Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140960 | XP_003621784.1 | 98.039 | 102 | 1 | 1 | 1 | 101 | 1 | 102 | 9.02e-64 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140960 | G7KVN5 | 98.039 | 102 | 1 | 1 | 1 | 101 | 1 | 102 | 4.31e-64 | 198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1052440 | Msa1140960 | 0.834844 | 2.369344e-56 | -8.615850e-47 |
| Msa1052450 | Msa1140960 | 0.832988 | 6.903512e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140960 | MtrunA17_Chr7g0222601 | 98.039 | 102 | 1 | 1 | 1 | 101 | 1 | 102 | 8.29e-68 | 198 |
| Msa1140960 | MtrunA17_Chr1g0212831 | 78.125 | 96 | 15 | 2 | 8 | 97 | 4 | 99 | 5.11e-45 | 140 |
| Msa1140960 | MtrunA17_Chr7g0263161 | 66.667 | 87 | 27 | 1 | 10 | 96 | 4 | 88 | 4.09e-38 | 122 |
| Msa1140960 | MtrunA17_Chr8g0368511 | 60.345 | 58 | 23 | 0 | 13 | 70 | 48 | 105 | 1.88e-23 | 86.7 |
| Msa1140960 | MtrunA17_Chr1g0171941 | 50.000 | 54 | 27 | 0 | 15 | 68 | 14 | 67 | 9.23e-14 | 65.1 |
| Msa1140960 | MtrunA17_Chr8g0347131 | 48.148 | 54 | 28 | 0 | 15 | 68 | 55 | 108 | 6.89e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140960 | AT3G55240.1 | 80.851 | 94 | 18 | 0 | 7 | 100 | 2 | 95 | 2.62e-51 | 156 |
| Msa1140960 | AT3G28990.1 | 69.048 | 84 | 26 | 0 | 9 | 92 | 4 | 87 | 1.75e-37 | 121 |
| Msa1140960 | AT5G02580.1 | 59.091 | 88 | 34 | 1 | 8 | 95 | 5 | 90 | 1.29e-33 | 112 |
| Msa1140960 | AT5G02580.3 | 56.098 | 82 | 34 | 1 | 14 | 95 | 4 | 83 | 6.71e-28 | 97.4 |
| Msa1140960 | AT1G10657.3 | 48.649 | 74 | 38 | 0 | 13 | 86 | 22 | 95 | 1.98e-23 | 86.7 |
| Msa1140960 | AT1G10657.2 | 50.746 | 67 | 33 | 0 | 13 | 79 | 22 | 88 | 3.26e-22 | 83.6 |
| Msa1140960 | AT5G02580.2 | 73.333 | 45 | 12 | 0 | 8 | 52 | 5 | 49 | 1.70e-19 | 75.5 |
| Msa1140960 | AT1G10657.4 | 36.735 | 98 | 38 | 1 | 13 | 86 | 22 | 119 | 3.77e-18 | 73.9 |
| Msa1140960 | AT1G10657.1 | 37.363 | 91 | 33 | 1 | 13 | 79 | 22 | 112 | 7.68e-17 | 70.5 |
| Msa1140960 | AT5G04090.6 | 48.148 | 54 | 28 | 0 | 15 | 68 | 31 | 84 | 1.25e-13 | 65.1 |
| Msa1140960 | AT5G04090.2 | 48.148 | 54 | 28 | 0 | 15 | 68 | 14 | 67 | 1.55e-13 | 64.7 |
| Msa1140960 | AT3G10250.2 | 48.148 | 54 | 28 | 0 | 15 | 68 | 14 | 67 | 2.29e-13 | 64.3 |
| Msa1140960 | AT3G10250.5 | 48.148 | 54 | 28 | 0 | 15 | 68 | 14 | 67 | 2.29e-13 | 64.3 |
| Msa1140960 | AT3G10250.1 | 48.148 | 54 | 28 | 0 | 15 | 68 | 14 | 67 | 2.29e-13 | 64.3 |
| Msa1140960 | AT3G10250.4 | 48.148 | 54 | 28 | 0 | 15 | 68 | 14 | 67 | 2.29e-13 | 64.3 |
| Msa1140960 | AT3G10250.3 | 48.148 | 54 | 28 | 0 | 15 | 68 | 14 | 67 | 3.50e-13 | 63.9 |
