% |
| ! | AAATTGTTAATGTACACTCA+TGG | - | chr7_3:77038040-77038059 | None:intergenic | 25.0% |
| ! | AGGTTCAGATTCAAAATATA+AGG | + | chr7_3:77038276-77038295 | Msa1125560:intron | 25.0% |
| ! | AAAACTTCAAACATTGAACA+GGG | - | chr7_3:77038302-77038321 | None:intergenic | 25.0% |
| !! | GTTTTCCGTATAAATTTTTC+AGG | + | chr7_3:77038317-77038336 | Msa1125560:intron | 25.0% |
| !!! | AAAAACCTAAAAGCATCTAA+AGG | - | chr7_3:77038394-77038413 | None:intergenic | 25.0% |
| ! | ATGTATCATTTCTTGTTAAG+TGG | + | chr7_3:77038479-77038498 | Msa1125560:intron | 25.0% |
| ! | AAATTACAAAACTGACATGT+GGG | - | chr7_3:77038715-77038734 | None:intergenic | 25.0% |
| ! | TATGTTGCTCTACATAATTT+AGG | - | chr7_3:77038766-77038785 | None:intergenic | 25.0% |
| ! | TAAATTATGTAGAGCAACAT+AGG | + | chr7_3:77038765-77038784 | Msa1125560:intron | 25.0% |
| ! | CATTCTTTAATCAAAGTTCA+TGG | - | chr7_3:77038817-77038836 | None:intergenic | 25.0% |
| ! | CTATTTAGTTAGAGTAACAT+GGG | - | chr7_3:77038880-77038899 | None:intergenic | 25.0% |
| ! | TTAATCTCACATAAATAGAG+CGG | - | chr7_3:77038910-77038929 | None:intergenic | 25.0% |
| !! | AGTTTTCACCCAAAATTAAA+AGG | + | chr7_3:77038934-77038953 | Msa1125560:intron | 25.0% |
| !!! | TATTTTCTGGTTTCATTTTC+AGG | + | chr7_3:77039381-77039400 | Msa1125560:intron | 25.0% |
| ! | TCTCTCAATTGCTTGTTAAT+TGG | + | chr7_3:77036908-77036927 | Msa1125560:intron | 30.0% |
| TTATGACAGTTATGCAGATA+GGG | + | chr7_3:77037049-77037068 | Msa1125560:intron | 30.0% | |
| AGTCAGATTTCAATGTTGAT+AGG | + | chr7_3:77037350-77037369 | Msa1125560:intron | 30.0% | |
| ATTTCATACGACTTTGTGAA+AGG | + | chr7_3:77037480-77037499 | Msa1125560:CDS | 30.0% | |
| AAGAATGGGTATGTTATGTT+AGG | + | chr7_3:77038002-77038021 | Msa1125560:intron | 30.0% | |
| ! | AACCATATTCAAGTTCAGAT+TGG | + | chr7_3:77038096-77038115 | Msa1125560:intron | 30.0% |
| TTCCAATCTGAACTTGAATA+TGG | - | chr7_3:77038101-77038120 | None:intergenic | 30.0% | |
| ATTGGAATCCAAAATCAACA+AGG | + | chr7_3:77038114-77038133 | Msa1125560:intron | 30.0% | |
| GAAAACTTCAAACATTGAAC+AGG | - | chr7_3:77038303-77038322 | None:intergenic | 30.0% | |
| ! | TTACCATGCCTTATACATTT+TGG | + | chr7_3:77038413-77038432 | Msa1125560:intron | 30.0% |
| AAACCAAAATGTATAAGGCA+TGG | - | chr7_3:77038419-77038438 | None:intergenic | 30.0% | |
| TAACAAGAAATGATACATGC+TGG | - | chr7_3:77038477-77038496 | None:intergenic | 30.0% | |
| !! | TAATGTTGGTTACATTTTCC+AGG | - | chr7_3:77038625-77038644 | None:intergenic | 30.0% |
| ! | GAAGCACTTTATTCTAATGT+TGG | - | chr7_3:77038639-77038658 | None:intergenic | 30.0% |
| CAAATTACAAAACTGACATG+TGG | - | chr7_3:77038716-77038735 | None:intergenic | 30.0% | |
| GCTATTTAGTTAGAGTAACA+TGG | - | chr7_3:77038881-77038900 | None:intergenic | 30.0% | |
