AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132920 MtrunA17_Chr1g0202411 89.796 98 10 0 5 102 206 303 3.31e-59 183
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132920 AT1G28140.1 73.684 95 25 0 5 99 184 278 5.58e-46 149

Find 36 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTACTTTGCTTGCTTTA+TGG 0.047856 1_3:+64185449 Msa0132920:CDS
AACCTGTACTACATTGTTAT+TGG 0.198954 1_3:-64185892 None:intergenic
ACAATCTTTACAGGTATAAA+AGG 0.268933 1_3:-64185857 None:intergenic
GAAAGCCTTGATTGAGAAAC+TGG 0.308650 1_3:+64185669 Msa0132920:CDS
ACCTGTACTACATTGTTATT+GGG 0.329643 1_3:-64185891 None:intergenic
TCATAAGTAATTTACCTTGA+TGG 0.335092 1_3:-64185515 None:intergenic
ATTATTCCTATTCTTCTTCT+CGG 0.344771 1_3:+64184828 Msa0132920:CDS
AAATTTGCAGTCCGGTTTGA+TGG 0.360898 1_3:+64185414 Msa0132920:intron
TCATCTTGTATTCTTGAAAC+AGG 0.374031 1_3:+64184765 Msa0132920:CDS
TACTTTGCTTGCTTTATGGA+TGG 0.378911 1_3:+64185453 Msa0132920:CDS
ACATAGCATACAATCTTTAC+AGG 0.389012 1_3:-64185866 None:intergenic
TATTCTTCTTCTCGGACATC+TGG 0.389731 1_3:+64184836 Msa0132920:CDS
TTGTTCCAGTTTCTCAATCA+AGG 0.397711 1_3:-64185674 None:intergenic
CATAAGTAATTTACCTTGAT+GGG 0.407793 1_3:-64185514 None:intergenic
GGGCTGAGTGAATTTCCTTC+CGG 0.442279 1_3:-64185494 None:intergenic
GAGAGATTTGAACGTGAAAA+CGG 0.450871 1_3:-64185632 None:intergenic
AGTTCCGTCGTCCATCAAAC+CGG 0.455453 1_3:-64185425 None:intergenic
ACTTTGCTTGCTTTATGGAT+GGG 0.461719 1_3:+64185454 Msa0132920:CDS
ATTATAAAAGAAAAGTTGTC+AGG 0.464062 1_3:+64185954 Msa0132920:three_prime_UTR
AGATGTCCGAGAAGAAGAAT+AGG 0.484627 1_3:-64184834 None:intergenic
TGCTACGGCAAGCTAGAAGC+TGG 0.499071 1_3:+64184792 Msa0132920:CDS
CTCTCTTATATGAGAACTGC+AGG 0.503204 1_3:-64185811 None:intergenic
CATATATACTTACAGTGAGC+AGG 0.537449 1_3:-64186005 None:intergenic
TACCAGCTCCAATACACCCT+GGG 0.538427 1_3:+64185718 Msa0132920:three_prime_UTR
ACCCAATAACAATGTAGTAC+AGG 0.543867 1_3:+64185890 Msa0132920:three_prime_UTR
GAAATTCACTCAGCCCATCA+AGG 0.577695 1_3:+64185501 Msa0132920:CDS
CTTGAAACAGGACTCTGCTA+CGG 0.605674 1_3:+64184777 Msa0132920:CDS
AATAACAATGTAGTACAGGT+TGG 0.618070 1_3:+64185894 Msa0132920:three_prime_UTR
TTTAATATCAAGGATGACAT+CGG 0.623685 1_3:+64185601 Msa0132920:intron
CAGTCCGGTTTGATGGACGA+CGG 0.644994 1_3:+64185421 Msa0132920:intron
GGTGGACTCCTTGAACTCGT+AGG 0.652460 1_3:+64185741 Msa0132920:three_prime_UTR
GCAGTTCTCATATAAGAGAG+AGG 0.662102 1_3:+64185814 Msa0132920:three_prime_UTR
