Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143100 | AWW91873.1 | 98.842 | 259 | 3 | 0 | 1 | 259 | 1 | 259 | 9.75e-177 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143100 | sp|Q9BBS9|RPOB_LOTJA | 94.094 | 254 | 15 | 0 | 6 | 259 | 1 | 254 | 1.86e-168 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143100 | A0A2Z4KH34 | 98.842 | 259 | 3 | 0 | 1 | 259 | 1 | 259 | 4.66e-177 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139790 | Msa1143100 | 0.800756 | 1.241286e-48 | -8.615850e-47 |
| Msa1143100 | Msa1355120 | 0.804588 | 2.010127e-49 | -8.615850e-47 |
| Msa0484000 | Msa1143100 | 0.821999 | 2.995631e-53 | -8.615850e-47 |
| Msa0582500 | Msa1143100 | 0.816463 | 5.459488e-52 | -8.615850e-47 |
| Msa0582680 | Msa1143100 | 0.825892 | 3.657954e-54 | -8.615850e-47 |
| Msa0582800 | Msa1143100 | 0.835211 | 1.915181e-56 | -8.615850e-47 |
| Msa0931050 | Msa1143100 | 0.864390 | 1.258602e-64 | -8.615850e-47 |
| Msa0931120 | Msa1143100 | 0.804734 | 1.874048e-49 | -8.615850e-47 |
| Msa0931250 | Msa1143100 | 0.810823 | 9.517543e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143100 | MtrunA17_Chr4g0016641 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 8.06e-179 | 520 |
| Msa1143100 | MtrunA17_CPg0493041 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 8.06e-179 | 520 |
| Msa1143100 | MtrunA17_Chr4g0015521 | 98.165 | 109 | 2 | 0 | 112 | 220 | 1 | 109 | 2.12e-72 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143100 | ATCG00190.1 | 86.220 | 254 | 35 | 0 | 6 | 259 | 1 | 254 | 5.09e-151 | 449 |
Find 53 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATCCGCGGGATTAATT+TGG | 0.209384 | 7_4:+18323739 | Msa1143100:CDS |
| TTTCAACAAAGATGTGAATT+AGG | 0.219138 | 7_4:+18324250 | Msa1143100:CDS |
| CTGGGAACTTCTATAGTAAA+TGG | 0.231551 | 7_4:+18323825 | Msa1143100:CDS |
| ACATAAAGATTCAGGAAATA+TGG | 0.234879 | 7_4:-18324207 | None:intergenic |
| GTCAAAAGAAAATGCCATTT+TGG | 0.238441 | 7_4:+18324148 | Msa1143100:CDS |
| TTGATAGAAAAGCAAGGATA+TGG | 0.252693 | 7_4:+18323982 | Msa1143100:CDS |
| AATTCCGTACATAAAGATTC+AGG | 0.323867 | 7_4:-18324215 | None:intergenic |
| AAATTGTATTTGATTTAATC+CGG | 0.349804 | 7_4:-18323535 | None:intergenic |
| TTGTCGATAAAACTCCAAAA+TGG | 0.374690 | 7_4:-18324162 | None:intergenic |
| TGGGGAAATTGAAAATGCTT+GGG | 0.386996 | 7_4:+18323484 | Msa1143100:CDS |
| AATTGAAAATGCTTGGGGTT+GGG | 0.394420 | 7_4:+18323490 | Msa1143100:CDS |
| CATTCCTCTAATGAATTCCC+TGG | 0.423604 | 7_4:+18323806 | Msa1143100:CDS |
| ATGGGGAAATTGAAAATGCT+TGG | 0.425882 | 7_4:+18323483 | Msa1143100:CDS |
| TATGTCTTTCCTCAATGAAA+AGG | 0.429238 | 7_4:+18324109 | Msa1143100:CDS |
| ATGCTTGGGGTTGGGAATGA+AGG | 0.438598 | 7_4:+18323498 | Msa1143100:CDS |
