AlfalfaGEDB | Msa0038440

M. sativa cultivar zhongmu-4 / Msa0038440

KEGG: K02703|K03243
GO: GO:0000166 GO:0001882 GO:0001883 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033290 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0070993 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00009.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038440	sp\|Q10251\|IF2P_SCHPO	59.709	618	230	7	687	1292	468	1078	0.0	760

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038440	A0A396JVW8	93.912	1347	22	5	1	1293	1	1341	0.0	2009

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0038440	0.800546	1.369929e-48	-8.615850e-47
Msa0002560	Msa0038440	0.825216	5.289126e-54	-8.615850e-47
Msa0002680	Msa0038440	0.812719	3.680631e-51	-8.615850e-47
Msa0003220	Msa0038440	0.827085	1.900339e-54	-8.615850e-47
Msa0003270	Msa0038440	0.802918	4.466828e-49	-8.615850e-47
Msa0006880	Msa0038440	0.824627	7.287368e-54	-8.615850e-47
Msa0007850	Msa0038440	0.813590	2.369605e-51	-8.615850e-47
Msa0010770	Msa0038440	0.829967	3.826999e-55	-8.615850e-47
Msa0012940	Msa0038440	0.843111	1.713151e-58	-8.615850e-47
Msa0016540	Msa0038440	0.813850	2.077544e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038440	MtrunA17_Chr1g0202021	93.912	1347	22	5	1	1293	1	1341	0.0	2009
Msa0038440	MtrunA17_Chr1g0201991	88.647	643	73	0	651	1293	184	826	0.0	1193
Msa0038440	MtrunA17_Chr4g0000221	67.097	465	116	9	665	1123	2	435	0.0	589
Msa0038440	MtrunA17_Chr4g0000991	62.850	428	108	6	632	1058	19	396	3.78e-170	511
Msa0038440	MtrunA17_Chr7g0264901	58.580	338	135	2	691	1027	25	358	7.35e-124	389
Msa0038440	MtrunA17_Chr4g0004141	62.257	257	58	5	1015	1264	216	440	5.54e-86	287
Msa0038440	MtrunA17_Chr4g0004141	53.304	227	72	5	702	925	13	208	4.28e-68	236
Msa0038440	MtrunA17_Chr7g0264471	47.143	280	137	3	698	975	51	321	1.53e-77	260
Msa0038440	MtrunA17_Chr7g0263861	72.180	133	34	1	1060	1192	144	273	2.80e-56	196
Msa0038440	MtrunA17_Chr2g0312621	27.000	500	253	17	702	1162	495	921	8.47e-27	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038440	AT1G76810.1	66.023	1192	334	23	142	1293	134	1294	0.0	1212
Msa0038440	AT1G76720.2	60.214	1307	386	36	1	1271	11	1219	0.0	1144
Msa0038440	AT1G76720.1	59.877	1306	369	35	1	1271	1	1186	0.0	1138
Msa0038440	AT1G21160.1	58.624	1032	363	19	293	1293	94	1092	0.0	1019
Msa0038440	AT2G27700.1	70.722	485	130	5	662	1145	5	478	0.0	688
Msa0038440	AT2G27700.2	70.576	486	130	6	662	1145	5	479	0.0	683
Msa0038440	AT1G17220.1	27.122	483	245	18	702	1150	500	909	2.43e-26	117
Msa0038440	AT4G11160.3	38.346	133	60	2	702	830	218	332	4.90e-21	99.8
Msa0038440	AT4G11160.1	23.446	563	323	16	702	1231	216	703	1.80e-19	95.1
Msa0038440	AT4G11160.2	23.446	563	323	16	702	1231	218	705	3.21e-19	94.4

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Find 363 sgRNAs with CRISPR-Local

