Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1095680 | GAU44138.1 | 51.678 | 149 | 43 | 1 | 26 | 145 | 342 | 490 | 1.11e-43 | 162 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1095680 | A0A2Z6NHZ9 | 51.678 | 149 | 43 | 1 | 26 | 145 | 342 | 490 | 5.32e-44 | 162 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1011600 | Msa1095680 | 0.896823 | 2.547840e-76 | -8.615850e-47 |
Msa1095680 | Msa1095690 | 0.851970 | 6.270082e-61 | -8.615850e-47 |
Msa1095680 | Msa1142760 | 0.905028 | 6.612585e-80 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1095680 | MtrunA17_Chr6g0475971 | 34.409 | 93 | 58 | 2 | 37 | 128 | 318 | 408 | 8.94e-15 | 70.9 |
Msa1095680 | MtrunA17_Chr5g0422561 | 34.409 | 93 | 58 | 2 | 37 | 128 | 183 | 273 | 1.69e-14 | 69.7 |
Msa1095680 | MtrunA17_Chr5g0406671 | 29.600 | 125 | 58 | 2 | 37 | 131 | 272 | 396 | 2.44e-14 | 69.3 |
Msa1095680 | MtrunA17_Chr0c01g0489381 | 50.877 | 57 | 28 | 0 | 83 | 139 | 301 | 357 | 5.42e-13 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 31 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTTAGACTCCCACTTTA+AGG | 0.122895 | 7_3:-18702589 | Msa1095680:CDS |
AGTCTAAATGGTAAATCTTT+TGG | 0.209864 | 7_3:+18702601 | None:intergenic |
GTTCCTCTCAACTTTGAAAA+TGG | 0.240069 | 7_3:+18703255 | None:intergenic |
CCTTAAAGTGGGAGTCTAAA+TGG | 0.278922 | 7_3:+18702589 | None:intergenic |
CTGGGATACCCAACTATAAA+AGG | 0.290874 | 7_3:+18702486 | None:intergenic |
AATACAAATATATTGTTCAT+AGG | 0.347711 | 7_3:+18703337 | None:intergenic |
TGGCCATTAGTGTCTTCTAT+TGG | 0.376530 | 7_3:+18702654 | None:intergenic |
TGATGGCGCTCAAGGTATCT+TGG | 0.429487 | 7_3:-18703013 | Msa1095680:CDS |
GTGTCTACCACCATCCTTCT+CGG | 0.435405 | 7_3:-18702958 | Msa1095680:intron |
TTACAATAAGAAACATTGTA+AGG | 0.437196 | 7_3:-18702542 | Msa1095680:CDS |
CCAAGGCTTCTTCCTTAAAG+TGG | 0.451553 | 7_3:+18702577 | None:intergenic |
CCACTTTAAGGAAGAAGCCT+TGG | 0.472640 | 7_3:-18702577 | Msa1095680:CDS |
TACATAGATAATACTAATGA+TGG | 0.480788 | 7_3:-18703030 | Msa1095680:intron |
GTATCTGATGGTGGTTTCAA+TGG | 0.489751 | 7_3:-18702628 | Msa1095680:CDS |
TGTAAAACGTCTTTCTTCCA+AGG | 0.493557 | 7_3:+18702560 | None:intergenic |
GTTCCAATAGAAGACACTAA+TGG | 0.519961 | 7_3:-18702657 | Msa1095680:CDS |
CAAGGCTTCTTCCTTAAAGT+GGG | 0.522231 | 7_3:+18702578 | None:intergenic |
TAAATCAAATTATACCGAGA+AGG | 0.524272 | 7_3:+18702944 | None:intergenic |
TGAATGCATGTGTTCGGGAC+TGG | 0.528106 | 7_3:-18703212 | Msa1095680:CDS |
