Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052440 | XP_003621784.1 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 8.94e-64 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052440 | G7KVN5 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 4.27e-64 | 198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608720 | Msa1052440 | 0.800785 | 1.224299e-48 | -8.615850e-47 |
| Msa0439090 | Msa1052440 | 0.800812 | 1.209276e-48 | -8.615850e-47 |
| Msa0995130 | Msa1052440 | 0.800745 | 1.247671e-48 | -8.615850e-47 |
| Msa1010870 | Msa1052440 | 0.899240 | 2.410685e-77 | -8.615850e-47 |
| Msa1045750 | Msa1052440 | 0.802877 | 4.555090e-49 | -8.615850e-47 |
| Msa1047390 | Msa1052440 | 0.802827 | 4.662797e-49 | -8.615850e-47 |
| Msa1052440 | Msa1052450 | 0.997015 | 1.396563e-235 | -8.615850e-47 |
| Msa1052440 | Msa1096130 | 0.820440 | 6.852270e-53 | -8.615850e-47 |
| Msa1052440 | Msa1140960 | 0.834844 | 2.369344e-56 | -8.615850e-47 |
| Msa1052440 | Msa1140980 | 0.830500 | 2.836036e-55 | -8.615850e-47 |
| Msa1052440 | Msa1372460 | 0.801963 | 7.024616e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052440 | MtrunA17_Chr7g0222601 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 8.22e-68 | 198 |
| Msa1052440 | MtrunA17_Chr1g0212831 | 74.510 | 102 | 17 | 3 | 1 | 96 | 1 | 99 | 3.73e-44 | 138 |
| Msa1052440 | MtrunA17_Chr7g0263161 | 67.816 | 87 | 26 | 1 | 9 | 95 | 4 | 88 | 6.95e-39 | 124 |
| Msa1052440 | MtrunA17_Chr8g0368511 | 54.545 | 66 | 30 | 0 | 4 | 69 | 40 | 105 | 2.24e-24 | 89.0 |
| Msa1052440 | MtrunA17_Chr1g0171941 | 50.000 | 54 | 27 | 0 | 14 | 67 | 14 | 67 | 5.17e-14 | 65.5 |
| Msa1052440 | MtrunA17_Chr8g0347131 | 48.148 | 54 | 28 | 0 | 14 | 67 | 55 | 108 | 3.72e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052440 | AT3G55240.1 | 81.915 | 94 | 17 | 0 | 6 | 99 | 2 | 95 | 5.48e-52 | 158 |
| Msa1052440 | AT3G28990.1 | 70.238 | 84 | 25 | 0 | 8 | 91 | 4 | 87 | 2.23e-38 | 124 |
| Msa1052440 | AT5G02580.1 | 58.511 | 94 | 35 | 2 | 1 | 94 | 1 | 90 | 1.82e-34 | 114 |
| Msa1052440 | AT5G02580.3 | 57.317 | 82 | 33 | 1 | 13 | 94 | 4 | 83 | 1.39e-28 | 99.0 |
| Msa1052440 | AT1G10657.3 | 45.122 | 82 | 45 | 0 | 4 | 85 | 14 | 95 | 2.56e-24 | 89.0 |
| Msa1052440 | AT1G10657.2 | 46.667 | 75 | 40 | 0 | 4 | 78 | 14 | 88 | 4.17e-23 | 85.9 |
| Msa1052440 | AT5G02580.2 | 68.627 | 51 | 14 | 1 | 1 | 51 | 1 | 49 | 1.29e-19 | 75.9 |
| Msa1052440 | AT1G10657.4 | 34.906 | 106 | 45 | 1 | 4 | 85 | 14 | 119 | 7.06e-19 | 75.5 |
| Msa1052440 | AT1G10657.1 | 35.354 | 99 | 40 | 1 | 4 | 78 | 14 | 112 | 1.34e-17 | 72.4 |
| Msa1052440 | AT5G04090.6 | 48.148 | 54 | 28 | 0 | 14 | 67 | 31 | 84 | 7.10e-14 | 65.9 |
| Msa1052440 | AT5G04090.2 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 8.29e-14 | 65.5 |