ATACCAGCTCCAATACACCC+TGG 0.669895 1_3:+64185717 Msa0132920:three_prime_UTR
ACCAGCTCCAATACACCCTG+GGG 0.683177 1_3:+64185719 Msa0132920:three_prime_UTR
TCTTATATGAGAACTGCAGG+CGG 0.723144 1_3:-64185808 None:intergenic
CCAGCTCCAATACACCCTGG+GGG 0.764571 1_3:+64185720 Msa0132920:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTTTTCAATTAGTTA+AGG + chr1_3:64184946-64184965 Msa0132920:intron 15.0%
!! AGAAAAAGATATTATACAAA+TGG - chr1_3:64185385-64185404 None:intergenic 15.0%
!!! ATTTTTTTCGAAAAAAATGA+TGG + chr1_3:64185765-64185784 Msa0132920:three_prime_UTR 15.0%
!!! TTTTTCTTTTCAATTAGTTA+AGG + chr1_3:64184946-64184965 Msa0132920:intron 15.0%
!! AGAAAAAGATATTATACAAA+TGG - chr1_3:64185385-64185404 None:intergenic 15.0%
!!! ATTTTTTTCGAAAAAAATGA+TGG + chr1_3:64185765-64185784 Msa0132920:three_prime_UTR 15.0%
!! AATTATCAAAATCATGAGAA+TGG + chr1_3:64185000-64185019 Msa0132920:intron 20.0%
!! CATCAAAAGAAATATGATAA+CGG - chr1_3:64185226-64185245 None:intergenic 20.0%
!! ATTATAAAAGAAAAGTTGTC+AGG + chr1_3:64185954-64185973 Msa0132920:three_prime_UTR 20.0%
!! AATTATCAAAATCATGAGAA+TGG + chr1_3:64185000-64185019 Msa0132920:intron 20.0%
!! CATCAAAAGAAATATGATAA+CGG - chr1_3:64185226-64185245 None:intergenic 20.0%
!! ATTATAAAAGAAAAGTTGTC+AGG + chr1_3:64185954-64185973 Msa0132920:three_prime_UTR 20.0%
! ATTATTCCTATTCTTCTTCT+CGG + chr1_3:64184828-64184847 Msa0132920:CDS 25.0%
!! CATGTTGCCTATTTAATTTA+AGG + chr1_3:64184895-64184914 Msa0132920:intron 25.0%
! ATGGCTACCTTAAATTAAAT+AGG - chr1_3:64184905-64184924 None:intergenic 25.0%
!! TTTTCAATTAGTTAAGGAGT+TGG + chr1_3:64184952-64184971 Msa0132920:intron 25.0%
!!! TTTTTTCGATGAAGATCTAA+TGG + chr1_3:64185026-64185045 Msa0132920:intron 25.0%
! CTATTATTTATTTGAGTCCA+TGG + chr1_3:64185246-64185265 Msa0132920:intron 25.0%
! ACAATAATTTAAGAGTCAAG+AGG - chr1_3:64185284-64185303 None:intergenic 25.0%
! TATTATACAAATGGACCAAT+CGG - chr1_3:64185376-64185395 None:intergenic 25.0%
! CATAAGTAATTTACCTTGAT+GGG - chr1_3:64185517-64185536 None:intergenic 25.0%
! TCATAAGTAATTTACCTTGA+TGG - chr1_3:64185518-64185537 None:intergenic 25.0%
! TAAACACAAATCCAATATCA+GGG - chr1_3:64185585-64185604 None:intergenic 25.0%
! TTAAACACAAATCCAATATC+AGG - chr1_3:64185586-64185605 None:intergenic 25.0%
! TGGATTTGTGTTTAATATCA+AGG + chr1_3:64185591-64185610 Msa0132920:intron 25.0%
! TTTAATATCAAGGATGACAT+CGG + chr1_3:64185601-64185620 Msa0132920:intron 25.0%
! ACAATCTTTACAGGTATAAA+AGG - chr1_3:64185860-64185879 None:intergenic 25.0%