| Msa1140960 | AT2G46420.2 | 43.662 | 71 | 36 | 1 | 2 | 68 | 35 | 105 | 3.75e-11 | 58.2 |
| Msa1140960 | AT2G46420.3 | 43.662 | 71 | 36 | 1 | 2 | 68 | 35 | 105 | 5.46e-11 | 57.8 |
| Msa1140960 | AT2G46420.1 | 43.662 | 71 | 36 | 1 | 2 | 68 | 35 | 105 | 5.46e-11 | 57.8 |
| Msa1140960 | AT3G61700.4 | 42.254 | 71 | 37 | 1 | 2 | 68 | 36 | 106 | 5.58e-11 | 57.8 |
| Msa1140960 | AT3G61700.2 | 42.254 | 71 | 37 | 1 | 2 | 68 | 38 | 108 | 5.74e-11 | 57.8 |
| Msa1140960 | AT3G61700.1 | 42.254 | 71 | 37 | 1 | 2 | 68 | 38 | 108 | 6.29e-11 | 57.8 |
| Msa1140960 | AT3G61700.3 | 42.254 | 71 | 37 | 1 | 2 | 68 | 38 | 108 | 6.29e-11 | 57.8 |
Find 24 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAAAGCCTAGTAATTT+TGG | 0.143728 | 7_4:+13676314 | None:intergenic |
| TGCAAATCTGATCATTGTTA+TGG | 0.266409 | 7_4:+13676115 | None:intergenic |
| TTAGTCGTTGGTTGAACCTT+TGG | 0.358668 | 7_4:+13676403 | None:intergenic |
| TTCTGCTTCATACATTCATA+TGG | 0.365394 | 7_4:-13678718 | Msa1140960:intron |
| AGAAAATTCATTGCTAGTGT+TGG | 0.385850 | 7_4:-13678774 | Msa1140960:five_prime_UTR |
| GCAAATCTGATCATTGTTAT+GGG | 0.392659 | 7_4:+13676116 | None:intergenic |
| CATTGCTAGTGTTGGGATCA+TGG | 0.397200 | 7_4:-13678766 | Msa1140960:exon |
| ATGTATTGCATGCATATATA+TGG | 0.409540 | 7_4:-13676212 | Msa1140960:three_prime_UTR |
| GAAAATTCATTGCTAGTGTT+GGG | 0.423739 | 7_4:-13678773 | Msa1140960:five_prime_UTR |
| TATATATGCATGCAATACAT+AGG | 0.484608 | 7_4:+13676215 | None:intergenic |
| TGCAACAAGCCAAAATTACT+AGG | 0.491025 | 7_4:-13676323 | Msa1140960:three_prime_UTR |
| CATCTGGTTTGTCTCTTCCT+CGG | 0.492956 | 7_4:+13676451 | None:intergenic |
| ATTGCTAGTGTTGGGATCAT+GGG | 0.493543 | 7_4:-13678765 | Msa1140960:exon |
| GTCGTTGGTTGAACCTTTGG+AGG | 0.501576 | 7_4:+13676406 | None:intergenic |
| GATTTGACATATGCAACATA+AGG | 0.517335 | 7_4:+13678861 | None:intergenic |
| TAGTTGCATAACTTTATATG+TGG | 0.532767 | 7_4:-13676240 | Msa1140960:three_prime_UTR |
| CATGACAAAGGAAGAATGCA+TGG | 0.541507 | 7_4:-13678540 | Msa1140960:CDS |
| AAGCCTGTCATAACTTCCAC+TGG | 0.541686 | 7_4:-13678491 | Msa1140960:intron |
| ATATATGCATGCAATACATA+GGG | 0.561068 | 7_4:+13676216 | None:intergenic |
| ATCATCTCAGATTCCTCCAA+AGG | 0.566751 | 7_4:-13676419 | Msa1140960:CDS |
| ATACCAGTGGAAGTTATGAC+AGG | 0.586270 | 7_4:+13678488 | None:intergenic |
| ATGTGCAGTTTGGAATGAGC+TGG | 0.594898 | 7_4:-13676537 | Msa1140960:intron |
| TTTGATCTTTCACATGACAA+AGG | 0.610557 | 7_4:-13678552 | Msa1140960:CDS |
| CAACTAGTGACATATTACAC+TGG | 0.649158 | 7_4:+13676257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAATTTTAATTACTAA+GGG | + | chr7_4:13677307-13677326 | None:intergenic | 10.0% |
