Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138720 | XP_003621484.1 | 93.411 | 258 | 17 | 0 | 1 | 258 | 1 | 258 | 3.27e-176 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138720 | sp|O22309|7OMT9_MEDSA | 79.845 | 258 | 47 | 1 | 1 | 258 | 1 | 253 | 1.58e-153 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138720 | Q06YR3 | 93.411 | 258 | 17 | 0 | 1 | 258 | 1 | 258 | 1.56e-176 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0807370 | Msa1138720 | 0.805599 | 1.235077e-49 | -8.615850e-47 |
| Msa1100930 | Msa1138720 | 0.815033 | 1.137458e-51 | -8.615850e-47 |
| Msa0343850 | Msa1138720 | 0.806706 | 7.221972e-50 | -8.615850e-47 |
| Msa0545700 | Msa1138720 | 0.813379 | 2.637707e-51 | -8.615850e-47 |
| Msa0927380 | Msa1138720 | 0.815524 | 8.846032e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138720 | MtrunA17_Chr7g0219141 | 93.411 | 258 | 17 | 0 | 1 | 258 | 1 | 258 | 3.01e-180 | 501 |
| Msa1138720 | MtrunA17_Chr7g0219161 | 89.535 | 258 | 27 | 0 | 1 | 258 | 1 | 258 | 5.95e-173 | 483 |
| Msa1138720 | MtrunA17_Chr1g0188391 | 56.489 | 262 | 110 | 3 | 1 | 258 | 1 | 262 | 1.45e-100 | 299 |
| Msa1138720 | MtrunA17_Chr7g0223241 | 50.980 | 255 | 118 | 2 | 4 | 258 | 3 | 250 | 5.00e-90 | 272 |
| Msa1138720 | MtrunA17_Chr7g0223231 | 51.765 | 255 | 116 | 2 | 4 | 258 | 3 | 250 | 5.64e-90 | 272 |
| Msa1138720 | MtrunA17_Chr1g0188371 | 53.257 | 261 | 118 | 3 | 1 | 258 | 1 | 260 | 3.68e-89 | 271 |
| Msa1138720 | MtrunA17_Chr4g0014561 | 51.331 | 263 | 123 | 3 | 1 | 258 | 1 | 263 | 8.48e-86 | 262 |
| Msa1138720 | MtrunA17_Chr4g0014681 | 51.331 | 263 | 123 | 3 | 1 | 258 | 1 | 263 | 9.56e-86 | 261 |
| Msa1138720 | MtrunA17_Chr4g0046531 | 51.737 | 259 | 121 | 2 | 1 | 258 | 1 | 256 | 3.22e-84 | 268 |
| Msa1138720 | MtrunA17_Chr4g0046531 | 49.807 | 259 | 126 | 2 | 1 | 258 | 363 | 618 | 7.89e-82 | 261 |
| Msa1138720 | MtrunA17_Chr4g0014601 | 48.438 | 256 | 125 | 3 | 6 | 258 | 6 | 257 | 2.96e-81 | 247 |
| Msa1138720 | MtrunA17_Chr4g0014591 | 48.438 | 256 | 125 | 3 | 6 | 258 | 6 | 257 | 8.19e-80 | 246 |
| Msa1138720 | MtrunA17_Chr4g0014661 | 48.438 | 256 | 125 | 3 | 6 | 258 | 6 | 257 | 1.25e-79 | 246 |
| Msa1138720 | MtrunA17_Chr4g0014641 | 48.485 | 264 | 129 | 4 | 1 | 258 | 1 | 263 | 6.56e-79 | 244 |
| Msa1138720 | MtrunA17_Chr4g0046361 | 47.893 | 261 | 133 | 2 | 1 | 258 | 1 | 261 | 2.55e-78 | 243 |
| Msa1138720 | MtrunA17_Chr4g0046341 | 49.242 | 264 | 128 | 3 | 1 | 258 | 1 | 264 | 8.62e-72 | 226 |
| Msa1138720 | MtrunA17_Chr5g0432251 | 42.629 | 251 | 138 | 3 | 11 | 258 | 11 | 258 | 8.43e-69 | 218 |
| Msa1138720 | MtrunA17_Chr5g0432241 | 43.825 | 251 | 135 | 3 | 11 | 258 | 12 | 259 | 1.17e-67 | 215 |
| Msa1138720 | MtrunA17_Chr5g0432301 | 42.629 | 251 | 138 | 4 | 11 | 258 | 12 | 259 | 1.60e-67 | 215 |
| Msa1138720 | MtrunA17_Chr4g0040621 | 42.000 | 250 | 139 | 3 | 11 | 258 | 24 | 269 | 5.60e-67 | 214 |
| Msa1138720 | MtrunA17_Chr7g0219171 | 80.165 | 121 | 19 | 1 | 1 | 121 | 1 | 116 | 4.41e-64 | 202 |
| Msa1138720 | MtrunA17_Chr5g0432211 | 37.308 | 260 | 145 | 4 | 1 | 258 | 1 | 244 | 5.05e-57 | 187 |
| Msa1138720 | MtrunA17_Chr5g0432261 | 38.400 | 250 | 123 | 3 | 11 | 258 | 7 | 227 | 3.60e-52 | 174 |
| Msa1138720 | MtrunA17_Chr3g0121301 | 32.500 | 240 | 156 | 3 | 20 | 258 | 27 | 261 | 4.28e-37 | 135 |
| Msa1138720 | MtrunA17_Chr4g0022021 | 31.522 | 276 | 165 | 6 | 1 | 258 | 1 | 270 | 2.37e-36 | 134 |
| Msa1138720 | MtrunA17_Chr4g0021981 | 32.046 | 259 | 163 | 5 | 7 | 258 | 18 | 270 | 9.62e-34 | 127 |
| Msa1138720 | MtrunA17_Chr3g0128011 | 30.472 | 233 | 156 | 4 | 31 | 258 | 88 | 319 | 1.05e-27 | 111 |
| Msa1138720 | MtrunA17_Chr7g0218261 | 28.571 | 231 | 160 | 3 | 33 | 258 | 40 | 270 | 4.56e-26 | 106 |
| Msa1138720 | MtrunA17_Chr7g0218131 | 29.310 | 232 | 158 | 4 | 33 | 258 | 41 | 272 | 1.46e-25 | 104 |
| Msa1138720 | MtrunA17_Chr5g0448091 | 32.636 | 239 | 144 | 6 | 31 | 258 | 33 | 265 | 3.14e-25 | 103 |
| Msa1138720 | MtrunA17_Chr1g0200491 | 29.502 | 261 | 165 | 4 | 33 | 285 | 41 | 290 | 1.05e-24 | 102 |
| Msa1138720 | MtrunA17_Chr7g0218181 | 36.090 | 133 | 85 | 0 | 126 | 258 | 137 | 269 | 1.81e-23 | 99.0 |
| Msa1138720 | MtrunA17_Chr7g0218271 | 27.848 | 237 | 160 | 4 | 33 | 258 | 41 | 277 | 2.70e-23 | 98.6 |
| Msa1138720 | MtrunA17_Chr7g0218301 | 27.426 | 237 | 161 | 4 | 33 | 258 | 41 | 277 | 4.70e-23 | 97.8 |
| Msa1138720 | MtrunA17_Chr7g0218211 | 26.293 | 232 | 165 | 2 | 33 | 258 | 40 | 271 | 2.91e-22 | 95.5 |
| Msa1138720 | MtrunA17_Chr8g0367441 | 26.695 | 236 | 163 | 5 | 31 | 258 | 46 | 279 | 5.37e-22 | 95.1 |
| Msa1138720 | MtrunA17_Chr7g0276401 | 28.017 | 232 | 162 | 3 | 31 | 258 | 47 | 277 | 1.25e-21 | 94.0 |
| Msa1138720 | MtrunA17_Chr2g0314271 | 29.614 | 233 | 155 | 4 | 31 | 258 | 27 | 255 | 6.85e-21 | 91.7 |
| Msa1138720 | MtrunA17_Chr7g0276411 | 26.271 | 236 | 166 | 3 | 30 | 258 | 30 | 264 | 1.13e-20 | 91.3 |
| Msa1138720 | MtrunA17_Chr8g0367501 | 24.793 | 242 | 174 | 3 | 24 | 258 | 25 | 265 | 2.87e-20 | 90.5 |
| Msa1138720 | MtrunA17_Chr8g0345851 | 33.533 | 167 | 103 | 4 | 96 | 258 | 30 | 192 | 4.47e-20 | 88.2 |