| Msa1052440 | AT3G10250.2 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1052440 | AT3G10250.5 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1052440 | AT3G10250.1 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1052440 | AT3G10250.4 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1052440 | AT3G10250.3 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 2.24e-13 | 64.3 |
| Msa1052440 | AT2G46420.2 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 1.84e-11 | 58.9 |
| Msa1052440 | AT2G46420.3 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 2.88e-11 | 58.5 |
| Msa1052440 | AT2G46420.1 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 2.88e-11 | 58.5 |
| Msa1052440 | AT3G61700.4 | 43.548 | 62 | 35 | 0 | 6 | 67 | 45 | 106 | 5.19e-11 | 57.8 |
| Msa1052440 | AT3G61700.2 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.38e-11 | 57.8 |
| Msa1052440 | AT3G61700.1 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.62e-11 | 57.8 |
| Msa1052440 | AT3G61700.3 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.62e-11 | 57.8 |
Find 26 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAAAGCCTAGTAATTT+TGG | 0.143728 | 7_2:-20711803 | None:intergenic |
| TGCAAATCTGATCATTGTTA+TGG | 0.266409 | 7_2:-20712002 | None:intergenic |
| TTAGTCGTTGGTTGAACCTT+TGG | 0.358668 | 7_2:-20711714 | None:intergenic |
| TTCTGCTTCATACATTCATA+TGG | 0.365394 | 7_2:+20709405 | Msa1052440:CDS |
| AGAAAATTCATTGCTAGTGT+TGG | 0.385850 | 7_2:+20709352 | Msa1052440:five_prime_UTR |
| GCAAATCTGATCATTGTTAT+GGG | 0.392659 | 7_2:-20712001 | None:intergenic |
| GATCATTGTTATGGGATAGA+TGG | 0.394538 | 7_2:-20711993 | None:intergenic |
| CATTGCTAGTGTTGGGATCA+TGG | 0.397200 | 7_2:+20709360 | Msa1052440:exon |
| ATGTATTGCATGCATATATA+TGG | 0.409540 | 7_2:+20711905 | Msa1052440:three_prime_UTR |
| GAAAATTCATTGCTAGTGTT+GGG | 0.423739 | 7_2:+20709353 | Msa1052440:five_prime_UTR |
| TATATATGCATGCAATACAT+AGG | 0.484608 | 7_2:-20711902 | None:intergenic |
| TGCAACAAGCCAAAATTACT+AGG | 0.491025 | 7_2:+20711794 | Msa1052440:three_prime_UTR |
| CATCTGGTTTGTCTCTTCCT+CGG | 0.492956 | 7_2:-20711666 | None:intergenic |
| ATTGCTAGTGTTGGGATCAT+GGG | 0.493543 | 7_2:+20709361 | Msa1052440:exon |
| GTCGTTGGTTGAACCTTTGG+AGG | 0.501576 | 7_2:-20711711 | None:intergenic |
| AAAATAATGTGCAGTTTGGA+AGG | 0.516152 | 7_2:+20711574 | Msa1052440:intron |
| GATTTGACATATGCAACATA+AGG | 0.517335 | 7_2:-20709265 | None:intergenic |
| TAGTTGCATAACTTTATATG+TGG | 0.532767 | 7_2:+20711877 | Msa1052440:three_prime_UTR |
| CATGACAAAGGAAGAATGCA+TGG | 0.541507 | 7_2:+20709583 | Msa1052440:CDS |
| AAGCCTGTCATAACTTCCAC+TGG | 0.541686 | 7_2:+20709632 | Msa1052440:CDS |