Find 657 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAATCTCATAAAT+GGG	0.380417	1_1:+67920524	Msa0038440:exon
AAAACGAAAATTGCTTTGTG+CGG	0.632518	1_1:-67920405	None:intergenic
AAAAGAATAAGAAGAAGAGT+GGG	0.502262	1_1:+67921455	Msa0038440:CDS
AAAAGTGGTGGTGGTAGTAG+TGG	0.574855	1_1:+67920845	Msa0038440:CDS
AAAATCAAAGAAGAAGGCTC+CGG	0.604903	1_1:+67920604	Msa0038440:CDS
AAACCCTAATCTCATAAATG+GGG	0.655994	1_1:+67920525	Msa0038440:exon
AAAGAAAGAATCTGCGGATG+AGG	0.496199	1_1:+67926175	Msa0038440:CDS
AAAGAAATCAAAGCTGCTAT+GGG	0.542406	1_1:+67925579	Msa0038440:CDS
AAAGGCAGCTTTGGAAGACG+TGG	0.608385	1_1:+67925809	Msa0038440:CDS
AAAGGTTGAAGAAGTGGAGA+TGG	0.518426	1_1:+67922278	Msa0038440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAAAAACACAGTAGCGAA+TGG	-	chr1_1:67920342-67920361	None:intergenic	30.0%
AAAACGAAAATTGCTTTGTG+CGG	-	chr1_1:67920408-67920427	None:intergenic	30.0%
GTACGAAATTTGTGTAAAAG+GGG	-	chr1_1:67920483-67920502	None:intergenic	30.0%
CGTACGAAATTTGTGTAAAA+GGG	-	chr1_1:67920484-67920503	None:intergenic	30.0%
TCGTACGAAATTTGTGTAAA+AGG	-	chr1_1:67920485-67920504	None:intergenic	30.0%
GAAAACCCTAATCTCATAAA+TGG	+	chr1_1:67920523-67920542	Msa0038440:exon	30.0%
AAACCCTAATCTCATAAATG+GGG	+	chr1_1:67920525-67920544	Msa0038440:exon	30.0%
GATGACGATGAATATTCTAT+CGG	+	chr1_1:67920632-67920651	Msa0038440:CDS	30.0%
AAAGGGAAATCGAAAAAAAG+TGG	+	chr1_1:67920830-67920849	Msa0038440:CDS	30.0%
TTCATTGAGTAAAGCTATTC+CGG	+	chr1_1:67921180-67921199	Msa0038440:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	67920282	67928649	67920282	ID=Msa0038440;Name=Msa0038440
chr1_1	mRNA	67920282	67928649	67920282	ID=Msa0038440-mRNA-1;Parent=Msa0038440;Name=Msa0038440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=260\|1\|1\|1\|1\|1\|12\|640\|1293
chr1_1	exon	67920282	67922498	67920282	ID=Msa0038440-mRNA-1:exon:22051;Parent=Msa0038440-mRNA-1
chr1_1	exon	67923207	67923730	67923207	ID=Msa0038440-mRNA-1:exon:22052;Parent=Msa0038440-mRNA-1
chr1_1	exon	67923816	67923923	67923816	ID=Msa0038440-mRNA-1:exon:22053;Parent=Msa0038440-mRNA-1
chr1_1	exon	67924015	67924115	67924015	ID=Msa0038440-mRNA-1:exon:22054;Parent=Msa0038440-mRNA-1
chr1_1	exon	67924775	67924865	67924775	ID=Msa0038440-mRNA-1:exon:22055;Parent=Msa0038440-mRNA-1
chr1_1	exon	67924962	67925072	67924962	ID=Msa0038440-mRNA-1:exon:22056;Parent=Msa0038440-mRNA-1
chr1_1	exon	67925147	67925212	67925147	ID=Msa0038440-mRNA-1:exon:22057;Parent=Msa0038440-mRNA-1
chr1_1	exon	67925561	67925620	67925561	ID=Msa0038440-mRNA-1:exon:22058;Parent=Msa0038440-mRNA-1
chr1_1	exon	67925738	67926295	67925738	ID=Msa0038440-mRNA-1:exon:22059;Parent=Msa0038440-mRNA-1
chr1_1	exon	67926702	67926821	67926702	ID=Msa0038440-mRNA-1:exon:22060;Parent=Msa0038440-mRNA-1
chr1_1	exon	67927157	67927276	67927157	ID=Msa0038440-mRNA-1:exon:22061;Parent=Msa0038440-mRNA-1
chr1_1	exon	67927944	67928649	67927944	ID=Msa0038440-mRNA-1:exon:22062;Parent=Msa0038440-mRNA-1
chr1_1	five_prime_UTR	67920282	67920541	67920282	ID=Msa0038440-mRNA-1:five_prime_utr;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67920542	67922498	67920542	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67923207	67923730	67923207	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67923816	67923923	67923816	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67924015	67924115	67924015	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67924775	67924865	67924775	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67924962	67925072	67924962	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67925147	67925212	67925147	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67925561	67925620	67925561	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67925738	67926295	67925738	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67926702	67926821	67926702	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67927157	67927276	67927157	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	CDS	67927944	67928009	67927944	ID=Msa0038440-mRNA-1:cds;Parent=Msa0038440-mRNA-1
chr1_1	three_prime_UTR	67928010	67928649	67928010	ID=Msa0038440-mRNA-1:three_prime_utr;Parent=Msa0038440-mRNA-1