| !! | TAATAAAAAATATAGAAAGT+TGG | + | chr7_4:13677383-13677402 | None:intergenic | 10.0% |
| !!! | ACACTATATATTTTTTTTTT+TGG | - | chr7_4:13677621-13677640 | Msa1140960:intron | 10.0% |
| !! | TAAAAATATTAAAAATGTTG+TGG | - | chr7_4:13677666-13677685 | Msa1140960:intron | 10.0% |
| !! | AAAAATATTAAAAATGTTGT+GGG | - | chr7_4:13677667-13677686 | Msa1140960:intron | 10.0% |
| !! | ATAAATGTTTATTTAATGTA+CGG | + | chr7_4:13678410-13678429 | None:intergenic | 10.0% |
| !!! | ATAATATTTTGAAAACAAGA+TGG | + | chr7_4:13676553-13676572 | None:intergenic | 15.0% |
| !!! | TTCTTTTATGAGATAAATTT+AGG | - | chr7_4:13677057-13677076 | Msa1140960:intron | 15.0% |
| !!! | TCTTTTATGAGATAAATTTA+GGG | - | chr7_4:13677058-13677077 | Msa1140960:intron | 15.0% |
| !! | AAAATAAAAAAAATTAGCGA+CGG | + | chr7_4:13677100-13677119 | None:intergenic | 15.0% |
| !! | AAGTTAAAATGATTTATGTA+TGG | - | chr7_4:13677222-13677241 | Msa1140960:intron | 15.0% |
| !! | AGTTAAAATGATTTATGTAT+GGG | - | chr7_4:13677223-13677242 | Msa1140960:intron | 15.0% |
| !!! | GAAACAAATTTTAATTACTA+AGG | + | chr7_4:13677308-13677327 | None:intergenic | 15.0% |
| !! | TGAATAATTGAAAAATGTAT+CGG | + | chr7_4:13677854-13677873 | None:intergenic | 15.0% |
| !!! | ATTATTACTTTTTCTCTTAT+TGG | - | chr7_4:13677873-13677892 | Msa1140960:intron | 15.0% |
| !!! | TCTTCTATTTGTATTTTATA+TGG | - | chr7_4:13677909-13677928 | Msa1140960:intron | 15.0% |
| !! | TCAAAAAAATATATGTACAA+TGG | + | chr7_4:13678007-13678026 | None:intergenic | 15.0% |
| !! | TACATTCATATGGTATAAAA+AGG | - | chr7_4:13676269-13676288 | Msa1140960:three_prime_UTR | 20.0% |
| !! | ACATTCATATGGTATAAAAA+GGG | - | chr7_4:13676270-13676289 | Msa1140960:three_prime_UTR | 20.0% |
| !! | TGTTGGCATAAAATTAAATT+AGG | - | chr7_4:13676380-13676399 | Msa1140960:three_prime_UTR | 20.0% |
| !! | AAAATATTATACACACACAT+GGG | - | chr7_4:13676563-13676582 | Msa1140960:intron | 20.0% |
| !! | TGTTTGAATAATAAGAGATA+TGG | - | chr7_4:13676655-13676674 | Msa1140960:intron | 20.0% |
| !!! | GAGGGAATTTTTTTTTTTAA+AGG | + | chr7_4:13676886-13676905 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAATTCCCTCAA+AGG | - | chr7_4:13676888-13676907 | Msa1140960:intron | 20.0% |
| !! | AAATAAAAAAAATTAGCGAC+GGG | + | chr7_4:13677099-13677118 | None:intergenic | 20.0% |
| !! | GTTATGTTTGTCTTTAAATT+AGG | + | chr7_4:13677424-13677443 | None:intergenic | 20.0% |
| !! | TTACTATGAAATATTAGACT+TGG | - | chr7_4:13677480-13677499 | Msa1140960:intron | 20.0% |