| ATGTGCAGTTTGGAAGGAGC+TGG | 0.542556 | 7_2:+20711580 | Msa1052440:intron |
| ATATATGCATGCAATACATA+GGG | 0.561068 | 7_2:-20711901 | None:intergenic |
| ATCATCTCAGATTCCTCCAA+AGG | 0.566751 | 7_2:+20711698 | Msa1052440:CDS |
| ATACCAGTGGAAGTTATGAC+AGG | 0.586270 | 7_2:-20709635 | None:intergenic |
| TTTGATCTTTCACATGACAA+AGG | 0.610557 | 7_2:+20709571 | Msa1052440:CDS |
| CAACTAGTGACATATTACAC+TGG | 0.649158 | 7_2:-20711860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAAATATAGAAAGT+TGG | - | chr7_2:20710529-20710548 | None:intergenic | 10.0% |
| !!! | ATACACTATATATTTTTTTT+TGG | + | chr7_2:20710765-20710784 | Msa1052440:intron | 10.0% |
| !! | TTAAAAATATTAAAATGTTG+TGG | + | chr7_2:20710809-20710828 | Msa1052440:intron | 10.0% |
| !! | TAAAAATATTAAAATGTTGT+GGG | + | chr7_2:20710810-20710829 | Msa1052440:intron | 10.0% |
| !! | ATAAATGTTTATTTAATGTA+CGG | - | chr7_2:20711550-20711569 | None:intergenic | 10.0% |
| !!! | ATAATATTTTGAAAACAAGA+TGG | - | chr7_2:20709699-20709718 | None:intergenic | 15.0% |
| !!! | AGGGAATTTTTTTTTTTTAA+AGG | - | chr7_2:20710032-20710051 | None:intergenic | 15.0% |
| !!! | TTCTTTTATGAGATAAATTT+AGG | + | chr7_2:20710204-20710223 | Msa1052440:intron | 15.0% |
| !!! | TCTTTTATGAGATAAATTTA+GGG | + | chr7_2:20710205-20710224 | Msa1052440:intron | 15.0% |
| !! | AAATAAAAAAAAATTAGCGA+CGG | - | chr7_2:20710247-20710266 | None:intergenic | 15.0% |
| !! | AAGTTAAAATGATTTATGTA+TGG | + | chr7_2:20710370-20710389 | Msa1052440:intron | 15.0% |
| !! | AGTTAAAATGATTTATGTAT+GGG | + | chr7_2:20710371-20710390 | Msa1052440:intron | 15.0% |
| !! | GAAACAAATTTAATTACTAA+GGG | - | chr7_2:20710454-20710473 | None:intergenic | 15.0% |
| !! | TGAAACAAATTTAATTACTA+AGG | - | chr7_2:20710455-20710474 | None:intergenic | 15.0% |
| !! | TGAATAATTGAAAAATGTAT+CGG | - | chr7_2:20710995-20711014 | None:intergenic | 15.0% |
| !!! | ATTATTACTTTTTCTCTTAT+TGG | + | chr7_2:20711014-20711033 | Msa1052440:intron | 15.0% |
| !!! | TCTTCTATTTGTATTTTATA+TGG | + | chr7_2:20711050-20711069 | Msa1052440:intron | 15.0% |
| !! | TCAAAAAAATATATGTACAA+TGG | - | chr7_2:20711148-20711167 | None:intergenic | 15.0% |
| !!! | AAACATTTTATTTGAGTTTA+GGG | + | chr7_2:20711293-20711312 | Msa1052440:intron | 15.0% |
| !! | TACATTCATATGGTATAAAA+AGG | + | chr7_2:20709415-20709434 | Msa1052440:intron | 20.0% |
| !! | ACATTCATATGGTATAAAAA+GGG | + | chr7_2:20709416-20709435 | Msa1052440:intron | 20.0% |
| !! | TGTTGGCATAAAATTAAATT+AGG | + | chr7_2:20709526-20709545 | Msa1052440:intron | 20.0% |
| !! | AAAATATTATACACACACAT+GGG | + | chr7_2:20709709-20709728 | Msa1052440:intron | 20.0% |
| !! | TGTTTGAATAATAAGAGATA+TGG | + | chr7_2:20709801-20709820 | Msa1052440:intron | 20.0% |
