Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143230 | XP_003622535.1 | 62.759 | 145 | 53 | 1 | 1 | 144 | 1 | 145 | 1.67e-58 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143230 | sp|P62930|ALB1E_PEA | 44.615 | 130 | 66 | 4 | 1 | 127 | 1 | 127 | 2.03e-28 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143230 | G7KTY0 | 62.759 | 145 | 53 | 1 | 1 | 144 | 1 | 145 | 7.99e-59 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096120 | Msa1143230 | 0.942487 | 6.589965e-102 | -8.615850e-47 |
| Msa1143230 | Msa1243340 | 0.929374 | 7.614952e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143230 | MtrunA17_Chr7g0232011 | 62.759 | 145 | 53 | 1 | 1 | 144 | 1 | 145 | 1.54e-62 | 188 |
| Msa1143230 | MtrunA17_Chr8g0357331 | 88.776 | 98 | 11 | 0 | 47 | 144 | 4 | 101 | 8.37e-61 | 182 |
| Msa1143230 | MtrunA17_Chr7g0231991 | 56.818 | 132 | 49 | 4 | 21 | 144 | 1 | 132 | 8.51e-40 | 130 |
| Msa1143230 | MtrunA17_Chr8g0359071 | 55.140 | 107 | 41 | 3 | 17 | 117 | 19 | 124 | 4.03e-32 | 111 |
| Msa1143230 | MtrunA17_Chr6g0464071 | 45.139 | 144 | 63 | 5 | 1 | 140 | 1 | 132 | 4.08e-32 | 110 |
| Msa1143230 | MtrunA17_Chr3g0111131 | 48.760 | 121 | 57 | 3 | 1 | 116 | 1 | 121 | 3.08e-31 | 108 |
| Msa1143230 | MtrunA17_Chr3g0090571 | 40.909 | 154 | 81 | 5 | 1 | 144 | 1 | 154 | 4.12e-31 | 108 |
| Msa1143230 | MtrunA17_Chr3g0104571 | 41.497 | 147 | 70 | 5 | 1 | 142 | 1 | 136 | 3.99e-29 | 103 |
| Msa1143230 | MtrunA17_Chr7g0236801 | 41.611 | 149 | 66 | 7 | 1 | 140 | 1 | 137 | 3.80e-28 | 100 |
| Msa1143230 | MtrunA17_Chr3g0111081 | 43.750 | 144 | 63 | 6 | 1 | 139 | 1 | 131 | 6.29e-28 | 100 |
| Msa1143230 | MtrunA17_Chr6g0456951 | 48.462 | 130 | 61 | 5 | 1 | 124 | 1 | 130 | 1.48e-27 | 99.8 |
| Msa1143230 | MtrunA17_Chr3g0111111 | 43.066 | 137 | 64 | 6 | 1 | 125 | 1 | 135 | 2.22e-27 | 99.0 |
| Msa1143230 | MtrunA17_Chr3g0111071 | 43.056 | 144 | 64 | 6 | 1 | 139 | 1 | 131 | 1.39e-26 | 97.1 |
| Msa1143230 | MtrunA17_Chr4g0012121 | 40.146 | 137 | 61 | 4 | 18 | 144 | 20 | 145 | 3.17e-26 | 96.3 |
| Msa1143230 | MtrunA17_Chr8g0344801 | 51.648 | 91 | 41 | 2 | 41 | 128 | 6 | 96 | 5.52e-26 | 94.4 |
| Msa1143230 | MtrunA17_Chr3g0111191 | 45.378 | 119 | 52 | 5 | 1 | 108 | 1 | 117 | 4.87e-25 | 92.4 |
| Msa1143230 | MtrunA17_Chr3g0111241 | 48.276 | 116 | 54 | 3 | 1 | 110 | 1 | 116 | 7.65e-25 | 92.4 |
| Msa1143230 | MtrunA17_Chr6g0456991 | 47.170 | 106 | 49 | 5 | 18 | 117 | 1 | 105 | 8.00e-25 | 91.7 |
| Msa1143230 | MtrunA17_Chr3g0111351 | 43.448 | 145 | 66 | 5 | 1 | 140 | 9 | 142 | 6.47e-24 | 90.5 |