| !!! | GAAAAGTTTTTAGAATCAAT+AGG | + | chr7_4:13677595-13677614 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTTCGTGTTT+TGG | + | chr7_4:13677792-13677811 | None:intergenic | 20.0% |
| !! | GAATAATTGAAAAATGTATC+GGG | + | chr7_4:13677853-13677872 | None:intergenic | 20.0% |
| !! | AATATATTAACCTATTGCAT+GGG | - | chr7_4:13677968-13677987 | Msa1140960:intron | 20.0% |
| !! | ATTCTGCAATTTAGTATTAA+AGG | + | chr7_4:13678098-13678117 | None:intergenic | 20.0% |
| !!! | GAACATTTTATTTGAGTTTA+GGG | - | chr7_4:13678152-13678171 | Msa1140960:intron | 20.0% |
| !! | CTTATTATTTCCAATAATCA+AGG | - | chr7_4:13678246-13678265 | Msa1140960:intron | 20.0% |
| ! | ATGAAAAATAGTATGAAGCT+AGG | + | chr7_4:13676151-13676170 | None:intergenic | 25.0% |
| !! | TGAATTTTCTTAGTGAACTT+AGG | + | chr7_4:13676193-13676212 | None:intergenic | 25.0% |
| ! | ATGCTTATTAGTTATCTTCA+TGG | - | chr7_4:13676346-13676365 | Msa1140960:three_prime_UTR | 25.0% |
| !!! | ATTTTGAAAACAAGATGGTT+TGG | + | chr7_4:13676548-13676567 | None:intergenic | 25.0% |
| ! | CAAAATATTATACACACACA+TGG | - | chr7_4:13676562-13676581 | Msa1140960:intron | 25.0% |
| ! | TTATACCTAGTTAGTTATCA+TGG | - | chr7_4:13676702-13676721 | Msa1140960:intron | 25.0% |
| ! | TAAAACCATGATAACTAACT+AGG | + | chr7_4:13676710-13676729 | None:intergenic | 25.0% |
| !! | TTAAATTCCTTTTGTGATCA+CGG | - | chr7_4:13676727-13676746 | Msa1140960:intron | 25.0% |
| !! | CTTTTCATACCATATATAAG+TGG | - | chr7_4:13676816-13676835 | Msa1140960:intron | 25.0% |
| ! | CAAAGTTAACCACTTATATA+TGG | + | chr7_4:13676828-13676847 | None:intergenic | 25.0% |
| ! | AAACTAATTAAAACCCTCAA+AGG | - | chr7_4:13676855-13676874 | Msa1140960:intron | 25.0% |
| !! | TATGAAATATTAGACTTGGT+AGG | - | chr7_4:13677484-13677503 | Msa1140960:intron | 25.0% |
| !! | ATGAAATATTAGACTTGGTA+GGG | - | chr7_4:13677485-13677504 | Msa1140960:intron | 25.0% |
| ! | TCTTTCTTTGTGCATAATTA+GGG | + | chr7_4:13677520-13677539 | None:intergenic | 25.0% |
| ! | ACTAAAGAATAAAGAAGTTG+AGG | - | chr7_4:13677748-13677767 | Msa1140960:intron | 25.0% |
| ! | GAATATATTAACCTATTGCA+TGG | - | chr7_4:13677967-13677986 | Msa1140960:intron | 25.0% |
| !!! | CGAACATTTTATTTGAGTTT+AGG | - | chr7_4:13678151-13678170 | Msa1140960:intron | 25.0% |
| !! | CATTCTTTTTCCTTGATTAT+TGG | + | chr7_4:13678259-13678278 | None:intergenic | 25.0% |
| ! | TAATCAAGGAAAAAGAATGA+AGG | - | chr7_4:13678260-13678279 | Msa1140960:intron | 25.0% |
| ! | GTGTATATATGCTTTATGTT+TGG | + | chr7_4:13678346-13678365 | None:intergenic | 25.0% |
| ! | ACATAAAATAATGTGCAGTT+TGG | - | chr7_4:13678430-13678449 | Msa1140960:intron | 25.0% |
| !!! | AGAGAACAAAGAATTTTTTG+AGG | - | chr7_4:13678467-13678486 | Msa1140960:intron | 25.0% |
