Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142760 | GAU44138.1 | 59.149 | 235 | 67 | 1 | 26 | 231 | 342 | 576 | 2.44e-95 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142760 | A0A2Z6NHZ9 | 59.149 | 235 | 67 | 1 | 26 | 231 | 342 | 576 | 1.16e-95 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1011600 | Msa1142760 | 0.881783 | 1.800992e-70 | -8.615850e-47 |
| Msa1095680 | Msa1142760 | 0.905028 | 6.612585e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1142760 | MtrunA17_Chr0c01g0489381 | 63.087 | 149 | 55 | 0 | 83 | 231 | 301 | 449 | 5.27e-64 | 206 |
| Msa1142760 | MtrunA17_Chr5g0406671 | 32.301 | 226 | 123 | 2 | 37 | 232 | 272 | 497 | 5.53e-39 | 140 |
| Msa1142760 | MtrunA17_Chr3g0086461 | 29.237 | 236 | 135 | 4 | 10 | 214 | 10 | 244 | 1.39e-26 | 103 |
| Msa1142760 | MtrunA17_Chr5g0422561 | 28.042 | 189 | 118 | 5 | 37 | 213 | 183 | 365 | 1.62e-21 | 91.7 |
| Msa1142760 | MtrunA17_Chr6g0475971 | 26.961 | 204 | 131 | 5 | 37 | 228 | 318 | 515 | 1.90e-21 | 92.4 |
| Msa1142760 | MtrunA17_Chr7g0225291 | 23.318 | 223 | 138 | 4 | 37 | 228 | 318 | 538 | 2.18e-16 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAGACTCCCACTTTA+AGG | 0.122895 | 7_4:-17505968 | Msa1142760:CDS |
| ATAAACTTTATCAGCCAATT+TGG | 0.206764 | 7_4:+17505798 | None:intergenic |
| AGTCTAAATGGTAAATCTTT+TGG | 0.209864 | 7_4:+17505980 | None:intergenic |
| GTTCCTCTCAACTTTGAAAA+TGG | 0.240069 | 7_4:+17506634 | None:intergenic |
| CCTTAAAGTGGGAGTCTAAA+TGG | 0.278922 | 7_4:+17505968 | None:intergenic |
| GGCTGCTGCACTATCCAAAT+TGG | 0.286697 | 7_4:-17505812 | Msa1142760:CDS |
| AATACAAATATATTGTTCAT+AGG | 0.347711 | 7_4:+17506716 | None:intergenic |
| GCCAATACTCCCTTGCTTTG+CGG | 0.374050 | 7_4:+17504864 | None:intergenic |
| TGGCCATTAGTGTCTTCTAT+TGG | 0.376530 | 7_4:+17506033 | None:intergenic |
| CAATGACTGATTTCCACTAC+TGG | 0.416742 | 7_4:-17505753 | Msa1142760:CDS |
| GGATACCCAACTATAGGAAT+AGG | 0.442304 | 7_4:-17505711 | Msa1142760:intron |
| CCAAGGCTTCTTCCTTAAAG+TGG | 0.451553 | 7_4:+17505956 | None:intergenic |
| GTGTCTACCACCAACCTTCT+CGG | 0.456679 | 7_4:-17506337 | Msa1142760:intron |
| CCACTGGGATACCCAACTAT+AGG | 0.458362 | 7_4:-17505717 | Msa1142760:CDS |
| TGATGGCGCTCAAGGTATCT+TGG | 0.458474 | 7_4:-17506392 | Msa1142760:CDS |
| TTGGCTGATAAAGTTTATGA+AGG | 0.461838 | 7_4:-17505793 | Msa1142760:CDS |
| TGGGACATTGTCAATGCCAC+TGG | 0.471159 | 7_4:-17505733 | Msa1142760:CDS |
| CCACTTTAAGGAAGAAGCCT+TGG | 0.472640 | 7_4:-17505956 | Msa1142760:CDS |
| TACATAGATAATACTAATGA+TGG | 0.480788 | 7_4:-17506409 | Msa1142760:intron |
| TACTCACAATTTGGTTGGAG+TGG | 0.481690 | 7_4:-17505058 | Msa1142760:intron |
| GTATCTGATGGTGGTTTCAA+TGG | 0.489751 | 7_4:-17506007 | Msa1142760:CDS |
| TGTAAAACGTCTTTCTTCCA+AGG | 0.493557 | 7_4:+17505939 | None:intergenic |
| TCCGCAAAGCAAGGGAGTAT+TGG | 0.511594 | 7_4:-17504865 | Msa1142760:CDS |
| GTTCCAATAGAAGACACTAA+TGG | 0.519961 | 7_4:-17506036 | Msa1142760:CDS |
| CAAGGCTTCTTCCTTAAAGT+GGG | 0.522231 | 7_4:+17505957 | None:intergenic |
| TGAATGCATGTGTTCGGGAC+TGG | 0.528106 | 7_4:-17506591 | Msa1142760:CDS |
| TAAATCAAATTATACCGAGA+AGG | 0.529090 | 7_4:+17506323 | None:intergenic |
| CTTTGGTTAATCAACACCAT+TGG | 0.538764 | 7_4:+17504832 | None:intergenic |
| AATACTAATGATGGCGCTCA+AGG | 0.547857 | 7_4:-17506400 | Msa1142760:CDS |
| ATGATCTCATCCGCAAAGCA+AGG | 0.558816 | 7_4:-17504874 | Msa1142760:CDS |
| TCAAATTATACCGAGAAGGT+TGG | 0.560577 | 7_4:+17506327 | None:intergenic |
| CATTGACAATGTCCCAGTAG+TGG | 0.574874 | 7_4:+17505740 | None:intergenic |