! ATTATTCCTATTCTTCTTCT+CGG + chr1_3:64184828-64184847 Msa0132920:CDS 25.0%
!! CATGTTGCCTATTTAATTTA+AGG + chr1_3:64184895-64184914 Msa0132920:intron 25.0%
! ATGGCTACCTTAAATTAAAT+AGG - chr1_3:64184905-64184924 None:intergenic 25.0%
!! TTTTCAATTAGTTAAGGAGT+TGG + chr1_3:64184952-64184971 Msa0132920:intron 25.0%
!!! TTTTTTCGATGAAGATCTAA+TGG + chr1_3:64185026-64185045 Msa0132920:intron 25.0%
! CTATTATTTATTTGAGTCCA+TGG + chr1_3:64185246-64185265 Msa0132920:intron 25.0%
! ACAATAATTTAAGAGTCAAG+AGG - chr1_3:64185284-64185303 None:intergenic 25.0%
! TATTATACAAATGGACCAAT+CGG - chr1_3:64185376-64185395 None:intergenic 25.0%
! CATAAGTAATTTACCTTGAT+GGG - chr1_3:64185517-64185536 None:intergenic 25.0%
! TCATAAGTAATTTACCTTGA+TGG - chr1_3:64185518-64185537 None:intergenic 25.0%
! TAAACACAAATCCAATATCA+GGG - chr1_3:64185585-64185604 None:intergenic 25.0%
! TTAAACACAAATCCAATATC+AGG - chr1_3:64185586-64185605 None:intergenic 25.0%
! TGGATTTGTGTTTAATATCA+AGG + chr1_3:64185591-64185610 Msa0132920:intron 25.0%
! TTTAATATCAAGGATGACAT+CGG + chr1_3:64185601-64185620 Msa0132920:intron 25.0%
! ACAATCTTTACAGGTATAAA+AGG - chr1_3:64185860-64185879 None:intergenic 25.0%
TCATCTTGTATTCTTGAAAC+AGG + chr1_3:64184765-64184784 Msa0132920:CDS 30.0%
! TGTTTAATAGAGCACTTTAG+AGG - chr1_3:64184877-64184896 None:intergenic 30.0%
AACAAGAACCATATATGCTA+TGG - chr1_3:64184924-64184943 None:intergenic 30.0%
!! TGATAACGGTTATCAATTCA+GGG - chr1_3:64185212-64185231 None:intergenic 30.0%
!! ATGATAACGGTTATCAATTC+AGG - chr1_3:64185213-64185232 None:intergenic 30.0%
!! TTACTCTAAAATTTGCAGTC+CGG + chr1_3:64185406-64185425 Msa0132920:intron 30.0%
AACTTACTTTGCTTGCTTTA+TGG + chr1_3:64185449-64185468 Msa0132920:CDS 30.0%
AAAAAATTCCTACGAGTTCA+AGG - chr1_3:64185752-64185771 None:intergenic 30.0%
ACATAGCATACAATCTTTAC+AGG - chr1_3:64185869-64185888 None:intergenic 30.0%
! ACCTGTACTACATTGTTATT+GGG - chr1_3:64185894-64185913 None:intergenic 30.0%
AACCTGTACTACATTGTTAT+TGG - chr1_3:64185895-64185914 None:intergenic 30.0%
AATAACAATGTAGTACAGGT+TGG + chr1_3:64185894-64185913 Msa0132920:three_prime_UTR 30.0%
! TAAGTTCCATCCAGTTTTTA+TGG + chr1_3:64186040-64186059 Msa0132920:three_prime_UTR 30.0%
TCATCTTGTATTCTTGAAAC+AGG + chr1_3:64184765-64184784 Msa0132920:CDS 30.0%
! TGTTTAATAGAGCACTTTAG+AGG - chr1_3:64184877-64184896 None:intergenic 30.0%
AACAAGAACCATATATGCTA+TGG - chr1_3:64184924-64184943 None:intergenic 30.0%
!! TGATAACGGTTATCAATTCA+GGG - chr1_3:64185212-64185231 None:intergenic 30.0%
