Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052450 | XP_003621784.1 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 8.94e-64 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052450 | G7KVN5 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 4.27e-64 | 198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608720 | Msa1052450 | 0.803769 | 2.975543e-49 | -8.615850e-47 |
| Msa0162170 | Msa1052450 | 0.800514 | 1.390465e-48 | -8.615850e-47 |
| Msa0439090 | Msa1052450 | 0.801729 | 7.847142e-49 | -8.615850e-47 |
| Msa0995130 | Msa1052450 | 0.804866 | 1.758962e-49 | -8.615850e-47 |
| Msa1010870 | Msa1052450 | 0.898755 | 3.888487e-77 | -8.615850e-47 |
| Msa1037440 | Msa1052450 | 0.800934 | 1.141899e-48 | -8.615850e-47 |
| Msa1045750 | Msa1052450 | 0.803001 | 4.293571e-49 | -8.615850e-47 |
| Msa1047390 | Msa1052450 | 0.803249 | 3.814015e-49 | -8.615850e-47 |
| Msa1052440 | Msa1052450 | 0.997015 | 1.396563e-235 | -8.615850e-47 |
| Msa1052450 | Msa1096130 | 0.817857 | 2.652397e-52 | -8.615850e-47 |
| Msa1052450 | Msa1140960 | 0.832988 | 6.903512e-56 | -8.615850e-47 |
| Msa1052450 | Msa1140980 | 0.829543 | 4.854708e-55 | -8.615850e-47 |
| Msa1052450 | Msa1372460 | 0.801962 | 7.028128e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052450 | MtrunA17_Chr7g0222601 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 8.22e-68 | 198 |
| Msa1052450 | MtrunA17_Chr1g0212831 | 74.510 | 102 | 17 | 3 | 1 | 96 | 1 | 99 | 3.73e-44 | 138 |
| Msa1052450 | MtrunA17_Chr7g0263161 | 67.816 | 87 | 26 | 1 | 9 | 95 | 4 | 88 | 6.95e-39 | 124 |
| Msa1052450 | MtrunA17_Chr8g0368511 | 54.545 | 66 | 30 | 0 | 4 | 69 | 40 | 105 | 2.24e-24 | 89.0 |
| Msa1052450 | MtrunA17_Chr1g0171941 | 50.000 | 54 | 27 | 0 | 14 | 67 | 14 | 67 | 5.17e-14 | 65.5 |
| Msa1052450 | MtrunA17_Chr8g0347131 | 48.148 | 54 | 28 | 0 | 14 | 67 | 55 | 108 | 3.72e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052450 | AT3G55240.1 | 81.915 | 94 | 17 | 0 | 6 | 99 | 2 | 95 | 5.48e-52 | 158 |
| Msa1052450 | AT3G28990.1 | 70.238 | 84 | 25 | 0 | 8 | 91 | 4 | 87 | 2.23e-38 | 124 |
| Msa1052450 | AT5G02580.1 | 58.511 | 94 | 35 | 2 | 1 | 94 | 1 | 90 | 1.82e-34 | 114 |
| Msa1052450 | AT5G02580.3 | 57.317 | 82 | 33 | 1 | 13 | 94 | 4 | 83 | 1.39e-28 | 99.0 |
| Msa1052450 | AT1G10657.3 | 45.122 | 82 | 45 | 0 | 4 | 85 | 14 | 95 | 2.56e-24 | 89.0 |
| Msa1052450 | AT1G10657.2 | 46.667 | 75 | 40 | 0 | 4 | 78 | 14 | 88 | 4.17e-23 | 85.9 |
| Msa1052450 | AT5G02580.2 | 68.627 | 51 | 14 | 1 | 1 | 51 | 1 | 49 | 1.29e-19 | 75.9 |
| Msa1052450 | AT1G10657.4 | 34.906 | 106 | 45 | 1 | 4 | 85 | 14 | 119 | 7.06e-19 | 75.5 |
| Msa1052450 | AT1G10657.1 | 35.354 | 99 | 40 | 1 | 4 | 78 | 14 | 112 | 1.34e-17 | 72.4 |