| TGGCTGATAAAGTTTATGAA+GGG | 0.575393 | 7_4:-17505792 | Msa1142760:CDS |
| AATTATACCGAGAAGGTTGG+TGG | 0.579928 | 7_4:+17506330 | None:intergenic |
| CAACTCGGCATTATGTGTAG+TGG | 0.586511 | 7_4:-17505106 | Msa1142760:CDS |
| TTTAAGAAGACTTCAACTCA+GGG | 0.596604 | 7_4:-17506745 | None:intergenic |
| TGGCCACTGGTATCTGATGG+TGG | 0.602522 | 7_4:-17506016 | Msa1142760:CDS |
| GGGACATTGTCAATGCCACT+GGG | 0.606989 | 7_4:-17505732 | Msa1142760:CDS |
| ATTCCTTCACAGCGACAACT+CGG | 0.610073 | 7_4:-17505121 | Msa1142760:intron |
| AATGACTGATTTCCACTACT+GGG | 0.612793 | 7_4:-17505752 | Msa1142760:CDS |
| TGATCTCATCCGCAAAGCAA+GGG | 0.613435 | 7_4:-17504873 | Msa1142760:CDS |
| CGGCATTATGTGTAGTGGAG+TGG | 0.617826 | 7_4:-17505101 | Msa1142760:CDS |
| TAGAAGACACTAATGGCCAC+TGG | 0.621867 | 7_4:-17506029 | Msa1142760:CDS |
| GATCATTGTTGCACTCGTTG+TGG | 0.630742 | 7_4:+17504891 | None:intergenic |
| TAATGGCCACTGGTATCTGA+TGG | 0.658056 | 7_4:-17506019 | Msa1142760:CDS |
| TATTGGCAATTGATGACCAA+TGG | 0.658729 | 7_4:-17504848 | Msa1142760:CDS |
| CCTATAGTTGGGTATCCCAG+TGG | 0.697355 | 7_4:+17505717 | None:intergenic |
| GGGACTGGTAGTGTCTAGAG+AGG | 0.699395 | 7_4:-17506576 | Msa1142760:intron |
| AAACCACCATCAGATACCAG+TGG | 0.728616 | 7_4:+17506013 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATAATTGAAAATATAAA+AGG | + | chr7_4:17505715-17505734 | None:intergenic | 10.0% |
| !!! | ATATCATATTTATCTTTTTT+AGG | - | chr7_4:17506370-17506389 | Msa1142760:CDS | 10.0% |
| !! | AGTATAATTGAAAATATAAA+AGG | + | chr7_4:17505715-17505734 | None:intergenic | 10.0% |
| !!! | ATATCATATTTATCTTTTTT+AGG | - | chr7_4:17506370-17506389 | Msa1142760:CDS | 10.0% |
| !! | AATACAAATATATTGTTCAT+AGG | + | chr7_4:17504864-17504883 | None:intergenic | 15.0% |
| !!! | AAGTTTTATGGTTATATTAT+AGG | - | chr7_4:17504916-17504935 | Msa1142760:CDS | 15.0% |
| !!! | AGTTTTATGGTTATATTATA+GGG | - | chr7_4:17504917-17504936 | Msa1142760:CDS | 15.0% |
| !!! | TGATTTATGTTTAAAACATA+GGG | + | chr7_4:17505113-17505132 | None:intergenic | 15.0% |
| !!! | TTGATTTATGTTTAAAACAT+AGG | + | chr7_4:17505114-17505133 | None:intergenic | 15.0% |
| !! | TTGATTTAAAAACAGTTTAA+AGG | - | chr7_4:17505269-17505288 | Msa1142760:intron | 15.0% |
| !!! | TACTACTGATTATTTAATAA+AGG | - | chr7_4:17505331-17505350 | Msa1142760:intron | 15.0% |
| !! | TATTACAACATTTATGATTT+AGG | - | chr7_4:17505744-17505763 | Msa1142760:CDS | 15.0% |
| !!! | AAGTTTTCATCTTAAAAAAA+GGG | - | chr7_4:17505928-17505947 | Msa1142760:CDS | 15.0% |
| !! | AAAATGGTATTTAATATGTT+TGG | - | chr7_4:17505954-17505973 | Msa1142760:CDS | 15.0% |
| !! | ATTAGTATATAAAAACTAAG+TGG | + | chr7_4:17506321-17506340 | None:intergenic | 15.0% |
| !!! | ATATGATATATCAATTTTCT+TGG | + | chr7_4:17506359-17506378 | None:intergenic | 15.0% |
| !! | AATACAAATATATTGTTCAT+AGG | + | chr7_4:17504864-17504883 | None:intergenic | 15.0% |
| !!! | AAGTTTTATGGTTATATTAT+AGG | - | chr7_4:17504916-17504935 | Msa1142760:CDS | 15.0% |
| !!! | AGTTTTATGGTTATATTATA+GGG | - | chr7_4:17504917-17504936 | Msa1142760:CDS | 15.0% |
| !!! | TGATTTATGTTTAAAACATA+GGG | + | chr7_4:17505113-17505132 | None:intergenic | 15.0% |
| !!! | TTGATTTATGTTTAAAACAT+AGG | + | chr7_4:17505114-17505133 | None:intergenic | 15.0% |
| !! | TTGATTTAAAAACAGTTTAA+AGG | - | chr7_4:17505269-17505288 | Msa1142760:intron | 15.0% |
| !!! | TACTACTGATTATTTAATAA+AGG | - | chr7_4:17505331-17505350 | Msa1142760:intron | 15.0% |
| !! | TATTACAACATTTATGATTT+AGG | - | chr7_4:17505744-17505763 | Msa1142760:CDS | 15.0% |
| !!! | AAGTTTTCATCTTAAAAAAA+GGG | - | chr7_4:17505928-17505947 | Msa1142760:CDS | 15.0% |