| TGGCACAATAATATCCGATT+GGG | 0.439186 | 7_4:+18323938 | Msa1143100:CDS |
| CATAAAGATTCAGGAAATAT+GGG | 0.442441 | 7_4:-18324206 | None:intergenic |
| AATTGAATTTCAGTTATTTG+TGG | 0.443334 | 7_4:+18323638 | Msa1143100:CDS |
| GTTCCCAGGGAATTCATTAG+AGG | 0.450312 | 7_4:-18323810 | None:intergenic |
| AACGGAATTTCAGTCTATAC+TGG | 0.455189 | 7_4:+18323918 | Msa1143100:CDS |
| AAATTGAAAATGCTTGGGGT+TGG | 0.457271 | 7_4:+18323489 | Msa1143100:CDS |
| TTAAATCAAATACAATTTGA+AGG | 0.460401 | 7_4:+18323540 | Msa1143100:CDS |
| ATTTGTGGAAACATATCAAT+TGG | 0.470517 | 7_4:+18323653 | Msa1143100:CDS |
| CATTTACTATAGAAGTTCCC+AGG | 0.473812 | 7_4:-18323824 | None:intergenic |
| TCTAGTTCTATCATCAGCTA+TGG | 0.479428 | 7_4:+18324037 | Msa1143100:CDS |
| TATAGACTGAAATTCCGTTA+TGG | 0.489213 | 7_4:-18323914 | None:intergenic |
| CGTTCAGAGTTGGACCATAA+CGG | 0.495197 | 7_4:+18323900 | Msa1143100:CDS |
| ATTTCCTGAATCTTTATGTA+CGG | 0.495836 | 7_4:+18324211 | Msa1143100:CDS |
| TATCTATTATCGTTCAGAGT+TGG | 0.510246 | 7_4:+18323890 | Msa1143100:CDS |
| CTGGCACAATAATATCCGAT+TGG | 0.523488 | 7_4:+18323937 | Msa1143100:CDS |
| TGATAGAAAAGCAAGGATAT+GGG | 0.526528 | 7_4:+18323983 | Msa1143100:CDS |
| CGACAATTTGCTTGTGTAGG+CGG | 0.527978 | 7_4:+18324179 | Msa1143100:CDS |
| CTAGTTCTATCATCAGCTAT+GGG | 0.528023 | 7_4:+18324038 | Msa1143100:CDS |
| TAAATCAAATACAATTTGAA+GGG | 0.532005 | 7_4:+18323541 | Msa1143100:CDS |
| GGATATGGGCTCGTGTAAGT+AGG | 0.539731 | 7_4:+18323997 | Msa1143100:CDS |
| TAGAAATTGATAGAAAAGCA+AGG | 0.548786 | 7_4:+18323976 | Msa1143100:CDS |
| AATTGTATTTGATTTAATCC+GGG | 0.549785 | 7_4:-18323534 | None:intergenic |
| TATCGACAATTTGCTTGTGT+AGG | 0.554239 | 7_4:+18324176 | Msa1143100:CDS |
| TCTGAATTATATATATCCGC+GGG | 0.562320 | 7_4:+18323729 | Msa1143100:CDS |
| AATCAAATATTGCAAAGCCC+TGG | 0.569397 | 7_4:+18323867 | Msa1143100:CDS |
| CACAATAATATCCGATTGGG+GGG | 0.571960 | 7_4:+18323941 | Msa1143100:CDS |
| CTCTGAATTATATATATCCG+CGG | 0.577667 | 7_4:+18323728 | Msa1143100:CDS |
| GTCTTTCCTCAATGAAAAGG+AGG | 0.586724 | 7_4:+18324112 | Msa1143100:CDS |
| CGCGGATATATATAATTCAG+AGG | 0.586801 | 7_4:-18323727 | None:intergenic |
| ATTTACTATAGAAGTTCCCA+GGG | 0.587463 | 7_4:-18323823 | None:intergenic |
| TCTGAACGATAATAGATACC+AGG | 0.589979 | 7_4:-18323885 | None:intergenic |
| ATTCCTCTAATGAATTCCCT+GGG | 0.606971 | 7_4:+18323807 | Msa1143100:CDS |
| GGCACAATAATATCCGATTG+GGG | 0.627268 | 7_4:+18323939 | Msa1143100:CDS |
| GAAGGAATGTCTACACTACC+CGG | 0.627870 | 7_4:+18323516 | Msa1143100:CDS |
| ACAATAATATCCGATTGGGG+GGG | 0.637953 | 7_4:+18323942 | Msa1143100:CDS |
| CTGAACGATAATAGATACCA+GGG | 0.641198 | 7_4:-18323884 | None:intergenic |
| GGGGAAATTGAAAATGCTTG+GGG | 0.643696 | 7_4:+18323485 | Msa1143100:CDS |