!! ATGATAACGGTTATCAATTC+AGG - chr1_3:64185213-64185232 None:intergenic 30.0%
!! TTACTCTAAAATTTGCAGTC+CGG + chr1_3:64185406-64185425 Msa0132920:intron 30.0%
AACTTACTTTGCTTGCTTTA+TGG + chr1_3:64185449-64185468 Msa0132920:CDS 30.0%
AAAAAATTCCTACGAGTTCA+AGG - chr1_3:64185752-64185771 None:intergenic 30.0%
ACATAGCATACAATCTTTAC+AGG - chr1_3:64185869-64185888 None:intergenic 30.0%
! ACCTGTACTACATTGTTATT+GGG - chr1_3:64185894-64185913 None:intergenic 30.0%
AACCTGTACTACATTGTTAT+TGG - chr1_3:64185895-64185914 None:intergenic 30.0%
AATAACAATGTAGTACAGGT+TGG + chr1_3:64185894-64185913 Msa0132920:three_prime_UTR 30.0%
! TAAGTTCCATCCAGTTTTTA+TGG + chr1_3:64186040-64186059 Msa0132920:three_prime_UTR 30.0%
TAAGGTAGCCATAGCATATA+TGG + chr1_3:64184913-64184932 Msa0132920:intron 35.0%
AACATATCCAACAACCTAGT+GGG + chr1_3:64185109-64185128 Msa0132920:intron 35.0%
ATAAGTGCAATCATGATAGG+AGG - chr1_3:64185182-64185201 None:intergenic 35.0%
GAGATAAGTGCAATCATGAT+AGG - chr1_3:64185185-64185204 None:intergenic 35.0%
TTATTGTCACCAATACCGAT+TGG + chr1_3:64185358-64185377 Msa0132920:intron 35.0%
TACTTTGCTTGCTTTATGGA+TGG + chr1_3:64185453-64185472 Msa0132920:CDS 35.0%
ACTTTGCTTGCTTTATGGAT+GGG + chr1_3:64185454-64185473 Msa0132920:CDS 35.0%
! GGTCTTTTTGTGATATTTGC+CGG + chr1_3:64185475-64185494 Msa0132920:CDS 35.0%
! TTTTTGTGATATTTGCCGGA+AGG + chr1_3:64185479-64185498 Msa0132920:CDS 35.0%
AATATCAGGGAATTTATGCG+GGG - chr1_3:64185572-64185591 None:intergenic 35.0%
CAATATCAGGGAATTTATGC+GGG - chr1_3:64185573-64185592 None:intergenic 35.0%
CCAATATCAGGGAATTTATG+CGG - chr1_3:64185574-64185593 None:intergenic 35.0%
GAGAGATTTGAACGTGAAAA+CGG - chr1_3:64185635-64185654 None:intergenic 35.0%
TTGTTCCAGTTTCTCAATCA+AGG - chr1_3:64185677-64185696 None:intergenic 35.0%
ACCCAATAACAATGTAGTAC+AGG + chr1_3:64185890-64185909 Msa0132920:three_prime_UTR 35.0%
CATATATACTTACAGTGAGC+AGG - chr1_3:64186008-64186027 None:intergenic 35.0%
TAAGGTAGCCATAGCATATA+TGG + chr1_3:64184913-64184932 Msa0132920:intron 35.0%
AACATATCCAACAACCTAGT+GGG + chr1_3:64185109-64185128 Msa0132920:intron 35.0%
ATAAGTGCAATCATGATAGG+AGG - chr1_3:64185182-64185201 None:intergenic 35.0%
GAGATAAGTGCAATCATGAT+AGG - chr1_3:64185185-64185204 None:intergenic 35.0%
TTATTGTCACCAATACCGAT+TGG + chr1_3:64185358-64185377 Msa0132920:intron 35.0%
TACTTTGCTTGCTTTATGGA+TGG + chr1_3:64185453-64185472 Msa0132920:CDS 35.0%
ACTTTGCTTGCTTTATGGAT+GGG + chr1_3:64185454-64185473 Msa0132920:CDS 35.0%