| !! | AAAAAAAAAAATTCCCTCAA+AGG | + | chr7_2:20710035-20710054 | Msa1052440:intron | 20.0% |
| !! | AATAAAAAAAAATTAGCGAC+GGG | - | chr7_2:20710246-20710265 | None:intergenic | 20.0% |
| !! | GTTATGTTTGTCTTTAAATT+AGG | - | chr7_2:20710570-20710589 | None:intergenic | 20.0% |
| !! | TTACTATGAAATATTAGACT+TGG | + | chr7_2:20710626-20710645 | Msa1052440:intron | 20.0% |
| !!! | GAAAAGTTTTTAGAATCAAT+AGG | - | chr7_2:20710741-20710760 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTTCGTGTTT+TGG | - | chr7_2:20710933-20710952 | None:intergenic | 20.0% |
| !! | GAATAATTGAAAAATGTATC+GGG | - | chr7_2:20710994-20711013 | None:intergenic | 20.0% |
| !! | AATATATTAACCTATTGCAT+GGG | + | chr7_2:20711109-20711128 | Msa1052440:intron | 20.0% |
| !! | ATTCTGCAATTTAGTATTAA+AGG | - | chr7_2:20711239-20711258 | None:intergenic | 20.0% |
| !!! | CAAACATTTTATTTGAGTTT+AGG | + | chr7_2:20711292-20711311 | Msa1052440:intron | 20.0% |
| !! | CTTATTATTTCCAATAATCA+AGG | + | chr7_2:20711386-20711405 | Msa1052440:intron | 20.0% |
| ! | ATGAAAAATAGTATGAAGCT+AGG | - | chr7_2:20709300-20709319 | None:intergenic | 25.0% |
| !! | TGAATTTTCTTAGTGAACTT+AGG | - | chr7_2:20709342-20709361 | None:intergenic | 25.0% |
| ! | ATGCTTATTAGTTATCTTCA+TGG | + | chr7_2:20709492-20709511 | Msa1052440:intron | 25.0% |
| ! | CAAAATATTATACACACACA+TGG | + | chr7_2:20709708-20709727 | Msa1052440:intron | 25.0% |
| ! | TTATACCTAGTTAGTTATCA+TGG | + | chr7_2:20709848-20709867 | Msa1052440:intron | 25.0% |
| ! | TAAAACCATGATAACTAACT+AGG | - | chr7_2:20709856-20709875 | None:intergenic | 25.0% |
| !! | TTAAATTCCTTTTGTGATCA+CGG | + | chr7_2:20709873-20709892 | Msa1052440:intron | 25.0% |
| !! | CTTTTCATACCATATATAAG+TGG | + | chr7_2:20709962-20709981 | Msa1052440:intron | 25.0% |
| ! | CAAAGTTAACCACTTATATA+TGG | - | chr7_2:20709974-20709993 | None:intergenic | 25.0% |
| ! | AAACTAATTAAAACCCTCAA+AGG | + | chr7_2:20710001-20710020 | Msa1052440:intron | 25.0% |
| !! | TGTTTTGTGATATAAGTTCA+AGG | + | chr7_2:20710486-20710505 | Msa1052440:intron | 25.0% |
| !! | TATGAAATATTAGACTTGGT+AGG | + | chr7_2:20710630-20710649 | Msa1052440:intron | 25.0% |
| !! | ATGAAATATTAGACTTGGTA+GGG | + | chr7_2:20710631-20710650 | Msa1052440:intron | 25.0% |
| ! | TCTTTCTTTGTGCATAATTA+GGG | - | chr7_2:20710666-20710685 | None:intergenic | 25.0% |
| ! | ACTAAAGAATAAAGAAGTTG+AGG | + | chr7_2:20710889-20710908 | Msa1052440:intron | 25.0% |
| ! | GAATATATTAACCTATTGCA+TGG | + | chr7_2:20711108-20711127 | Msa1052440:intron | 25.0% |
| !! | CATTCTTTTTCCTTGATTAT+TGG | - | chr7_2:20711399-20711418 | None:intergenic | 25.0% |
| ! | TAATCAAGGAAAAAGAATGA+AGG | + | chr7_2:20711400-20711419 | Msa1052440:intron | 25.0% |
| ! | GTGTATATATGCTTTATGTT+TGG | - | chr7_2:20711486-20711505 | None:intergenic | 25.0% |