| GCACAATAATATCCGATTGG+GGG | 0.683666 | 7_4:+18323940 | Msa1143100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGTATTTGATTTAATC+CGG | - | chr7_4:18323538-18323557 | None:intergenic | 15.0% |
| !! | TTAAATCAAATACAATTTGA+AGG | + | chr7_4:18323540-18323559 | Msa1143100:CDS | 15.0% |
| !! | TAAATCAAATACAATTTGAA+GGG | + | chr7_4:18323541-18323560 | Msa1143100:CDS | 15.0% |
| !!! | CAATAAAAATAATTTGTTCT+TGG | - | chr7_4:18323782-18323801 | None:intergenic | 15.0% |
| !!! | CAAGAACAAATTATTTTTAT+TGG | + | chr7_4:18323780-18323799 | Msa1143100:CDS | 15.0% |
| !!! | AAATTGTATTTGATTTAATC+CGG | - | chr7_4:18323538-18323557 | None:intergenic | 15.0% |
| !! | TTAAATCAAATACAATTTGA+AGG | + | chr7_4:18323540-18323559 | Msa1143100:CDS | 15.0% |
| !! | TAAATCAAATACAATTTGAA+GGG | + | chr7_4:18323541-18323560 | Msa1143100:CDS | 15.0% |
| !!! | CAATAAAAATAATTTGTTCT+TGG | - | chr7_4:18323782-18323801 | None:intergenic | 15.0% |
| !!! | CAAGAACAAATTATTTTTAT+TGG | + | chr7_4:18323780-18323799 | Msa1143100:CDS | 15.0% |
| !!! | AATTGTATTTGATTTAATCC+GGG | - | chr7_4:18323537-18323556 | None:intergenic | 20.0% |
| !! | AATTGAATTTCAGTTATTTG+TGG | + | chr7_4:18323638-18323657 | Msa1143100:CDS | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | + | chr7_4:18323752-18323771 | Msa1143100:CDS | 20.0% |
| !! | AAAAGGAGGAAAAAAAAATA+GGG | + | chr7_4:18324126-18324145 | Msa1143100:CDS | 20.0% |
| !!! | AATTGTATTTGATTTAATCC+GGG | - | chr7_4:18323537-18323556 | None:intergenic | 20.0% |
| !! | AATTGAATTTCAGTTATTTG+TGG | + | chr7_4:18323638-18323657 | Msa1143100:CDS | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | + | chr7_4:18323752-18323771 | Msa1143100:CDS | 20.0% |
| !! | AAAAGGAGGAAAAAAAAATA+GGG | + | chr7_4:18324126-18324145 | Msa1143100:CDS | 20.0% |
| ! | GTTTCCAAAAATTGAAGATA+CGG | + | chr7_4:18323608-18323627 | Msa1143100:CDS | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | + | chr7_4:18323653-18323672 | Msa1143100:CDS | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | + | chr7_4:18323751-18323770 | Msa1143100:CDS | 25.0% |
| ! | TAGAAATTGATAGAAAAGCA+AGG | + | chr7_4:18323976-18323995 | Msa1143100:CDS | 25.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | - | chr7_4:18324101-18324120 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | - | chr7_4:18324102-18324121 | None:intergenic | 25.0% |
| ! | GAAAAGGAGGAAAAAAAAAT+AGG | + | chr7_4:18324125-18324144 | Msa1143100:CDS | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | - | chr7_4:18324209-18324228 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | - | chr7_4:18324210-18324229 | None:intergenic | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | + | chr7_4:18324211-18324230 | Msa1143100:CDS | 25.0% |