| Msa1138720 | MtrunA17_Chr8g0367451 | 25.532 | 235 | 167 | 3 | 31 | 258 | 45 | 278 | 1.20e-19 | 88.2 |
| Msa1138720 | MtrunA17_Chr2g0307521 | 30.573 | 157 | 92 | 3 | 128 | 281 | 135 | 277 | 2.20e-19 | 87.4 |
| Msa1138720 | MtrunA17_Chr1g0163611 | 27.899 | 276 | 146 | 6 | 33 | 283 | 38 | 285 | 2.50e-19 | 87.4 |
| Msa1138720 | MtrunA17_Chr1g0163601 | 28.077 | 260 | 166 | 6 | 33 | 283 | 38 | 285 | 8.72e-19 | 85.9 |
| Msa1138720 | MtrunA17_Chr8g0367491 | 24.255 | 235 | 170 | 4 | 31 | 258 | 45 | 278 | 1.48e-18 | 85.1 |
| Msa1138720 | MtrunA17_Chr8g0367401 | 37.273 | 110 | 67 | 2 | 152 | 260 | 4 | 112 | 1.67e-18 | 80.5 |
| Msa1138720 | MtrunA17_Chr3g0085201 | 27.660 | 235 | 157 | 6 | 33 | 258 | 30 | 260 | 2.83e-17 | 81.3 |
| Msa1138720 | MtrunA17_Chr1g0163621 | 27.755 | 245 | 125 | 6 | 62 | 283 | 84 | 299 | 3.75e-17 | 81.3 |
| Msa1138720 | MtrunA17_Chr3g0085211 | 28.390 | 236 | 154 | 6 | 33 | 258 | 43 | 273 | 1.82e-16 | 79.0 |
| Msa1138720 | MtrunA17_Chr8g0367381 | 35.398 | 113 | 71 | 2 | 147 | 258 | 149 | 260 | 2.05e-15 | 75.5 |
| Msa1138720 | MtrunA17_Chr8g0367421 | 35.455 | 110 | 52 | 3 | 152 | 260 | 4 | 95 | 8.86e-14 | 67.0 |
| Msa1138720 | MtrunA17_Chr3g0130061 | 29.200 | 250 | 133 | 12 | 32 | 258 | 31 | 259 | 3.20e-13 | 69.3 |
| Msa1138720 | MtrunA17_Chr1g0170941 | 42.424 | 66 | 38 | 0 | 191 | 256 | 11 | 76 | 2.37e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138720 | AT5G54160.1 | 30.620 | 258 | 165 | 8 | 10 | 258 | 11 | 263 | 4.14e-30 | 117 |
| Msa1138720 | AT4G35150.1 | 29.435 | 248 | 128 | 7 | 15 | 258 | 14 | 218 | 2.54e-25 | 103 |
| Msa1138720 | AT4G35160.1 | 31.818 | 264 | 163 | 8 | 6 | 258 | 18 | 275 | 1.77e-23 | 99.8 |
| Msa1138720 | AT3G53140.1 | 29.114 | 237 | 156 | 5 | 31 | 258 | 27 | 260 | 9.65e-20 | 89.0 |
| Msa1138720 | AT1G33030.3 | 28.692 | 237 | 159 | 7 | 31 | 260 | 21 | 254 | 9.00e-18 | 82.0 |
| Msa1138720 | AT1G77520.1 | 35.659 | 129 | 78 | 1 | 135 | 258 | 154 | 282 | 9.38e-18 | 83.2 |
| Msa1138720 | AT1G33030.2 | 28.511 | 235 | 158 | 7 | 31 | 258 | 21 | 252 | 1.07e-17 | 81.6 |
| Msa1138720 | AT1G33030.1 | 28.511 | 235 | 158 | 7 | 31 | 258 | 21 | 252 | 4.82e-17 | 80.9 |
| Msa1138720 | AT1G51990.2 | 23.834 | 193 | 139 | 3 | 71 | 258 | 74 | 263 | 6.54e-15 | 75.1 |
| Msa1138720 | AT1G51990.1 | 26.961 | 204 | 119 | 7 | 71 | 258 | 74 | 263 | 9.19e-15 | 74.3 |
| Msa1138720 | AT5G53810.1 | 28.980 | 245 | 152 | 8 | 31 | 258 | 40 | 279 | 2.42e-12 | 67.4 |
| Msa1138720 | AT1G63140.1 | 30.534 | 131 | 86 | 1 | 135 | 260 | 174 | 304 | 6.63e-11 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTTAGGTTATGATTTA+TGG | 0.105649 | 7_4:-8433504 | Msa1138720:CDS |
| ACTCTATTTGCTGTCAATTT+AGG | 0.138679 | 7_4:-8433517 | Msa1138720:CDS |
| CCATTATTGTGGATAATATT+TGG | 0.147159 | 7_4:+8433826 | None:intergenic |
| CAATGCCAAATTAATCATTT+TGG | 0.154805 | 7_4:+8433420 | None:intergenic |
| GCTTCAGAGCTTCTTGTTAA+AGG | 0.174797 | 7_4:-8433640 | Msa1138720:CDS |
| TGAATCCAAAATGATTAATT+TGG | 0.178795 | 7_4:-8433425 | Msa1138720:CDS |
| ACTAAGTTTGAAAGAGTAAT+TGG | 0.200330 | 7_4:+8433799 | None:intergenic |
| TTAGAGGTCTGCTGGACTTT+TGG | 0.213263 | 7_4:-8432254 | Msa1138720:intron |
| AAGTCAAGGCCAAGGTATTC+AGG | 0.262955 | 7_4:+8432170 | None:intergenic |
| TTGAACAATCTATTATATTC+AGG | 0.315369 | 7_4:+8433463 | None:intergenic |
| CAATTTAGGTTATGATTTAT+GGG | 0.326232 | 7_4:-8433503 | Msa1138720:CDS |
| AGCAAAACAGCATCAGCTTT+AGG | 0.327775 | 7_4:+8433202 | None:intergenic |
| CCAAATATTATCCACAATAA+TGG | 0.343354 | 7_4:-8433826 | Msa1138720:CDS |
| CATAAATTCTCTACAACCTT+TGG | 0.344220 | 7_4:+8433274 | None:intergenic |
| AACACAACACATTTCAAGTT+AGG | 0.376071 | 7_4:+8433304 | None:intergenic |
| TTGACTTTGTTCGATATAGA+AGG | 0.380269 | 7_4:-8432154 | Msa1138720:CDS |
| GTTAAAGAAATGGGTTTATG+AGG | 0.399104 | 7_4:-8433548 | Msa1138720:CDS |
| TGAAATTTGTTTAGCTCCAA+TGG | 0.404978 | 7_4:-8433614 | Msa1138720:CDS |
| GTTGATGTTGGCGGTGGAAA+TGG | 0.418984 | 7_4:-8433358 | Msa1138720:CDS |
| ATTTCATAAGTTAAAGAAAT+GGG | 0.421608 | 7_4:-8433557 | Msa1138720:CDS |
| ACGTTATCGACTTTGGTTGA+TGG | 0.424903 | 7_4:+8433760 | None:intergenic |
| TAGATTCTATGTCTCTGAAA+TGG | 0.439367 | 7_4:-8433867 | Msa1138720:CDS |
| CATTTCATAAGTTAAAGAAA+TGG | 0.443086 | 7_4:-8433558 | Msa1138720:CDS |
| TACTAGATTTAGAGGTCTGC+TGG | 0.447176 | 7_4:-8432262 | Msa1138720:intron |
| TTGGAATCAATTGTTGATGT+TGG | 0.447276 | 7_4:-8433370 | Msa1138720:CDS |
| ACGCACTCCTCGAGAGTCTC+AGG | 0.449086 | 7_4:+8432205 | None:intergenic |
| CATTTCTTATCACTTGTTAG+CGG | 0.471534 | 7_4:-8432119 | Msa1138720:CDS |
| CCCCACCAACATAAGTCAAA+TGG | 0.486807 | 7_4:+8433242 | None:intergenic |
| TGAAATGAAGCTAAAAGTGT+TGG | 0.494184 | 7_4:+8433574 | None:intergenic |
| ACGCTGCACGTTATCGACTT+TGG | 0.496595 | 7_4:+8433753 | None:intergenic |
| CTCGAGAGTCTCAGGCTCAC+AGG | 0.497399 | 7_4:+8432213 | None:intergenic |
| CAAAGAATCCATTGTGTGCA+AGG | 0.499117 | 7_4:+8433719 | None:intergenic |
| AGTCAAGGCCAAGGTATTCA+GGG | 0.505288 | 7_4:+8432171 | None:intergenic |
| GGCGGTGGAAATGGAACAAC+TGG | 0.511740 | 7_4:-8433349 | Msa1138720:CDS |