| Msa1052450 | AT5G04090.6 | 48.148 | 54 | 28 | 0 | 14 | 67 | 31 | 84 | 7.10e-14 | 65.9 |
| Msa1052450 | AT5G04090.2 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 8.29e-14 | 65.5 |
| Msa1052450 | AT3G10250.2 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1052450 | AT3G10250.5 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1052450 | AT3G10250.1 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1052450 | AT3G10250.4 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1052450 | AT3G10250.3 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 2.24e-13 | 64.3 |
| Msa1052450 | AT2G46420.2 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 1.84e-11 | 58.9 |
| Msa1052450 | AT2G46420.3 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 2.88e-11 | 58.5 |
| Msa1052450 | AT2G46420.1 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 2.88e-11 | 58.5 |
| Msa1052450 | AT3G61700.4 | 43.548 | 62 | 35 | 0 | 6 | 67 | 45 | 106 | 5.19e-11 | 57.8 |
| Msa1052450 | AT3G61700.2 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.38e-11 | 57.8 |
| Msa1052450 | AT3G61700.1 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.62e-11 | 57.8 |
| Msa1052450 | AT3G61700.3 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.62e-11 | 57.8 |
Find 26 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAAAGCCTAGTAATTT+TGG | 0.143728 | 7_2:-20733724 | None:intergenic |
| TGCAAATCTGATCATTGTTA+TGG | 0.266409 | 7_2:-20733923 | None:intergenic |
| TTAGTCGTTGGTTGAACCTT+TGG | 0.358668 | 7_2:-20733635 | None:intergenic |
| TTCTGCTTCATACATTCATA+TGG | 0.365394 | 7_2:+20731324 | Msa1052450:CDS |
| AGAAAATTCATTGCTAGTGT+TGG | 0.385850 | 7_2:+20731271 | Msa1052450:five_prime_UTR |
| GCAAATCTGATCATTGTTAT+GGG | 0.392659 | 7_2:-20733922 | None:intergenic |
| GATCATTGTTATGGGATAGA+TGG | 0.394538 | 7_2:-20733914 | None:intergenic |
| CATTGCTAGTGTTGGGATCA+TGG | 0.397200 | 7_2:+20731279 | Msa1052450:exon |
| ATGTATTGCATGCATATATA+TGG | 0.409540 | 7_2:+20733826 | Msa1052450:three_prime_UTR |
| GAAAATTCATTGCTAGTGTT+GGG | 0.423739 | 7_2:+20731272 | Msa1052450:five_prime_UTR |
| TATATATGCATGCAATACAT+AGG | 0.484608 | 7_2:-20733823 | None:intergenic |
| TGCAACAAGCCAAAATTACT+AGG | 0.491025 | 7_2:+20733715 | Msa1052450:three_prime_UTR |
| CATCTGGTTTGTCTCTTCCT+CGG | 0.492956 | 7_2:-20733587 | None:intergenic |
| ATTGCTAGTGTTGGGATCAT+GGG | 0.493543 | 7_2:+20731280 | Msa1052450:exon |
| GTCGTTGGTTGAACCTTTGG+AGG | 0.501576 | 7_2:-20733632 | None:intergenic |
| AAAATAATGTGCAGTTTGGA+AGG | 0.516152 | 7_2:+20733495 | Msa1052450:intron |
| GATTTGACATATGCAACATA+AGG | 0.517335 | 7_2:-20731184 | None:intergenic |
| TAGTTGCATAACTTTATATG+TGG | 0.532767 | 7_2:+20733798 | Msa1052450:three_prime_UTR |
| CATGACAAAGGAAGAATGCA+TGG | 0.541507 | 7_2:+20731502 | Msa1052450:CDS |