| !!! | GCTAATTAATTTTTAGTCGT+TGG | + | chr7_4:13678589-13678608 | None:intergenic | 25.0% |
| !! | ATAGAAAAGCCTAGTAATTT+TGG | + | chr7_4:13678666-13678685 | None:intergenic | 25.0% |
| ! | TAGTTGCATAACTTTATATG+TGG | - | chr7_4:13678737-13678756 | Msa1140960:CDS | 25.0% |
| ! | ATATATGCATGCAATACATA+GGG | + | chr7_4:13678764-13678783 | None:intergenic | 25.0% |
| ! | TATATATGCATGCAATACAT+AGG | + | chr7_4:13678765-13678784 | None:intergenic | 25.0% |
| ! | ATGTATTGCATGCATATATA+TGG | - | chr7_4:13678765-13678784 | Msa1140960:exon | 25.0% |
| GATTTGACATATGCAACATA+AGG | + | chr7_4:13676119-13676138 | None:intergenic | 30.0% | |
| AGAAAATTCATTGCTAGTGT+TGG | - | chr7_4:13676203-13676222 | Msa1140960:three_prime_UTR | 30.0% | |
| GAAAATTCATTGCTAGTGTT+GGG | - | chr7_4:13676204-13676223 | Msa1140960:three_prime_UTR | 30.0% | |
| TTCTGCTTCATACATTCATA+TGG | - | chr7_4:13676259-13676278 | Msa1140960:three_prime_UTR | 30.0% | |
| GTACAGAAAAAAGAGAGAAA+AGG | + | chr7_4:13676310-13676329 | None:intergenic | 30.0% | |
| TTTGATCTTTCACATGACAA+AGG | - | chr7_4:13676425-13676444 | Msa1140960:CDS | 30.0% | |
| TAGAAGTAGATATATACCAG+TGG | + | chr7_4:13676505-13676524 | None:intergenic | 30.0% | |
| ! | CAATTTTGCATGACATGAAA+TGG | + | chr7_4:13676599-13676618 | None:intergenic | 30.0% |
| ! | GAAAAGTATACATACTAGCA+TGG | + | chr7_4:13676802-13676821 | None:intergenic | 30.0% |
| TTTAAAGGACAAACCTTTGA+GGG | + | chr7_4:13676871-13676890 | None:intergenic | 30.0% | |
| !! | TTTTAAAGGACAAACCTTTG+AGG | + | chr7_4:13676872-13676891 | None:intergenic | 30.0% |
| ATGTATTGGAAGTTTACCAA+GGG | - | chr7_4:13676918-13676937 | Msa1140960:intron | 30.0% | |
| TCATCATGAGTAAATTAGAG+TGG | + | chr7_4:13677031-13677050 | None:intergenic | 30.0% | |
| ! | GTAATTCTCCATGTCAATTT+TGG | - | chr7_4:13677150-13677169 | Msa1140960:intron | 30.0% |
| ! | TGAAATATTAGACTTGGTAG+GGG | - | chr7_4:13677486-13677505 | Msa1140960:intron | 30.0% |
| CTTTCTTTGTGCATAATTAG+GGG | + | chr7_4:13677519-13677538 | None:intergenic | 30.0% | |
| CTCTTTCTTTGTGCATAATT+AGG | + | chr7_4:13677521-13677540 | None:intergenic | 30.0% | |
| TGCACAAAGAAAGAGTTTAA+TGG | - | chr7_4:13677526-13677545 | Msa1140960:intron | 30.0% | |
| ACAAAGAAAGAGTTTAATGG+TGG | - | chr7_4:13677529-13677548 | Msa1140960:intron | 30.0% | |
| !! | AGTTTTTCGTGTTTTGGATA+GGG | + | chr7_4:13677786-13677805 | None:intergenic | 30.0% |
| !! | TAGTTTTTCGTGTTTTGGAT+AGG | + | chr7_4:13677787-13677806 | None:intergenic | 30.0% |
| ATCGGGTAAAAAAAGTTGAA+TGG | + | chr7_4:13677836-13677855 | None:intergenic | 30.0% | |