| AAGGTTGTAGAGAATTTATG+TGG | 0.511990 | 7_4:-8433271 | Msa1138720:CDS |
| CCATTTGACTTATGTTGGTG+GGG | 0.514873 | 7_4:-8433242 | Msa1138720:CDS |
| ACCATTTGACTTATGTTGGT+GGG | 0.522853 | 7_4:-8433243 | Msa1138720:CDS |
| TAATTGGTTTGCCATTATTG+TGG | 0.529109 | 7_4:+8433815 | None:intergenic |
| GAATCAATTGTTGATGTTGG+CGG | 0.538331 | 7_4:-8433367 | Msa1138720:CDS |
| AGTAACCATTTGACTTATGT+TGG | 0.538517 | 7_4:-8433247 | Msa1138720:CDS |
| TCAAGAACACACTCAACCAT+TGG | 0.540381 | 7_4:+8433598 | None:intergenic |
| TTTGGGTTCTGAGCTTATGA+CGG | 0.540594 | 7_4:-8432236 | Msa1138720:CDS |
| CAGAGACATAGAATCTATGA+AGG | 0.547617 | 7_4:+8433873 | None:intergenic |
| TCAATTGTTGATGTTGGCGG+TGG | 0.549085 | 7_4:-8433364 | Msa1138720:CDS |
| TAGATTGTTCAATGATGCAA+TGG | 0.569948 | 7_4:-8433452 | Msa1138720:CDS |
| CTTTGTTCGATATAGAAGGT+AGG | 0.575501 | 7_4:-8432150 | Msa1138720:CDS |
| AACCATTTGACTTATGTTGG+TGG | 0.576467 | 7_4:-8433244 | Msa1138720:CDS |
| ATCGAACAAAGTCAAGGCCA+AGG | 0.588392 | 7_4:+8432162 | None:intergenic |
| ATGCGTTACCTTGCACACAA+TGG | 0.609100 | 7_4:-8433727 | Msa1138720:CDS |
| AAGGCCAAGGTATTCAGGGA+AGG | 0.624781 | 7_4:+8432175 | None:intergenic |
| TGTTGTGTTTGATCGTCCAA+AGG | 0.630603 | 7_4:-8433290 | Msa1138720:CDS |
| TTCTATATCGAACAAAGTCA+AGG | 0.631712 | 7_4:+8432156 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTAAAATTCTATTTT+TGG | - | chr7_4:8432918-8432937 | Msa1138720:intron | 10.0% |
| !!! | TGTTTTAAAATTCTATTTTT+GGG | - | chr7_4:8432919-8432938 | Msa1138720:intron | 10.0% |
| !!! | TTGTTTTAAAATTCTATTTT+TGG | - | chr7_4:8432918-8432937 | Msa1138720:intron | 10.0% |
| !!! | TGTTTTAAAATTCTATTTTT+GGG | - | chr7_4:8432919-8432938 | Msa1138720:intron | 10.0% |
| !! | ATTTCATAAGTTAAAGAAAT+GGG | - | chr7_4:8432497-8432516 | Msa1138720:intron | 15.0% |
| !!! | GTTTTAAAATTCTATTTTTG+GGG | - | chr7_4:8432920-8432939 | Msa1138720:intron | 15.0% |
| !!! | GTTTTTTAAAATTATGCTTT+TGG | + | chr7_4:8433052-8433071 | None:intergenic | 15.0% |
| !!! | AAAACATAGTCTTAAAAATT+GGG | + | chr7_4:8433251-8433270 | None:intergenic | 15.0% |
| !! | ATTTCATAAGTTAAAGAAAT+GGG | - | chr7_4:8432497-8432516 | Msa1138720:intron | 15.0% |
| !!! | GTTTTAAAATTCTATTTTTG+GGG | - | chr7_4:8432920-8432939 | Msa1138720:intron | 15.0% |
| !!! | GTTTTTTAAAATTATGCTTT+TGG | + | chr7_4:8433052-8433071 | None:intergenic | 15.0% |
| !!! | AAAACATAGTCTTAAAAATT+GGG | + | chr7_4:8433251-8433270 | None:intergenic | 15.0% |
| !! | CATTTCATAAGTTAAAGAAA+TGG | - | chr7_4:8432496-8432515 | Msa1138720:intron | 20.0% |
| !!! | TCAATTTAGGTTATGATTTA+TGG | - | chr7_4:8432550-8432569 | Msa1138720:intron | 20.0% |
| !!! | CAATTTAGGTTATGATTTAT+GGG | - | chr7_4:8432551-8432570 | Msa1138720:intron | 20.0% |
| !! | TTGAACAATCTATTATATTC+AGG | + | chr7_4:8432594-8432613 | None:intergenic | 20.0% |
| !! | TGAATCCAAAATGATTAATT+TGG | - | chr7_4:8432629-8432648 | Msa1138720:intron | 20.0% |
| !! | TTAGGATTGAAAATTCTAAA+GGG | + | chr7_4:8432946-8432965 | None:intergenic | 20.0% |
| !!! | TTTAGGATTGAAAATTCTAA+AGG | + | chr7_4:8432947-8432966 | None:intergenic | 20.0% |
| !!! | TTTTGCTATACAACAATTTT+AGG | + | chr7_4:8432964-8432983 | None:intergenic | 20.0% |
| !!! | GAAAACATAGTCTTAAAAAT+TGG | + | chr7_4:8433252-8433271 | None:intergenic | 20.0% |
| !! | CATTTCATAAGTTAAAGAAA+TGG | - | chr7_4:8432496-8432515 | Msa1138720:intron | 20.0% |
| !!! | TCAATTTAGGTTATGATTTA+TGG | - | chr7_4:8432550-8432569 | Msa1138720:intron | 20.0% |
| !!! | CAATTTAGGTTATGATTTAT+GGG | - | chr7_4:8432551-8432570 | Msa1138720:intron | 20.0% |
| !! | TTGAACAATCTATTATATTC+AGG | + | chr7_4:8432594-8432613 | None:intergenic | 20.0% |
| !! | TGAATCCAAAATGATTAATT+TGG | - | chr7_4:8432629-8432648 | Msa1138720:intron | 20.0% |
| !! | TTAGGATTGAAAATTCTAAA+GGG | + | chr7_4:8432946-8432965 | None:intergenic | 20.0% |
| !!! | TTTAGGATTGAAAATTCTAA+AGG | + | chr7_4:8432947-8432966 | None:intergenic | 20.0% |
| !!! | TTTTGCTATACAACAATTTT+AGG | + | chr7_4:8432964-8432983 | None:intergenic | 20.0% |
| !!! | GAAAACATAGTCTTAAAAAT+TGG | + | chr7_4:8433252-8433271 | None:intergenic | 20.0% |
| !! | TAAAAATTTCACTTGGTTTG+CGG | + | chr7_4:8432128-8432147 | None:intergenic | 25.0% |
| !!! | TGTGCTTTAAAAATTTCACT+TGG | + | chr7_4:8432135-8432154 | None:intergenic | 25.0% |
| ! | CCATTATTGTGGATAATATT+TGG | + | chr7_4:8432231-8432250 | None:intergenic | 25.0% |
| ! | CCAAATATTATCCACAATAA+TGG | - | chr7_4:8432228-8432247 | Msa1138720:CDS | 25.0% |
| ! | ACTAAGTTTGAAAGAGTAAT+TGG | + | chr7_4:8432258-8432277 | None:intergenic | 25.0% |
| !! | CAATGCCAAATTAATCATTT+TGG | + | chr7_4:8432637-8432656 | None:intergenic | 25.0% |
| !! | AGCTAGTGCTATTATTTAAA+GGG | + | chr7_4:8433085-8433104 | None:intergenic | 25.0% |
| !! | AAGCTAGTGCTATTATTTAA+AGG | + | chr7_4:8433086-8433105 | None:intergenic | 25.0% |
| !! | TTTTAACCTACTAGATTTAG+AGG | - | chr7_4:8433784-8433803 | Msa1138720:CDS | 25.0% |
| !! | TAAAAATTTCACTTGGTTTG+CGG | + | chr7_4:8432128-8432147 | None:intergenic | 25.0% |
| !!! | TGTGCTTTAAAAATTTCACT+TGG | + | chr7_4:8432135-8432154 | None:intergenic | 25.0% |