| TACTCTAACTAAATAGCCTA+AGG | + | chr7_3:77038884-77038903 | Msa1125560:intron | 30.0% | |
| ! | CAATGATGTTTTGTGTTTGA+TGG | + | chr7_3:77039112-77039131 | Msa1125560:intron | 30.0% |
| ! | CATAGTATAATCTAGTTCGA+CGG | - | chr7_3:77039526-77039545 | None:intergenic | 30.0% |
| GTAACATACAGTTGTTGTAA+TGG | + | chr7_3:77039626-77039645 | Msa1125560:three_prime_UTR | 30.0% | |
| ! | TAGCCTGTTCTATTATCTTT+TGG | + | chr7_3:77039674-77039693 | Msa1125560:three_prime_UTR | 30.0% |
| !! | TCAGAAAAATTGTGTTGGCT+TGG | + | chr7_3:77036539-77036558 | Msa1125560:CDS | 35.0% |
| GATTTCACCACTTCATCAAA+CGG | - | chr7_3:77036576-77036595 | None:intergenic | 35.0% | |
| CTTCAAACTAACCTAACTCA+CGG | - | chr7_3:77036603-77036622 | None:intergenic | 35.0% | |
| !! | TTGGATTAGGTTTTCGTTGA+TGG | + | chr7_3:77036975-77036994 | Msa1125560:intron | 35.0% |
| ! | TATGAGAAGCATATGCGATA+AGG | - | chr7_3:77037002-77037021 | None:intergenic | 35.0% |
| GTTATGACAGTTATGCAGAT+AGG | + | chr7_3:77037048-77037067 | Msa1125560:intron | 35.0% | |
| GAATGTGGAACAGAAAATGA+AGG | + | chr7_3:77037190-77037209 | Msa1125560:intron | 35.0% | |
| GGAACAGAAAATGAAGGAAT+TGG | + | chr7_3:77037196-77037215 | Msa1125560:intron | 35.0% | |
| !! | TAAACGAAGCATTTTTCCAC+CGG | - | chr7_3:77037240-77037259 | None:intergenic | 35.0% |
| CTTCGTTTAAGCATAGAAAC+CGG | + | chr7_3:77037251-77037270 | Msa1125560:CDS | 35.0% | |
| TTGAAATCTGACTATCCAAG+TGG | - | chr7_3:77037343-77037362 | None:intergenic | 35.0% | |
| !! | TATTGCCAGAGTTTTTGAGA+AGG | + | chr7_3:77037431-77037450 | Msa1125560:intron | 35.0% |
| TGAGAAGGAAGGAATTAAAC+TGG | + | chr7_3:77037446-77037465 | Msa1125560:CDS | 35.0% | |
| ATCAGGTAACGAAGTTTCTT+AGG | + | chr7_3:77037688-77037707 | Msa1125560:intron | 35.0% | |
| TCCTAAAATCTCAAGCTGAT+AGG | - | chr7_3:77037842-77037861 | None:intergenic | 35.0% | |
| !! | CTTGAGATTTTAGGAGAGTT+GGG | + | chr7_3:77037847-77037866 | Msa1125560:intron | 35.0% |
| TACCCATTCTTGTAAAGAGT+GGG | - | chr7_3:77037993-77038012 | None:intergenic | 35.0% | |
| ATACCCATTCTTGTAAAGAG+TGG | - | chr7_3:77037994-77038013 | None:intergenic | 35.0% | |
| ! | TGGACGATTTTATATCCCAA+CGG | - | chr7_3:77038188-77038207 | None:intergenic | 35.0% |
| GATGAACCTGTTGTATATAG+AGG | + | chr7_3:77038339-77038358 | Msa1125560:intron | 35.0% | |
| AAGTCACCTCTATATACAAC+AGG | - | chr7_3:77038348-77038367 | None:intergenic | 35.0% | |
| !! | ATCTAAAGGCATTGTTTGGA+TGG | - | chr7_3:77038380-77038399 | None:intergenic | 35.0% |
| !! | AAGCATCTAAAGGCATTGTT+TGG | - | chr7_3:77038384-77038403 | None:intergenic | 35.0% |
| ! | CAATGCCTTTAGATGCTTTT+AGG | + | chr7_3:77038386-77038405 | Msa1125560:intron | 35.0% |
| AAGTGTGCCAAAAACCTAAA+CGG | - | chr7_3:77038560-77038579 | None:intergenic | 35.0% | |
| !!! | CTCTAGTGGTAGCTTTATTT+TGG | - | chr7_3:77038597-77038616 | None:intergenic | 35.0% |