| ! | ACATAAAATAATGTGCAGTT+TGG | + | chr7_2:20711570-20711589 | Msa1052440:intron | 25.0% |
| !!! | AGAGAACAAAGAATTTTTTG+AGG | + | chr7_2:20711607-20711626 | Msa1052440:CDS | 25.0% |
| !!! | GCTAATTAATTTTTAGTCGT+TGG | - | chr7_2:20711729-20711748 | None:intergenic | 25.0% |
| !! | ATAGAAAAGCCTAGTAATTT+TGG | - | chr7_2:20711806-20711825 | None:intergenic | 25.0% |
| ! | TAGTTGCATAACTTTATATG+TGG | + | chr7_2:20711877-20711896 | Msa1052440:three_prime_UTR | 25.0% |
| ! | ATATATGCATGCAATACATA+GGG | - | chr7_2:20711904-20711923 | None:intergenic | 25.0% |
| ! | TATATATGCATGCAATACAT+AGG | - | chr7_2:20711905-20711924 | None:intergenic | 25.0% |
| ! | ATGTATTGCATGCATATATA+TGG | + | chr7_2:20711905-20711924 | Msa1052440:three_prime_UTR | 25.0% |
| GATTTGACATATGCAACATA+AGG | - | chr7_2:20709268-20709287 | None:intergenic | 30.0% | |
| AGAAAATTCATTGCTAGTGT+TGG | + | chr7_2:20709352-20709371 | Msa1052440:five_prime_UTR | 30.0% | |
| GAAAATTCATTGCTAGTGTT+GGG | + | chr7_2:20709353-20709372 | Msa1052440:five_prime_UTR | 30.0% | |
| TTCTGCTTCATACATTCATA+TGG | + | chr7_2:20709405-20709424 | Msa1052440:CDS | 30.0% | |
| GTACAGAAAAAAGAGAGAAA+AGG | - | chr7_2:20709456-20709475 | None:intergenic | 30.0% | |
| TTTGATCTTTCACATGACAA+AGG | + | chr7_2:20709571-20709590 | Msa1052440:CDS | 30.0% | |
| TAGAAGTAGATATATACCAG+TGG | - | chr7_2:20709651-20709670 | None:intergenic | 30.0% | |
| !! | ATTTTGAAAACAAGATGGCT+TGG | - | chr7_2:20709694-20709713 | None:intergenic | 30.0% |
| ! | CAATTTTGCATGACATGAAA+TGG | - | chr7_2:20709745-20709764 | None:intergenic | 30.0% |
| ! | GAAAAGTATACATACTAGCA+TGG | - | chr7_2:20709948-20709967 | None:intergenic | 30.0% |
| TTTAAAGGACAAACCTTTGA+GGG | - | chr7_2:20710017-20710036 | None:intergenic | 30.0% | |
| !! | TTTTAAAGGACAAACCTTTG+AGG | - | chr7_2:20710018-20710037 | None:intergenic | 30.0% |
| ATGTATTGGAAGTTTACCAA+GGG | + | chr7_2:20710065-20710084 | Msa1052440:intron | 30.0% | |
| TCATCATGAGTAAATTAGAG+TGG | - | chr7_2:20710178-20710197 | None:intergenic | 30.0% | |
| ! | GTAATTCTCCATGTCAATTT+TGG | + | chr7_2:20710298-20710317 | Msa1052440:intron | 30.0% |
| ! | TGAAATATTAGACTTGGTAG+GGG | + | chr7_2:20710632-20710651 | Msa1052440:intron | 30.0% |
| CTTTCTTTGTGCATAATTAG+GGG | - | chr7_2:20710665-20710684 | None:intergenic | 30.0% | |
| CTCTTTCTTTGTGCATAATT+AGG | - | chr7_2:20710667-20710686 | None:intergenic | 30.0% | |
| TGCACAAAGAAAGAGTTTAA+TGG | + | chr7_2:20710672-20710691 | Msa1052440:intron | 30.0% | |
| ACAAAGAAAGAGTTTAATGG+TGG | + | chr7_2:20710675-20710694 | Msa1052440:intron | 30.0% | |
| !! | AGTTTTTCGTGTTTTGGATA+GGG | - | chr7_2:20710927-20710946 | None:intergenic | 30.0% |