AATACTAATGATGGCGCTCA+AGG | 0.547857 | 7_3:-18703021 | Msa1095680:CDS |
CAACTCAGCATTATATGTAG+TGG | 0.561364 | 7_3:-18702440 | None:intergenic |
TCAAATTATACCGAGAAGGA+TGG | 0.573375 | 7_3:+18702948 | None:intergenic |
TGTGACATTGTCAATGCCAC+TGG | 0.579217 | 7_3:+18702467 | None:intergenic |
TGGCCACTGGTATCTGATGG+TGG | 0.602522 | 7_3:-18702637 | Msa1095680:CDS |
TAGAAGACACTAATGGCCAC+TGG | 0.621867 | 7_3:-18702650 | Msa1095680:CDS |
AATTATACCGAGAAGGATGG+TGG | 0.650578 | 7_3:+18702951 | None:intergenic |
GTGACATTGTCAATGCCACT+GGG | 0.652854 | 7_3:+18702468 | None:intergenic |
TAATGGCCACTGGTATCTGA+TGG | 0.658056 | 7_3:-18702640 | Msa1095680:CDS |
TTTATAGTTGGGTATCCCAG+TGG | 0.659756 | 7_3:-18702483 | Msa1095680:CDS |
GGGACTGGTAGTGTCTAGAG+AGG | 0.699395 | 7_3:-18703197 | Msa1095680:intron |
AAACCACCATCAGATACCAG+TGG | 0.728616 | 7_3:+18702634 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGTTTTATGGTTATATTAT+AGG | - | chr7_3:18702495-18702514 | Msa1095680:CDS | 15.0% |
!!! | AGTTTTATGGTTATATTATA+GGG | - | chr7_3:18702496-18702515 | Msa1095680:CDS | 15.0% |
!!! | TGATTTATGTTTAAAACATA+GGG | + | chr7_3:18702692-18702711 | None:intergenic | 15.0% |
!!! | TTGATTTATGTTTAAAACAT+AGG | + | chr7_3:18702693-18702712 | None:intergenic | 15.0% |
!! | TTGATTTAAAAACAGTTTAA+AGG | - | chr7_3:18702848-18702867 | Msa1095680:intron | 15.0% |
!!! | TACTACTGATTATTTAATAA+AGG | - | chr7_3:18702910-18702929 | Msa1095680:intron | 15.0% |
!!! | AAGTTTTATGGTTATATTAT+AGG | - | chr7_3:18702495-18702514 | Msa1095680:CDS | 15.0% |
!!! | AGTTTTATGGTTATATTATA+GGG | - | chr7_3:18702496-18702515 | Msa1095680:CDS | 15.0% |
!!! | TGATTTATGTTTAAAACATA+GGG | + | chr7_3:18702692-18702711 | None:intergenic | 15.0% |
!!! | TTGATTTATGTTTAAAACAT+AGG | + | chr7_3:18702693-18702712 | None:intergenic | 15.0% |
!! | TTGATTTAAAAACAGTTTAA+AGG | - | chr7_3:18702848-18702867 | Msa1095680:intron | 15.0% |
!!! | TACTACTGATTATTTAATAA+AGG | - | chr7_3:18702910-18702929 | Msa1095680:intron | 15.0% |
!!! | GTTATATAACACAAGTTTTA+TGG | - | chr7_3:18702483-18702502 | Msa1095680:CDS | 20.0% |
!! | TACATAGATAATACTAATGA+TGG | - | chr7_3:18702747-18702766 | Msa1095680:intron | 20.0% |
!! | GAATAAATATGAAAAACAAG+TGG | + | chr7_3:18703048-18703067 | None:intergenic | 20.0% |
!! | TTACAATAAGAAACATTGTA+AGG | - | chr7_3:18703235-18703254 | Msa1095680:CDS | 20.0% |
!!! | ATTACAAAACCTTTTATAGT+TGG | - | chr7_3:18703282-18703301 | Msa1095680:CDS | 20.0% |