| !! | AAAATGGTATTTAATATGTT+TGG | - | chr7_4:17505954-17505973 | Msa1142760:CDS | 15.0% |
| !! | ATTAGTATATAAAAACTAAG+TGG | + | chr7_4:17506321-17506340 | None:intergenic | 15.0% |
| !!! | ATATGATATATCAATTTTCT+TGG | + | chr7_4:17506359-17506378 | None:intergenic | 15.0% |
| !!! | GTTATATAACACAAGTTTTA+TGG | - | chr7_4:17504904-17504923 | Msa1142760:CDS | 20.0% |
| !! | TACATAGATAATACTAATGA+TGG | - | chr7_4:17505168-17505187 | Msa1142760:intron | 20.0% |
| !! | GAATAAATATGAAAAACAAG+TGG | + | chr7_4:17505469-17505488 | None:intergenic | 20.0% |
| !! | TTACAATAAGAAACATTGTA+AGG | - | chr7_4:17505656-17505675 | Msa1142760:intron | 20.0% |
| !!! | GTTGTTTTGAAAATGATTTT+GGG | + | chr7_4:17505906-17505925 | None:intergenic | 20.0% |
| !!! | AGTTGTTTTGAAAATGATTT+TGG | + | chr7_4:17505907-17505926 | None:intergenic | 20.0% |
| !!! | CAAGTTTTCATCTTAAAAAA+AGG | - | chr7_4:17505927-17505946 | Msa1142760:CDS | 20.0% |
| !!! | AGTTTTCATCTTAAAAAAAG+GGG | - | chr7_4:17505929-17505948 | Msa1142760:CDS | 20.0% |
| !! | AATAAATCCAAATACGAAAA+TGG | + | chr7_4:17506137-17506156 | None:intergenic | 20.0% |
| !!! | GTATTTGGATTTATTGTTTT+TGG | - | chr7_4:17506142-17506161 | Msa1142760:intron | 20.0% |
| !! | TGGTTAAAGCTAAATAAAAA+AGG | - | chr7_4:17506162-17506181 | Msa1142760:intron | 20.0% |
| !! | GGTTAAAGCTAAATAAAAAA+GGG | - | chr7_4:17506163-17506182 | Msa1142760:intron | 20.0% |
| !! | GTTAAAGCTAAATAAAAAAG+GGG | - | chr7_4:17506164-17506183 | Msa1142760:intron | 20.0% |
| !! | GTTCAATACTAATATTTACA+GGG | - | chr7_4:17506186-17506205 | Msa1142760:intron | 20.0% |
| !! | TTCAATACTAATATTTACAG+GGG | - | chr7_4:17506187-17506206 | Msa1142760:intron | 20.0% |
| !!! | ACATAAACATCTAGTTTATT+AGG | - | chr7_4:17506295-17506314 | Msa1142760:intron | 20.0% |
| !!! | GTTATATAACACAAGTTTTA+TGG | - | chr7_4:17504904-17504923 | Msa1142760:CDS | 20.0% |
| !! | TACATAGATAATACTAATGA+TGG | - | chr7_4:17505168-17505187 | Msa1142760:intron | 20.0% |
| !! | GAATAAATATGAAAAACAAG+TGG | + | chr7_4:17505469-17505488 | None:intergenic | 20.0% |
| !! | TTACAATAAGAAACATTGTA+AGG | - | chr7_4:17505656-17505675 | Msa1142760:intron | 20.0% |
| !!! | GTTGTTTTGAAAATGATTTT+GGG | + | chr7_4:17505906-17505925 | None:intergenic | 20.0% |
| !!! | AGTTGTTTTGAAAATGATTT+TGG | + | chr7_4:17505907-17505926 | None:intergenic | 20.0% |
| !!! | CAAGTTTTCATCTTAAAAAA+AGG | - | chr7_4:17505927-17505946 | Msa1142760:CDS | 20.0% |
| !!! | AGTTTTCATCTTAAAAAAAG+GGG | - | chr7_4:17505929-17505948 | Msa1142760:CDS | 20.0% |
| !! | AATAAATCCAAATACGAAAA+TGG | + | chr7_4:17506137-17506156 | None:intergenic | 20.0% |
| !!! | GTATTTGGATTTATTGTTTT+TGG | - | chr7_4:17506142-17506161 | Msa1142760:intron | 20.0% |
| !! | TGGTTAAAGCTAAATAAAAA+AGG | - | chr7_4:17506162-17506181 | Msa1142760:intron | 20.0% |
| !! | GGTTAAAGCTAAATAAAAAA+GGG | - | chr7_4:17506163-17506182 | Msa1142760:intron | 20.0% |
| !! | GTTAAAGCTAAATAAAAAAG+GGG | - | chr7_4:17506164-17506183 | Msa1142760:intron | 20.0% |
| !! | GTTCAATACTAATATTTACA+GGG | - | chr7_4:17506186-17506205 | Msa1142760:intron | 20.0% |
| !! | TTCAATACTAATATTTACAG+GGG | - | chr7_4:17506187-17506206 | Msa1142760:intron | 20.0% |
| !!! | ACATAAACATCTAGTTTATT+AGG | - | chr7_4:17506295-17506314 | Msa1142760:intron | 20.0% |
| ! | AAGCCATAAATCAACTAATA+TGG | - | chr7_4:17505132-17505151 | Msa1142760:intron | 25.0% |
| !! | ACTCCATATTAGTTGATTTA+TGG | + | chr7_4:17505138-17505157 | None:intergenic | 25.0% |
| ! | TAAATCAAATTATACCGAGA+AGG | + | chr7_4:17505257-17505276 | None:intergenic | 25.0% |