| ! | GTTTCCAAAAATTGAAGATA+CGG | + | chr7_4:18323608-18323627 | Msa1143100:CDS | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | + | chr7_4:18323653-18323672 | Msa1143100:CDS | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | + | chr7_4:18323751-18323770 | Msa1143100:CDS | 25.0% |
| ! | TAGAAATTGATAGAAAAGCA+AGG | + | chr7_4:18323976-18323995 | Msa1143100:CDS | 25.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | - | chr7_4:18324101-18324120 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | - | chr7_4:18324102-18324121 | None:intergenic | 25.0% |
| ! | GAAAAGGAGGAAAAAAAAAT+AGG | + | chr7_4:18324125-18324144 | Msa1143100:CDS | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | - | chr7_4:18324209-18324228 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | - | chr7_4:18324210-18324229 | None:intergenic | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | + | chr7_4:18324211-18324230 | Msa1143100:CDS | 25.0% |
| !! | GGTTTTGTAGATTCATTGAT+CGG | + | chr7_4:18323562-18323581 | Msa1143100:CDS | 30.0% |
| ! | GTTTTGTAGATTCATTGATC+GGG | + | chr7_4:18323563-18323582 | Msa1143100:CDS | 30.0% |
| ! | TTTTGTAGATTCATTGATCG+GGG | + | chr7_4:18323564-18323583 | Msa1143100:CDS | 30.0% |
| ! | TGATCCGTATCTTCAATTTT+TGG | - | chr7_4:18323615-18323634 | None:intergenic | 30.0% |
| ! | GCATCTTTTTCTTTTATCGA+GGG | - | chr7_4:18323684-18323703 | None:intergenic | 30.0% |
| ! | AGCATCTTTTTCTTTTATCG+AGG | - | chr7_4:18323685-18323704 | None:intergenic | 30.0% |
| CTCTGAATTATATATATCCG+CGG | + | chr7_4:18323728-18323747 | Msa1143100:CDS | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | + | chr7_4:18323729-18323748 | Msa1143100:CDS | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | - | chr7_4:18323826-18323845 | None:intergenic | 30.0% | |
| TATCTATTATCGTTCAGAGT+TGG | + | chr7_4:18323890-18323909 | Msa1143100:CDS | 30.0% | |
| TATAGACTGAAATTCCGTTA+TGG | - | chr7_4:18323917-18323936 | None:intergenic | 30.0% | |
| TTGATAGAAAAGCAAGGATA+TGG | + | chr7_4:18323982-18324001 | Msa1143100:CDS | 30.0% | |
| TGATAGAAAAGCAAGGATAT+GGG | + | chr7_4:18323983-18324002 | Msa1143100:CDS | 30.0% | |
| GGAAAGACATAAAAATTTCG+GGG | - | chr7_4:18324100-18324119 | None:intergenic | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | + | chr7_4:18324109-18324128 | Msa1143100:CDS | 30.0% | |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | - | chr7_4:18324121-18324140 | None:intergenic | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | + | chr7_4:18324148-18324167 | Msa1143100:CDS | 30.0% |
| TTGTCGATAAAACTCCAAAA+TGG | - | chr7_4:18324165-18324184 | None:intergenic | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | - | chr7_4:18324218-18324237 | None:intergenic | 30.0% | |