! GGTCTTTTTGTGATATTTGC+CGG + chr1_3:64185475-64185494 Msa0132920:CDS 35.0%
! TTTTTGTGATATTTGCCGGA+AGG + chr1_3:64185479-64185498 Msa0132920:CDS 35.0%
AATATCAGGGAATTTATGCG+GGG - chr1_3:64185572-64185591 None:intergenic 35.0%
CAATATCAGGGAATTTATGC+GGG - chr1_3:64185573-64185592 None:intergenic 35.0%
CCAATATCAGGGAATTTATG+CGG - chr1_3:64185574-64185593 None:intergenic 35.0%
GAGAGATTTGAACGTGAAAA+CGG - chr1_3:64185635-64185654 None:intergenic 35.0%
TTGTTCCAGTTTCTCAATCA+AGG - chr1_3:64185677-64185696 None:intergenic 35.0%
ACCCAATAACAATGTAGTAC+AGG + chr1_3:64185890-64185909 Msa0132920:three_prime_UTR 35.0%
CATATATACTTACAGTGAGC+AGG - chr1_3:64186008-64186027 None:intergenic 35.0%
AGATGTCCGAGAAGAAGAAT+AGG - chr1_3:64184837-64184856 None:intergenic 40.0%
TATTCTTCTTCTCGGACATC+TGG + chr1_3:64184836-64184855 Msa0132920:CDS 40.0%
! GCTAGAAAGAATTTGGGTTC+TGG - chr1_3:64185084-64185103 None:intergenic 40.0%
TGCAGGGCTAGAAAGAATTT+GGG - chr1_3:64185090-64185109 None:intergenic 40.0%
TTGCAGGGCTAGAAAGAATT+TGG - chr1_3:64185091-64185110 None:intergenic 40.0%
AGGTTGTTGGATATGTTGCA+GGG - chr1_3:64185106-64185125 None:intergenic 40.0%
TAGGTTGTTGGATATGTTGC+AGG - chr1_3:64185107-64185126 None:intergenic 40.0%
CAACATATCCAACAACCTAG+TGG + chr1_3:64185108-64185127 Msa0132920:intron 40.0%
ACATATCCAACAACCTAGTG+GGG + chr1_3:64185110-64185129 Msa0132920:intron 40.0%
TTTAAGAGTCAAGAGGACGA+TGG - chr1_3:64185277-64185296 None:intergenic 40.0%
ATCCACACTCACTTCTTGAT+CGG - chr1_3:64185336-64185355 None:intergenic 40.0%
ACAAATGGACCAATCGGTAT+TGG - chr1_3:64185370-64185389 None:intergenic 40.0%
! AAATTTGCAGTCCGGTTTGA+TGG + chr1_3:64185414-64185433 Msa0132920:intron 40.0%
CCGCATAAATTCCCTGATAT+TGG + chr1_3:64185571-64185590 Msa0132920:intron 40.0%
! AGGCTTTCTTTTCGTCATCA+CGG - chr1_3:64185657-64185676 None:intergenic 40.0%
GAAAGCCTTGATTGAGAAAC+TGG + chr1_3:64185669-64185688 Msa0132920:CDS 40.0%
TCTTATATGAGAACTGCAGG+CGG - chr1_3:64185811-64185830 None:intergenic 40.0%
CTCTCTTATATGAGAACTGC+AGG - chr1_3:64185814-64185833 None:intergenic 40.0%
GCAGTTCTCATATAAGAGAG+AGG + chr1_3:64185814-64185833 Msa0132920:three_prime_UTR 40.0%
ACGCTTCCATAAAAACTGGA+TGG - chr1_3:64186049-64186068 None:intergenic 40.0%
CAACACGCTTCCATAAAAAC+TGG - chr1_3:64186053-64186072 None:intergenic 40.0%
!! CAGTTTTTATGGAAGCGTGT+TGG + chr1_3:64186051-64186070 Msa0132920:three_prime_UTR 40.0%
AGATGTCCGAGAAGAAGAAT+AGG - chr1_3:64184837-64184856 None:intergenic 40.0%