| !! | GTCTAAATGGTAAATCTTTT+GGG | + | chr7_4:17505599-17505618 | None:intergenic | 25.0% |
| !! | AGTCTAAATGGTAAATCTTT+TGG | + | chr7_4:17505600-17505619 | None:intergenic | 25.0% |
| ! | ATAAACTTTATCAGCCAATT+TGG | + | chr7_4:17505782-17505801 | None:intergenic | 25.0% |
| !! | TTTTACCTATTCCTATAGTT+GGG | + | chr7_4:17505874-17505893 | None:intergenic | 25.0% |
| !! | ATTTTACCTATTCCTATAGT+TGG | + | chr7_4:17505875-17505894 | None:intergenic | 25.0% |
| !! | GTTTTCATCTTAAAAAAAGG+GGG | - | chr7_4:17505930-17505949 | Msa1142760:CDS | 25.0% |
| !! | TTGATAGTAATGGTATGTTT+AGG | - | chr7_4:17505981-17506000 | Msa1142760:CDS | 25.0% |
| ! | TGGAAAAACTAAGAAATATC+AGG | + | chr7_4:17506117-17506136 | None:intergenic | 25.0% |
| !! | AGTTTTTCCATTTTCGTATT+TGG | - | chr7_4:17506127-17506146 | Msa1142760:intron | 25.0% |
| ! | GGTTCAATACTAATATTTAC+AGG | - | chr7_4:17506185-17506204 | Msa1142760:intron | 25.0% |
| !! | GAACAATTTTACTCACAATT+TGG | - | chr7_4:17506510-17506529 | Msa1142760:intron | 25.0% |
| !! | AATTTTACTCACAATTTGGT+TGG | - | chr7_4:17506514-17506533 | Msa1142760:intron | 25.0% |
| ! | AAGCCATAAATCAACTAATA+TGG | - | chr7_4:17505132-17505151 | Msa1142760:intron | 25.0% |
| !! | ACTCCATATTAGTTGATTTA+TGG | + | chr7_4:17505138-17505157 | None:intergenic | 25.0% |
| ! | TAAATCAAATTATACCGAGA+AGG | + | chr7_4:17505257-17505276 | None:intergenic | 25.0% |
| !! | GTCTAAATGGTAAATCTTTT+GGG | + | chr7_4:17505599-17505618 | None:intergenic | 25.0% |
| !! | AGTCTAAATGGTAAATCTTT+TGG | + | chr7_4:17505600-17505619 | None:intergenic | 25.0% |
| ! | ATAAACTTTATCAGCCAATT+TGG | + | chr7_4:17505782-17505801 | None:intergenic | 25.0% |
| !! | TTTTACCTATTCCTATAGTT+GGG | + | chr7_4:17505874-17505893 | None:intergenic | 25.0% |
| !! | ATTTTACCTATTCCTATAGT+TGG | + | chr7_4:17505875-17505894 | None:intergenic | 25.0% |
| !! | GTTTTCATCTTAAAAAAAGG+GGG | - | chr7_4:17505930-17505949 | Msa1142760:CDS | 25.0% |
| !! | TTGATAGTAATGGTATGTTT+AGG | - | chr7_4:17505981-17506000 | Msa1142760:CDS | 25.0% |
| ! | TGGAAAAACTAAGAAATATC+AGG | + | chr7_4:17506117-17506136 | None:intergenic | 25.0% |
| !! | AGTTTTTCCATTTTCGTATT+TGG | - | chr7_4:17506127-17506146 | Msa1142760:intron | 25.0% |
| ! | GGTTCAATACTAATATTTAC+AGG | - | chr7_4:17506185-17506204 | Msa1142760:intron | 25.0% |
| !! | GAACAATTTTACTCACAATT+TGG | - | chr7_4:17506510-17506529 | Msa1142760:intron | 25.0% |
| !! | AATTTTACTCACAATTTGGT+TGG | - | chr7_4:17506514-17506533 | Msa1142760:intron | 25.0% |
| ! | TTATCGTTCTCATGCTTTTA+TGG | - | chr7_4:17504882-17504901 | Msa1142760:CDS | 30.0% |
| ! | ATACCATTTTCAAAGTTGAG+AGG | - | chr7_4:17504940-17504959 | Msa1142760:CDS | 30.0% |
| ! | TGATTTTGAATGCATGTGTT+CGG | - | chr7_4:17504980-17504999 | Msa1142760:intron | 30.0% |
| ! | GCTTATGTTTTCTTCATGAA+AGG | - | chr7_4:17505077-17505096 | Msa1142760:CDS | 30.0% |
| ! | ACAACATTTGCAAGTTTTTG+TGG | - | chr7_4:17505218-17505237 | Msa1142760:intron | 30.0% |
| ! | TGGTAATGTTAAAACTCACA+TGG | - | chr7_4:17505431-17505450 | Msa1142760:intron | 30.0% |
| TTGGCTGATAAAGTTTATGA+AGG | - | chr7_4:17505784-17505803 | Msa1142760:CDS | 30.0% | |
| TGGCTGATAAAGTTTATGAA+GGG | - | chr7_4:17505785-17505804 | Msa1142760:CDS | 30.0% | |
| CTTAAAAAAAGGGGGAAAAA+TGG | - | chr7_4:17505938-17505957 | Msa1142760:CDS | 30.0% | |
| ! | GTTTGGACTATTGATAGTAA+TGG | - | chr7_4:17505971-17505990 | Msa1142760:CDS | 30.0% |
| ! | CATTGCATAATACTCTAAGA+TGG | - | chr7_4:17506067-17506086 | Msa1142760:intron | 30.0% |
| AAACTAAGAAATATCAGGAG+AGG | + | chr7_4:17506112-17506131 | None:intergenic | 30.0% | |