| AAGCCTGTCATAACTTCCAC+TGG | 0.541686 | 7_2:+20731551 | Msa1052450:CDS |
| ATGTGCAGTTTGGAAGGAGC+TGG | 0.542556 | 7_2:+20733501 | Msa1052450:intron |
| ATATATGCATGCAATACATA+GGG | 0.561068 | 7_2:-20733822 | None:intergenic |
| ATCATCTCAGATTCCTCCAA+AGG | 0.566751 | 7_2:+20733619 | Msa1052450:CDS |
| ATACCAGTGGAAGTTATGAC+AGG | 0.586270 | 7_2:-20731554 | None:intergenic |
| TTTGATCTTTCACATGACAA+AGG | 0.610557 | 7_2:+20731490 | Msa1052450:CDS |
| CAACTAGTGACATATTACAC+TGG | 0.649158 | 7_2:-20733781 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAATTTTAATTACTAA+GGG | - | chr7_2:20732372-20732391 | None:intergenic | 10.0% |
| !! | TAATAAAAAATATAGAAAGT+TGG | - | chr7_2:20732448-20732467 | None:intergenic | 10.0% |
| !!! | ATACACTATATATTTTTTTT+TGG | + | chr7_2:20732683-20732702 | Msa1052450:intron | 10.0% |
| !! | TAAAAATATTAAAAATGTTG+TGG | + | chr7_2:20732728-20732747 | Msa1052450:intron | 10.0% |
| !! | AAAAATATTAAAAATGTTGT+GGG | + | chr7_2:20732729-20732748 | Msa1052450:intron | 10.0% |
| !! | ATAAATGTTTATTTAATGTA+CGG | - | chr7_2:20733471-20733490 | None:intergenic | 10.0% |
| !!! | ATAATATTTTGAAAACAAGA+TGG | - | chr7_2:20731618-20731637 | None:intergenic | 15.0% |
| !!! | TTCTTTTATGAGATAAATTT+AGG | + | chr7_2:20732122-20732141 | Msa1052450:intron | 15.0% |
| !!! | TCTTTTATGAGATAAATTTA+GGG | + | chr7_2:20732123-20732142 | Msa1052450:intron | 15.0% |
| !! | AAATAAAAAAAAATTAGCGA+CGG | - | chr7_2:20732165-20732184 | None:intergenic | 15.0% |
| !! | AAGTTAAAATGATTTATGTA+TGG | + | chr7_2:20732288-20732307 | Msa1052450:intron | 15.0% |
| !! | AGTTAAAATGATTTATGTAT+GGG | + | chr7_2:20732289-20732308 | Msa1052450:intron | 15.0% |
| !!! | GAAACAAATTTTAATTACTA+AGG | - | chr7_2:20732373-20732392 | None:intergenic | 15.0% |
| !! | TGAATAATTGAAAAATGTAT+CGG | - | chr7_2:20732916-20732935 | None:intergenic | 15.0% |
| !!! | ATTATTACTTTTTCTCTTAT+TGG | + | chr7_2:20732935-20732954 | Msa1052450:intron | 15.0% |
| !!! | TCTTCTATTTGTATTTTATA+TGG | + | chr7_2:20732971-20732990 | Msa1052450:intron | 15.0% |
| !! | TCAAAAAAATATATGTACAA+TGG | - | chr7_2:20733069-20733088 | None:intergenic | 15.0% |
| !! | TACATTCATATGGTATAAAA+AGG | + | chr7_2:20731334-20731353 | Msa1052450:intron | 20.0% |
| !! | ACATTCATATGGTATAAAAA+GGG | + | chr7_2:20731335-20731354 | Msa1052450:intron | 20.0% |
| !! | TGTTGGCATAAAATTAAATT+AGG | + | chr7_2:20731445-20731464 | Msa1052450:intron | 20.0% |
| !! | AAAATATTATACACACACAT+GGG | + | chr7_2:20731628-20731647 | Msa1052450:intron | 20.0% |
| !! | TGTTTGAATAATAAGAGATA+TGG | + | chr7_2:20731720-20731739 | Msa1052450:intron | 20.0% |
| !!! | GAGGGAATTTTTTTTTTTAA+AGG | - | chr7_2:20731951-20731970 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAATTCCCTCAA+AGG | + | chr7_2:20731953-20731972 | Msa1052450:intron | 20.0% |