| AAGTGCTTCTTGCAAAATTG+TGG | + | chr7_3:77038650-77038669 | Msa1125560:intron | 35.0% | |
| CATAGGTACTTCTGATCTTA+AGG | + | chr7_3:77038782-77038801 | Msa1125560:intron | 35.0% | |
| TCACATCGACATACAATCTA+AGG | - | chr7_3:77039215-77039234 | None:intergenic | 35.0% | |
| ACTGTGATATCCAATGGTAT+TGG | + | chr7_3:77039254-77039273 | Msa1125560:intron | 35.0% | |
| ! | GATATCCAATGGTATTGGAA+TGG | + | chr7_3:77039259-77039278 | Msa1125560:intron | 35.0% |
| ACATTCCATTCCAATACCAT+TGG | - | chr7_3:77039267-77039286 | None:intergenic | 35.0% | |
| CAGTTGTAAAAGTTCCTTCA+TGG | + | chr7_3:77039435-77039454 | Msa1125560:CDS | 35.0% | |
| TAACTACTGTTTCACCATGA+AGG | - | chr7_3:77039452-77039471 | None:intergenic | 35.0% | |
| GAAACAGTAGTTAGCTATCT+TGG | + | chr7_3:77039459-77039478 | Msa1125560:exon | 35.0% | |
| GCACCAAAAGATAATAGAAC+AGG | - | chr7_3:77039680-77039699 | None:intergenic | 35.0% | |
| TGAAATCTGAACCGTGAGTT+AGG | + | chr7_3:77036589-77036608 | Msa1125560:intron | 40.0% | |
| AGAAGATCCTGAGACATCAA+TGG | + | chr7_3:77036677-77036696 | Msa1125560:intron | 40.0% | |
| AATCACACCATTGATGTCTC+AGG | - | chr7_3:77036687-77036706 | None:intergenic | 40.0% | |
| AGTTCATGTTGTACTGTACC+CGG | + | chr7_3:77037103-77037122 | Msa1125560:intron | 40.0% | |
| ACAGAGTCAACTCAGATGAT+AGG | + | chr7_3:77037312-77037331 | Msa1125560:CDS | 40.0% | |
| AGATGATAGGTACTACCACT+TGG | + | chr7_3:77037325-77037344 | Msa1125560:intron | 40.0% | |
| GACACTGGTGTATCAACATA+TGG | - | chr7_3:77037380-77037399 | None:intergenic | 40.0% | |
| TCCTTCCTTCTCAAAAACTC+TGG | - | chr7_3:77037439-77037458 | None:intergenic | 40.0% | |
| GACTTACTATGAAAGCCGAA+CGG | - | chr7_3:77037536-77037555 | None:intergenic | 40.0% | |
| ACTTGTAACCATGTGTATGC+TGG | + | chr7_3:77037562-77037581 | Msa1125560:intron | 40.0% | |
| AATCTCAAGCTGATAGGCAA+AGG | - | chr7_3:77037836-77037855 | None:intergenic | 40.0% | |
| ! | GCCTATCAGCTTGAGATTTT+AGG | + | chr7_3:77037838-77037857 | Msa1125560:intron | 40.0% |
| !! | GCTTGAGATTTTAGGAGAGT+TGG | + | chr7_3:77037846-77037865 | Msa1125560:intron | 40.0% |
| AAGCCCACTCTTTACAAGAA+TGG | + | chr7_3:77037987-77038006 | Msa1125560:intron | 40.0% | |
| AGCCCACTCTTTACAAGAAT+GGG | + | chr7_3:77037988-77038007 | Msa1125560:intron | 40.0% | |
| TTCAAAGCAAAAGTTCCGTC+AGG | - | chr7_3:77038521-77038540 | None:intergenic | 40.0% | |
| CCAAAAACCTAAACGGTGTT+GGG | - | chr7_3:77038553-77038572 | None:intergenic | 40.0% | |
| ! | TTTTCCAGGCATATCTCTAG+TGG | - | chr7_3:77038611-77038630 | None:intergenic | 40.0% |
| CTTGCAAAATTGTGGTCAAG+AGG | + | chr7_3:77038658-77038677 | Msa1125560:intron | 40.0% | |
| ATATCACCAAACAGTGGAGA+AGG | - | chr7_3:77038857-77038876 | None:intergenic | 40.0% | |