| ! | AACTAAAAGTGACAGGTTTT+AGG | - | chr7_4:17506230-17506249 | Msa1142760:intron | 30.0% |
| TGAACGCATATTAACGAAAA+TGG | - | chr7_4:17506257-17506276 | Msa1142760:intron | 30.0% | |
| ! | GCTTTAATTTATAGCAAGTC+TGG | + | chr7_4:17506571-17506590 | None:intergenic | 30.0% |
| ! | TTATCGTTCTCATGCTTTTA+TGG | - | chr7_4:17504882-17504901 | Msa1142760:CDS | 30.0% |
| ! | ATACCATTTTCAAAGTTGAG+AGG | - | chr7_4:17504940-17504959 | Msa1142760:CDS | 30.0% |
| ! | TGATTTTGAATGCATGTGTT+CGG | - | chr7_4:17504980-17504999 | Msa1142760:intron | 30.0% |
| ! | GCTTATGTTTTCTTCATGAA+AGG | - | chr7_4:17505077-17505096 | Msa1142760:CDS | 30.0% |
| ! | ACAACATTTGCAAGTTTTTG+TGG | - | chr7_4:17505218-17505237 | Msa1142760:intron | 30.0% |
| ! | TGGTAATGTTAAAACTCACA+TGG | - | chr7_4:17505431-17505450 | Msa1142760:intron | 30.0% |
| TTGGCTGATAAAGTTTATGA+AGG | - | chr7_4:17505784-17505803 | Msa1142760:CDS | 30.0% | |
| TGGCTGATAAAGTTTATGAA+GGG | - | chr7_4:17505785-17505804 | Msa1142760:CDS | 30.0% | |
| CTTAAAAAAAGGGGGAAAAA+TGG | - | chr7_4:17505938-17505957 | Msa1142760:CDS | 30.0% | |
| ! | GTTTGGACTATTGATAGTAA+TGG | - | chr7_4:17505971-17505990 | Msa1142760:CDS | 30.0% |
| ! | CATTGCATAATACTCTAAGA+TGG | - | chr7_4:17506067-17506086 | Msa1142760:intron | 30.0% |
| AAACTAAGAAATATCAGGAG+AGG | + | chr7_4:17506112-17506131 | None:intergenic | 30.0% | |
| ! | AACTAAAAGTGACAGGTTTT+AGG | - | chr7_4:17506230-17506249 | Msa1142760:intron | 30.0% |
| TGAACGCATATTAACGAAAA+TGG | - | chr7_4:17506257-17506276 | Msa1142760:intron | 30.0% | |
| ! | GCTTTAATTTATAGCAAGTC+TGG | + | chr7_4:17506571-17506590 | None:intergenic | 30.0% |
| ! | GTTCCTCTCAACTTTGAAAA+TGG | + | chr7_4:17504946-17504965 | None:intergenic | 35.0% |
| ! | GATTTTGAATGCATGTGTTC+GGG | - | chr7_4:17504981-17505000 | Msa1142760:intron | 35.0% |
| TCTTCATGAAAGGTTTACTG+TGG | - | chr7_4:17505087-17505106 | Msa1142760:CDS | 35.0% | |
| TCAAATTATACCGAGAAGGT+TGG | + | chr7_4:17505253-17505272 | None:intergenic | 35.0% | |
| !! | ATAAAGGTTGATGTTGCTAG+AGG | - | chr7_4:17505347-17505366 | Msa1142760:intron | 35.0% |
| GATTACCCTTTGATCGATTA+AGG | - | chr7_4:17505407-17505426 | Msa1142760:intron | 35.0% | |
| GTTCCAATAGAAGACACTAA+TGG | - | chr7_4:17505541-17505560 | Msa1142760:intron | 35.0% | |
| TGTAAAACGTCTTTCTTCCA+AGG | + | chr7_4:17505641-17505660 | None:intergenic | 35.0% | |
| ! | AATGACTGATTTCCACTACT+GGG | - | chr7_4:17505825-17505844 | Msa1142760:intron | 35.0% |
| CTTTGTGAACTAAAAGTGAC+AGG | - | chr7_4:17506223-17506242 | Msa1142760:intron | 35.0% | |
| ! | GTTGGAGTGGTAAGAAATTT+TGG | - | chr7_4:17506532-17506551 | Msa1142760:intron | 35.0% |
| ! | TGTGACAATGCAACTTTTGA+TGG | - | chr7_4:17506659-17506678 | Msa1142760:CDS | 35.0% |
| ! | GTGACAATGCAACTTTTGAT+GGG | - | chr7_4:17506660-17506679 | Msa1142760:CDS | 35.0% |
| ! | TATTGGCAATTGATGACCAA+TGG | - | chr7_4:17506729-17506748 | Msa1142760:exon | 35.0% |
| ! | GTTCCTCTCAACTTTGAAAA+TGG | + | chr7_4:17504946-17504965 | None:intergenic | 35.0% |
| ! | GATTTTGAATGCATGTGTTC+GGG | - | chr7_4:17504981-17505000 | Msa1142760:intron | 35.0% |
| TCTTCATGAAAGGTTTACTG+TGG | - | chr7_4:17505087-17505106 | Msa1142760:CDS | 35.0% | |
| TCAAATTATACCGAGAAGGT+TGG | + | chr7_4:17505253-17505272 | None:intergenic | 35.0% | |
| !! | ATAAAGGTTGATGTTGCTAG+AGG | - | chr7_4:17505347-17505366 | Msa1142760:intron | 35.0% |
| GATTACCCTTTGATCGATTA+AGG | - | chr7_4:17505407-17505426 | Msa1142760:intron | 35.0% | |
| GTTCCAATAGAAGACACTAA+TGG | - | chr7_4:17505541-17505560 | Msa1142760:intron | 35.0% | |