| !! | GGTTTTGTAGATTCATTGAT+CGG | + | chr7_4:18323562-18323581 | Msa1143100:CDS | 30.0% |
| ! | GTTTTGTAGATTCATTGATC+GGG | + | chr7_4:18323563-18323582 | Msa1143100:CDS | 30.0% |
| ! | TTTTGTAGATTCATTGATCG+GGG | + | chr7_4:18323564-18323583 | Msa1143100:CDS | 30.0% |
| ! | TGATCCGTATCTTCAATTTT+TGG | - | chr7_4:18323615-18323634 | None:intergenic | 30.0% |
| ! | GCATCTTTTTCTTTTATCGA+GGG | - | chr7_4:18323684-18323703 | None:intergenic | 30.0% |
| ! | AGCATCTTTTTCTTTTATCG+AGG | - | chr7_4:18323685-18323704 | None:intergenic | 30.0% |
| CTCTGAATTATATATATCCG+CGG | + | chr7_4:18323728-18323747 | Msa1143100:CDS | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | + | chr7_4:18323729-18323748 | Msa1143100:CDS | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | - | chr7_4:18323826-18323845 | None:intergenic | 30.0% | |
| TATCTATTATCGTTCAGAGT+TGG | + | chr7_4:18323890-18323909 | Msa1143100:CDS | 30.0% | |
| TATAGACTGAAATTCCGTTA+TGG | - | chr7_4:18323917-18323936 | None:intergenic | 30.0% | |
| TTGATAGAAAAGCAAGGATA+TGG | + | chr7_4:18323982-18324001 | Msa1143100:CDS | 30.0% | |
| TGATAGAAAAGCAAGGATAT+GGG | + | chr7_4:18323983-18324002 | Msa1143100:CDS | 30.0% | |
| GGAAAGACATAAAAATTTCG+GGG | - | chr7_4:18324100-18324119 | None:intergenic | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | + | chr7_4:18324109-18324128 | Msa1143100:CDS | 30.0% | |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | - | chr7_4:18324121-18324140 | None:intergenic | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | + | chr7_4:18324148-18324167 | Msa1143100:CDS | 30.0% |
| TTGTCGATAAAACTCCAAAA+TGG | - | chr7_4:18324165-18324184 | None:intergenic | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | - | chr7_4:18324218-18324237 | None:intergenic | 30.0% | |
| ATGGGGAAATTGAAAATGCT+TGG | + | chr7_4:18323483-18323502 | Msa1143100:CDS | 35.0% | |
| TGGGGAAATTGAAAATGCTT+GGG | + | chr7_4:18323484-18323503 | Msa1143100:CDS | 35.0% | |
| AAATTGAAAATGCTTGGGGT+TGG | + | chr7_4:18323489-18323508 | Msa1143100:CDS | 35.0% | |
| AATTGAAAATGCTTGGGGTT+GGG | + | chr7_4:18323490-18323509 | Msa1143100:CDS | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | - | chr7_4:18323730-18323749 | None:intergenic | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | + | chr7_4:18323739-18323758 | Msa1143100:CDS | 35.0% | |
| ! | GTTTTTCCAAATTAATCCCG+CGG | - | chr7_4:18323748-18323767 | None:intergenic | 35.0% |
| ATTCCTCTAATGAATTCCCT+GGG | + | chr7_4:18323807-18323826 | Msa1143100:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | - | chr7_4:18323827-18323846 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | + | chr7_4:18323825-18323844 | Msa1143100:CDS | 35.0% | |
| AATCAAATATTGCAAAGCCC+TGG | + | chr7_4:18323867-18323886 | Msa1143100:CDS | 35.0% | |