TATTCTTCTTCTCGGACATC+TGG + chr1_3:64184836-64184855 Msa0132920:CDS 40.0%
! GCTAGAAAGAATTTGGGTTC+TGG - chr1_3:64185084-64185103 None:intergenic 40.0%
TGCAGGGCTAGAAAGAATTT+GGG - chr1_3:64185090-64185109 None:intergenic 40.0%
TTGCAGGGCTAGAAAGAATT+TGG - chr1_3:64185091-64185110 None:intergenic 40.0%
AGGTTGTTGGATATGTTGCA+GGG - chr1_3:64185106-64185125 None:intergenic 40.0%
TAGGTTGTTGGATATGTTGC+AGG - chr1_3:64185107-64185126 None:intergenic 40.0%
CAACATATCCAACAACCTAG+TGG + chr1_3:64185108-64185127 Msa0132920:intron 40.0%
ACATATCCAACAACCTAGTG+GGG + chr1_3:64185110-64185129 Msa0132920:intron 40.0%
TTTAAGAGTCAAGAGGACGA+TGG - chr1_3:64185277-64185296 None:intergenic 40.0%
ATCCACACTCACTTCTTGAT+CGG - chr1_3:64185336-64185355 None:intergenic 40.0%
ACAAATGGACCAATCGGTAT+TGG - chr1_3:64185370-64185389 None:intergenic 40.0%
! AAATTTGCAGTCCGGTTTGA+TGG + chr1_3:64185414-64185433 Msa0132920:intron 40.0%
CCGCATAAATTCCCTGATAT+TGG + chr1_3:64185571-64185590 Msa0132920:intron 40.0%
! AGGCTTTCTTTTCGTCATCA+CGG - chr1_3:64185657-64185676 None:intergenic 40.0%
GAAAGCCTTGATTGAGAAAC+TGG + chr1_3:64185669-64185688 Msa0132920:CDS 40.0%
TCTTATATGAGAACTGCAGG+CGG - chr1_3:64185811-64185830 None:intergenic 40.0%
CTCTCTTATATGAGAACTGC+AGG - chr1_3:64185814-64185833 None:intergenic 40.0%
GCAGTTCTCATATAAGAGAG+AGG + chr1_3:64185814-64185833 Msa0132920:three_prime_UTR 40.0%
ACGCTTCCATAAAAACTGGA+TGG - chr1_3:64186049-64186068 None:intergenic 40.0%
CAACACGCTTCCATAAAAAC+TGG - chr1_3:64186053-64186072 None:intergenic 40.0%
!! CAGTTTTTATGGAAGCGTGT+TGG + chr1_3:64186051-64186070 Msa0132920:three_prime_UTR 40.0%
CTTGAAACAGGACTCTGCTA+CGG + chr1_3:64184777-64184796 Msa0132920:CDS 45.0%
GGAGGCTGTTACTAGCAATA+AGG - chr1_3:64185164-64185183 None:intergenic 45.0%
AGAGGACGATGGAAAATCCA+TGG - chr1_3:64185266-64185285 None:intergenic 45.0%
CGGTGAAGGTAAACGAAATG+CGG - chr1_3:64185316-64185335 None:intergenic 45.0%
ACTCACTTCTTGATCGGTGA+AGG - chr1_3:64185330-64185349 None:intergenic 45.0%
GAAATTCACTCAGCCCATCA+AGG + chr1_3:64185501-64185520 Msa0132920:CDS 45.0%
CTTGAAACAGGACTCTGCTA+CGG + chr1_3:64184777-64184796 Msa0132920:CDS 45.0%
GGAGGCTGTTACTAGCAATA+AGG - chr1_3:64185164-64185183 None:intergenic 45.0%
AGAGGACGATGGAAAATCCA+TGG - chr1_3:64185266-64185285 None:intergenic 45.0%
CGGTGAAGGTAAACGAAATG+CGG - chr1_3:64185316-64185335 None:intergenic 45.0%
ACTCACTTCTTGATCGGTGA+AGG - chr1_3:64185330-64185349 None:intergenic 45.0%