!!! | TTACAAAACCTTTTATAGTT+GGG | - | chr7_3:18703283-18703302 | Msa1095680:CDS | 20.0% |
!!! | GTTATATAACACAAGTTTTA+TGG | - | chr7_3:18702483-18702502 | Msa1095680:CDS | 20.0% |
!! | TACATAGATAATACTAATGA+TGG | - | chr7_3:18702747-18702766 | Msa1095680:intron | 20.0% |
!! | GAATAAATATGAAAAACAAG+TGG | + | chr7_3:18703048-18703067 | None:intergenic | 20.0% |
!! | TTACAATAAGAAACATTGTA+AGG | - | chr7_3:18703235-18703254 | Msa1095680:CDS | 20.0% |
!!! | ATTACAAAACCTTTTATAGT+TGG | - | chr7_3:18703282-18703301 | Msa1095680:CDS | 20.0% |
!!! | TTACAAAACCTTTTATAGTT+GGG | - | chr7_3:18703283-18703302 | Msa1095680:CDS | 20.0% |
! | AAGCCATAAATCAACTAATA+TGG | - | chr7_3:18702711-18702730 | Msa1095680:intron | 25.0% |
!! | ACTCCATATTAGTTGATTTA+TGG | + | chr7_3:18702717-18702736 | None:intergenic | 25.0% |
! | TAAATCAAATTATACCGAGA+AGG | + | chr7_3:18702836-18702855 | None:intergenic | 25.0% |
!! | GTCTAAATGGTAAATCTTTT+GGG | + | chr7_3:18703178-18703197 | None:intergenic | 25.0% |
!! | AGTCTAAATGGTAAATCTTT+TGG | + | chr7_3:18703179-18703198 | None:intergenic | 25.0% |
! | AAGCCATAAATCAACTAATA+TGG | - | chr7_3:18702711-18702730 | Msa1095680:intron | 25.0% |
!! | ACTCCATATTAGTTGATTTA+TGG | + | chr7_3:18702717-18702736 | None:intergenic | 25.0% |
! | TAAATCAAATTATACCGAGA+AGG | + | chr7_3:18702836-18702855 | None:intergenic | 25.0% |
!! | GTCTAAATGGTAAATCTTTT+GGG | + | chr7_3:18703178-18703197 | None:intergenic | 25.0% |
!! | AGTCTAAATGGTAAATCTTT+TGG | + | chr7_3:18703179-18703198 | None:intergenic | 25.0% |
! | TTATCGTTCTCATGCTTTTA+TGG | - | chr7_3:18702461-18702480 | Msa1095680:CDS | 30.0% |
! | ATACCATTTTCAAAGTTGAG+AGG | - | chr7_3:18702519-18702538 | Msa1095680:CDS | 30.0% |
! | TGATTTTGAATGCATGTGTT+CGG | - | chr7_3:18702559-18702578 | Msa1095680:CDS | 30.0% |
! | GCTTATGTTTTCTTCATGAA+AGG | - | chr7_3:18702656-18702675 | Msa1095680:CDS | 30.0% |
! | ACAACATTTGCAAGTTTTTG+TGG | - | chr7_3:18702797-18702816 | Msa1095680:intron | 30.0% |
! | TGGTAATGTTAAAACTCACA+TGG | - | chr7_3:18703010-18703029 | Msa1095680:CDS | 30.0% |
! | TTATCGTTCTCATGCTTTTA+TGG | - | chr7_3:18702461-18702480 | Msa1095680:CDS | 30.0% |
! | ATACCATTTTCAAAGTTGAG+AGG | - | chr7_3:18702519-18702538 | Msa1095680:CDS | 30.0% |
! | TGATTTTGAATGCATGTGTT+CGG | - | chr7_3:18702559-18702578 | Msa1095680:CDS | 30.0% |
! | GCTTATGTTTTCTTCATGAA+AGG | - | chr7_3:18702656-18702675 | Msa1095680:CDS | 30.0% |
! | ACAACATTTGCAAGTTTTTG+TGG | - | chr7_3:18702797-18702816 | Msa1095680:intron | 30.0% |