| !! | TAGTTTTTCGTGTTTTGGAT+AGG | - | chr7_2:20710928-20710947 | None:intergenic | 30.0% |
| ATCGGGTAAAAAAAGTTGAA+TGG | - | chr7_2:20710977-20710996 | None:intergenic | 30.0% | |
| CTGCAATTTAGTATTAAAGG+CGG | - | chr7_2:20711236-20711255 | None:intergenic | 30.0% | |
| TTTAATGTACGGATGTAATG+TGG | - | chr7_2:20711539-20711558 | None:intergenic | 30.0% | |
| AAAATAATGTGCAGTTTGGA+AGG | + | chr7_2:20711574-20711593 | Msa1052440:intron | 30.0% | |
| ! | TGAGAATAGATCGTTTTCAA+GGG | - | chr7_2:20711752-20711771 | None:intergenic | 30.0% |
| ! | ATGAGAATAGATCGTTTTCA+AGG | - | chr7_2:20711753-20711772 | None:intergenic | 30.0% |
| GCAAATCTGATCATTGTTAT+GGG | - | chr7_2:20712004-20712023 | None:intergenic | 30.0% | |
| TGCAAATCTGATCATTGTTA+TGG | - | chr7_2:20712005-20712024 | None:intergenic | 30.0% | |
| ! | ACTAGCATGGTTTTCAATTG+AGG | - | chr7_2:20709935-20709954 | None:intergenic | 35.0% |
| ATACATGATCAAGCCTTTGA+GGG | - | chr7_2:20710051-20710070 | None:intergenic | 35.0% | |
| AATACATGATCAAGCCTTTG+AGG | - | chr7_2:20710052-20710071 | None:intergenic | 35.0% | |
| TCAAAGGCTTGATCATGTAT+TGG | + | chr7_2:20710051-20710070 | Msa1052440:intron | 35.0% | |
| CATGTATTGGAAGTTTACCA+AGG | + | chr7_2:20710064-20710083 | Msa1052440:intron | 35.0% | |
| !! | GTCTTTAGAATCTCTTACTC+AGG | + | chr7_2:20710090-20710109 | Msa1052440:intron | 35.0% |
| ! | ATTCTCCATGTCAATTTTGG+TGG | + | chr7_2:20710301-20710320 | Msa1052440:intron | 35.0% |
| !! | TTCTCCATGTCAATTTTGGT+GGG | + | chr7_2:20710302-20710321 | Msa1052440:intron | 35.0% |
| GAATAAAGAAGTTGAGGTCT+TGG | + | chr7_2:20710895-20710914 | Msa1052440:intron | 35.0% | |
| GATATGATATCTTCCACACA+AGG | + | chr7_2:20711456-20711475 | Msa1052440:intron | 35.0% | |
| TATGTTTGGATTTCCTTGTG+TGG | - | chr7_2:20711472-20711491 | None:intergenic | 35.0% | |
| ! | AGATGATTTTCTGTAGCATC+TGG | - | chr7_2:20711685-20711704 | None:intergenic | 35.0% |
| !! | GAGAATAGATCGTTTTCAAG+GGG | - | chr7_2:20711751-20711770 | None:intergenic | 35.0% |
| TGCAACAAGCCAAAATTACT+AGG | + | chr7_2:20711794-20711813 | Msa1052440:three_prime_UTR | 35.0% | |
| CAACTAGTGACATATTACAC+TGG | - | chr7_2:20711863-20711882 | None:intergenic | 35.0% | |
| GATCATTGTTATGGGATAGA+TGG | - | chr7_2:20711996-20712015 | None:intergenic | 35.0% | |
| ! | ATTGCTAGTGTTGGGATCAT+GGG | + | chr7_2:20709361-20709380 | Msa1052440:exon | 40.0% |
| GCAGAAGAAGAAGAAGAAGA+AGG | - | chr7_2:20709391-20709410 | None:intergenic | 40.0% | |
| ! | TCATGGCTTTTGACATGTGT+TGG | + | chr7_2:20709509-20709528 | Msa1052440:intron | 40.0% |
| CATGACAAAGGAAGAATGCA+TGG | + | chr7_2:20709583-20709602 | Msa1052440:CDS | 40.0% | |
| ATACCAGTGGAAGTTATGAC+AGG | - | chr7_2:20709638-20709657 | None:intergenic | 40.0% | |