Gene Sequence

>Msa0038440

ATGGGGAAGAAGAAGCCAGCAATCCGCGACGACGAGAATCCTCCGCCGCAACAAGGCGGTGGAAAATCAAAGAAGAAGGCTCCGGTTATCGATGACGATGAATATTCTATCGGAGTGGAGGAGGTGTCAGAGGATGCGGCTCCGGTTGCGGTGGAAGAGAAACCCGGGAAAAAGAAAGGTAAGAAAGGTAATGCTAAATCCAAAAAAGATAATGATGATGATGATTTTGATGATGCTGTTGTTGTTGATGATGATGATGTGAATGAAATTGTTTTTGCTGGGAAGAAAAAAGGGAAATCGAAAAAAAGTGGTGGTGGTAGTAGTGGTGGAAGTGTGTTTGCTTCTGGATTTGGTGTGCTTGGTGATGAGGACGATGTTGATAATGATGATGAAGAGAAATCGGAGGTAACCGGTGAGGGCGATGACGATGAGGATGAACCGGTTGTTAGCTTTACAGGGAAGAAGAAATCCTCGAAGGGTTCGAAGAAAGGGGGAAGTAGTTTGTTCAGTGCATTAGATGAGAATGATGATGGAGAAGAGGAGAGTAAGAATGAAAAGGTAGAAGACGATGATGATGAACCAATCACTTTCTCGGGTAAGAAAAAGAAGTCATCAAAGGGTTCGAAGAAGGCAGGTGGTTCATTGAGTAAAGCTATTCCGGAGGAGGATAGTGTTTCTGTATCTGAGTCTGCTAAAGGTGGTGATGATGAGAAAGATGAGGATGATGTTTCTTTTGCATTTACTGGTAAAAAGAAGTCTTCTAAAAAGAAAAGTGGTAGTGCTTCTGCCAAAGTGAGTGATGAAATCGAGTTTGGGAGTGAAAGTGTAAATGTTGTGGAGGCTGAGAAGCCTAGTGTTGACAATGGTAATATAAGTAAGAGTGAAGAGGTCGTTGGAACTTCCAAGAATAAGAAAAAGAATAAGAAGAAGAGTGGGAGGACTAAAGAAGAGGAGGATGATTTAGATAAGCTTCTCGCAGAGCTTGGCGAAGCCCCTGCTACAGCACAACCTGCTGCGGCTCCTCCTCAGCAGGATGATAAAGTTCAGCCGGTTCCTGTAGTAGGTTCTGCCCCTGGTGCTTCAGGAGAAAAGGAGGGAGAAGATGAGACTGTAGAGTCAGCTGCCGCAAAAAAGAAGAAAAAGAAGAAGGAAAAAGAAAAGGAGAAGAAGGCAGCGGCAGCAGCAGCTGGAAGTGCACCGGTAATTGAAGCTGTAGAAGAGAAAGCTGAGGCAATTGAACCGAAGAAAAATGATTCGAAGACCAAAGCGGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAACTACTGGCTAGAAGAAAAGAGGCTGAAGAAAAAAAGAAAAAGGAAGAGGAAGAGAAGCAAAGGAAAGAAGAAGAGGAGCGACGAAGGATAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAAACGTAGAAAGAAGGAAAAAGAAAAGGAGAAACTCCTGAAAAAGAAGCAGGAAGGTAAATTGTTAACTGGTAAGCAGAAAGAAGAAGCCCGGCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACAGGGGGCATGACTCTTCCTGGCGCGGACACTGGTGGACCATCCAAAAAACCTATTTATCAGACAAAGAAAGGGAAAACAACGAATCGAAATCATAATGGTGCCGCTGCTGTCAAGACAGATGAAAGTGTTGAAGCAACGGAAACTACTGCTGATTTAGATTCAGAGGAACCTGAAAAGGTTGAAGAAGTGGAGATGGAGGACAAAGTTGAACTTCCTGAAGTTGTTGAAGAAGTAGTGGATGAAGATGATGATGTTGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTCAATCTGAATGATAGGGGTGCATTTGCTGATGAAGAAGTTGACTCCGAGCCTGAACCAATTGTCAAAAAAGAGATTAAAAATGGCATACCTTCTAAAAATGCTGCAGGTGCTACAAATAAACCTGTTACGAAGCCTGCAGCTGAAGAAACTGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGATAAAAAGAAAAGGCACGATCCACAACTGTCTGCCGTGCCTTCTAAGCCGAGTGAAGGGAACCTTCGGTCGCCAATTTGCTGCATCATGGGTCATGTGGACACTGGCAAAACCAAGCTTCTGGATTGCATTCGAGGTACCAATGTTCAAGAAGGTGAGGCTGGGGGTATCACCCAACAGATTGGTGCAACGTACTTTCCTGCTGAGAACATACGTGAAAGAACCAAGGAACTGAAAGCTGATGCAACACTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGACACGAGTCATTCAATAACTTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTCGTGGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACTGAATTCATTGTTGCATTGAATAAGGTTGACAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGACACAGCAGTCTAAGGATGTTCAGAATGAGTTCAATATGAGGGTCACTCAGATTGTCACTCAGTTCAAGGAACAAGGGCTAAATACAGAATTGTATTACAAAAACAAAGAAATGGGCGAGACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCGGATATGTTATTACTATTAGTTCAGTGGACCCAAAAGACCATGACCGAGAAGCTTACATACAGCGAAGAAGTGCAGTGTACCGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGGGATCAAATAGTTGTATCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCTATGGGAATCAAGATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGAGCTAGTTTATATGTGGTAAAGCCTGATGATGATTTGGAATATATTAAAAAGGCAGCTTTGGAAGACGTGGAGTCGGTCTTGAGCAGGATTGACAGGAGTGGTGAGGGCGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTATTGGAGTTTCTGAAAACTCCAGAAGTGAATATTCCTGTTAGTGCTATAAACATAGGCCCTGTACACAAGAAGGATGTTATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATGCTACTATATTGGCATTTGATGTCAAAGTCACCCCTGAAGCTAGGGATCTTGCAGAAGAATTGGGTGTGAAAATTTTTATAGCGGATATCATTTATCATCTATTTGATCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCGGATGAGGCAGTCTTCCCATGTGTTCTGAAGATCTTACCAAATTGTGTCTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGAACTCCAATTTGTATCCCTTCCCAAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCGGTTGATTATGCGAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAAGAACAGCAGAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATTCTCAAAACTAATTATCGGGATGATCTGACTATGGAGGAATGGAAGCTGGTGGTTAAATTGAAGACTTTGTTCAAGATACAATAA