GAAATTCACTCAGCCCATCA+AGG + chr1_3:64185501-64185520 Msa0132920:CDS 45.0%
!!! TTTTATAATTTAATTAAGAT+TGG - chr1_3:64185943-64185962 None:intergenic 5.0%
!!! TTTTATAATTTAATTAAGAT+TGG - chr1_3:64185943-64185962 None:intergenic 5.0%
TATCCAACAACCTAGTGGGG+TGG + chr1_3:64185113-64185132 Msa0132920:intron 50.0%
CACCGATCAAGAAGTGAGTG+TGG + chr1_3:64185331-64185350 Msa0132920:intron 50.0%
AGTTCCGTCGTCCATCAAAC+CGG - chr1_3:64185428-64185447 None:intergenic 50.0%
GGGCTGAGTGAATTTCCTTC+CGG - chr1_3:64185497-64185516 None:intergenic 50.0%
ATACCAGCTCCAATACACCC+TGG + chr1_3:64185717-64185736 Msa0132920:three_prime_UTR 50.0%
TACCAGCTCCAATACACCCT+GGG + chr1_3:64185718-64185737 Msa0132920:three_prime_UTR 50.0%
TATCCAACAACCTAGTGGGG+TGG + chr1_3:64185113-64185132 Msa0132920:intron 50.0%
CACCGATCAAGAAGTGAGTG+TGG + chr1_3:64185331-64185350 Msa0132920:intron 50.0%
AGTTCCGTCGTCCATCAAAC+CGG - chr1_3:64185428-64185447 None:intergenic 50.0%
GGGCTGAGTGAATTTCCTTC+CGG - chr1_3:64185497-64185516 None:intergenic 50.0%
ATACCAGCTCCAATACACCC+TGG + chr1_3:64185717-64185736 Msa0132920:three_prime_UTR 50.0%
TACCAGCTCCAATACACCCT+GGG + chr1_3:64185718-64185737 Msa0132920:three_prime_UTR 50.0%
TGCTACGGCAAGCTAGAAGC+TGG + chr1_3:64184792-64184811 Msa0132920:CDS 55.0%
TCATCTGCAGCCCTGCAGAT+TGG - chr1_3:64185140-64185159 None:intergenic 55.0%
! CAGTCCGGTTTGATGGACGA+CGG + chr1_3:64185421-64185440 Msa0132920:intron 55.0%
ACCAGCTCCAATACACCCTG+GGG + chr1_3:64185719-64185738 Msa0132920:three_prime_UTR 55.0%
! GGTGGACTCCTTGAACTCGT+AGG + chr1_3:64185741-64185760 Msa0132920:three_prime_UTR 55.0%
TGCTACGGCAAGCTAGAAGC+TGG + chr1_3:64184792-64184811 Msa0132920:CDS 55.0%
TCATCTGCAGCCCTGCAGAT+TGG - chr1_3:64185140-64185159 None:intergenic 55.0%
! CAGTCCGGTTTGATGGACGA+CGG + chr1_3:64185421-64185440 Msa0132920:intron 55.0%
ACCAGCTCCAATACACCCTG+GGG + chr1_3:64185719-64185738 Msa0132920:three_prime_UTR 55.0%
! GGTGGACTCCTTGAACTCGT+AGG + chr1_3:64185741-64185760 Msa0132920:three_prime_UTR 55.0%
GGTCCACCCCACTAGGTTGT+TGG - chr1_3:64185119-64185138 None:intergenic 60.0%
! GCAGATTGGTCCACCCCACT+AGG - chr1_3:64185126-64185145 None:intergenic 60.0%
AGTGGGGTGGACCAATCTGC+AGG + chr1_3:64185126-64185145 Msa0132920:intron 60.0%
GTGGGGTGGACCAATCTGCA+GGG + chr1_3:64185127-64185146 Msa0132920:intron 60.0%
CCAGCTCCAATACACCCTGG+GGG + chr1_3:64185720-64185739 Msa0132920:three_prime_UTR 60.0%
AGTCCACCCCCAGGGTGTAT+TGG - chr1_3:64185729-64185748 None:intergenic 60.0%