| CTGAACGATAATAGATACCA+GGG | - | chr7_4:18323887-18323906 | None:intergenic | 35.0% | |
| TCTGAACGATAATAGATACC+AGG | - | chr7_4:18323888-18323907 | None:intergenic | 35.0% | |
| AACGGAATTTCAGTCTATAC+TGG | + | chr7_4:18323918-18323937 | Msa1143100:CDS | 35.0% | |
| TGGCACAATAATATCCGATT+GGG | + | chr7_4:18323938-18323957 | Msa1143100:CDS | 35.0% | |
| !! | TCTAGTTCTATCATCAGCTA+TGG | + | chr7_4:18324037-18324056 | Msa1143100:CDS | 35.0% |
| !! | CTAGTTCTATCATCAGCTAT+GGG | + | chr7_4:18324038-18324057 | Msa1143100:CDS | 35.0% |
| ! | TATCGACAATTTGCTTGTGT+AGG | + | chr7_4:18324176-18324195 | Msa1143100:CDS | 35.0% |
| ATGGGGAAATTGAAAATGCT+TGG | + | chr7_4:18323483-18323502 | Msa1143100:CDS | 35.0% | |
| TGGGGAAATTGAAAATGCTT+GGG | + | chr7_4:18323484-18323503 | Msa1143100:CDS | 35.0% | |
| AAATTGAAAATGCTTGGGGT+TGG | + | chr7_4:18323489-18323508 | Msa1143100:CDS | 35.0% | |
| AATTGAAAATGCTTGGGGTT+GGG | + | chr7_4:18323490-18323509 | Msa1143100:CDS | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | - | chr7_4:18323730-18323749 | None:intergenic | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | + | chr7_4:18323739-18323758 | Msa1143100:CDS | 35.0% | |
| ! | GTTTTTCCAAATTAATCCCG+CGG | - | chr7_4:18323748-18323767 | None:intergenic | 35.0% |
| ATTCCTCTAATGAATTCCCT+GGG | + | chr7_4:18323807-18323826 | Msa1143100:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | - | chr7_4:18323827-18323846 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | + | chr7_4:18323825-18323844 | Msa1143100:CDS | 35.0% | |
| AATCAAATATTGCAAAGCCC+TGG | + | chr7_4:18323867-18323886 | Msa1143100:CDS | 35.0% | |
| CTGAACGATAATAGATACCA+GGG | - | chr7_4:18323887-18323906 | None:intergenic | 35.0% | |
| TCTGAACGATAATAGATACC+AGG | - | chr7_4:18323888-18323907 | None:intergenic | 35.0% | |
| AACGGAATTTCAGTCTATAC+TGG | + | chr7_4:18323918-18323937 | Msa1143100:CDS | 35.0% | |
| TGGCACAATAATATCCGATT+GGG | + | chr7_4:18323938-18323957 | Msa1143100:CDS | 35.0% | |
| !! | TCTAGTTCTATCATCAGCTA+TGG | + | chr7_4:18324037-18324056 | Msa1143100:CDS | 35.0% |
| !! | CTAGTTCTATCATCAGCTAT+GGG | + | chr7_4:18324038-18324057 | Msa1143100:CDS | 35.0% |
| ! | TATCGACAATTTGCTTGTGT+AGG | + | chr7_4:18324176-18324195 | Msa1143100:CDS | 35.0% |
| GGGGAAATTGAAAATGCTTG+GGG | + | chr7_4:18323485-18323504 | Msa1143100:CDS | 40.0% | |
| CATTCCTCTAATGAATTCCC+TGG | + | chr7_4:18323806-18323825 | Msa1143100:CDS | 40.0% | |
| CTGGCACAATAATATCCGAT+TGG | + | chr7_4:18323937-18323956 | Msa1143100:CDS | 40.0% | |
| GGCACAATAATATCCGATTG+GGG | + | chr7_4:18323939-18323958 | Msa1143100:CDS | 40.0% | |
| GCACAATAATATCCGATTGG+GGG | + | chr7_4:18323940-18323959 | Msa1143100:CDS | 40.0% | |