| !! | AATAAAAAAAAATTAGCGAC+GGG | - | chr7_2:20732164-20732183 | None:intergenic | 20.0% |
| !! | GTTATGTTTGTCTTTAAATT+AGG | - | chr7_2:20732489-20732508 | None:intergenic | 20.0% |
| !! | TTACTATGAAATATTAGACT+TGG | + | chr7_2:20732545-20732564 | Msa1052450:intron | 20.0% |
| !!! | AGAAAAGTTTTAGAATCAAT+AGG | - | chr7_2:20732660-20732679 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTTCGTGTTT+TGG | - | chr7_2:20732854-20732873 | None:intergenic | 20.0% |
| !! | GAATAATTGAAAAATGTATC+GGG | - | chr7_2:20732915-20732934 | None:intergenic | 20.0% |
| !! | AATATATTAACCTATTGCAT+GGG | + | chr7_2:20733030-20733049 | Msa1052450:intron | 20.0% |
| !! | ATTCTGCAATTTAGTATTAA+AGG | - | chr7_2:20733160-20733179 | None:intergenic | 20.0% |
| !!! | CAACATTTTATTTGAGTTTA+GGG | + | chr7_2:20733213-20733232 | Msa1052450:intron | 20.0% |
| !! | CTTATTATTTCCAATAATCA+AGG | + | chr7_2:20733307-20733326 | Msa1052450:intron | 20.0% |
| ! | ATGAAAAATAGTATGAAGCT+AGG | - | chr7_2:20731219-20731238 | None:intergenic | 25.0% |
| !! | TGAATTTTCTTAGTGAACTT+AGG | - | chr7_2:20731261-20731280 | None:intergenic | 25.0% |
| ! | ATGCTTATTAGTTATCTTCA+TGG | + | chr7_2:20731411-20731430 | Msa1052450:intron | 25.0% |
| ! | CAAAATATTATACACACACA+TGG | + | chr7_2:20731627-20731646 | Msa1052450:intron | 25.0% |
| ! | TTATACCTAGTTAGTTATCA+TGG | + | chr7_2:20731767-20731786 | Msa1052450:intron | 25.0% |
| ! | TAAAACCATGATAACTAACT+AGG | - | chr7_2:20731775-20731794 | None:intergenic | 25.0% |
| !! | TTAAATTCCTTTTGTGATCA+CGG | + | chr7_2:20731792-20731811 | Msa1052450:intron | 25.0% |
| !! | CTTTTCATACCATATATAAG+TGG | + | chr7_2:20731881-20731900 | Msa1052450:intron | 25.0% |
| ! | CAAAGTTAACCACTTATATA+TGG | - | chr7_2:20731893-20731912 | None:intergenic | 25.0% |
| ! | AAACTAATTAAAACCCTCAA+AGG | + | chr7_2:20731920-20731939 | Msa1052450:intron | 25.0% |
| !! | TGTTTTGTGATATAAGTTCA+AGG | + | chr7_2:20732405-20732424 | Msa1052450:intron | 25.0% |
| !! | TATGAAATATTAGACTTGGT+AGG | + | chr7_2:20732549-20732568 | Msa1052450:intron | 25.0% |
| !! | ATGAAATATTAGACTTGGTA+GGG | + | chr7_2:20732550-20732569 | Msa1052450:intron | 25.0% |
| ! | TCTTTCTTTGTGCATAATTA+GGG | - | chr7_2:20732585-20732604 | None:intergenic | 25.0% |
| ! | ACTAAAGAATAAAGAAGTTG+AGG | + | chr7_2:20732810-20732829 | Msa1052450:intron | 25.0% |
| ! | GAATATATTAACCTATTGCA+TGG | + | chr7_2:20733029-20733048 | Msa1052450:intron | 25.0% |
| !!! | GCAACATTTTATTTGAGTTT+AGG | + | chr7_2:20733212-20733231 | Msa1052450:intron | 25.0% |
| !! | CATTCTTTTTCCTTGATTAT+TGG | - | chr7_2:20733320-20733339 | None:intergenic | 25.0% |
| ! | TAATCAAGGAAAAAGAATGA+AGG | + | chr7_2:20733321-20733340 | Msa1052450:intron | 25.0% |