| CCAAATAAGTGAATCACAGC+AGG | - | chr7_3:77039049-77039068 | None:intergenic | 40.0% | |
| CCTGCTGTGATTCACTTATT+TGG | + | chr7_3:77039046-77039065 | Msa1125560:intron | 40.0% | |
| GATGCAACTGTGATATCCAA+TGG | + | chr7_3:77039248-77039267 | Msa1125560:intron | 40.0% | |
| !!! | CTGGTTTCATTTTCAGGTGA+CGG | + | chr7_3:77039387-77039406 | Msa1125560:intron | 40.0% |
| AATAAACATTTGAGCGGTGG+AGG | - | chr7_3:77039503-77039522 | None:intergenic | 40.0% | |
| CGACGGAATAAACATTTGAG+CGG | - | chr7_3:77039509-77039528 | None:intergenic | 40.0% | |
| ATCTGAGCCGTTTGATGAAG+TGG | + | chr7_3:77036566-77036585 | Msa1125560:CDS | 45.0% | |
| AGATGTGGCATGGTGAAGAA+TGG | - | chr7_3:77036821-77036840 | None:intergenic | 45.0% | |
| AAGAAGGTGAAGATGTGGCA+TGG | - | chr7_3:77036831-77036850 | None:intergenic | 45.0% | |
| ! | CAGTTTTCGGTTATGTGGAC+AGG | - | chr7_3:77036868-77036887 | None:intergenic | 45.0% |
| ! | GAACGCAGTTTTCGGTTATG+TGG | - | chr7_3:77036873-77036892 | None:intergenic | 45.0% |
| ! | GCATACACGAACGCAGTTTT+CGG | - | chr7_3:77036881-77036900 | None:intergenic | 45.0% |
| GTTCATGTTGTACTGTACCC+GGG | + | chr7_3:77037104-77037123 | Msa1125560:intron | 45.0% | |
| GATGCCAGTGAATCATCATC+CGG | + | chr7_3:77037218-77037237 | Msa1125560:CDS | 45.0% | |
| CGTTTAAGCATAGAAACCGG+TGG | + | chr7_3:77037254-77037273 | Msa1125560:CDS | 45.0% | |
| ATAGAAACCGGTGGATGTTC+AGG | + | chr7_3:77037263-77037282 | Msa1125560:CDS | 45.0% | |
| CTGAAATCCTGAACATCCAC+CGG | - | chr7_3:77037273-77037292 | None:intergenic | 45.0% | |
| !! | GCCAGAGTTTTTGAGAAGGA+AGG | + | chr7_3:77037435-77037454 | Msa1125560:intron | 45.0% |
| ! | CGCAACTGTTGATTATGTCG+AGG | + | chr7_3:77037503-77037522 | Msa1125560:CDS | 45.0% |
| CACAAACACCAGCATACACA+TGG | - | chr7_3:77037573-77037592 | None:intergenic | 45.0% | |
| CATGTGTATGCTGGTGTTTG+TGG | + | chr7_3:77037571-77037590 | Msa1125560:intron | 45.0% | |
| TGCACAGGAATCACAGAGAA+AGG | - | chr7_3:77037628-77037647 | None:intergenic | 45.0% | |
| GATTCCTGTGCACTACAACA+TGG | + | chr7_3:77037636-77037655 | Msa1125560:intron | 45.0% | |
| !! | ATTTTAGGAGAGTTGGGCCT+TGG | + | chr7_3:77037853-77037872 | Msa1125560:intron | 45.0% |
| AATCCACTCTCCAGTTACCA+AGG | - | chr7_3:77037873-77037892 | None:intergenic | 45.0% | |
| !!! | GAACAGGGCCTTGTTGATTT+TGG | - | chr7_3:77038125-77038144 | None:intergenic | 45.0% |
| TGATGCAATTGCTCTCCTGA+CGG | + | chr7_3:77038503-77038522 | Msa1125560:intron | 45.0% | |
| !! | CCCAACACCGTTTAGGTTTT+TGG | + | chr7_3:77038550-77038569 | Msa1125560:intron | 45.0% |
| GCCAAAAACCTAAACGGTGT+TGG | - | chr7_3:77038554-77038573 | None:intergenic | 45.0% | |
| TTGACACCTTCTCCACTGTT+TGG | + | chr7_3:77038848-77038867 | Msa1125560:intron | 45.0% | |
| CATGGGATATCACCAAACAG+TGG | - | chr7_3:77038863-77038882 | None:intergenic | 45.0% | |