| ! | CCATTATTGTGGATAATATT+TGG | + | chr7_4:8432231-8432250 | None:intergenic | 25.0% |
| ! | CCAAATATTATCCACAATAA+TGG | - | chr7_4:8432228-8432247 | Msa1138720:CDS | 25.0% |
| ! | ACTAAGTTTGAAAGAGTAAT+TGG | + | chr7_4:8432258-8432277 | None:intergenic | 25.0% |
| !! | CAATGCCAAATTAATCATTT+TGG | + | chr7_4:8432637-8432656 | None:intergenic | 25.0% |
| !! | AGCTAGTGCTATTATTTAAA+GGG | + | chr7_4:8433085-8433104 | None:intergenic | 25.0% |
| !! | AAGCTAGTGCTATTATTTAA+AGG | + | chr7_4:8433086-8433105 | None:intergenic | 25.0% |
| !! | TTTTAACCTACTAGATTTAG+AGG | - | chr7_4:8433784-8433803 | Msa1138720:CDS | 25.0% |
| ! | TAGATTCTATGTCTCTGAAA+TGG | - | chr7_4:8432187-8432206 | Msa1138720:CDS | 30.0% |
| !! | TAATTGGTTTGCCATTATTG+TGG | + | chr7_4:8432242-8432261 | None:intergenic | 30.0% |
| ! | TGAAATTTGTTTAGCTCCAA+TGG | - | chr7_4:8432440-8432459 | Msa1138720:intron | 30.0% |
| ! | TGAAATGAAGCTAAAAGTGT+TGG | + | chr7_4:8432483-8432502 | None:intergenic | 30.0% |
| ! | GTTAAAGAAATGGGTTTATG+AGG | - | chr7_4:8432506-8432525 | Msa1138720:intron | 30.0% |
| !! | ACTCTATTTGCTGTCAATTT+AGG | - | chr7_4:8432537-8432556 | Msa1138720:intron | 30.0% |
| TAGATTGTTCAATGATGCAA+TGG | - | chr7_4:8432602-8432621 | Msa1138720:intron | 30.0% | |
| ! | AGATTGCAATTTTGTGTTTG+AGG | - | chr7_4:8432659-8432678 | Msa1138720:intron | 30.0% |
| ! | GATTGCAATTTTGTGTTTGA+GGG | - | chr7_4:8432660-8432679 | Msa1138720:intron | 30.0% |
| ! | ATTGCAATTTTGTGTTTGAG+GGG | - | chr7_4:8432661-8432680 | Msa1138720:intron | 30.0% |
| TTGGAATCAATTGTTGATGT+TGG | - | chr7_4:8432684-8432703 | Msa1138720:intron | 30.0% | |
| !! | AACACAACACATTTCAAGTT+AGG | + | chr7_4:8432753-8432772 | None:intergenic | 30.0% |
| CATAAATTCTCTACAACCTT+TGG | + | chr7_4:8432783-8432802 | None:intergenic | 30.0% | |
| AAGGTTGTAGAGAATTTATG+TGG | - | chr7_4:8432783-8432802 | Msa1138720:intron | 30.0% | |
| ! | AGTAACCATTTGACTTATGT+TGG | - | chr7_4:8432807-8432826 | Msa1138720:intron | 30.0% |
| TGTATAGCAAAATCATCATC+AGG | - | chr7_4:8432972-8432991 | Msa1138720:intron | 30.0% | |
| ATCAAATTCACATATACCGA+TGG | + | chr7_4:8433127-8433146 | None:intergenic | 30.0% | |
| TCGGTATATGTGAATTTGAT+CGG | - | chr7_4:8433127-8433146 | Msa1138720:intron | 30.0% | |
| TGACAATTCAATTGCATGAA+CGG | - | chr7_4:8433162-8433181 | Msa1138720:intron | 30.0% | |
| AACTAGAAGGTGAGAAATAT+TGG | - | chr7_4:8433380-8433399 | Msa1138720:CDS | 30.0% | |
| TTCTATATCGAACAAAGTCA+AGG | + | chr7_4:8433901-8433920 | None:intergenic | 30.0% | |
| TTGACTTTGTTCGATATAGA+AGG | - | chr7_4:8433900-8433919 | Msa1138720:CDS | 30.0% | |
| ! | CATTTCTTATCACTTGTTAG+CGG | - | chr7_4:8433935-8433954 | Msa1138720:CDS | 30.0% |
| ! | TAGATTCTATGTCTCTGAAA+TGG | - | chr7_4:8432187-8432206 | Msa1138720:CDS | 30.0% |
| !! | TAATTGGTTTGCCATTATTG+TGG | + | chr7_4:8432242-8432261 | None:intergenic | 30.0% |
| ! | TGAAATTTGTTTAGCTCCAA+TGG | - | chr7_4:8432440-8432459 | Msa1138720:intron | 30.0% |
| ! | TGAAATGAAGCTAAAAGTGT+TGG | + | chr7_4:8432483-8432502 | None:intergenic | 30.0% |
| ! | GTTAAAGAAATGGGTTTATG+AGG | - | chr7_4:8432506-8432525 | Msa1138720:intron | 30.0% |
| !! | ACTCTATTTGCTGTCAATTT+AGG | - | chr7_4:8432537-8432556 | Msa1138720:intron | 30.0% |
| TAGATTGTTCAATGATGCAA+TGG | - | chr7_4:8432602-8432621 | Msa1138720:intron | 30.0% | |
| ! | AGATTGCAATTTTGTGTTTG+AGG | - | chr7_4:8432659-8432678 | Msa1138720:intron | 30.0% |
| ! | GATTGCAATTTTGTGTTTGA+GGG | - | chr7_4:8432660-8432679 | Msa1138720:intron | 30.0% |
| ! | ATTGCAATTTTGTGTTTGAG+GGG | - | chr7_4:8432661-8432680 | Msa1138720:intron | 30.0% |
| TTGGAATCAATTGTTGATGT+TGG | - | chr7_4:8432684-8432703 | Msa1138720:intron | 30.0% | |
| !! | AACACAACACATTTCAAGTT+AGG | + | chr7_4:8432753-8432772 | None:intergenic | 30.0% |
| CATAAATTCTCTACAACCTT+TGG | + | chr7_4:8432783-8432802 | None:intergenic | 30.0% | |
| AAGGTTGTAGAGAATTTATG+TGG | - | chr7_4:8432783-8432802 | Msa1138720:intron | 30.0% | |
| ! | AGTAACCATTTGACTTATGT+TGG | - | chr7_4:8432807-8432826 | Msa1138720:intron | 30.0% |
| TGTATAGCAAAATCATCATC+AGG | - | chr7_4:8432972-8432991 | Msa1138720:intron | 30.0% | |
| ATCAAATTCACATATACCGA+TGG | + | chr7_4:8433127-8433146 | None:intergenic | 30.0% | |
| TCGGTATATGTGAATTTGAT+CGG | - | chr7_4:8433127-8433146 | Msa1138720:intron | 30.0% | |
| TGACAATTCAATTGCATGAA+CGG | - | chr7_4:8433162-8433181 | Msa1138720:intron | 30.0% | |
| AACTAGAAGGTGAGAAATAT+TGG | - | chr7_4:8433380-8433399 | Msa1138720:CDS | 30.0% | |
| TTCTATATCGAACAAAGTCA+AGG | + | chr7_4:8433901-8433920 | None:intergenic | 30.0% | |
| TTGACTTTGTTCGATATAGA+AGG | - | chr7_4:8433900-8433919 | Msa1138720:CDS | 30.0% | |
| ! | CATTTCTTATCACTTGTTAG+CGG | - | chr7_4:8433935-8433954 | Msa1138720:CDS | 30.0% |
| CAGAGACATAGAATCTATGA+AGG | + | chr7_4:8432184-8432203 | None:intergenic | 35.0% | |
| GAATCAATTGTTGATGTTGG+CGG | - | chr7_4:8432687-8432706 | Msa1138720:intron | 35.0% | |
| ! | AACCATTTGACTTATGTTGG+TGG | - | chr7_4:8432810-8432829 | Msa1138720:intron | 35.0% |
| ! | ACCATTTGACTTATGTTGGT+GGG | - | chr7_4:8432811-8432830 | Msa1138720:intron | 35.0% |