| ! | GTGTATATATGCTTTATGTT+TGG | - | chr7_2:20733407-20733426 | None:intergenic | 25.0% |
| ! | ACATAAAATAATGTGCAGTT+TGG | + | chr7_2:20733491-20733510 | Msa1052450:intron | 25.0% |
| !!! | AGAGAACAAAGAATTTTTTG+AGG | + | chr7_2:20733528-20733547 | Msa1052450:CDS | 25.0% |
| !!! | GCTAATTAATTTTTAGTCGT+TGG | - | chr7_2:20733650-20733669 | None:intergenic | 25.0% |
| !! | ATAGAAAAGCCTAGTAATTT+TGG | - | chr7_2:20733727-20733746 | None:intergenic | 25.0% |
| ! | TAGTTGCATAACTTTATATG+TGG | + | chr7_2:20733798-20733817 | Msa1052450:three_prime_UTR | 25.0% |
| ! | ATATATGCATGCAATACATA+GGG | - | chr7_2:20733825-20733844 | None:intergenic | 25.0% |
| ! | TATATATGCATGCAATACAT+AGG | - | chr7_2:20733826-20733845 | None:intergenic | 25.0% |
| ! | ATGTATTGCATGCATATATA+TGG | + | chr7_2:20733826-20733845 | Msa1052450:three_prime_UTR | 25.0% |
| GATTTGACATATGCAACATA+AGG | - | chr7_2:20731187-20731206 | None:intergenic | 30.0% | |
| AGAAAATTCATTGCTAGTGT+TGG | + | chr7_2:20731271-20731290 | Msa1052450:five_prime_UTR | 30.0% | |
| GAAAATTCATTGCTAGTGTT+GGG | + | chr7_2:20731272-20731291 | Msa1052450:five_prime_UTR | 30.0% | |
| TTCTGCTTCATACATTCATA+TGG | + | chr7_2:20731324-20731343 | Msa1052450:CDS | 30.0% | |
| GTACAGAAAAAAGAGAGAAA+AGG | - | chr7_2:20731375-20731394 | None:intergenic | 30.0% | |
| TTTGATCTTTCACATGACAA+AGG | + | chr7_2:20731490-20731509 | Msa1052450:CDS | 30.0% | |
| TAGAAGTAGATATATACCAG+TGG | - | chr7_2:20731570-20731589 | None:intergenic | 30.0% | |
| !! | ATTTTGAAAACAAGATGGCT+TGG | - | chr7_2:20731613-20731632 | None:intergenic | 30.0% |
| ! | CAATTTTGCATGACATGAAA+TGG | - | chr7_2:20731664-20731683 | None:intergenic | 30.0% |
| ! | GAAAAGTATACATACTAGCA+TGG | - | chr7_2:20731867-20731886 | None:intergenic | 30.0% |
| TTTAAAGGACAAACCTTTGA+GGG | - | chr7_2:20731936-20731955 | None:intergenic | 30.0% | |
| !! | TTTTAAAGGACAAACCTTTG+AGG | - | chr7_2:20731937-20731956 | None:intergenic | 30.0% |
| ATGTATTGGAAGTTTACCAA+GGG | + | chr7_2:20731983-20732002 | Msa1052450:intron | 30.0% | |
| TCATCATGAGTAAATTAGAG+TGG | - | chr7_2:20732096-20732115 | None:intergenic | 30.0% | |
| ! | GTAATTCTCCATGTCAATTT+TGG | + | chr7_2:20732216-20732235 | Msa1052450:intron | 30.0% |
| ! | TGAAATATTAGACTTGGTAG+GGG | + | chr7_2:20732551-20732570 | Msa1052450:intron | 30.0% |
| CTTTCTTTGTGCATAATTAG+GGG | - | chr7_2:20732584-20732603 | None:intergenic | 30.0% | |
| CTCTTTCTTTGTGCATAATT+AGG | - | chr7_2:20732586-20732605 | None:intergenic | 30.0% | |
| TGCACAAAGAAAGAGTTTAA+TGG | + | chr7_2:20732591-20732610 | Msa1052450:intron | 30.0% | |
| ACAAAGAAAGAGTTTAATGG+TGG | + | chr7_2:20732594-20732613 | Msa1052450:intron | 30.0% | |
| !! | AGTTTTTCGTGTTTTGGATA+GGG | - | chr7_2:20732848-20732867 | None:intergenic | 30.0% |