GTTCAAGGAGTCCACCCCCA+GGG - chr1_3:64185737-64185756 None:intergenic 60.0%
AGTTCAAGGAGTCCACCCCC+AGG - chr1_3:64185738-64185757 None:intergenic 60.0%
GGTCCACCCCACTAGGTTGT+TGG - chr1_3:64185119-64185138 None:intergenic 60.0%
! GCAGATTGGTCCACCCCACT+AGG - chr1_3:64185126-64185145 None:intergenic 60.0%
AGTGGGGTGGACCAATCTGC+AGG + chr1_3:64185126-64185145 Msa0132920:intron 60.0%
GTGGGGTGGACCAATCTGCA+GGG + chr1_3:64185127-64185146 Msa0132920:intron 60.0%
CCAGCTCCAATACACCCTGG+GGG + chr1_3:64185720-64185739 Msa0132920:three_prime_UTR 60.0%
AGTCCACCCCCAGGGTGTAT+TGG - chr1_3:64185729-64185748 None:intergenic 60.0%
GTTCAAGGAGTCCACCCCCA+GGG - chr1_3:64185737-64185756 None:intergenic 60.0%
AGTTCAAGGAGTCCACCCCC+AGG - chr1_3:64185738-64185757 None:intergenic 60.0%
CCCCCAGGGTGTATTGGAGC+TGG - chr1_3:64185723-64185742 None:intergenic 65.0%
GCTCCAATACACCCTGGGGG+TGG + chr1_3:64185723-64185742 Msa0132920:three_prime_UTR 65.0%
CCCCCAGGGTGTATTGGAGC+TGG - chr1_3:64185723-64185742 None:intergenic 65.0%
GCTCCAATACACCCTGGGGG+TGG + chr1_3:64185723-64185742 Msa0132920:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64184750 64186084 64184750 ID=Msa0132920;Name=Msa0132920
chr1_3 mRNA 64184750 64186084 64184750 ID=Msa0132920-mRNA-1;Parent=Msa0132920;Name=Msa0132920-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|1|1|1|1|3|370|102
chr1_3 exon 64184750 64184857 64184750 ID=Msa0132920-mRNA-1:exon:21492;Parent=Msa0132920-mRNA-1
chr1_3 exon 64185424 64185522 64185424 ID=Msa0132920-mRNA-1:exon:21493;Parent=Msa0132920-mRNA-1
chr1_3 exon 64185613 64186084 64185613 ID=Msa0132920-mRNA-1:exon:21494;Parent=Msa0132920-mRNA-1
chr1_3 CDS 64184750 64184857 64184750 ID=Msa0132920-mRNA-1:cds;Parent=Msa0132920-mRNA-1
chr1_3 CDS 64185424 64185522 64185424 ID=Msa0132920-mRNA-1:cds;Parent=Msa0132920-mRNA-1
chr1_3 CDS 64185613 64185714 64185613 ID=Msa0132920-mRNA-1:cds;Parent=Msa0132920-mRNA-1
chr1_3 three_prime_UTR 64185715 64186084 64185715 ID=Msa0132920-mRNA-1:three_prime_utr;Parent=Msa0132920-mRNA-1
Gene Sequence

>Msa0132920

TTAACTGTATTGATATCATCTTGTATTCTTGAAACAGGACTCTGCTACGGCAAGCTAGAAGCTGGAGCACTCACGTTTATTATTCCTATTCTTCTTCTCGGACATCTGTCCGGTTTGATGGACGACGGAACTAAACTTACTTTGCTTGCTTTATGGATGGGTCTTTTTGTGATATTTGCCGGAAGGAAATTCACTCAGCCCATCAAGGATGACATCGGTGACAAGTCCGTTTTCACGTTCAAATCTCTCCGTGATGACGAAAAGAAAGCCTTGATTGAGAAACTGGAACAACAAAAAACTCAGTATTAA

Protein sequence

>Msa0132920

LTVLISSCILETGLCYGKLEAGALTFIIPILLLGHLSGLMDDGTKLTLLALWMGLFVIFAGRKFTQPIKDDIGDKSVFTFKSLRDDEKKALIEKLEQQKTQY*