! | TGGTAATGTTAAAACTCACA+TGG | - | chr7_3:18703010-18703029 | Msa1095680:CDS | 30.0% |
! | GTTCCTCTCAACTTTGAAAA+TGG | + | chr7_3:18702525-18702544 | None:intergenic | 35.0% |
! | GATTTTGAATGCATGTGTTC+GGG | - | chr7_3:18702560-18702579 | Msa1095680:CDS | 35.0% |
TCTTCATGAAAGGTTTACTG+TGG | - | chr7_3:18702666-18702685 | Msa1095680:CDS | 35.0% | |
TCAAATTATACCGAGAAGGA+TGG | + | chr7_3:18702832-18702851 | None:intergenic | 35.0% | |
!! | ATAAAGGTTGATGTTGCTAG+AGG | - | chr7_3:18702926-18702945 | Msa1095680:intron | 35.0% |
GATTACCCTTTGATCGATTA+AGG | - | chr7_3:18702986-18703005 | Msa1095680:CDS | 35.0% | |
GTTCCAATAGAAGACACTAA+TGG | - | chr7_3:18703120-18703139 | Msa1095680:intron | 35.0% | |
TGTAAAACGTCTTTCTTCCA+AGG | + | chr7_3:18703220-18703239 | None:intergenic | 35.0% | |
! | GTTCCTCTCAACTTTGAAAA+TGG | + | chr7_3:18702525-18702544 | None:intergenic | 35.0% |
! | GATTTTGAATGCATGTGTTC+GGG | - | chr7_3:18702560-18702579 | Msa1095680:CDS | 35.0% |
TCTTCATGAAAGGTTTACTG+TGG | - | chr7_3:18702666-18702685 | Msa1095680:CDS | 35.0% | |
TCAAATTATACCGAGAAGGA+TGG | + | chr7_3:18702832-18702851 | None:intergenic | 35.0% | |
!! | ATAAAGGTTGATGTTGCTAG+AGG | - | chr7_3:18702926-18702945 | Msa1095680:intron | 35.0% |
GATTACCCTTTGATCGATTA+AGG | - | chr7_3:18702986-18703005 | Msa1095680:CDS | 35.0% | |
GTTCCAATAGAAGACACTAA+TGG | - | chr7_3:18703120-18703139 | Msa1095680:intron | 35.0% | |
TGTAAAACGTCTTTCTTCCA+AGG | + | chr7_3:18703220-18703239 | None:intergenic | 35.0% | |
! | AATACTAATGATGGCGCTCA+AGG | - | chr7_3:18702756-18702775 | Msa1095680:intron | 40.0% |
AATTATACCGAGAAGGATGG+TGG | + | chr7_3:18702829-18702848 | None:intergenic | 40.0% | |
! | AGGCTTTGCATGCGTTTTAT+GGG | - | chr7_3:18702960-18702979 | Msa1095680:CDS | 40.0% |
ACCAGCCTTAATCGATCAAA+GGG | + | chr7_3:18702994-18703013 | None:intergenic | 40.0% | |
TACCAGCCTTAATCGATCAA+AGG | + | chr7_3:18702995-18703014 | None:intergenic | 40.0% | |
TGGCCATTAGTGTCTTCTAT+TGG | + | chr7_3:18703126-18703145 | None:intergenic | 40.0% | |
!! | GTATCTGATGGTGGTTTCAA+TGG | - | chr7_3:18703149-18703168 | Msa1095680:intron | 40.0% |
CCTTAAAGTGGGAGTCTAAA+TGG | + | chr7_3:18703191-18703210 | None:intergenic | 40.0% | |
CCATTTAGACTCCCACTTTA+AGG | - | chr7_3:18703188-18703207 | Msa1095680:intron | 40.0% | |
CAAGGCTTCTTCCTTAAAGT+GGG | + | chr7_3:18703202-18703221 | None:intergenic | 40.0% | |
CTGGGATACCCAACTATAAA+AGG | + | chr7_3:18703294-18703313 | None:intergenic | 40.0% | |