| !! | TAGTTTTTCGTGTTTTGGAT+AGG | - | chr7_2:20732849-20732868 | None:intergenic | 30.0% |
| ATCGGGTAAAAAAAGTTGAA+TGG | - | chr7_2:20732898-20732917 | None:intergenic | 30.0% | |
| CTGCAATTTAGTATTAAAGG+CGG | - | chr7_2:20733157-20733176 | None:intergenic | 30.0% | |
| TTTAATGTACGGATGTAATG+TGG | - | chr7_2:20733460-20733479 | None:intergenic | 30.0% | |
| AAAATAATGTGCAGTTTGGA+AGG | + | chr7_2:20733495-20733514 | Msa1052450:intron | 30.0% | |
| ! | TGAGAATAGATCGTTTTCAA+GGG | - | chr7_2:20733673-20733692 | None:intergenic | 30.0% |
| ! | ATGAGAATAGATCGTTTTCA+AGG | - | chr7_2:20733674-20733693 | None:intergenic | 30.0% |
| GCAAATCTGATCATTGTTAT+GGG | - | chr7_2:20733925-20733944 | None:intergenic | 30.0% | |
| TGCAAATCTGATCATTGTTA+TGG | - | chr7_2:20733926-20733945 | None:intergenic | 30.0% | |
| ! | ACTAGCATGGTTTTCAATTG+AGG | - | chr7_2:20731854-20731873 | None:intergenic | 35.0% |
| ATACATGATCAAGCCTTTGA+GGG | - | chr7_2:20731969-20731988 | None:intergenic | 35.0% | |
| AATACATGATCAAGCCTTTG+AGG | - | chr7_2:20731970-20731989 | None:intergenic | 35.0% | |
| TCAAAGGCTTGATCATGTAT+TGG | + | chr7_2:20731969-20731988 | Msa1052450:intron | 35.0% | |
| CATGTATTGGAAGTTTACCA+AGG | + | chr7_2:20731982-20732001 | Msa1052450:intron | 35.0% | |
| !! | GTCTTTAGAATCTCTTACTC+AGG | + | chr7_2:20732008-20732027 | Msa1052450:intron | 35.0% |
| ! | ATTCTCCATGTCAATTTTGG+TGG | + | chr7_2:20732219-20732238 | Msa1052450:intron | 35.0% |
| !! | TTCTCCATGTCAATTTTGGT+GGG | + | chr7_2:20732220-20732239 | Msa1052450:intron | 35.0% |
| GAATAAAGAAGTTGAGGTCT+TGG | + | chr7_2:20732816-20732835 | Msa1052450:intron | 35.0% | |
| GATATGATATCTTCCACACA+AGG | + | chr7_2:20733377-20733396 | Msa1052450:intron | 35.0% | |
| TATGTTTGGATTTCCTTGTG+TGG | - | chr7_2:20733393-20733412 | None:intergenic | 35.0% | |
| ! | AGATGATTTTCTGTAGCATC+TGG | - | chr7_2:20733606-20733625 | None:intergenic | 35.0% |
| !! | GAGAATAGATCGTTTTCAAG+GGG | - | chr7_2:20733672-20733691 | None:intergenic | 35.0% |
| TGCAACAAGCCAAAATTACT+AGG | + | chr7_2:20733715-20733734 | Msa1052450:three_prime_UTR | 35.0% | |
| CAACTAGTGACATATTACAC+TGG | - | chr7_2:20733784-20733803 | None:intergenic | 35.0% | |
| GATCATTGTTATGGGATAGA+TGG | - | chr7_2:20733917-20733936 | None:intergenic | 35.0% | |
| ! | ATTGCTAGTGTTGGGATCAT+GGG | + | chr7_2:20731280-20731299 | Msa1052450:exon | 40.0% |
| GCAGAAGAAGAAGAAGAAGA+AGG | - | chr7_2:20731310-20731329 | None:intergenic | 40.0% | |
| ! | TCATGGCTTTTGACATGTGT+TGG | + | chr7_2:20731428-20731447 | Msa1052450:intron | 40.0% |
| CATGACAAAGGAAGAATGCA+TGG | + | chr7_2:20731502-20731521 | Msa1052450:CDS | 40.0% | |
| ATACCAGTGGAAGTTATGAC+AGG | - | chr7_2:20731557-20731576 | None:intergenic | 40.0% | |