| CTGCAATTTAGTATTAAAGG+CGG | + | chr7_4:13678095-13678114 | None:intergenic | 30.0% | |
| TTTAATGTACGGATGTAATG+TGG | + | chr7_4:13678399-13678418 | None:intergenic | 30.0% | |
| ! | TGAGAATAGATCGTTTTCAA+GGG | + | chr7_4:13678612-13678631 | None:intergenic | 30.0% |
| ! | ATGAGAATAGATCGTTTTCA+AGG | + | chr7_4:13678613-13678632 | None:intergenic | 30.0% |
| GCAAATCTGATCATTGTTAT+GGG | + | chr7_4:13678864-13678883 | None:intergenic | 30.0% | |
| TGCAAATCTGATCATTGTTA+TGG | + | chr7_4:13678865-13678884 | None:intergenic | 30.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | chr7_4:13676242-13676261 | None:intergenic | 35.0% | |
| ! | ACTAGCATGGTTTTCAATTG+AGG | + | chr7_4:13676789-13676808 | None:intergenic | 35.0% |
| ATACATGATCAAGCCTTTGA+GGG | + | chr7_4:13676904-13676923 | None:intergenic | 35.0% | |
| AATACATGATCAAGCCTTTG+AGG | + | chr7_4:13676905-13676924 | None:intergenic | 35.0% | |
| TCAAAGGCTTGATCATGTAT+TGG | - | chr7_4:13676904-13676923 | Msa1140960:intron | 35.0% | |
| CATGTATTGGAAGTTTACCA+AGG | - | chr7_4:13676917-13676936 | Msa1140960:intron | 35.0% | |
| !! | GTCTTTAGAATCTCTTACTC+AGG | - | chr7_4:13676943-13676962 | Msa1140960:intron | 35.0% |
| ! | ATTCTCCATGTCAATTTTGG+TGG | - | chr7_4:13677153-13677172 | Msa1140960:intron | 35.0% |
| !! | TTCTCCATGTCAATTTTGGT+GGG | - | chr7_4:13677154-13677173 | Msa1140960:intron | 35.0% |
| GAATAAAGAAGTTGAGGTCT+TGG | - | chr7_4:13677754-13677773 | Msa1140960:intron | 35.0% | |
| GATATGATATCTTCCACACA+AGG | - | chr7_4:13678316-13678335 | Msa1140960:intron | 35.0% | |
| TATGTTTGGATTTCCTTGTG+TGG | + | chr7_4:13678332-13678351 | None:intergenic | 35.0% | |
| ! | AGATGATTTTCTGTAGCATC+TGG | + | chr7_4:13678545-13678564 | None:intergenic | 35.0% |
| !! | GAGAATAGATCGTTTTCAAG+GGG | + | chr7_4:13678611-13678630 | None:intergenic | 35.0% |
| TGCAACAAGCCAAAATTACT+AGG | - | chr7_4:13678654-13678673 | Msa1140960:intron | 35.0% | |
| CAACTAGTGACATATTACAC+TGG | + | chr7_4:13678723-13678742 | None:intergenic | 35.0% | |
| ! | ATTGCTAGTGTTGGGATCAT+GGG | - | chr7_4:13676212-13676231 | Msa1140960:three_prime_UTR | 40.0% |
| ! | TCATGGCTTTTGACATGTGT+TGG | - | chr7_4:13676363-13676382 | Msa1140960:three_prime_UTR | 40.0% |
| CATGACAAAGGAAGAATGCA+TGG | - | chr7_4:13676437-13676456 | Msa1140960:CDS | 40.0% | |
| ATACCAGTGGAAGTTATGAC+AGG | + | chr7_4:13676492-13676511 | None:intergenic | 40.0% | |
| ATTGCAACCGTGATCACAAA+AGG | + | chr7_4:13676737-13676756 | None:intergenic | 40.0% | |
| ! | GAGATTCTAAAGACATCCCT+TGG | + | chr7_4:13676937-13676956 | None:intergenic | 40.0% |