TTTATAGTTGGGTATCCCAG+TGG | - | chr7_3:18703294-18703313 | Msa1095680:CDS | 40.0% | |
! | AATACTAATGATGGCGCTCA+AGG | - | chr7_3:18702756-18702775 | Msa1095680:intron | 40.0% |
AATTATACCGAGAAGGATGG+TGG | + | chr7_3:18702829-18702848 | None:intergenic | 40.0% | |
! | AGGCTTTGCATGCGTTTTAT+GGG | - | chr7_3:18702960-18702979 | Msa1095680:CDS | 40.0% |
ACCAGCCTTAATCGATCAAA+GGG | + | chr7_3:18702994-18703013 | None:intergenic | 40.0% | |
TACCAGCCTTAATCGATCAA+AGG | + | chr7_3:18702995-18703014 | None:intergenic | 40.0% | |
TGGCCATTAGTGTCTTCTAT+TGG | + | chr7_3:18703126-18703145 | None:intergenic | 40.0% | |
!! | GTATCTGATGGTGGTTTCAA+TGG | - | chr7_3:18703149-18703168 | Msa1095680:intron | 40.0% |
CCTTAAAGTGGGAGTCTAAA+TGG | + | chr7_3:18703191-18703210 | None:intergenic | 40.0% | |
CCATTTAGACTCCCACTTTA+AGG | - | chr7_3:18703188-18703207 | Msa1095680:intron | 40.0% | |
CAAGGCTTCTTCCTTAAAGT+GGG | + | chr7_3:18703202-18703221 | None:intergenic | 40.0% | |
CTGGGATACCCAACTATAAA+AGG | + | chr7_3:18703294-18703313 | None:intergenic | 40.0% | |
TTTATAGTTGGGTATCCCAG+TGG | - | chr7_3:18703294-18703313 | Msa1095680:CDS | 40.0% | |
TAAAACGCATGCAAAGCCTC+TGG | + | chr7_3:18702959-18702978 | None:intergenic | 45.0% | |
! | GAGGCTTTGCATGCGTTTTA+TGG | - | chr7_3:18702959-18702978 | Msa1095680:CDS | 45.0% |
ACCCTTTGATCGATTAAGGC+TGG | - | chr7_3:18702990-18703009 | Msa1095680:CDS | 45.0% | |
TAGAAGACACTAATGGCCAC+TGG | - | chr7_3:18703127-18703146 | Msa1095680:intron | 45.0% | |
TAATGGCCACTGGTATCTGA+TGG | - | chr7_3:18703137-18703156 | Msa1095680:intron | 45.0% | |
AAACCACCATCAGATACCAG+TGG | + | chr7_3:18703146-18703165 | None:intergenic | 45.0% | |
CCAAGGCTTCTTCCTTAAAG+TGG | + | chr7_3:18703203-18703222 | None:intergenic | 45.0% | |
! | CCACTTTAAGGAAGAAGCCT+TGG | - | chr7_3:18703200-18703219 | Msa1095680:CDS | 45.0% |
GTGACATTGTCAATGCCACT+GGG | + | chr7_3:18703312-18703331 | None:intergenic | 45.0% | |
TGTGACATTGTCAATGCCAC+TGG | + | chr7_3:18703313-18703332 | None:intergenic | 45.0% | |
TAAAACGCATGCAAAGCCTC+TGG | + | chr7_3:18702959-18702978 | None:intergenic | 45.0% | |
! | GAGGCTTTGCATGCGTTTTA+TGG | - | chr7_3:18702959-18702978 | Msa1095680:CDS | 45.0% |
ACCCTTTGATCGATTAAGGC+TGG | - | chr7_3:18702990-18703009 | Msa1095680:CDS | 45.0% | |
TAGAAGACACTAATGGCCAC+TGG | - | chr7_3:18703127-18703146 | Msa1095680:intron | 45.0% | |
TAATGGCCACTGGTATCTGA+TGG | - | chr7_3:18703137-18703156 | Msa1095680:intron | 45.0% | |
