AlfalfaGEDB | Msa1127990

M. sativa cultivar zhongmu-4 / Msa1127990

KEGG: K12126
GO: GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1127990	ABD33186.1	91.185	692	46	6	10	689	1	689	0.0	1255

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1127990	sp\|Q0JNI9\|PIL15_ORYSJ	37.076	383	178	15	246	612	212	547	1.84e-47	181

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1127990	Q2HRT7	91.185	692	46	6	10	689	1	689	0.0	1255

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1127990	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1040280	Msa1127990	0.816925	4.300734e-52	-8.615850e-47
Msa1127990	Msa1351810	0.816972	4.197418e-52	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1127990	MtrunA17_Chr7g0271251	90.157	701	47	6	1	689	1	691	0.0	1254
Msa1127990	MtrunA17_Chr1g0193321	47.312	744	290	19	2	677	1	710	0.0	568
Msa1127990	MtrunA17_Chr1g0182791	41.981	212	81	6	371	552	260	459	1.66e-34	138
Msa1127990	MtrunA17_Chr7g0262691	40.541	222	89	8	370	559	189	399	3.39e-32	130
Msa1127990	MtrunA17_Chr3g0095391	35.806	310	135	11	243	544	148	401	1.97e-31	128
Msa1127990	MtrunA17_Chr7g0270871	49.655	145	53	6	377	515	152	282	1.06e-27	115
Msa1127990	MtrunA17_Chr1g0153241	52.577	97	35	2	431	527	86	171	2.42e-22	97.4
Msa1127990	MtrunA17_Chr5g0402031	53.398	103	32	4	439	540	114	201	3.25e-21	95.9
Msa1127990	MtrunA17_Chr7g0231461	41.667	108	54	2	394	500	260	359	9.87e-18	86.7
Msa1127990	MtrunA17_Chr4g0074161	44.048	84	36	2	432	512	208	283	1.48e-15	79.3

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1127990	AT1G09530.3	31.933	595	274	20	2	587	1	473	9.87e-48	176
Msa1127990	AT1G09530.2	31.933	595	274	20	2	587	1	473	9.87e-48	176
Msa1127990	AT1G09530.5	31.933	595	274	20	2	587	1	473	9.87e-48	176
Msa1127990	AT1G09530.1	31.933	595	274	20	2	587	1	473	9.87e-48	176
Msa1127990	AT1G09530.4	31.933	595	274	20	2	587	1	473	9.87e-48	176
Msa1127990	AT1G09530.6	31.933	595	274	20	2	587	1	473	9.87e-48	176
Msa1127990	AT2G46970.2	36.531	271	132	11	368	628	130	370	1.90e-29	121
Msa1127990	AT2G46970.3	36.531	271	132	11	368	628	139	379	2.20e-29	121
Msa1127990	AT2G46970.1	36.531	271	132	11	368	628	161	401	3.46e-29	121
Msa1127990	AT2G20180.7	40.206	194	79	7	371	544	155	331	8.45e-28	117

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

Find 175 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTGATCATGGACG+AGG	0.629711	7_3:-79750181	Msa1127990:CDS
AAAATGGGTGAAATTCATTA+CGG	0.424400	7_3:+79750810	None:intergenic
AAACAAGGTATCCTTTCCAA+GGG	0.605300	7_3:-79751039	Msa1127990:CDS
AAAGCATGTTACTAAATTCC+GGG	0.438941	7_3:-79747686	Msa1127990:three_prime_UTR
AAAGCTAATCTTCAGAACAT+TGG	0.503501	7_3:-79750766	Msa1127990:CDS
AAATCTAATTGATTCAAATG+AGG	0.470228	7_3:+79750924	None:intergenic
AACAAAGATGCAGCTGTGAT+AGG	0.462201	7_3:-79750706	Msa1127990:CDS
AACAAATCAAATGTCTATCC+AGG	0.503101	7_3:-79748773	Msa1127990:intron
AACATTAAAGGACCTTCCTA+AGG	0.548974	7_3:+79747494	None:intergenic
AACATTGAAGCACATGGCAT+TGG	0.518946	7_3:+79748964	None:intergenic