| TGATTGCAAAAACATGAGCA+AGG | - | chr7_4:8433025-8433044 | Msa1138720:intron | 35.0% | |
| TTATTTAAAGGGACATGCTC+AGG | + | chr7_4:8433074-8433093 | None:intergenic | 35.0% | |
| !!! | CTAGCTTGTTTTCATTGAAC+CGG | - | chr7_4:8433099-8433118 | Msa1138720:intron | 35.0% |
| TCTTAAAAATTGGGTCGAAC+TGG | + | chr7_4:8433242-8433261 | None:intergenic | 35.0% | |
| ATACGAGTCAAATCTTGCAA+AGG | - | chr7_4:8433317-8433336 | Msa1138720:CDS | 35.0% | |
| !! | TATTTCTCACCTTCTAGTTC+AGG | + | chr7_4:8433379-8433398 | None:intergenic | 35.0% |
| ! | ACAGTTTTCCCAAAAGCTAT+AGG | - | chr7_4:8433515-8433534 | Msa1138720:CDS | 35.0% |
| ! | ACCATCAACCTATAGCTTTT+GGG | + | chr7_4:8433526-8433545 | None:intergenic | 35.0% |
| ATAGCTTAATAGAAGTCTCC+TGG | - | chr7_4:8433554-8433573 | Msa1138720:CDS | 35.0% | |
| TAGCTTAATAGAAGTCTCCT+GGG | - | chr7_4:8433555-8433574 | Msa1138720:CDS | 35.0% | |
| AAGTATGAAGCCACTAAATC+TGG | + | chr7_4:8433609-8433628 | None:intergenic | 35.0% | |
| CTTTGTTCGATATAGAAGGT+AGG | - | chr7_4:8433904-8433923 | Msa1138720:CDS | 35.0% | |
| CAGAGACATAGAATCTATGA+AGG | + | chr7_4:8432184-8432203 | None:intergenic | 35.0% | |
| GAATCAATTGTTGATGTTGG+CGG | - | chr7_4:8432687-8432706 | Msa1138720:intron | 35.0% | |
| ! | AACCATTTGACTTATGTTGG+TGG | - | chr7_4:8432810-8432829 | Msa1138720:intron | 35.0% |
| ! | ACCATTTGACTTATGTTGGT+GGG | - | chr7_4:8432811-8432830 | Msa1138720:intron | 35.0% |
| TGATTGCAAAAACATGAGCA+AGG | - | chr7_4:8433025-8433044 | Msa1138720:intron | 35.0% | |
| TTATTTAAAGGGACATGCTC+AGG | + | chr7_4:8433074-8433093 | None:intergenic | 35.0% | |
| !!! | CTAGCTTGTTTTCATTGAAC+CGG | - | chr7_4:8433099-8433118 | Msa1138720:intron | 35.0% |
| TCTTAAAAATTGGGTCGAAC+TGG | + | chr7_4:8433242-8433261 | None:intergenic | 35.0% | |
| ATACGAGTCAAATCTTGCAA+AGG | - | chr7_4:8433317-8433336 | Msa1138720:CDS | 35.0% | |
| !! | TATTTCTCACCTTCTAGTTC+AGG | + | chr7_4:8433379-8433398 | None:intergenic | 35.0% |
| ! | ACAGTTTTCCCAAAAGCTAT+AGG | - | chr7_4:8433515-8433534 | Msa1138720:CDS | 35.0% |
| ! | ACCATCAACCTATAGCTTTT+GGG | + | chr7_4:8433526-8433545 | None:intergenic | 35.0% |
| ATAGCTTAATAGAAGTCTCC+TGG | - | chr7_4:8433554-8433573 | Msa1138720:CDS | 35.0% | |
| TAGCTTAATAGAAGTCTCCT+GGG | - | chr7_4:8433555-8433574 | Msa1138720:CDS | 35.0% | |
| AAGTATGAAGCCACTAAATC+TGG | + | chr7_4:8433609-8433628 | None:intergenic | 35.0% | |
| CTTTGTTCGATATAGAAGGT+AGG | - | chr7_4:8433904-8433923 | Msa1138720:CDS | 35.0% | |
| !! | ACGTTATCGACTTTGGTTGA+TGG | + | chr7_4:8432297-8432316 | None:intergenic | 40.0% |
| CAAAGAATCCATTGTGTGCA+AGG | + | chr7_4:8432338-8432357 | None:intergenic | 40.0% | |
| GCTTCAGAGCTTCTTGTTAA+AGG | - | chr7_4:8432414-8432433 | Msa1138720:intron | 40.0% | |
| TCAAGAACACACTCAACCAT+TGG | + | chr7_4:8432459-8432478 | None:intergenic | 40.0% | |
| ! | CAATTTTGTGTTTGAGGGGT+TGG | - | chr7_4:8432665-8432684 | Msa1138720:intron | 40.0% |
| TGTTGTGTTTGATCGTCCAA+AGG | - | chr7_4:8432764-8432783 | Msa1138720:intron | 40.0% | |
| ! | CCATTTGACTTATGTTGGTG+GGG | - | chr7_4:8432812-8432831 | Msa1138720:intron | 40.0% |
| AGCAAAACAGCATCAGCTTT+AGG | + | chr7_4:8432855-8432874 | None:intergenic | 40.0% | |
| !!! | AGCTGATGCTGTTTTGCTTA+AGG | - | chr7_4:8432857-8432876 | Msa1138720:intron | 40.0% |
| CGGTCTAGTTAATGTAATGC+AGG | - | chr7_4:8433182-8433201 | Msa1138720:intron | 40.0% | |
| TAATGTAATGCAGGACTGTC+CGG | - | chr7_4:8433191-8433210 | Msa1138720:intron | 40.0% | |
| AAAGGACAAATGTGACCATC+AGG | - | chr7_4:8433335-8433354 | Msa1138720:CDS | 40.0% | |
| AAGGACAAATGTGACCATCA+GGG | - | chr7_4:8433336-8433355 | Msa1138720:CDS | 40.0% | |
| GAATCGTACCCTATCAAGTT+GGG | - | chr7_4:8433475-8433494 | Msa1138720:CDS | 40.0% | |
| !! | GCTTTTGGGAAAACTGTTTC+AGG | + | chr7_4:8433512-8433531 | None:intergenic | 40.0% |
| ! | TCCCAAAAGCTATAGGTTGA+TGG | - | chr7_4:8433522-8433541 | Msa1138720:CDS | 40.0% |
| ! | CACCATCAACCTATAGCTTT+TGG | + | chr7_4:8433527-8433546 | None:intergenic | 40.0% |
| AGCTTAATAGAAGTCTCCTG+GGG | - | chr7_4:8433556-8433575 | Msa1138720:CDS | 40.0% | |
| !!! | CAAAGTGTCTCGCCATTTTT+TGG | - | chr7_4:8433629-8433648 | Msa1138720:CDS | 40.0% |
| TATACATTCCCACGAAGGTT+CGG | + | chr7_4:8433722-8433741 | None:intergenic | 40.0% | |
| AGCAGACCTCTAAATCTAGT+AGG | + | chr7_4:8433793-8433812 | None:intergenic | 40.0% | |
| TACTAGATTTAGAGGTCTGC+TGG | - | chr7_4:8433792-8433811 | Msa1138720:CDS | 40.0% | |
| !! | TTTGGGTTCTGAGCTTATGA+CGG | - | chr7_4:8433818-8433837 | Msa1138720:CDS | 40.0% |
| ! | TTTTCCTTCCCTGAATACCT+TGG | - | chr7_4:8433875-8433894 | Msa1138720:CDS | 40.0% |
| !! | ACGTTATCGACTTTGGTTGA+TGG | + | chr7_4:8432297-8432316 | None:intergenic | 40.0% |
| CAAAGAATCCATTGTGTGCA+AGG | + | chr7_4:8432338-8432357 | None:intergenic | 40.0% | |
| GCTTCAGAGCTTCTTGTTAA+AGG | - | chr7_4:8432414-8432433 | Msa1138720:intron | 40.0% | |
| TCAAGAACACACTCAACCAT+TGG | + | chr7_4:8432459-8432478 | None:intergenic | 40.0% | |
| ! | CAATTTTGTGTTTGAGGGGT+TGG | - | chr7_4:8432665-8432684 | Msa1138720:intron | 40.0% |
| TGTTGTGTTTGATCGTCCAA+AGG | - | chr7_4:8432764-8432783 | Msa1138720:intron | 40.0% | |