| ATTGCAACCGTGATCACAAA+AGG | - | chr7_2:20731802-20731821 | None:intergenic | 40.0% | |
| ! | GAGATTCTAAAGACATCCCT+TGG | - | chr7_2:20732002-20732021 | None:intergenic | 40.0% |
| TCTCTTACTCAGGAATCTCA+TGG | + | chr7_2:20732018-20732037 | Msa1052450:intron | 40.0% | |
| TTAGCCCACCAAAATTGACA+TGG | - | chr7_2:20732227-20732246 | None:intergenic | 40.0% | |
| ! | AATATTAGACTTGGTAGGGG+TGG | + | chr7_2:20732554-20732573 | Msa1052450:intron | 40.0% |
| ! | ATATTAGACTTGGTAGGGGT+GGG | + | chr7_2:20732555-20732574 | Msa1052450:intron | 40.0% |
| GTTGATCTACACATCTCTGT+CGG | - | chr7_2:20732782-20732801 | None:intergenic | 40.0% | |
| ACGAATTCAACCCATGCAAT+AGG | - | chr7_2:20733043-20733062 | None:intergenic | 40.0% | |
| ATCATCTCAGATTCCTCCAA+AGG | + | chr7_2:20733619-20733638 | Msa1052450:CDS | 40.0% | |
| ! | TTAGTCGTTGGTTGAACCTT+TGG | - | chr7_2:20733638-20733657 | None:intergenic | 40.0% |
| ! | CATTGCTAGTGTTGGGATCA+TGG | + | chr7_2:20731279-20731298 | Msa1052450:exon | 45.0% |
| AAGCCTGTCATAACTTCCAC+TGG | + | chr7_2:20731551-20731570 | Msa1052450:CDS | 45.0% | |
| ! | CATCTGGTTTGTCTCTTCCT+CGG | - | chr7_2:20733590-20733609 | None:intergenic | 45.0% |
| !!! | ATTTTTTGAATAAATATATA+TGG | + | chr7_2:20733854-20733873 | Msa1052450:three_prime_UTR | 5.0% |
| ATGTGCAGTTTGGAAGGAGC+TGG | + | chr7_2:20733501-20733520 | Msa1052450:intron | 50.0% | |
| TAAAGACGAGCGAATGTCCG+AGG | + | chr7_2:20733570-20733589 | Msa1052450:CDS | 50.0% | |
| ! | GTCGTTGGTTGAACCTTTGG+AGG | - | chr7_2:20733635-20733654 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 20731174 | 20733954 | 20731174 | ID=Msa1052450;Name=Msa1052450 |
| chr7_2 | mRNA | 20731174 | 20733954 | 20731174 | ID=Msa1052450-mRNA-1;Parent=Msa1052450;Name=Msa1052450-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|1|1|1|1|1|3|297|100 |
| chr7_2 | exon | 20731174 | 20731345 | 20731174 | ID=Msa1052450-mRNA-1:exon:4676;Parent=Msa1052450-mRNA-1 |
| chr7_2 | exon | 20731467 | 20731572 | 20731467 | ID=Msa1052450-mRNA-1:exon:4677;Parent=Msa1052450-mRNA-1 |
| chr7_2 | exon | 20733509 | 20733954 | 20733509 | ID=Msa1052450-mRNA-1:exon:4678;Parent=Msa1052450-mRNA-1 |
| chr7_2 | five_prime_UTR | 20731174 | 20731297 | 20731174 | ID=Msa1052450-mRNA-1:five_prime_utr;Parent=Msa1052450-mRNA-1 |
| chr7_2 | CDS | 20731298 | 20731345 | 20731298 | ID=Msa1052450-mRNA-1:cds;Parent=Msa1052450-mRNA-1 |
| chr7_2 | CDS | 20731467 | 20731572 | 20731467 | ID=Msa1052450-mRNA-1:cds;Parent=Msa1052450-mRNA-1 |
| chr7_2 | CDS | 20733509 | 20733657 | 20733509 | ID=Msa1052450-mRNA-1:cds;Parent=Msa1052450-mRNA-1 |
| chr7_2 | three_prime_UTR | 20733658 | 20733954 | 20733658 | ID=Msa1052450-mRNA-1:three_prime_utr;Parent=Msa1052450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