| CACATAAATAGAGCGGCCTT+AGG | - | chr7_3:77038903-77038922 | None:intergenic | 45.0% | |
| AAGTGAATCACAGCAGGCTA+TGG | - | chr7_3:77039043-77039062 | None:intergenic | 45.0% | |
| CATTAACACGCCCTTCAAAG+CGG | + | chr7_3:77039161-77039180 | Msa1125560:intron | 45.0% | |
| !! | TGCGTTTTGAACCAAGTTCG+AGG | + | chr7_3:77039188-77039207 | Msa1125560:intron | 45.0% |
| CAATCTAAGGACCTCGAACT+TGG | - | chr7_3:77039202-77039221 | None:intergenic | 45.0% | |
| TGTCATGAGTGTGCGAGAAA+AGG | + | chr7_3:77039284-77039303 | Msa1125560:intron | 45.0% | |
| GTCATGAGTGTGCGAGAAAA+GGG | + | chr7_3:77039285-77039304 | Msa1125560:intron | 45.0% | |
| CGGAATAAACATTTGAGCGG+TGG | - | chr7_3:77039506-77039525 | None:intergenic | 45.0% | |
| TGAAATCGTGCTGCCAACGA+TGG | - | chr7_3:77036751-77036770 | None:intergenic | 50.0% | |
| CGTTGGCAGCACGATTTCAA+CGG | + | chr7_3:77036752-77036771 | Msa1125560:CDS | 50.0% | |
| GGGAGAAGAAGGTGAAGATG+TGG | - | chr7_3:77036836-77036855 | None:intergenic | 50.0% | |
| TATGTGGACAGGTTCCACGT+CGG | - | chr7_3:77036857-77036876 | None:intergenic | 50.0% | |
| TGTTGTACTGTACCCGGGTT+AGG | + | chr7_3:77037109-77037128 | Msa1125560:intron | 50.0% | |
| GTACGCATAGTTCCTAACCC+GGG | - | chr7_3:77037124-77037143 | None:intergenic | 50.0% | |
| GGTACGCATAGTTCCTAACC+CGG | - | chr7_3:77037125-77037144 | None:intergenic | 50.0% | |
| TCCACCGGATGATGATTCAC+TGG | - | chr7_3:77037225-77037244 | None:intergenic | 50.0% | |
| TGTCGAGGAGCTAATCCGTT+CGG | + | chr7_3:77037518-77037537 | Msa1125560:CDS | 50.0% | |
| GGTTCCATGTTGTAGTGCAC+AGG | - | chr7_3:77037643-77037662 | None:intergenic | 50.0% | |
| ACAGAGTGGGTATGTTCCGT+TGG | + | chr7_3:77038169-77038188 | Msa1125560:intron | 50.0% | |
| CAGAGTGGGTATGTTCCGTT+GGG | + | chr7_3:77038170-77038189 | Msa1125560:intron | 50.0% | |
| ACTCTCTCCCAACACCGTTT+AGG | + | chr7_3:77038543-77038562 | Msa1125560:intron | 50.0% | |
| GCTACCACTAGAGATATGCC+TGG | + | chr7_3:77038604-77038623 | Msa1125560:intron | 50.0% | |
| ACAAAACTGACATGTGGGCC+TGG | - | chr7_3:77038710-77038729 | None:intergenic | 50.0% | |
| !! | AACGCACATGCCGCTTTGAA+GGG | - | chr7_3:77039174-77039193 | None:intergenic | 50.0% |
| !! | AAACGCACATGCCGCTTTGA+AGG | - | chr7_3:77039175-77039194 | None:intergenic | 50.0% |
| TGCAACCACCAACTGCACTT+GGG | - | chr7_3:77039417-77039436 | None:intergenic | 50.0% | |
| TCGAAGACTCGCTCCATCGT+TGG | + | chr7_3:77036735-77036754 | Msa1125560:CDS | 55.0% | |
| TTCACCTTCTTCTCCCGACG+TGG | + | chr7_3:77036840-77036859 | Msa1125560:CDS | 55.0% | |
| ATGTGGACAGGTTCCACGTC+GGG | - | chr7_3:77036856-77036875 | None:intergenic | 55.0% | |
| GCCAGTGAATCATCATCCGG+TGG | + | chr7_3:77037221-77037240 | Msa1125560:CDS | 55.0% | |
| ! | GAGAGTTGGGCCTTGGTAAC+TGG | + | chr7_3:77037860-77037879 | Msa1125560:intron | 55.0% |