| ! | CCATTTGACTTATGTTGGTG+GGG | - | chr7_4:8432812-8432831 | Msa1138720:intron | 40.0% |
| AGCAAAACAGCATCAGCTTT+AGG | + | chr7_4:8432855-8432874 | None:intergenic | 40.0% | |
| !!! | AGCTGATGCTGTTTTGCTTA+AGG | - | chr7_4:8432857-8432876 | Msa1138720:intron | 40.0% |
| CGGTCTAGTTAATGTAATGC+AGG | - | chr7_4:8433182-8433201 | Msa1138720:intron | 40.0% | |
| TAATGTAATGCAGGACTGTC+CGG | - | chr7_4:8433191-8433210 | Msa1138720:intron | 40.0% | |
| AAAGGACAAATGTGACCATC+AGG | - | chr7_4:8433335-8433354 | Msa1138720:CDS | 40.0% | |
| AAGGACAAATGTGACCATCA+GGG | - | chr7_4:8433336-8433355 | Msa1138720:CDS | 40.0% | |
| GAATCGTACCCTATCAAGTT+GGG | - | chr7_4:8433475-8433494 | Msa1138720:CDS | 40.0% | |
| !! | GCTTTTGGGAAAACTGTTTC+AGG | + | chr7_4:8433512-8433531 | None:intergenic | 40.0% |
| ! | TCCCAAAAGCTATAGGTTGA+TGG | - | chr7_4:8433522-8433541 | Msa1138720:CDS | 40.0% |
| ! | CACCATCAACCTATAGCTTT+TGG | + | chr7_4:8433527-8433546 | None:intergenic | 40.0% |
| AGCTTAATAGAAGTCTCCTG+GGG | - | chr7_4:8433556-8433575 | Msa1138720:CDS | 40.0% | |
| !!! | CAAAGTGTCTCGCCATTTTT+TGG | - | chr7_4:8433629-8433648 | Msa1138720:CDS | 40.0% |
| TATACATTCCCACGAAGGTT+CGG | + | chr7_4:8433722-8433741 | None:intergenic | 40.0% | |
| AGCAGACCTCTAAATCTAGT+AGG | + | chr7_4:8433793-8433812 | None:intergenic | 40.0% | |
| TACTAGATTTAGAGGTCTGC+TGG | - | chr7_4:8433792-8433811 | Msa1138720:CDS | 40.0% | |
| !! | TTTGGGTTCTGAGCTTATGA+CGG | - | chr7_4:8433818-8433837 | Msa1138720:CDS | 40.0% |
| ! | TTTTCCTTCCCTGAATACCT+TGG | - | chr7_4:8433875-8433894 | Msa1138720:CDS | 40.0% |
| ATGCGTTACCTTGCACACAA+TGG | - | chr7_4:8432327-8432346 | Msa1138720:intron | 45.0% | |
| TCAATTGTTGATGTTGGCGG+TGG | - | chr7_4:8432690-8432709 | Msa1138720:intron | 45.0% | |
| CCCCACCAACATAAGTCAAA+TGG | + | chr7_4:8432815-8432834 | None:intergenic | 45.0% | |
| TTTCATTGAACCGGAGCCAT+CGG | - | chr7_4:8433108-8433127 | Msa1138720:intron | 45.0% | |
| TTCACATATACCGATGGCTC+CGG | + | chr7_4:8433121-8433140 | None:intergenic | 45.0% | |
| TGTTCGGTTAGACTGGAAAC+CGG | + | chr7_4:8433213-8433232 | None:intergenic | 45.0% | |
| AAAAATTGGGTCGAACTGGC+CGG | + | chr7_4:8433238-8433257 | None:intergenic | 45.0% | |
| TGCGTAAGACCTGAACTAGA+AGG | - | chr7_4:8433367-8433386 | Msa1138720:CDS | 45.0% | |
| GGAATCGTACCCTATCAAGT+TGG | - | chr7_4:8433474-8433493 | Msa1138720:CDS | 45.0% | |
| GCTTAATAGAAGTCTCCTGG+GGG | - | chr7_4:8433557-8433576 | Msa1138720:CDS | 45.0% | |
| TGAAGCCACTAAATCTGGCA+GGG | + | chr7_4:8433604-8433623 | None:intergenic | 45.0% | |
| ATGAAGCCACTAAATCTGGC+AGG | + | chr7_4:8433605-8433624 | None:intergenic | 45.0% | |
| !!! | GTGTCTCGCCATTTTTTGGA+AGG | - | chr7_4:8433633-8433652 | Msa1138720:CDS | 45.0% |
| TCGCAAGGCCTTCCAAAAAA+TGG | + | chr7_4:8433644-8433663 | None:intergenic | 45.0% | |
| CTCGTTATACATTCCCACGA+AGG | + | chr7_4:8433727-8433746 | None:intergenic | 45.0% | |
| TCGTGGGAATGTATAACGAG+CGG | - | chr7_4:8433727-8433746 | Msa1138720:CDS | 45.0% | |
| ! | TTAGAGGTCTGCTGGACTTT+TGG | - | chr7_4:8433800-8433819 | Msa1138720:CDS | 45.0% |
| ! | TAGAGGTCTGCTGGACTTTT+GGG | - | chr7_4:8433801-8433820 | Msa1138720:CDS | 45.0% |
| ! | AGTCAAGGCCAAGGTATTCA+GGG | + | chr7_4:8433886-8433905 | None:intergenic | 45.0% |
| ! | AAGTCAAGGCCAAGGTATTC+AGG | + | chr7_4:8433887-8433906 | None:intergenic | 45.0% |
| ATCGAACAAAGTCAAGGCCA+AGG | + | chr7_4:8433895-8433914 | None:intergenic | 45.0% | |
| ATGCGTTACCTTGCACACAA+TGG | - | chr7_4:8432327-8432346 | Msa1138720:intron | 45.0% | |
| TCAATTGTTGATGTTGGCGG+TGG | - | chr7_4:8432690-8432709 | Msa1138720:intron | 45.0% | |
| CCCCACCAACATAAGTCAAA+TGG | + | chr7_4:8432815-8432834 | None:intergenic | 45.0% | |
| TTTCATTGAACCGGAGCCAT+CGG | - | chr7_4:8433108-8433127 | Msa1138720:intron | 45.0% | |
| TTCACATATACCGATGGCTC+CGG | + | chr7_4:8433121-8433140 | None:intergenic | 45.0% | |
| TGTTCGGTTAGACTGGAAAC+CGG | + | chr7_4:8433213-8433232 | None:intergenic | 45.0% | |
| AAAAATTGGGTCGAACTGGC+CGG | + | chr7_4:8433238-8433257 | None:intergenic | 45.0% | |
| TGCGTAAGACCTGAACTAGA+AGG | - | chr7_4:8433367-8433386 | Msa1138720:CDS | 45.0% | |
| GGAATCGTACCCTATCAAGT+TGG | - | chr7_4:8433474-8433493 | Msa1138720:CDS | 45.0% | |
| GCTTAATAGAAGTCTCCTGG+GGG | - | chr7_4:8433557-8433576 | Msa1138720:CDS | 45.0% | |
| TGAAGCCACTAAATCTGGCA+GGG | + | chr7_4:8433604-8433623 | None:intergenic | 45.0% | |
| ATGAAGCCACTAAATCTGGC+AGG | + | chr7_4:8433605-8433624 | None:intergenic | 45.0% | |
| !!! | GTGTCTCGCCATTTTTTGGA+AGG | - | chr7_4:8433633-8433652 | Msa1138720:CDS | 45.0% |
| TCGCAAGGCCTTCCAAAAAA+TGG | + | chr7_4:8433644-8433663 | None:intergenic | 45.0% | |
| CTCGTTATACATTCCCACGA+AGG | + | chr7_4:8433727-8433746 | None:intergenic | 45.0% | |
| TCGTGGGAATGTATAACGAG+CGG | - | chr7_4:8433727-8433746 | Msa1138720:CDS | 45.0% | |
| ! | TTAGAGGTCTGCTGGACTTT+TGG | - | chr7_4:8433800-8433819 | Msa1138720:CDS | 45.0% |
| ! | TAGAGGTCTGCTGGACTTTT+GGG | - | chr7_4:8433801-8433820 | Msa1138720:CDS | 45.0% |