| ATTGCAACCGTGATCACAAA+AGG | - | chr7_2:20709883-20709902 | None:intergenic | 40.0% | |
| ! | GAGATTCTAAAGACATCCCT+TGG | - | chr7_2:20710084-20710103 | None:intergenic | 40.0% |
| TCTCTTACTCAGGAATCTCA+TGG | + | chr7_2:20710100-20710119 | Msa1052440:intron | 40.0% | |
| TTAGCCCACCAAAATTGACA+TGG | - | chr7_2:20710309-20710328 | None:intergenic | 40.0% | |
| ! | AATATTAGACTTGGTAGGGG+TGG | + | chr7_2:20710635-20710654 | Msa1052440:intron | 40.0% |
| ! | ATATTAGACTTGGTAGGGGT+GGG | + | chr7_2:20710636-20710655 | Msa1052440:intron | 40.0% |
| GTTGATCTACACATCTCTGT+CGG | - | chr7_2:20710861-20710880 | None:intergenic | 40.0% | |
| ACGAATTCAACCCATGCAAT+AGG | - | chr7_2:20711122-20711141 | None:intergenic | 40.0% | |
| ATCATCTCAGATTCCTCCAA+AGG | + | chr7_2:20711698-20711717 | Msa1052440:CDS | 40.0% | |
| ! | TTAGTCGTTGGTTGAACCTT+TGG | - | chr7_2:20711717-20711736 | None:intergenic | 40.0% |
| ! | CATTGCTAGTGTTGGGATCA+TGG | + | chr7_2:20709360-20709379 | Msa1052440:exon | 45.0% |
| AAGCCTGTCATAACTTCCAC+TGG | + | chr7_2:20709632-20709651 | Msa1052440:CDS | 45.0% | |
| ! | CATCTGGTTTGTCTCTTCCT+CGG | - | chr7_2:20711669-20711688 | None:intergenic | 45.0% |
| !!! | ATTTTTTGAATAAATATATA+TGG | + | chr7_2:20711933-20711952 | Msa1052440:three_prime_UTR | 5.0% |
| ATGTGCAGTTTGGAAGGAGC+TGG | + | chr7_2:20711580-20711599 | Msa1052440:intron | 50.0% | |
| TAAAGACGAGCGAATGTCCG+AGG | + | chr7_2:20711649-20711668 | Msa1052440:CDS | 50.0% | |
| ! | GTCGTTGGTTGAACCTTTGG+AGG | - | chr7_2:20711714-20711733 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 20709255 | 20712033 | 20709255 | ID=Msa1052440;Name=Msa1052440 |
| chr7_2 | mRNA | 20709255 | 20712033 | 20709255 | ID=Msa1052440-mRNA-1;Parent=Msa1052440;Name=Msa1052440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|1|1|1|1|1|3|297|100 |
| chr7_2 | exon | 20709255 | 20709426 | 20709255 | ID=Msa1052440-mRNA-1:exon:4673;Parent=Msa1052440-mRNA-1 |
| chr7_2 | exon | 20709548 | 20709653 | 20709548 | ID=Msa1052440-mRNA-1:exon:4674;Parent=Msa1052440-mRNA-1 |
| chr7_2 | exon | 20711588 | 20712033 | 20711588 | ID=Msa1052440-mRNA-1:exon:4675;Parent=Msa1052440-mRNA-1 |
| chr7_2 | five_prime_UTR | 20709255 | 20709378 | 20709255 | ID=Msa1052440-mRNA-1:five_prime_utr;Parent=Msa1052440-mRNA-1 |
| chr7_2 | CDS | 20709379 | 20709426 | 20709379 | ID=Msa1052440-mRNA-1:cds;Parent=Msa1052440-mRNA-1 |
| chr7_2 | CDS | 20709548 | 20709653 | 20709548 | ID=Msa1052440-mRNA-1:cds;Parent=Msa1052440-mRNA-1 |
| chr7_2 | CDS | 20711588 | 20711736 | 20711588 | ID=Msa1052440-mRNA-1:cds;Parent=Msa1052440-mRNA-1 |
| chr7_2 | three_prime_UTR | 20711737 | 20712033 | 20711737 | ID=Msa1052440-mRNA-1:three_prime_utr;Parent=Msa1052440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