AAACCACCATCAGATACCAG+TGG | + | chr7_3:18703146-18703165 | None:intergenic | 45.0% | |
CCAAGGCTTCTTCCTTAAAG+TGG | + | chr7_3:18703203-18703222 | None:intergenic | 45.0% | |
! | CCACTTTAAGGAAGAAGCCT+TGG | - | chr7_3:18703200-18703219 | Msa1095680:CDS | 45.0% |
GTGACATTGTCAATGCCACT+GGG | + | chr7_3:18703312-18703331 | None:intergenic | 45.0% | |
TGTGACATTGTCAATGCCAC+TGG | + | chr7_3:18703313-18703332 | None:intergenic | 45.0% | |
TGAATGCATGTGTTCGGGAC+TGG | - | chr7_3:18702565-18702584 | Msa1095680:CDS | 50.0% | |
! | TGATGGCGCTCAAGGTATCT+TGG | - | chr7_3:18702764-18702783 | Msa1095680:intron | 50.0% |
GTGTCTACCACCATCCTTCT+CGG | - | chr7_3:18702819-18702838 | Msa1095680:intron | 50.0% | |
TGCTAGAGGTTCAACTCCAG+AGG | - | chr7_3:18702940-18702959 | Msa1095680:intron | 50.0% | |
TGAATGCATGTGTTCGGGAC+TGG | - | chr7_3:18702565-18702584 | Msa1095680:CDS | 50.0% | |
! | TGATGGCGCTCAAGGTATCT+TGG | - | chr7_3:18702764-18702783 | Msa1095680:intron | 50.0% |
GTGTCTACCACCATCCTTCT+CGG | - | chr7_3:18702819-18702838 | Msa1095680:intron | 50.0% | |
TGCTAGAGGTTCAACTCCAG+AGG | - | chr7_3:18702940-18702959 | Msa1095680:intron | 50.0% | |
! | GGGACTGGTAGTGTCTAGAG+AGG | - | chr7_3:18702580-18702599 | Msa1095680:CDS | 55.0% |
TGGCCACTGGTATCTGATGG+TGG | - | chr7_3:18703140-18703159 | Msa1095680:intron | 55.0% | |
! | GGGACTGGTAGTGTCTAGAG+AGG | - | chr7_3:18702580-18702599 | Msa1095680:CDS | 55.0% |
TGGCCACTGGTATCTGATGG+TGG | - | chr7_3:18703140-18703159 | Msa1095680:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 18702443 | 18703356 | 18702443 | ID=Msa1095680;Name=Msa1095680 |
chr7_3 | mRNA | 18702443 | 18703356 | 18702443 | ID=Msa1095680-mRNA-1;Parent=Msa1095680;Name=Msa1095680-mRNA-1;_AED=0.39;_eAED=0.53;_QI=0|0|0|1|0|0.66|3|0|162 |
chr7_3 | exon | 18703198 | 18703356 | 18703198 | ID=Msa1095680-mRNA-1:exon:4089;Parent=Msa1095680-mRNA-1 |
chr7_3 | exon | 18702959 | 18703045 | 18702959 | ID=Msa1095680-mRNA-1:exon:4088;Parent=Msa1095680-mRNA-1 |
chr7_3 | exon | 18702443 | 18702685 | 18702443 | ID=Msa1095680-mRNA-1:exon:4087;Parent=Msa1095680-mRNA-1 |
chr7_3 | CDS | 18703198 | 18703356 | 18703198 | ID=Msa1095680-mRNA-1:cds;Parent=Msa1095680-mRNA-1 |
chr7_3 | CDS | 18702959 | 18703045 | 18702959 | ID=Msa1095680-mRNA-1:cds;Parent=Msa1095680-mRNA-1 |
chr7_3 | CDS | 18702443 | 18702685 | 18702443 | ID=Msa1095680-mRNA-1:cds;Parent=Msa1095680-mRNA-1 |
Gene Sequence |
Protein sequence |