| ! | AGTCAAGGCCAAGGTATTCA+GGG | + | chr7_4:8433886-8433905 | None:intergenic | 45.0% |
| ! | AAGTCAAGGCCAAGGTATTC+AGG | + | chr7_4:8433887-8433906 | None:intergenic | 45.0% |
| ATCGAACAAAGTCAAGGCCA+AGG | + | chr7_4:8433895-8433914 | None:intergenic | 45.0% | |
| !! | ACGCTGCACGTTATCGACTT+TGG | + | chr7_4:8432304-8432323 | None:intergenic | 50.0% |
| GTTGATGTTGGCGGTGGAAA+TGG | - | chr7_4:8432696-8432715 | Msa1138720:intron | 50.0% | |
| TCCAGTCTAACCGAACAGAC+CGG | - | chr7_4:8433216-8433235 | Msa1138720:CDS | 50.0% | |
| GACAAATGTGACCATCAGGG+TGG | - | chr7_4:8433339-8433358 | Msa1138720:CDS | 50.0% | |
| CTAGTTCAGGTCTTACGCAG+CGG | + | chr7_4:8433366-8433385 | None:intergenic | 50.0% | |
| ATTGGTCCAGACCATAACCC+AGG | - | chr7_4:8433398-8433417 | Msa1138720:CDS | 50.0% | |
| TTGGTCCAGACCATAACCCA+GGG | - | chr7_4:8433399-8433418 | Msa1138720:CDS | 50.0% | |
| ACCATAACCCAGGGGGATTT+GGG | - | chr7_4:8433408-8433427 | Msa1138720:CDS | 50.0% | |
| !! | TACCCTATCAAGTTGGGCGT+TGG | - | chr7_4:8433481-8433500 | Msa1138720:CDS | 50.0% |
| !! | ACCCTATCAAGTTGGGCGTT+GGG | - | chr7_4:8433482-8433501 | Msa1138720:CDS | 50.0% |
| ACCCAACGCCCAACTTGATA+GGG | + | chr7_4:8433486-8433505 | None:intergenic | 50.0% | |
| TTCAGGTGACCTCGTTCCAA+GGG | - | chr7_4:8433669-8433688 | Msa1138720:CDS | 50.0% | |
| ! | AAGGCCAAGGTATTCAGGGA+AGG | + | chr7_4:8433882-8433901 | None:intergenic | 50.0% |
| !! | ACGCTGCACGTTATCGACTT+TGG | + | chr7_4:8432304-8432323 | None:intergenic | 50.0% |
| GTTGATGTTGGCGGTGGAAA+TGG | - | chr7_4:8432696-8432715 | Msa1138720:intron | 50.0% | |
| TCCAGTCTAACCGAACAGAC+CGG | - | chr7_4:8433216-8433235 | Msa1138720:CDS | 50.0% | |
| GACAAATGTGACCATCAGGG+TGG | - | chr7_4:8433339-8433358 | Msa1138720:CDS | 50.0% | |
| CTAGTTCAGGTCTTACGCAG+CGG | + | chr7_4:8433366-8433385 | None:intergenic | 50.0% | |
| ATTGGTCCAGACCATAACCC+AGG | - | chr7_4:8433398-8433417 | Msa1138720:CDS | 50.0% | |
| TTGGTCCAGACCATAACCCA+GGG | - | chr7_4:8433399-8433418 | Msa1138720:CDS | 50.0% | |
| ACCATAACCCAGGGGGATTT+GGG | - | chr7_4:8433408-8433427 | Msa1138720:CDS | 50.0% | |
| !! | TACCCTATCAAGTTGGGCGT+TGG | - | chr7_4:8433481-8433500 | Msa1138720:CDS | 50.0% |
| !! | ACCCTATCAAGTTGGGCGTT+GGG | - | chr7_4:8433482-8433501 | Msa1138720:CDS | 50.0% |
| ACCCAACGCCCAACTTGATA+GGG | + | chr7_4:8433486-8433505 | None:intergenic | 50.0% | |
| TTCAGGTGACCTCGTTCCAA+GGG | - | chr7_4:8433669-8433688 | Msa1138720:CDS | 50.0% | |
| ! | AAGGCCAAGGTATTCAGGGA+AGG | + | chr7_4:8433882-8433901 | None:intergenic | 50.0% |
| GGCGGTGGAAATGGAACAAC+TGG | - | chr7_4:8432705-8432724 | Msa1138720:intron | 55.0% | |
| TGGTCCAGACCATAACCCAG+GGG | - | chr7_4:8433400-8433419 | Msa1138720:CDS | 55.0% | |
| AATCCCCCTGGGTTATGGTC+TGG | + | chr7_4:8433407-8433426 | None:intergenic | 55.0% | |
| GACCATAACCCAGGGGGATT+TGG | - | chr7_4:8433407-8433426 | Msa1138720:CDS | 55.0% | |
| CCATAACCCAGGGGGATTTG+GGG | - | chr7_4:8433409-8433428 | Msa1138720:CDS | 55.0% | |
| ! | TTTGGGGCGTGTCCATTGAG+TGG | - | chr7_4:8433425-8433444 | Msa1138720:CDS | 55.0% |
| GAGAAGGCGACACCACTCAA+TGG | + | chr7_4:8433440-8433459 | None:intergenic | 55.0% | |
| CCTTCTCTCGTGGCTCAGAT+CGG | - | chr7_4:8433453-8433472 | Msa1138720:CDS | 55.0% | |
| GACCCAACGCCCAACTTGAT+AGG | + | chr7_4:8433487-8433506 | None:intergenic | 55.0% | |
| AAGGGCCCTGCCAGATTTAG+TGG | - | chr7_4:8433596-8433615 | Msa1138720:CDS | 55.0% | |
| ! | AAGGCCTTGCGAGCTTGTTC+AGG | - | chr7_4:8433652-8433671 | Msa1138720:CDS | 55.0% |
| GTCACCTGAACAAGCTCGCA+AGG | + | chr7_4:8433659-8433678 | None:intergenic | 55.0% | |
| GTTCAGGTGACCTCGTTCCA+AGG | - | chr7_4:8433668-8433687 | Msa1138720:CDS | 55.0% | |
| ACCTCGTTCCAAGGGCTTTC+TGG | - | chr7_4:8433677-8433696 | Msa1138720:CDS | 55.0% | |
| CCTCGTTCCAAGGGCTTTCT+GGG | - | chr7_4:8433678-8433697 | Msa1138720:CDS | 55.0% | |
| GGCGGTGGAAATGGAACAAC+TGG | - | chr7_4:8432705-8432724 | Msa1138720:intron | 55.0% | |
| TGGTCCAGACCATAACCCAG+GGG | - | chr7_4:8433400-8433419 | Msa1138720:CDS | 55.0% | |
| AATCCCCCTGGGTTATGGTC+TGG | + | chr7_4:8433407-8433426 | None:intergenic | 55.0% | |
| GACCATAACCCAGGGGGATT+TGG | - | chr7_4:8433407-8433426 | Msa1138720:CDS | 55.0% | |
| CCATAACCCAGGGGGATTTG+GGG | - | chr7_4:8433409-8433428 | Msa1138720:CDS | 55.0% | |
| ! | TTTGGGGCGTGTCCATTGAG+TGG | - | chr7_4:8433425-8433444 | Msa1138720:CDS | 55.0% |
| GAGAAGGCGACACCACTCAA+TGG | + | chr7_4:8433440-8433459 | None:intergenic | 55.0% | |
| CCTTCTCTCGTGGCTCAGAT+CGG | - | chr7_4:8433453-8433472 | Msa1138720:CDS | 55.0% | |
| GACCCAACGCCCAACTTGAT+AGG | + | chr7_4:8433487-8433506 | None:intergenic | 55.0% | |
| AAGGGCCCTGCCAGATTTAG+TGG | - | chr7_4:8433596-8433615 | Msa1138720:CDS | 55.0% | |
| ! | AAGGCCTTGCGAGCTTGTTC+AGG | - | chr7_4:8433652-8433671 | Msa1138720:CDS | 55.0% |
| GTCACCTGAACAAGCTCGCA+AGG | + | chr7_4:8433659-8433678 | None:intergenic | 55.0% | |
| GTTCAGGTGACCTCGTTCCA+AGG | - | chr7_4:8433668-8433687 | Msa1138720:CDS | 55.0% | |
| ACCTCGTTCCAAGGGCTTTC+TGG | - | chr7_4:8433677-8433696 | Msa1138720:CDS | 55.0% | |
| CCTCGTTCCAAGGGCTTTCT+GGG | - | chr7_4:8433678-8433697 | Msa1138720:CDS | 55.0% | |