| TGTAAAACGTCTTTCTTCCA+AGG | + | chr7_4:17505641-17505660 | None:intergenic | 35.0% | |
| ! | AATGACTGATTTCCACTACT+GGG | - | chr7_4:17505825-17505844 | Msa1142760:intron | 35.0% |
| CTTTGTGAACTAAAAGTGAC+AGG | - | chr7_4:17506223-17506242 | Msa1142760:intron | 35.0% | |
| ! | GTTGGAGTGGTAAGAAATTT+TGG | - | chr7_4:17506532-17506551 | Msa1142760:intron | 35.0% |
| ! | TGTGACAATGCAACTTTTGA+TGG | - | chr7_4:17506659-17506678 | Msa1142760:CDS | 35.0% |
| ! | GTGACAATGCAACTTTTGAT+GGG | - | chr7_4:17506660-17506679 | Msa1142760:CDS | 35.0% |
| ! | TATTGGCAATTGATGACCAA+TGG | - | chr7_4:17506729-17506748 | Msa1142760:exon | 35.0% |
| ! | AATACTAATGATGGCGCTCA+AGG | - | chr7_4:17505177-17505196 | Msa1142760:intron | 40.0% |
| AATTATACCGAGAAGGTTGG+TGG | + | chr7_4:17505250-17505269 | None:intergenic | 40.0% | |
| ! | AGGCTTTGCATGCGTTTTAT+GGG | - | chr7_4:17505381-17505400 | Msa1142760:intron | 40.0% |
| ACCAGCCTTAATCGATCAAA+GGG | + | chr7_4:17505415-17505434 | None:intergenic | 40.0% | |
| TACCAGCCTTAATCGATCAA+AGG | + | chr7_4:17505416-17505435 | None:intergenic | 40.0% | |
| TGGCCATTAGTGTCTTCTAT+TGG | + | chr7_4:17505547-17505566 | None:intergenic | 40.0% | |
| !! | GTATCTGATGGTGGTTTCAA+TGG | - | chr7_4:17505570-17505589 | Msa1142760:intron | 40.0% |
| CCTTAAAGTGGGAGTCTAAA+TGG | + | chr7_4:17505612-17505631 | None:intergenic | 40.0% | |
| CCATTTAGACTCCCACTTTA+AGG | - | chr7_4:17505609-17505628 | Msa1142760:intron | 40.0% | |
| CAAGGCTTCTTCCTTAAAGT+GGG | + | chr7_4:17505623-17505642 | None:intergenic | 40.0% | |
| ! | CAATGACTGATTTCCACTAC+TGG | - | chr7_4:17505824-17505843 | Msa1142760:intron | 40.0% |
| GGATACCCAACTATAGGAAT+AGG | - | chr7_4:17505866-17505885 | Msa1142760:intron | 40.0% | |
| TGGTATGTTTAGGTGAGTGA+TGG | - | chr7_4:17505991-17506010 | Msa1142760:CDS | 40.0% | |
| GGTATGTTTAGGTGAGTGAT+GGG | - | chr7_4:17505992-17506011 | Msa1142760:CDS | 40.0% | |
| !! | TTGCTGAACTTGTTGCTACT+TGG | - | chr7_4:17506028-17506047 | Msa1142760:CDS | 40.0% |
| !! | CTAAGATGGAGAGCTACTTT+TGG | - | chr7_4:17506081-17506100 | Msa1142760:intron | 40.0% |
| TACTCACAATTTGGTTGGAG+TGG | - | chr7_4:17506519-17506538 | Msa1142760:intron | 40.0% | |
| ! | AATACTAATGATGGCGCTCA+AGG | - | chr7_4:17505177-17505196 | Msa1142760:intron | 40.0% |
| AATTATACCGAGAAGGTTGG+TGG | + | chr7_4:17505250-17505269 | None:intergenic | 40.0% | |
| ! | AGGCTTTGCATGCGTTTTAT+GGG | - | chr7_4:17505381-17505400 | Msa1142760:intron | 40.0% |
| ACCAGCCTTAATCGATCAAA+GGG | + | chr7_4:17505415-17505434 | None:intergenic | 40.0% | |
| TACCAGCCTTAATCGATCAA+AGG | + | chr7_4:17505416-17505435 | None:intergenic | 40.0% | |
| TGGCCATTAGTGTCTTCTAT+TGG | + | chr7_4:17505547-17505566 | None:intergenic | 40.0% | |
| !! | GTATCTGATGGTGGTTTCAA+TGG | - | chr7_4:17505570-17505589 | Msa1142760:intron | 40.0% |
| CCTTAAAGTGGGAGTCTAAA+TGG | + | chr7_4:17505612-17505631 | None:intergenic | 40.0% | |
| CCATTTAGACTCCCACTTTA+AGG | - | chr7_4:17505609-17505628 | Msa1142760:intron | 40.0% | |
| CAAGGCTTCTTCCTTAAAGT+GGG | + | chr7_4:17505623-17505642 | None:intergenic | 40.0% | |
| ! | CAATGACTGATTTCCACTAC+TGG | - | chr7_4:17505824-17505843 | Msa1142760:intron | 40.0% |
| GGATACCCAACTATAGGAAT+AGG | - | chr7_4:17505866-17505885 | Msa1142760:intron | 40.0% | |
| TGGTATGTTTAGGTGAGTGA+TGG | - | chr7_4:17505991-17506010 | Msa1142760:CDS | 40.0% | |
| GGTATGTTTAGGTGAGTGAT+GGG | - | chr7_4:17505992-17506011 | Msa1142760:CDS | 40.0% | |
| !! | TTGCTGAACTTGTTGCTACT+TGG | - | chr7_4:17506028-17506047 | Msa1142760:CDS | 40.0% |