Showing 1 to 10 of 175 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTCAAACAAATCGTTTCT+GGG	+	chr7_3:79747817-79747836	None:intergenic	30.0%
AAGGGTCATGATAAATATTC+AGG	-	chr7_3:79747919-79747938	Msa1127990:three_prime_UTR	30.0%
TTTAGTGACTCTCATAAACA+AGG	-	chr7_3:79748210-79748229	Msa1127990:three_prime_UTR	30.0%
AGATTTAGAGAATCAGGTTT+AGG	-	chr7_3:79748357-79748376	Msa1127990:intron	30.0%
AAAGCTAATCTTCAGAACAT+TGG	-	chr7_3:79748498-79748517	Msa1127990:intron	30.0%
ATTGGAAGTTTGATCAACTT+TGG	+	chr7_3:79748757-79748776	None:intergenic	30.0%
GAACCTGAAGAAAGAAAAAA+AGG	+	chr7_3:79749373-79749392	None:intergenic	30.0%
ATCAAAATTCGAAGGATTGA+AGG	+	chr7_3:79749973-79749992	None:intergenic	30.0%
TTTACGCAGATTATGACAAT+GGG	-	chr7_3:79750042-79750061	Msa1127990:intron	30.0%
TAAGAAAACATTGAAGCACA+TGG	+	chr7_3:79750309-79750328	None:intergenic	30.0%

Showing 1 to 10 of 271 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	79747446	79751840	79747446	ID=Msa1127990;Name=Msa1127990
chr7_3	mRNA	79747446	79751840	79747446	ID=Msa1127990-mRNA-1;Parent=Msa1127990;Name=Msa1127990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=162\|0.83\|0.85\|1\|1\|1\|7\|792\|689
chr7_3	exon	79747446	79748351	79747446	ID=Msa1127990-mRNA-1:exon:22648;Parent=Msa1127990-mRNA-1
chr7_3	exon	79748774	79749235	79748774	ID=Msa1127990-mRNA-1:exon:22647;Parent=Msa1127990-mRNA-1
chr7_3	exon	79749346	79749411	79749346	ID=Msa1127990-mRNA-1:exon:22646;Parent=Msa1127990-mRNA-1
chr7_3	exon	79749898	79749987	79749898	ID=Msa1127990-mRNA-1:exon:22645;Parent=Msa1127990-mRNA-1
chr7_3	exon	79750126	79750230	79750126	ID=Msa1127990-mRNA-1:exon:22644;Parent=Msa1127990-mRNA-1
chr7_3	exon	79750333	79751473	79750333	ID=Msa1127990-mRNA-1:exon:22643;Parent=Msa1127990-mRNA-1
chr7_3	exon	79751587	79751840	79751587	ID=Msa1127990-mRNA-1:exon:22642;Parent=Msa1127990-mRNA-1
chr7_3	five_prime_UTR	79751679	79751840	79751679	ID=Msa1127990-mRNA-1:five_prime_utr;Parent=Msa1127990-mRNA-1
chr7_3	CDS	79751587	79751678	79751587	ID=Msa1127990-mRNA-1:cds;Parent=Msa1127990-mRNA-1
chr7_3	CDS	79750333	79751473	79750333	ID=Msa1127990-mRNA-1:cds;Parent=Msa1127990-mRNA-1
chr7_3	CDS	79750126	79750230	79750126	ID=Msa1127990-mRNA-1:cds;Parent=Msa1127990-mRNA-1
chr7_3	CDS	79749898	79749987	79749898	ID=Msa1127990-mRNA-1:cds;Parent=Msa1127990-mRNA-1
chr7_3	CDS	79749346	79749411	79749346	ID=Msa1127990-mRNA-1:cds;Parent=Msa1127990-mRNA-1
chr7_3	CDS	79748774	79749235	79748774	ID=Msa1127990-mRNA-1:cds;Parent=Msa1127990-mRNA-1
chr7_3	CDS	79748238	79748351	79748238	ID=Msa1127990-mRNA-1:cds;Parent=Msa1127990-mRNA-1
chr7_3	three_prime_UTR	79747446	79748237	79747446	ID=Msa1127990-mRNA-1:three_prime_utr;Parent=Msa1127990-mRNA-1