| CACAATAATATCCGATTGGG+GGG | + | chr7_4:18323941-18323960 | Msa1143100:CDS | 40.0% | |
| ACAATAATATCCGATTGGGG+GGG | + | chr7_4:18323942-18323961 | Msa1143100:CDS | 40.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | + | chr7_4:18324112-18324131 | Msa1143100:CDS | 40.0% | |
| GGGGAAATTGAAAATGCTTG+GGG | + | chr7_4:18323485-18323504 | Msa1143100:CDS | 40.0% | |
| CATTCCTCTAATGAATTCCC+TGG | + | chr7_4:18323806-18323825 | Msa1143100:CDS | 40.0% | |
| CTGGCACAATAATATCCGAT+TGG | + | chr7_4:18323937-18323956 | Msa1143100:CDS | 40.0% | |
| GGCACAATAATATCCGATTG+GGG | + | chr7_4:18323939-18323958 | Msa1143100:CDS | 40.0% | |
| GCACAATAATATCCGATTGG+GGG | + | chr7_4:18323940-18323959 | Msa1143100:CDS | 40.0% | |
| CACAATAATATCCGATTGGG+GGG | + | chr7_4:18323941-18323960 | Msa1143100:CDS | 40.0% | |
| ACAATAATATCCGATTGGGG+GGG | + | chr7_4:18323942-18323961 | Msa1143100:CDS | 40.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | + | chr7_4:18324112-18324131 | Msa1143100:CDS | 40.0% | |
| GAAGGAATGTCTACACTACC+CGG | + | chr7_4:18323516-18323535 | Msa1143100:CDS | 45.0% | |
| GTTCCCAGGGAATTCATTAG+AGG | - | chr7_4:18323813-18323832 | None:intergenic | 45.0% | |
| CGTTCAGAGTTGGACCATAA+CGG | + | chr7_4:18323900-18323919 | Msa1143100:CDS | 45.0% | |
| ! | CGACAATTTGCTTGTGTAGG+CGG | + | chr7_4:18324179-18324198 | Msa1143100:CDS | 45.0% |
| GAAGGAATGTCTACACTACC+CGG | + | chr7_4:18323516-18323535 | Msa1143100:CDS | 45.0% | |
| GTTCCCAGGGAATTCATTAG+AGG | - | chr7_4:18323813-18323832 | None:intergenic | 45.0% | |
| CGTTCAGAGTTGGACCATAA+CGG | + | chr7_4:18323900-18323919 | Msa1143100:CDS | 45.0% | |
| ! | CGACAATTTGCTTGTGTAGG+CGG | + | chr7_4:18324179-18324198 | Msa1143100:CDS | 45.0% |
| ATGCTTGGGGTTGGGAATGA+AGG | + | chr7_4:18323498-18323517 | Msa1143100:CDS | 50.0% | |
| CTCTAATCTTCCCCCCCAAT+CGG | - | chr7_4:18323955-18323974 | None:intergenic | 50.0% | |
| GGATATGGGCTCGTGTAAGT+AGG | + | chr7_4:18323997-18324016 | Msa1143100:CDS | 50.0% | |
| ATGCTTGGGGTTGGGAATGA+AGG | + | chr7_4:18323498-18323517 | Msa1143100:CDS | 50.0% | |
| CTCTAATCTTCCCCCCCAAT+CGG | - | chr7_4:18323955-18323974 | None:intergenic | 50.0% | |
| GGATATGGGCTCGTGTAAGT+AGG | + | chr7_4:18323997-18324016 | Msa1143100:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 18323483 | 18324271 | 18323483 | ID=Msa1143100;Name=Msa1143100 |
| chr7_4 | mRNA | 18323483 | 18324271 | 18323483 | ID=Msa1143100-mRNA-1;Parent=Msa1143100;Name=Msa1143100-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|262 |
| chr7_4 | exon | 18323483 | 18324271 | 18323483 | ID=Msa1143100-mRNA-1:exon:4074;Parent=Msa1143100-mRNA-1 |
| chr7_4 | CDS | 18323483 | 18324271 | 18323483 | ID=Msa1143100-mRNA-1:cds;Parent=Msa1143100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