| !! | CTAAGATGGAGAGCTACTTT+TGG | - | chr7_4:17506081-17506100 | Msa1142760:intron | 40.0% |
| TACTCACAATTTGGTTGGAG+TGG | - | chr7_4:17506519-17506538 | Msa1142760:intron | 40.0% | |
| TAAAACGCATGCAAAGCCTC+TGG | + | chr7_4:17505380-17505399 | None:intergenic | 45.0% | |
| ! | GAGGCTTTGCATGCGTTTTA+TGG | - | chr7_4:17505380-17505399 | Msa1142760:intron | 45.0% |
| ACCCTTTGATCGATTAAGGC+TGG | - | chr7_4:17505411-17505430 | Msa1142760:intron | 45.0% | |
| TAGAAGACACTAATGGCCAC+TGG | - | chr7_4:17505548-17505567 | Msa1142760:intron | 45.0% | |
| TAATGGCCACTGGTATCTGA+TGG | - | chr7_4:17505558-17505577 | Msa1142760:intron | 45.0% | |
| AAACCACCATCAGATACCAG+TGG | + | chr7_4:17505567-17505586 | None:intergenic | 45.0% | |
| CCAAGGCTTCTTCCTTAAAG+TGG | + | chr7_4:17505624-17505643 | None:intergenic | 45.0% | |
| ! | CCACTTTAAGGAAGAAGCCT+TGG | - | chr7_4:17505621-17505640 | Msa1142760:intron | 45.0% |
| CATTGACAATGTCCCAGTAG+TGG | + | chr7_4:17505840-17505859 | None:intergenic | 45.0% | |
| ATTCCTTCACAGCGACAACT+CGG | - | chr7_4:17506456-17506475 | Msa1142760:intron | 45.0% | |
| CAACTCGGCATTATGTGTAG+TGG | - | chr7_4:17506471-17506490 | Msa1142760:intron | 45.0% | |
| GATCATTGTTGCACTCGTTG+TGG | + | chr7_4:17506689-17506708 | None:intergenic | 45.0% | |
| ATGATCTCATCCGCAAAGCA+AGG | - | chr7_4:17506703-17506722 | Msa1142760:CDS | 45.0% | |
| TGATCTCATCCGCAAAGCAA+GGG | - | chr7_4:17506704-17506723 | Msa1142760:CDS | 45.0% | |
| TAAAACGCATGCAAAGCCTC+TGG | + | chr7_4:17505380-17505399 | None:intergenic | 45.0% | |
| ! | GAGGCTTTGCATGCGTTTTA+TGG | - | chr7_4:17505380-17505399 | Msa1142760:intron | 45.0% |
| ACCCTTTGATCGATTAAGGC+TGG | - | chr7_4:17505411-17505430 | Msa1142760:intron | 45.0% | |
| TAGAAGACACTAATGGCCAC+TGG | - | chr7_4:17505548-17505567 | Msa1142760:intron | 45.0% | |
| TAATGGCCACTGGTATCTGA+TGG | - | chr7_4:17505558-17505577 | Msa1142760:intron | 45.0% | |
| AAACCACCATCAGATACCAG+TGG | + | chr7_4:17505567-17505586 | None:intergenic | 45.0% | |
| CCAAGGCTTCTTCCTTAAAG+TGG | + | chr7_4:17505624-17505643 | None:intergenic | 45.0% | |
| ! | CCACTTTAAGGAAGAAGCCT+TGG | - | chr7_4:17505621-17505640 | Msa1142760:intron | 45.0% |
| CATTGACAATGTCCCAGTAG+TGG | + | chr7_4:17505840-17505859 | None:intergenic | 45.0% | |
| ATTCCTTCACAGCGACAACT+CGG | - | chr7_4:17506456-17506475 | Msa1142760:intron | 45.0% | |
| CAACTCGGCATTATGTGTAG+TGG | - | chr7_4:17506471-17506490 | Msa1142760:intron | 45.0% | |
| GATCATTGTTGCACTCGTTG+TGG | + | chr7_4:17506689-17506708 | None:intergenic | 45.0% | |
| ATGATCTCATCCGCAAAGCA+AGG | - | chr7_4:17506703-17506722 | Msa1142760:CDS | 45.0% | |
| TGATCTCATCCGCAAAGCAA+GGG | - | chr7_4:17506704-17506723 | Msa1142760:CDS | 45.0% | |
| TGAATGCATGTGTTCGGGAC+TGG | - | chr7_4:17504986-17505005 | Msa1142760:intron | 50.0% | |
| ! | TGATGGCGCTCAAGGTATCT+TGG | - | chr7_4:17505185-17505204 | Msa1142760:intron | 50.0% |
| GTGTCTACCACCAACCTTCT+CGG | - | chr7_4:17505240-17505259 | Msa1142760:intron | 50.0% | |
| TGCTAGAGGTTCAACTCCAG+AGG | - | chr7_4:17505361-17505380 | Msa1142760:intron | 50.0% | |
| GGCTGCTGCACTATCCAAAT+TGG | - | chr7_4:17505765-17505784 | Msa1142760:CDS | 50.0% | |
| TGGGACATTGTCAATGCCAC+TGG | - | chr7_4:17505844-17505863 | Msa1142760:intron | 50.0% | |
| GGGACATTGTCAATGCCACT+GGG | - | chr7_4:17505845-17505864 | Msa1142760:intron | 50.0% | |
| CCTATAGTTGGGTATCCCAG+TGG | + | chr7_4:17505863-17505882 | None:intergenic | 50.0% | |
| CCACTGGGATACCCAACTAT+AGG | - | chr7_4:17505860-17505879 | Msa1142760:intron | 50.0% | |
| ! | CGGCATTATGTGTAGTGGAG+TGG | - | chr7_4:17506476-17506495 | Msa1142760:intron | 50.0% |