Gene Sequence

>Msa1127990

ATGATGCCTCTGCATGAGTTATGCCACATGTCTAAAGAAAAAGTTGATCATAAAGAGATGAACAATTCTTGTACCCCAGATCAATCATCTGTACCCAGAAACGATTTGTTTGAGTTGGTTTGGCAAAATGACCAGATTTTAGTGCATGGTCAATCTAGTAATTCCAATAGAGCTAAAACGAGTCCATCTCATACTCTTAAGGGTCATGATAAATATTCAGGACAACATGCTAATGAAACAAATACAAGGATAGGAAAGTTTGAGGATTTAGATAACGGTTTGAATGAAATTATTACAAGGCCTGTTTCTTCAAGTCAAGATGAAGATTTGATGACGATGATGCCTTGGTTGAATTGTGCAATGGATGATGAACACTATTTACATCGTAGTTCTGGTTTCTTACATGAACTATCTGGTGCCACTACAAATGACTTTGCTGCCACAAATAAATTTTCTTTGCTTGATAGAAAAAGTAATTGTATTCAAGTATTTAGTGACTCTCATAAACAAGGTATCCTTTCCAAGGGTTCTTCACTTGCAATTGAAGATTTTGATACCTCGGGACTAAAAACTAGCACCAATCAGTTAAATATGCCGTCGTTGTTGCATCAATGTCAACCCTCATTTGAATCAATTAGATTTAGAGAATCAGGTTTAGGTGAGAATAATACAAAAGGTAATGCAAACCAGCATGCACATTGTGAAGAAATCTCTCATATCCCATCTTCCTCAACCGTAATGAATTTCACCCATTTTGCAAAACCTGCGGCTATTGTGAAAGCTAATCTTCAGAACATTGGTTTCTCTTCATCAAGACCAGAACGTGTGGGAGCAAAGAACAAAGATGCAGCTGTGATAGGAAGTAATCCTTGCGAATCATCAAAAGTTGATTTAAGTGGAGAATGTCCAAAAAGTTCAGCCATACATTGTCATCAGTCAGTGGAGCCATCCAGGGTTGATTTGAAACCTTTGGAGCCGAAATCTCTTGAGAAAAACACTAGTGTTTCTACTCCTGCTTGCAAAGAAGATGTATCCAAAGTTGATCAAACTTCCAATCAAGTTCTTGGTGAGAGTCGCAGAAAAGGTCAAGAATCTTTTAAAAAATCTACGGAGCTAACAGTAGTCTCTTCCTCTGTTTGCTCTGACAATGGCGCGTATAGAAGTTCAGATGATGCAAATCAAAATTTGAAGCGAAAAAATCTGGACTATGAGGATTCTGAGTGGCACAGTGAAGATTTTGAAGATGAATCAATTGGTGTTAAAAGAACTGATCATGGACGAGGTGTTATGGGCTCAAAGAAAAATCGTTCAGCCGAAGTGCACAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAGGATGCGTGCATTGCAAGAACTCATACCGAATTGCAACAAGGTTGACCTTTTTTTCTTTCTTCAGGCGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAATCACTTCAACTCCAACTGCAAATTATGACAATGGGAAGTCATGGTTTATACATGCCTATGACGTTACCAGCAGGAATGCAGCACATGCATGCGGCTCACATGTTTCCCTTTTCACCCATGAGTGTTGCCATGCAAATGGGGTTGGGGGTGCCTCAATTTCAAGGAACTCACCTTCCTGTTGCACATACATCTGGACTTGCTGCTTTACATGGGATGGCAAGACCAAATCCTCAATTGTTTGGGCTTCAAGCTGGTCAGGGACTGCACATGCCAATGCCATGTGCTTCAATGTTTTCTTATCCCGGAGAGCCTGTTACGAACTCATCAGCTGTAGAATTAAATGCTAGTGGAACAGCAGGACTAATGGAAACCGTGGAATCGGCTTCACCCTCTAAGTTAAAGGATCCAATGTCAAATGTGAACTCACAAGTAGTTATGCTTAAAAACAAGGGATGTAACTCAACAAATCAAATGTCTATCCAGTGTGAAGCAACAACCGGTGGACTTGAACAATCAAAAGTGGTACTCGATAGTGCCCATGCTTTGCTGGAAAATGACAAAAGAGACAACGTTGAGATTGATAAATCTCATGAGTAA

Protein sequence

>Msa1127990

MMPLHELCHMSKEKVDHKEMNNSCTPDQSSVPRNDLFELVWQNDQILVHGQSSNSNRAKTSPSHTLKGHDKYSGQHANETNTRIGKFEDLDNGLNEIITRPVSSSQDEDLMTMMPWLNCAMDDEHYLHRSSGFLHELSGATTNDFAATNKFSLLDRKSNCIQVFSDSHKQGILSKGSSLAIEDFDTSGLKTSTNQLNMPSLLHQCQPSFESIRFRESGLGENNTKGNANQHAHCEEISHIPSSSTVMNFTHFAKPAAIVKANLQNIGFSSSRPERVGAKNKDAAVIGSNPCESSKVDLSGECPKSSAIHCHQSVEPSRVDLKPLEPKSLEKNTSVSTPACKEDVSKVDQTSNQVLGESRRKGQESFKKSTELTVVSSSVCSDNGAYRSSDDANQNLKRKNLDYEDSEWHSEDFEDESIGVKRTDHGRGVMGSKKNRSAEVHNLSERRRRDRINERMRALQELIPNCNKVDLFFFLQADKASMLDEAIEYLKSLQLQLQIMTMGSHGLYMPMTLPAGMQHMHAAHMFPFSPMSVAMQMGLGVPQFQGTHLPVAHTSGLAALHGMARPNPQLFGLQAGQGLHMPMPCASMFSYPGEPVTNSSAVELNASGTAGLMETVESASPSKLKDPMSNVNSQVVMLKNKGCNSTNQMSIQCEATTGGLEQSKVVLDSAHALLENDKRDNVEIDKSHE*