| GGTTTACGTTGCAGGGCTAC+AGG | - | chr7_3:77038689-77038708 | None:intergenic | 55.0% | |
| GTAGCCCTGCAACGTAAACC+AGG | + | chr7_3:77038689-77038708 | Msa1125560:intron | 55.0% | |
| TGGGCCTGGTTTACGTTGCA+GGG | - | chr7_3:77038696-77038715 | None:intergenic | 55.0% | |
| TGTGCGAGAAAAGGGTCGTG+TGG | + | chr7_3:77039293-77039312 | Msa1125560:intron | 55.0% | |
| ACGGAGAACCCAAGTGCAGT+TGG | + | chr7_3:77039406-77039425 | Msa1125560:CDS | 55.0% | |
| GAGAACCCAAGTGCAGTTGG+TGG | + | chr7_3:77039409-77039428 | Msa1125560:CDS | 55.0% | |
| CTGCAACCACCAACTGCACT+TGG | - | chr7_3:77039418-77039437 | None:intergenic | 55.0% | |
| TTGAGCGGTGGAGGAAAGTG+AGG | - | chr7_3:77039494-77039513 | None:intergenic | 55.0% | |
| GGTTCCACGTCGGGAGAAGA+AGG | - | chr7_3:77036847-77036866 | None:intergenic | 60.0% | |
| ! | GGGCCTTGGTAACTGGAGAG+TGG | + | chr7_3:77037867-77037886 | Msa1125560:intron | 60.0% |
| GTGGGCCTGGTTTACGTTGC+AGG | - | chr7_3:77038697-77038716 | None:intergenic | 60.0% | |
| CGGTGGAGGAAAGTGAGGAG+GGG | - | chr7_3:77039489-77039508 | None:intergenic | 60.0% | |
| GCGGTGGAGGAAAGTGAGGA+GGG | - | chr7_3:77039490-77039509 | None:intergenic | 60.0% | |
| AGCGGTGGAGGAAAGTGAGG+AGG | - | chr7_3:77039491-77039510 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 77036456 | 77039715 | 77036456 | ID=Msa1125560;Name=Msa1125560 |
| chr7_3 | mRNA | 77036456 | 77039715 | 77036456 | ID=Msa1125560-mRNA-1;Parent=Msa1125560;Name=Msa1125560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.75|0.6|0.8|0.5|0.6|5|247|210 |
| chr7_3 | exon | 77036456 | 77036601 | 77036456 | ID=Msa1125560-mRNA-1:exon:21118;Parent=Msa1125560-mRNA-1 |
| chr7_3 | exon | 77036714 | 77036894 | 77036714 | ID=Msa1125560-mRNA-1:exon:21119;Parent=Msa1125560-mRNA-1 |
| chr7_3 | exon | 77037203 | 77037333 | 77037203 | ID=Msa1125560-mRNA-1:exon:21120;Parent=Msa1125560-mRNA-1 |
| chr7_3 | exon | 77037440 | 77037548 | 77037440 | ID=Msa1125560-mRNA-1:exon:21121;Parent=Msa1125560-mRNA-1 |
| chr7_3 | exon | 77039403 | 77039715 | 77039403 | ID=Msa1125560-mRNA-1:exon:21122;Parent=Msa1125560-mRNA-1 |
| chr7_3 | CDS | 77036456 | 77036601 | 77036456 | ID=Msa1125560-mRNA-1:cds;Parent=Msa1125560-mRNA-1 |
| chr7_3 | CDS | 77036714 | 77036894 | 77036714 | ID=Msa1125560-mRNA-1:cds;Parent=Msa1125560-mRNA-1 |
| chr7_3 | CDS | 77037203 | 77037333 | 77037203 | ID=Msa1125560-mRNA-1:cds;Parent=Msa1125560-mRNA-1 |
| chr7_3 | CDS | 77037440 | 77037548 | 77037440 | ID=Msa1125560-mRNA-1:cds;Parent=Msa1125560-mRNA-1 |
| chr7_3 | CDS | 77039403 | 77039468 | 77039403 | ID=Msa1125560-mRNA-1:cds;Parent=Msa1125560-mRNA-1 |
| chr7_3 | three_prime_UTR | 77039469 | 77039715 | 77039469 | ID=Msa1125560-mRNA-1:three_prime_utr;Parent=Msa1125560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