Protein sequence

>Msa0038440

MGKKKPAIRDDENPPPQQGGGKSKKKAPVIDDDEYSIGVEEVSEDAAPVAVEEKPGKKKGKKGNAKSKKDNDDDDFDDAVVVDDDDVNEIVFAGKKKGKSKKSGGGSSGGSVFASGFGVLGDEDDVDNDDEEKSEVTGEGDDDEDEPVVSFTGKKKSSKGSKKGGSSLFSALDENDDGEEESKNEKVEDDDDEPITFSGKKKKSSKGSKKAGGSLSKAIPEEDSVSVSESAKGGDDEKDEDDVSFAFTGKKKSSKKKSGSASAKVSDEIEFGSESVNVVEAEKPSVDNGNISKSEEVVGTSKNKKKNKKKSGRTKEEEDDLDKLLAELGEAPATAQPAAAPPQQDDKVQPVPVVGSAPGASGEKEGEDETVESAAAKKKKKKKEKEKEKKAAAAAAGSAPVIEAVEEKAEAIEPKKNDSKTKAADKKVPKHVREMQELLARRKEAEEKKKKEEEEKQRKEEEERRRIEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGMTLPGADTGGPSKKPIYQTKKGKTTNRNHNGAAAVKTDESVEATETTADLDSEEPEKVEEVEMEDKVELPEVVEEVVDEDDDVEDEWDAKSWDDVNLNDRGAFADEEVDSEPEPIVKKEIKNGIPSKNAAGATNKPVTKPAAEETEDRKQAKVVVEDKKKRHDPQLSAVPSKPSEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIRKAMTQQSKDVQNEFNMRVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSAINIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARDLAEELGVKIFIADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLTMEEWKLVVKLKTLFKIQ*