Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355120 | AWW91873.1 | 98.842 | 259 | 3 | 0 | 1 | 259 | 1 | 259 | 9.75e-177 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355120 | sp|Q9BBS9|RPOB_LOTJA | 94.094 | 254 | 15 | 0 | 6 | 259 | 1 | 254 | 1.86e-168 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355120 | A0A2Z4KH34 | 98.842 | 259 | 3 | 0 | 1 | 259 | 1 | 259 | 4.66e-177 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1354940 | Msa1355120 | 0.863741 | 2.004149e-64 | -8.615850e-47 |
| Msa1355120 | Msa1380630 | 0.825139 | 5.516537e-54 | -8.615850e-47 |
| Msa1355120 | Msa1380700 | 0.838130 | 3.451938e-57 | -8.615850e-47 |
| Msa0139780 | Msa1355120 | 0.821615 | 3.673811e-53 | -8.615850e-47 |
| Msa0139790 | Msa1355120 | 0.802898 | 4.508222e-49 | -8.615850e-47 |
| Msa1305100 | Msa1355120 | 0.843914 | 1.044951e-58 | -8.615850e-47 |
| Msa1305160 | Msa1355120 | 0.838251 | 3.213191e-57 | -8.615850e-47 |
| Msa1086110 | Msa1355120 | 0.801261 | 9.787394e-49 | -8.615850e-47 |
| Msa1086240 | Msa1355120 | 0.813293 | 2.753779e-51 | -8.615850e-47 |
| Msa0268590 | Msa1355120 | 0.811495 | 6.802846e-51 | -8.615850e-47 |
| Msa1143100 | Msa1355120 | 0.804588 | 2.010127e-49 | -8.615850e-47 |
| Msa1143190 | Msa1355120 | 0.822612 | 2.158493e-53 | -8.615850e-47 |
| Msa0484000 | Msa1355120 | 0.810200 | 1.297321e-50 | -8.615850e-47 |
| Msa0582500 | Msa1355120 | 0.826274 | 2.968291e-54 | -8.615850e-47 |
| Msa0582670 | Msa1355120 | 0.855766 | 5.060720e-62 | -8.615850e-47 |
| Msa0582680 | Msa1355120 | 0.829767 | 4.281360e-55 | -8.615850e-47 |
| Msa0582790 | Msa1355120 | 0.809265 | 2.060804e-50 | -8.615850e-47 |
| Msa0582800 | Msa1355120 | 0.852280 | 5.119991e-61 | -8.615850e-47 |
| Msa0931050 | Msa1355120 | 0.866113 | 3.614204e-65 | -8.615850e-47 |
| Msa0931120 | Msa1355120 | 0.832573 | 8.750359e-56 | -8.615850e-47 |
| Msa0931250 | Msa1355120 | 0.837397 | 5.325793e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355120 | MtrunA17_Chr4g0016641 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 8.06e-179 | 520 |
| Msa1355120 | MtrunA17_CPg0493041 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 8.06e-179 | 520 |
| Msa1355120 | MtrunA17_Chr4g0015521 | 98.165 | 109 | 2 | 0 | 112 | 220 | 1 | 109 | 2.12e-72 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1355120 | ATCG00190.1 | 86.220 | 254 | 35 | 0 | 6 | 259 | 1 | 254 | 5.09e-151 | 449 |
Find 53 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATCCGCGGGATTAATT+TGG | 0.209384 | tig0014543:-725424 | Msa1355120:CDS |
| TTTCAACAAAGATGTGAATT+AGG | 0.219138 | tig0014543:-724913 | None:intergenic |
| CTGGGAACTTCTATAGTAAA+TGG | 0.231551 | tig0014543:-725338 | Msa1355120:CDS |
| ACATAAAGATTCAGGAAATA+TGG | 0.234879 | tig0014543:+724956 | None:intergenic |
| GTCAAAAGAAAATGCCATTT+TGG | 0.238441 | tig0014543:-725015 | Msa1355120:CDS |
| TTGATAGAAAAGCAAGGATA+TGG | 0.252693 | tig0014543:-725181 | Msa1355120:CDS |
| AATTCCGTACATAAAGATTC+AGG | 0.323867 | tig0014543:+724948 | None:intergenic |
| AAATTGTATTTGATTTAATC+CGG | 0.349804 | tig0014543:+725628 | None:intergenic |
| TTGTCGATAAAACTCCAAAA+TGG | 0.374690 | tig0014543:+725001 | None:intergenic |
| TGGGGAAATTGAAAATGCTT+GGG | 0.386996 | tig0014543:-725679 | Msa1355120:CDS |
| AATTGAAAATGCTTGGGGTT+GGG | 0.394420 | tig0014543:-725673 | Msa1355120:CDS |
| CATTCCTCTAATGAATTCCC+TGG | 0.423604 | tig0014543:-725357 | Msa1355120:CDS |
| ATGGGGAAATTGAAAATGCT+TGG | 0.425882 | tig0014543:-725680 | Msa1355120:CDS |
| TATGTCTTTCCTCAATGAAA+AGG | 0.429238 | tig0014543:-725054 | Msa1355120:CDS |
| ATGCTTGGGGTTGGGAATGA+AGG | 0.438598 | tig0014543:-725665 | Msa1355120:CDS |
| TGGCACAATAATATCCGATT+GGG | 0.439186 | tig0014543:-725225 | Msa1355120:CDS |
| CATAAAGATTCAGGAAATAT+GGG | 0.442441 | tig0014543:+724957 | None:intergenic |
| AATTGAATTTCAGTTATTTG+TGG | 0.443334 | tig0014543:-725525 | Msa1355120:CDS |
| GTTCCCAGGGAATTCATTAG+AGG | 0.450312 | tig0014543:+725353 | None:intergenic |
| AACGGAATTTCAGTCTATAC+TGG | 0.455189 | tig0014543:-725245 | Msa1355120:CDS |
| AAATTGAAAATGCTTGGGGT+TGG | 0.457271 | tig0014543:-725674 | Msa1355120:CDS |
| TTAAATCAAATACAATTTGA+AGG | 0.460401 | tig0014543:-725623 | Msa1355120:CDS |
| ATTTGTGGAAACATATCAAT+TGG | 0.470517 | tig0014543:-725510 | Msa1355120:CDS |
| CATTTACTATAGAAGTTCCC+AGG | 0.473812 | tig0014543:+725339 | None:intergenic |
| TCTAGTTCTATCATCAGCTA+TGG | 0.479428 | tig0014543:-725126 | Msa1355120:CDS |
| TATAGACTGAAATTCCGTTA+TGG | 0.489213 | tig0014543:+725249 | None:intergenic |
| CGTTCAGAGTTGGACCATAA+CGG | 0.495197 | tig0014543:-725263 | Msa1355120:CDS |
| ATTTCCTGAATCTTTATGTA+CGG | 0.495836 | tig0014543:-724952 | Msa1355120:CDS |
| TATCTATTATCGTTCAGAGT+TGG | 0.510246 | tig0014543:-725273 | Msa1355120:CDS |
| CTGGCACAATAATATCCGAT+TGG | 0.523488 | tig0014543:-725226 | Msa1355120:CDS |
| TGATAGAAAAGCAAGGATAT+GGG | 0.526528 | tig0014543:-725180 | Msa1355120:CDS |
| CGACAATTTGCTTGTGTAGG+CGG | 0.527978 | tig0014543:-724984 | Msa1355120:CDS |
| CTAGTTCTATCATCAGCTAT+GGG | 0.528023 | tig0014543:-725125 | Msa1355120:CDS |
| TAAATCAAATACAATTTGAA+GGG | 0.532005 | tig0014543:-725622 | Msa1355120:CDS |
| GGATATGGGCTCGTGTAAGT+AGG | 0.539731 | tig0014543:-725166 | Msa1355120:CDS |
| TAGAAATTGATAGAAAAGCA+AGG | 0.548786 | tig0014543:-725187 | Msa1355120:CDS |
| AATTGTATTTGATTTAATCC+GGG | 0.549785 | tig0014543:+725629 | None:intergenic |
| TATCGACAATTTGCTTGTGT+AGG | 0.554239 | tig0014543:-724987 | Msa1355120:CDS |
| TCTGAATTATATATATCCGC+GGG | 0.562320 | tig0014543:-725434 | Msa1355120:CDS |
| AATCAAATATTGCAAAGCCC+TGG | 0.569397 | tig0014543:-725296 | Msa1355120:CDS |
| CACAATAATATCCGATTGGG+GGG | 0.571960 | tig0014543:-725222 | Msa1355120:CDS |
| CTCTGAATTATATATATCCG+CGG | 0.577667 | tig0014543:-725435 | Msa1355120:CDS |
| GTCTTTCCTCAATGAAAAGG+AGG | 0.586724 | tig0014543:-725051 | Msa1355120:CDS |
| CGCGGATATATATAATTCAG+AGG | 0.586801 | tig0014543:+725436 | None:intergenic |
| ATTTACTATAGAAGTTCCCA+GGG | 0.587463 | tig0014543:+725340 | None:intergenic |
| TCTGAACGATAATAGATACC+AGG | 0.589979 | tig0014543:+725278 | None:intergenic |
| ATTCCTCTAATGAATTCCCT+GGG | 0.606971 | tig0014543:-725356 | Msa1355120:CDS |
| GGCACAATAATATCCGATTG+GGG | 0.627268 | tig0014543:-725224 | Msa1355120:CDS |
| GAAGGAATGTCTACACTACC+CGG | 0.627870 | tig0014543:-725647 | Msa1355120:CDS |
| ACAATAATATCCGATTGGGG+GGG | 0.637953 | tig0014543:-725221 | Msa1355120:CDS |
| CTGAACGATAATAGATACCA+GGG | 0.641198 | tig0014543:+725279 | None:intergenic |
| GGGGAAATTGAAAATGCTTG+GGG | 0.643696 | tig0014543:-725678 | Msa1355120:CDS |
| GCACAATAATATCCGATTGG+GGG | 0.683666 | tig0014543:-725223 | Msa1355120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGTATTTGATTTAATC+CGG | + | tig0014543:724969-724988 | None:intergenic | 15.0% |
| !! | TTAAATCAAATACAATTTGA+AGG | - | tig0014543:724971-724990 | Msa1355120:CDS | 15.0% |
| !! | TAAATCAAATACAATTTGAA+GGG | - | tig0014543:724972-724991 | Msa1355120:CDS | 15.0% |
| !!! | CAATAAAAATAATTTGTTCT+TGG | + | tig0014543:725213-725232 | None:intergenic | 15.0% |
| !!! | CAAGAACAAATTATTTTTAT+TGG | - | tig0014543:725211-725230 | Msa1355120:CDS | 15.0% |
| !!! | AAATTGTATTTGATTTAATC+CGG | + | tig0014543:724969-724988 | None:intergenic | 15.0% |
| !! | TTAAATCAAATACAATTTGA+AGG | - | tig0014543:724971-724990 | Msa1355120:CDS | 15.0% |
| !! | TAAATCAAATACAATTTGAA+GGG | - | tig0014543:724972-724991 | Msa1355120:CDS | 15.0% |
| !!! | CAATAAAAATAATTTGTTCT+TGG | + | tig0014543:725213-725232 | None:intergenic | 15.0% |
| !!! | CAAGAACAAATTATTTTTAT+TGG | - | tig0014543:725211-725230 | Msa1355120:CDS | 15.0% |
| !!! | AATTGTATTTGATTTAATCC+GGG | + | tig0014543:724968-724987 | None:intergenic | 20.0% |
| !! | AATTGAATTTCAGTTATTTG+TGG | - | tig0014543:725069-725088 | Msa1355120:CDS | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | - | tig0014543:725183-725202 | Msa1355120:CDS | 20.0% |
| !! | AAAAGGAGGAAAAAAAAATA+GGG | - | tig0014543:725557-725576 | Msa1355120:CDS | 20.0% |
| !!! | AATTGTATTTGATTTAATCC+GGG | + | tig0014543:724968-724987 | None:intergenic | 20.0% |
| !! | AATTGAATTTCAGTTATTTG+TGG | - | tig0014543:725069-725088 | Msa1355120:CDS | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | - | tig0014543:725183-725202 | Msa1355120:CDS | 20.0% |
| !! | AAAAGGAGGAAAAAAAAATA+GGG | - | tig0014543:725557-725576 | Msa1355120:CDS | 20.0% |
| ! | GTTTCCAAAAATTGAAGATA+CGG | - | tig0014543:725039-725058 | Msa1355120:CDS | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | - | tig0014543:725084-725103 | Msa1355120:CDS | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | - | tig0014543:725182-725201 | Msa1355120:CDS | 25.0% |
| ! | TAGAAATTGATAGAAAAGCA+AGG | - | tig0014543:725407-725426 | Msa1355120:CDS | 25.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | + | tig0014543:725532-725551 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | + | tig0014543:725533-725552 | None:intergenic | 25.0% |
| ! | GAAAAGGAGGAAAAAAAAAT+AGG | - | tig0014543:725556-725575 | Msa1355120:CDS | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | + | tig0014543:725640-725659 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | + | tig0014543:725641-725660 | None:intergenic | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | - | tig0014543:725642-725661 | Msa1355120:CDS | 25.0% |
| ! | GTTTCCAAAAATTGAAGATA+CGG | - | tig0014543:725039-725058 | Msa1355120:CDS | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | - | tig0014543:725084-725103 | Msa1355120:CDS | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | - | tig0014543:725182-725201 | Msa1355120:CDS | 25.0% |
| ! | TAGAAATTGATAGAAAAGCA+AGG | - | tig0014543:725407-725426 | Msa1355120:CDS | 25.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | + | tig0014543:725532-725551 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | + | tig0014543:725533-725552 | None:intergenic | 25.0% |
| ! | GAAAAGGAGGAAAAAAAAAT+AGG | - | tig0014543:725556-725575 | Msa1355120:CDS | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | + | tig0014543:725640-725659 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | + | tig0014543:725641-725660 | None:intergenic | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | - | tig0014543:725642-725661 | Msa1355120:CDS | 25.0% |
| !! | GGTTTTGTAGATTCATTGAT+CGG | - | tig0014543:724993-725012 | Msa1355120:CDS | 30.0% |
| ! | GTTTTGTAGATTCATTGATC+GGG | - | tig0014543:724994-725013 | Msa1355120:CDS | 30.0% |
| ! | TTTTGTAGATTCATTGATCG+GGG | - | tig0014543:724995-725014 | Msa1355120:CDS | 30.0% |
| ! | TGATCCGTATCTTCAATTTT+TGG | + | tig0014543:725046-725065 | None:intergenic | 30.0% |
| ! | GCATCTTTTTCTTTTATCGA+GGG | + | tig0014543:725115-725134 | None:intergenic | 30.0% |
| ! | AGCATCTTTTTCTTTTATCG+AGG | + | tig0014543:725116-725135 | None:intergenic | 30.0% |
| CTCTGAATTATATATATCCG+CGG | - | tig0014543:725159-725178 | Msa1355120:CDS | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | - | tig0014543:725160-725179 | Msa1355120:CDS | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | + | tig0014543:725257-725276 | None:intergenic | 30.0% | |
| TATCTATTATCGTTCAGAGT+TGG | - | tig0014543:725321-725340 | Msa1355120:CDS | 30.0% | |
| TATAGACTGAAATTCCGTTA+TGG | + | tig0014543:725348-725367 | None:intergenic | 30.0% | |
| TTGATAGAAAAGCAAGGATA+TGG | - | tig0014543:725413-725432 | Msa1355120:CDS | 30.0% | |
| TGATAGAAAAGCAAGGATAT+GGG | - | tig0014543:725414-725433 | Msa1355120:CDS | 30.0% | |
| GGAAAGACATAAAAATTTCG+GGG | + | tig0014543:725531-725550 | None:intergenic | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | - | tig0014543:725540-725559 | Msa1355120:CDS | 30.0% | |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | + | tig0014543:725552-725571 | None:intergenic | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | - | tig0014543:725579-725598 | Msa1355120:CDS | 30.0% |
| TTGTCGATAAAACTCCAAAA+TGG | + | tig0014543:725596-725615 | None:intergenic | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | + | tig0014543:725649-725668 | None:intergenic | 30.0% | |
| !! | GGTTTTGTAGATTCATTGAT+CGG | - | tig0014543:724993-725012 | Msa1355120:CDS | 30.0% |
| ! | GTTTTGTAGATTCATTGATC+GGG | - | tig0014543:724994-725013 | Msa1355120:CDS | 30.0% |
| ! | TTTTGTAGATTCATTGATCG+GGG | - | tig0014543:724995-725014 | Msa1355120:CDS | 30.0% |
| ! | TGATCCGTATCTTCAATTTT+TGG | + | tig0014543:725046-725065 | None:intergenic | 30.0% |
| ! | GCATCTTTTTCTTTTATCGA+GGG | + | tig0014543:725115-725134 | None:intergenic | 30.0% |
| ! | AGCATCTTTTTCTTTTATCG+AGG | + | tig0014543:725116-725135 | None:intergenic | 30.0% |
| CTCTGAATTATATATATCCG+CGG | - | tig0014543:725159-725178 | Msa1355120:CDS | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | - | tig0014543:725160-725179 | Msa1355120:CDS | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | + | tig0014543:725257-725276 | None:intergenic | 30.0% | |
| TATCTATTATCGTTCAGAGT+TGG | - | tig0014543:725321-725340 | Msa1355120:CDS | 30.0% | |
| TATAGACTGAAATTCCGTTA+TGG | + | tig0014543:725348-725367 | None:intergenic | 30.0% | |
| TTGATAGAAAAGCAAGGATA+TGG | - | tig0014543:725413-725432 | Msa1355120:CDS | 30.0% | |
| TGATAGAAAAGCAAGGATAT+GGG | - | tig0014543:725414-725433 | Msa1355120:CDS | 30.0% | |
| GGAAAGACATAAAAATTTCG+GGG | + | tig0014543:725531-725550 | None:intergenic | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | - | tig0014543:725540-725559 | Msa1355120:CDS | 30.0% | |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | + | tig0014543:725552-725571 | None:intergenic | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | - | tig0014543:725579-725598 | Msa1355120:CDS | 30.0% |
| TTGTCGATAAAACTCCAAAA+TGG | + | tig0014543:725596-725615 | None:intergenic | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | + | tig0014543:725649-725668 | None:intergenic | 30.0% | |
| ATGGGGAAATTGAAAATGCT+TGG | - | tig0014543:724914-724933 | Msa1355120:CDS | 35.0% | |
| TGGGGAAATTGAAAATGCTT+GGG | - | tig0014543:724915-724934 | Msa1355120:CDS | 35.0% | |
| AAATTGAAAATGCTTGGGGT+TGG | - | tig0014543:724920-724939 | Msa1355120:CDS | 35.0% | |
| AATTGAAAATGCTTGGGGTT+GGG | - | tig0014543:724921-724940 | Msa1355120:CDS | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | + | tig0014543:725161-725180 | None:intergenic | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | - | tig0014543:725170-725189 | Msa1355120:CDS | 35.0% | |
| ! | GTTTTTCCAAATTAATCCCG+CGG | + | tig0014543:725179-725198 | None:intergenic | 35.0% |
| ATTCCTCTAATGAATTCCCT+GGG | - | tig0014543:725238-725257 | Msa1355120:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | + | tig0014543:725258-725277 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | - | tig0014543:725256-725275 | Msa1355120:CDS | 35.0% | |
| AATCAAATATTGCAAAGCCC+TGG | - | tig0014543:725298-725317 | Msa1355120:CDS | 35.0% | |
| CTGAACGATAATAGATACCA+GGG | + | tig0014543:725318-725337 | None:intergenic | 35.0% | |
| TCTGAACGATAATAGATACC+AGG | + | tig0014543:725319-725338 | None:intergenic | 35.0% | |
| AACGGAATTTCAGTCTATAC+TGG | - | tig0014543:725349-725368 | Msa1355120:CDS | 35.0% | |
| TGGCACAATAATATCCGATT+GGG | - | tig0014543:725369-725388 | Msa1355120:CDS | 35.0% | |
| !! | TCTAGTTCTATCATCAGCTA+TGG | - | tig0014543:725468-725487 | Msa1355120:CDS | 35.0% |
| !! | CTAGTTCTATCATCAGCTAT+GGG | - | tig0014543:725469-725488 | Msa1355120:CDS | 35.0% |
| ! | TATCGACAATTTGCTTGTGT+AGG | - | tig0014543:725607-725626 | Msa1355120:CDS | 35.0% |
| ATGGGGAAATTGAAAATGCT+TGG | - | tig0014543:724914-724933 | Msa1355120:CDS | 35.0% | |
| TGGGGAAATTGAAAATGCTT+GGG | - | tig0014543:724915-724934 | Msa1355120:CDS | 35.0% | |
| AAATTGAAAATGCTTGGGGT+TGG | - | tig0014543:724920-724939 | Msa1355120:CDS | 35.0% | |
| AATTGAAAATGCTTGGGGTT+GGG | - | tig0014543:724921-724940 | Msa1355120:CDS | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | + | tig0014543:725161-725180 | None:intergenic | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | - | tig0014543:725170-725189 | Msa1355120:CDS | 35.0% | |
| ! | GTTTTTCCAAATTAATCCCG+CGG | + | tig0014543:725179-725198 | None:intergenic | 35.0% |
| ATTCCTCTAATGAATTCCCT+GGG | - | tig0014543:725238-725257 | Msa1355120:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | + | tig0014543:725258-725277 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | - | tig0014543:725256-725275 | Msa1355120:CDS | 35.0% | |
| AATCAAATATTGCAAAGCCC+TGG | - | tig0014543:725298-725317 | Msa1355120:CDS | 35.0% | |
| CTGAACGATAATAGATACCA+GGG | + | tig0014543:725318-725337 | None:intergenic | 35.0% | |
| TCTGAACGATAATAGATACC+AGG | + | tig0014543:725319-725338 | None:intergenic | 35.0% | |
| AACGGAATTTCAGTCTATAC+TGG | - | tig0014543:725349-725368 | Msa1355120:CDS | 35.0% | |
| TGGCACAATAATATCCGATT+GGG | - | tig0014543:725369-725388 | Msa1355120:CDS | 35.0% | |
| !! | TCTAGTTCTATCATCAGCTA+TGG | - | tig0014543:725468-725487 | Msa1355120:CDS | 35.0% |
| !! | CTAGTTCTATCATCAGCTAT+GGG | - | tig0014543:725469-725488 | Msa1355120:CDS | 35.0% |
| ! | TATCGACAATTTGCTTGTGT+AGG | - | tig0014543:725607-725626 | Msa1355120:CDS | 35.0% |
| GGGGAAATTGAAAATGCTTG+GGG | - | tig0014543:724916-724935 | Msa1355120:CDS | 40.0% | |
| CATTCCTCTAATGAATTCCC+TGG | - | tig0014543:725237-725256 | Msa1355120:CDS | 40.0% | |
| CTGGCACAATAATATCCGAT+TGG | - | tig0014543:725368-725387 | Msa1355120:CDS | 40.0% | |
| GGCACAATAATATCCGATTG+GGG | - | tig0014543:725370-725389 | Msa1355120:CDS | 40.0% | |
| GCACAATAATATCCGATTGG+GGG | - | tig0014543:725371-725390 | Msa1355120:CDS | 40.0% | |
| CACAATAATATCCGATTGGG+GGG | - | tig0014543:725372-725391 | Msa1355120:CDS | 40.0% | |
| ACAATAATATCCGATTGGGG+GGG | - | tig0014543:725373-725392 | Msa1355120:CDS | 40.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | - | tig0014543:725543-725562 | Msa1355120:CDS | 40.0% | |
| GGGGAAATTGAAAATGCTTG+GGG | - | tig0014543:724916-724935 | Msa1355120:CDS | 40.0% | |
| CATTCCTCTAATGAATTCCC+TGG | - | tig0014543:725237-725256 | Msa1355120:CDS | 40.0% | |
| CTGGCACAATAATATCCGAT+TGG | - | tig0014543:725368-725387 | Msa1355120:CDS | 40.0% | |
| GGCACAATAATATCCGATTG+GGG | - | tig0014543:725370-725389 | Msa1355120:CDS | 40.0% | |
| GCACAATAATATCCGATTGG+GGG | - | tig0014543:725371-725390 | Msa1355120:CDS | 40.0% | |
| CACAATAATATCCGATTGGG+GGG | - | tig0014543:725372-725391 | Msa1355120:CDS | 40.0% | |
| ACAATAATATCCGATTGGGG+GGG | - | tig0014543:725373-725392 | Msa1355120:CDS | 40.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | - | tig0014543:725543-725562 | Msa1355120:CDS | 40.0% | |
| GAAGGAATGTCTACACTACC+CGG | - | tig0014543:724947-724966 | Msa1355120:CDS | 45.0% | |
| GTTCCCAGGGAATTCATTAG+AGG | + | tig0014543:725244-725263 | None:intergenic | 45.0% | |
| CGTTCAGAGTTGGACCATAA+CGG | - | tig0014543:725331-725350 | Msa1355120:CDS | 45.0% | |
| ! | CGACAATTTGCTTGTGTAGG+CGG | - | tig0014543:725610-725629 | Msa1355120:CDS | 45.0% |
| GAAGGAATGTCTACACTACC+CGG | - | tig0014543:724947-724966 | Msa1355120:CDS | 45.0% | |
| GTTCCCAGGGAATTCATTAG+AGG | + | tig0014543:725244-725263 | None:intergenic | 45.0% | |
| CGTTCAGAGTTGGACCATAA+CGG | - | tig0014543:725331-725350 | Msa1355120:CDS | 45.0% | |
| ! | CGACAATTTGCTTGTGTAGG+CGG | - | tig0014543:725610-725629 | Msa1355120:CDS | 45.0% |
| ATGCTTGGGGTTGGGAATGA+AGG | - | tig0014543:724929-724948 | Msa1355120:CDS | 50.0% | |
| CTCTAATCTTCCCCCCCAAT+CGG | + | tig0014543:725386-725405 | None:intergenic | 50.0% | |
| GGATATGGGCTCGTGTAAGT+AGG | - | tig0014543:725428-725447 | Msa1355120:CDS | 50.0% | |
| ATGCTTGGGGTTGGGAATGA+AGG | - | tig0014543:724929-724948 | Msa1355120:CDS | 50.0% | |
| CTCTAATCTTCCCCCCCAAT+CGG | + | tig0014543:725386-725405 | None:intergenic | 50.0% | |
| GGATATGGGCTCGTGTAAGT+AGG | - | tig0014543:725428-725447 | Msa1355120:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 724914 | 725702 | 724914 | ID=Msa1355120;Name=Msa1355120 |
| tig0014543 | mRNA | 724914 | 725702 | 724914 | ID=Msa1355120-mRNA-1;Parent=Msa1355120;Name=Msa1355120-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|262 |
| tig0014543 | exon | 724914 | 725702 | 724914 | ID=Msa1355120-mRNA-1:exon:9293;Parent=Msa1355120-mRNA-1 |
| tig0014543 | CDS | 724914 | 725702 | 724914 | ID=Msa1355120-mRNA-1:cds;Parent=Msa1355120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