| TCTCTTACTCAGGAATCTCA+TGG | - | chr7_4:13676953-13676972 | Msa1140960:intron | 40.0% | |
| TTAGCCCACCAAAATTGACA+TGG | + | chr7_4:13677161-13677180 | None:intergenic | 40.0% | |
| ! | AATATTAGACTTGGTAGGGG+TGG | - | chr7_4:13677489-13677508 | Msa1140960:intron | 40.0% |
| ! | ATATTAGACTTGGTAGGGGT+GGG | - | chr7_4:13677490-13677509 | Msa1140960:intron | 40.0% |
| GTTGATCTACACATCTCTGT+CGG | + | chr7_4:13677720-13677739 | None:intergenic | 40.0% | |
| ACGAATTCAACCCATGCAAT+AGG | + | chr7_4:13677981-13678000 | None:intergenic | 40.0% | |
| ATCATCTCAGATTCCTCCAA+AGG | - | chr7_4:13678558-13678577 | Msa1140960:CDS | 40.0% | |
| ! | TTAGTCGTTGGTTGAACCTT+TGG | + | chr7_4:13678577-13678596 | None:intergenic | 40.0% |
| ! | CATTGCTAGTGTTGGGATCA+TGG | - | chr7_4:13676211-13676230 | Msa1140960:three_prime_UTR | 45.0% |
| AAGCCTGTCATAACTTCCAC+TGG | - | chr7_4:13676486-13676505 | Msa1140960:CDS | 45.0% | |
| ! | ATGTGCAGTTTGGAATGAGC+TGG | - | chr7_4:13678440-13678459 | Msa1140960:intron | 45.0% |
| ! | CATCTGGTTTGTCTCTTCCT+CGG | + | chr7_4:13678529-13678548 | None:intergenic | 45.0% |
| !!! | ATTTTTTGAATAAATATATA+TGG | - | chr7_4:13678793-13678812 | Msa1140960:five_prime_UTR | 5.0% |
| TAAAGACGAGCGAATGTCCG+AGG | - | chr7_4:13678509-13678528 | Msa1140960:CDS | 50.0% | |
| ! | GTCGTTGGTTGAACCTTTGG+AGG | + | chr7_4:13678574-13678593 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 13676106 | 13678893 | 13676106 | ID=Msa1140960;Name=Msa1140960 |
| chr7_4 | mRNA | 13676106 | 13678893 | 13676106 | ID=Msa1140960-mRNA-1;Parent=Msa1140960;Name=Msa1140960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|1|1|1|1|1|3|297|101 |
| chr7_4 | exon | 13676106 | 13676551 | 13676106 | ID=Msa1140960-mRNA-1:exon:3221;Parent=Msa1140960-mRNA-1 |
| chr7_4 | exon | 13678492 | 13678597 | 13678492 | ID=Msa1140960-mRNA-1:exon:3220;Parent=Msa1140960-mRNA-1 |
| chr7_4 | exon | 13678719 | 13678893 | 13678719 | ID=Msa1140960-mRNA-1:exon:3219;Parent=Msa1140960-mRNA-1 |
| chr7_4 | five_prime_UTR | 13678770 | 13678893 | 13678770 | ID=Msa1140960-mRNA-1:five_prime_utr;Parent=Msa1140960-mRNA-1 |
| chr7_4 | CDS | 13678719 | 13678769 | 13678719 | ID=Msa1140960-mRNA-1:cds;Parent=Msa1140960-mRNA-1 |
| chr7_4 | CDS | 13678492 | 13678597 | 13678492 | ID=Msa1140960-mRNA-1:cds;Parent=Msa1140960-mRNA-1 |
| chr7_4 | CDS | 13676403 | 13676551 | 13676403 | ID=Msa1140960-mRNA-1:cds;Parent=Msa1140960-mRNA-1 |
| chr7_4 | three_prime_UTR | 13676106 | 13676402 | 13676106 | ID=Msa1140960-mRNA-1:three_prime_utr;Parent=Msa1140960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