| ! | TCCGCAAAGCAAGGGAGTAT+TGG | - | chr7_4:17506712-17506731 | Msa1142760:CDS | 50.0% |
| GCCAATACTCCCTTGCTTTG+CGG | + | chr7_4:17506716-17506735 | None:intergenic | 50.0% | |
| TGAATGCATGTGTTCGGGAC+TGG | - | chr7_4:17504986-17505005 | Msa1142760:intron | 50.0% | |
| ! | TGATGGCGCTCAAGGTATCT+TGG | - | chr7_4:17505185-17505204 | Msa1142760:intron | 50.0% |
| GTGTCTACCACCAACCTTCT+CGG | - | chr7_4:17505240-17505259 | Msa1142760:intron | 50.0% | |
| TGCTAGAGGTTCAACTCCAG+AGG | - | chr7_4:17505361-17505380 | Msa1142760:intron | 50.0% | |
| GGCTGCTGCACTATCCAAAT+TGG | - | chr7_4:17505765-17505784 | Msa1142760:CDS | 50.0% | |
| TGGGACATTGTCAATGCCAC+TGG | - | chr7_4:17505844-17505863 | Msa1142760:intron | 50.0% | |
| GGGACATTGTCAATGCCACT+GGG | - | chr7_4:17505845-17505864 | Msa1142760:intron | 50.0% | |
| CCTATAGTTGGGTATCCCAG+TGG | + | chr7_4:17505863-17505882 | None:intergenic | 50.0% | |
| CCACTGGGATACCCAACTAT+AGG | - | chr7_4:17505860-17505879 | Msa1142760:intron | 50.0% | |
| ! | CGGCATTATGTGTAGTGGAG+TGG | - | chr7_4:17506476-17506495 | Msa1142760:intron | 50.0% |
| ! | TCCGCAAAGCAAGGGAGTAT+TGG | - | chr7_4:17506712-17506731 | Msa1142760:CDS | 50.0% |
| GCCAATACTCCCTTGCTTTG+CGG | + | chr7_4:17506716-17506735 | None:intergenic | 50.0% | |
| ! | GGGACTGGTAGTGTCTAGAG+AGG | - | chr7_4:17505001-17505020 | Msa1142760:intron | 55.0% |
| TGGCCACTGGTATCTGATGG+TGG | - | chr7_4:17505561-17505580 | Msa1142760:intron | 55.0% | |
| ATGCCGAGTTGTCGCTGTGA+AGG | + | chr7_4:17506462-17506481 | None:intergenic | 55.0% | |
| ! | GGGACTGGTAGTGTCTAGAG+AGG | - | chr7_4:17505001-17505020 | Msa1142760:intron | 55.0% |
| TGGCCACTGGTATCTGATGG+TGG | - | chr7_4:17505561-17505580 | Msa1142760:intron | 55.0% | |
| ATGCCGAGTTGTCGCTGTGA+AGG | + | chr7_4:17506462-17506481 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 17504841 | 17506758 | 17504841 | ID=Msa1142760;Name=Msa1142760 |
| chr7_4 | mRNA | 17504841 | 17506758 | 17504841 | ID=Msa1142760-mRNA-1;Parent=Msa1142760;Name=Msa1142760-mRNA-1;_AED=0.17;_eAED=0.25;_QI=23|0|0|1|0.8|0.66|6|0|235 |
| chr7_4 | exon | 17506577 | 17506758 | 17506577 | ID=Msa1142760-mRNA-1:exon:3928;Parent=Msa1142760-mRNA-1 |
| chr7_4 | exon | 17506338 | 17506424 | 17506338 | ID=Msa1142760-mRNA-1:exon:3927;Parent=Msa1142760-mRNA-1 |
| chr7_4 | exon | 17505927 | 17506064 | 17505927 | ID=Msa1142760-mRNA-1:exon:3926;Parent=Msa1142760-mRNA-1 |
| chr7_4 | exon | 17505712 | 17505833 | 17505712 | ID=Msa1142760-mRNA-1:exon:3925;Parent=Msa1142760-mRNA-1 |
| chr7_4 | exon | 17505059 | 17505131 | 17505059 | ID=Msa1142760-mRNA-1:exon:3924;Parent=Msa1142760-mRNA-1 |
| chr7_4 | exon | 17504841 | 17504966 | 17504841 | ID=Msa1142760-mRNA-1:exon:3923;Parent=Msa1142760-mRNA-1 |
| chr7_4 | five_prime_UTR | 17506736 | 17506758 | 17506736 | ID=Msa1142760-mRNA-1:five_prime_utr;Parent=Msa1142760-mRNA-1 |
| chr7_4 | CDS | 17506577 | 17506735 | 17506577 | ID=Msa1142760-mRNA-1:cds;Parent=Msa1142760-mRNA-1 |
| chr7_4 | CDS | 17506338 | 17506424 | 17506338 | ID=Msa1142760-mRNA-1:cds;Parent=Msa1142760-mRNA-1 |
| chr7_4 | CDS | 17505927 | 17506064 | 17505927 | ID=Msa1142760-mRNA-1:cds;Parent=Msa1142760-mRNA-1 |
| chr7_4 | CDS | 17505712 | 17505833 | 17505712 | ID=Msa1142760-mRNA-1:cds;Parent=Msa1142760-mRNA-1 |
| chr7_4 | CDS | 17505059 | 17505131 | 17505059 | ID=Msa1142760-mRNA-1:cds;Parent=Msa1142760-mRNA-1 |
| chr7_4 | CDS | 17504841 | 17504966 | 17504841 | ID=Msa1142760-mRNA-1:cds;Parent=Msa1142760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