| GCCGGTCTGTTCGGTTAGAC+TGG | + | chr7_4:8433220-8433239 | None:intergenic | 60.0% | |
| GTCGAACTGGCCGGTCTGTT+CGG | + | chr7_4:8433229-8433248 | None:intergenic | 60.0% | |
| GGTCCAGACCATAACCCAGG+GGG | - | chr7_4:8433401-8433420 | Msa1138720:CDS | 60.0% | |
| CCCCAAATCCCCCTGGGTTA+TGG | + | chr7_4:8433412-8433431 | None:intergenic | 60.0% | |
| !! | AGTGGTGTCGCCTTCTCTCG+TGG | - | chr7_4:8433443-8433462 | Msa1138720:CDS | 60.0% |
| CCGATCTGAGCCACGAGAGA+AGG | + | chr7_4:8433456-8433475 | None:intergenic | 60.0% | |
| GGACCCGCCTTTGTCGACAA+GGG | - | chr7_4:8433578-8433597 | Msa1138720:CDS | 60.0% | |
| AGGGCCCTTGTCGACAAAGG+CGG | + | chr7_4:8433585-8433604 | None:intergenic | 60.0% | |
| CCCAGAAAGCCCTTGGAACG+AGG | + | chr7_4:8433681-8433700 | None:intergenic | 60.0% | |
| ! | TTTCTGGGCTGCTGGTCTGG+TGG | - | chr7_4:8433693-8433712 | Msa1138720:CDS | 60.0% |
| ! | TGGTGGTGTCCGAACCTTCG+TGG | - | chr7_4:8433710-8433729 | Msa1138720:CDS | 60.0% |
| GGTGGTGTCCGAACCTTCGT+GGG | - | chr7_4:8433711-8433730 | Msa1138720:CDS | 60.0% | |
| CTCGAGAGTCTCAGGCTCAC+AGG | + | chr7_4:8433844-8433863 | None:intergenic | 60.0% | |
| CTGTGAGCCTGAGACTCTCG+AGG | - | chr7_4:8433842-8433861 | Msa1138720:CDS | 60.0% | |
| ACGCACTCCTCGAGAGTCTC+AGG | + | chr7_4:8433852-8433871 | None:intergenic | 60.0% | |
| GCCGGTCTGTTCGGTTAGAC+TGG | + | chr7_4:8433220-8433239 | None:intergenic | 60.0% | |
| GTCGAACTGGCCGGTCTGTT+CGG | + | chr7_4:8433229-8433248 | None:intergenic | 60.0% | |
| GGTCCAGACCATAACCCAGG+GGG | - | chr7_4:8433401-8433420 | Msa1138720:CDS | 60.0% | |
| CCCCAAATCCCCCTGGGTTA+TGG | + | chr7_4:8433412-8433431 | None:intergenic | 60.0% | |
| !! | AGTGGTGTCGCCTTCTCTCG+TGG | - | chr7_4:8433443-8433462 | Msa1138720:CDS | 60.0% |
| CCGATCTGAGCCACGAGAGA+AGG | + | chr7_4:8433456-8433475 | None:intergenic | 60.0% | |
| GGACCCGCCTTTGTCGACAA+GGG | - | chr7_4:8433578-8433597 | Msa1138720:CDS | 60.0% | |
| AGGGCCCTTGTCGACAAAGG+CGG | + | chr7_4:8433585-8433604 | None:intergenic | 60.0% | |
| CCCAGAAAGCCCTTGGAACG+AGG | + | chr7_4:8433681-8433700 | None:intergenic | 60.0% | |
| ! | TTTCTGGGCTGCTGGTCTGG+TGG | - | chr7_4:8433693-8433712 | Msa1138720:CDS | 60.0% |
| ! | TGGTGGTGTCCGAACCTTCG+TGG | - | chr7_4:8433710-8433729 | Msa1138720:CDS | 60.0% |
| GGTGGTGTCCGAACCTTCGT+GGG | - | chr7_4:8433711-8433730 | Msa1138720:CDS | 60.0% | |
| CTCGAGAGTCTCAGGCTCAC+AGG | + | chr7_4:8433844-8433863 | None:intergenic | 60.0% | |
| CTGTGAGCCTGAGACTCTCG+AGG | - | chr7_4:8433842-8433861 | Msa1138720:CDS | 60.0% | |
| ACGCACTCCTCGAGAGTCTC+AGG | + | chr7_4:8433852-8433871 | None:intergenic | 60.0% | |
| TACGCAGCGGACCACCCTGA+TGG | + | chr7_4:8433353-8433372 | None:intergenic | 65.0% | |
| GACACGCCCCAAATCCCCCT+GGG | + | chr7_4:8433418-8433437 | None:intergenic | 65.0% | |
| GGGACCCGCCTTTGTCGACA+AGG | - | chr7_4:8433577-8433596 | Msa1138720:CDS | 65.0% | |
| GGGCCCTTGTCGACAAAGGC+GGG | + | chr7_4:8433584-8433603 | None:intergenic | 65.0% | |
| GGCAGGGCCCTTGTCGACAA+AGG | + | chr7_4:8433588-8433607 | None:intergenic | 65.0% | |
| CCAGCAGCCCAGAAAGCCCT+TGG | + | chr7_4:8433688-8433707 | None:intergenic | 65.0% | |
| CCAAGGGCTTTCTGGGCTGC+TGG | - | chr7_4:8433685-8433704 | Msa1138720:CDS | 65.0% | |
| GGCTTTCTGGGCTGCTGGTC+TGG | - | chr7_4:8433690-8433709 | Msa1138720:CDS | 65.0% | |
| TACGCAGCGGACCACCCTGA+TGG | + | chr7_4:8433353-8433372 | None:intergenic | 65.0% | |
| GACACGCCCCAAATCCCCCT+GGG | + | chr7_4:8433418-8433437 | None:intergenic | 65.0% | |
| GGGACCCGCCTTTGTCGACA+AGG | - | chr7_4:8433577-8433596 | Msa1138720:CDS | 65.0% | |
| GGGCCCTTGTCGACAAAGGC+GGG | + | chr7_4:8433584-8433603 | None:intergenic | 65.0% | |
| GGCAGGGCCCTTGTCGACAA+AGG | + | chr7_4:8433588-8433607 | None:intergenic | 65.0% | |
| CCAGCAGCCCAGAAAGCCCT+TGG | + | chr7_4:8433688-8433707 | None:intergenic | 65.0% | |
| CCAAGGGCTTTCTGGGCTGC+TGG | - | chr7_4:8433685-8433704 | Msa1138720:CDS | 65.0% | |
| GGCTTTCTGGGCTGCTGGTC+TGG | - | chr7_4:8433690-8433709 | Msa1138720:CDS | 65.0% | |
| GGACACGCCCCAAATCCCCC+TGG | + | chr7_4:8433419-8433438 | None:intergenic | 70.0% | |
| TCGACAAAGGCGGGTCCCCC+AGG | + | chr7_4:8433575-8433594 | None:intergenic | 70.0% | |
| GGACACGCCCCAAATCCCCC+TGG | + | chr7_4:8433419-8433438 | None:intergenic | 70.0% | |
| TCGACAAAGGCGGGTCCCCC+AGG | + | chr7_4:8433575-8433594 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 8432105 | 8433971 | 8432105 | ID=Msa1138720;Name=Msa1138720 |
| chr7_4 | mRNA | 8432105 | 8433971 | 8432105 | ID=Msa1138720-mRNA-1;Parent=Msa1138720;Name=Msa1138720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.5|1|1|2|0|313 |
| chr7_4 | exon | 8433198 | 8433971 | 8433198 | ID=Msa1138720-mRNA-1:exon:2263;Parent=Msa1138720-mRNA-1 |
| chr7_4 | exon | 8432105 | 8432272 | 8432105 | ID=Msa1138720-mRNA-1:exon:2262;Parent=Msa1138720-mRNA-1 |
| chr7_4 | CDS | 8433198 | 8433971 | 8433198 | ID=Msa1138720-mRNA-1:cds;Parent=Msa1138720-mRNA-1 |
| chr7_4 | CDS | 8432105 | 8432272 | 8432105 | ID=Msa1138720-mRNA-1:cds;Parent=Msa1138720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