| Msa1143230 | MtrunA17_Chr8g0344771 | 48.980 | 98 | 46 | 3 | 32 | 125 | 12 | 109 | 6.51e-24 | 89.7 |
| Msa1143230 | MtrunA17_Chr7g0236791 | 41.497 | 147 | 68 | 7 | 1 | 140 | 1 | 136 | 9.91e-24 | 89.7 |
| Msa1143230 | MtrunA17_Chr8g0344791 | 45.872 | 109 | 54 | 4 | 21 | 125 | 2 | 109 | 6.17e-23 | 87.0 |
| Msa1143230 | MtrunA17_Chr3g0111311 | 47.253 | 91 | 47 | 1 | 21 | 110 | 1 | 91 | 1.52e-20 | 80.1 |
| Msa1143230 | MtrunA17_Chr3g0111281 | 39.130 | 138 | 68 | 4 | 1 | 125 | 1 | 135 | 2.55e-20 | 80.9 |
| Msa1143230 | MtrunA17_Chr1g0153591 | 39.831 | 118 | 56 | 5 | 1 | 114 | 1 | 107 | 6.34e-20 | 79.3 |
| Msa1143230 | MtrunA17_Chr3g0111261 | 41.353 | 133 | 68 | 4 | 1 | 125 | 1 | 131 | 3.06e-19 | 78.2 |
| Msa1143230 | MtrunA17_Chr6g0468601 | 36.434 | 129 | 74 | 5 | 1 | 122 | 1 | 128 | 4.67e-19 | 77.8 |
| Msa1143230 | MtrunA17_Chr3g0111221 | 43.182 | 88 | 47 | 2 | 41 | 125 | 22 | 109 | 9.91e-18 | 73.6 |
| Msa1143230 | MtrunA17_Chr6g0468621 | 37.838 | 148 | 73 | 6 | 1 | 143 | 1 | 134 | 4.36e-17 | 72.4 |
| Msa1143230 | MtrunA17_Chr7g0225821 | 36.441 | 118 | 60 | 4 | 6 | 114 | 9 | 120 | 2.55e-16 | 70.5 |
| Msa1143230 | MtrunA17_Chr3g0111711 | 44.762 | 105 | 46 | 7 | 1 | 95 | 1 | 103 | 6.60e-14 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTGCTTCAACGTTAG+AGG | 0.288036 | 7_4:+18615658 | None:intergenic |
| CCATGTTGGAGCTCAGAATT+AGG | 0.295933 | 7_4:+18615692 | None:intergenic |
| TAGAAGCATGTGAGAACTTT+TGG | 0.303115 | 7_4:-18615895 | Msa1143230:CDS |
| AAGCCAACTGGTTGGTTAGT+TGG | 0.366737 | 7_4:+18615447 | None:intergenic |
| GACTGCATCAAGAAGGGAAC+TGG | 0.398345 | 7_4:-18615734 | Msa1143230:CDS |
| GAATTTGTTTATTGCAAGGT+TGG | 0.400644 | 7_4:+18615619 | None:intergenic |
| ATAGCAGCGGCAGGATTGGC+TGG | 0.400771 | 7_4:-18615827 | Msa1143230:CDS |
| ATTGTTTGTTACGAAAGATC+AGG | 0.437721 | 7_4:+18616208 | None:intergenic |
| GTCATGAGATTGACATAAGT+TGG | 0.456131 | 7_4:+18615757 | None:intergenic |
| TTGAACATATCAGGATTAAG+TGG | 0.466761 | 7_4:+18615538 | None:intergenic |
| AATGATATCTAAAAGCCAAC+TGG | 0.475065 | 7_4:+18615435 | None:intergenic |
| TTGTATAGCAGCGGCAGGAT+TGG | 0.480742 | 7_4:-18615831 | Msa1143230:CDS |
| ACATGCTTCTATCTTCGTCA+TGG | 0.495832 | 7_4:+18615907 | None:intergenic |
| TATCATTGTAGCAGTGGTTG+TGG | 0.506391 | 7_4:-18615854 | Msa1143230:CDS |
| TGAGGAATTTGTTTATTGCA+AGG | 0.514801 | 7_4:+18615615 | None:intergenic |
| TCATGAGATTGACATAAGTT+GGG | 0.516254 | 7_4:+18615758 | None:intergenic |
| GATTAAGTGGCAATCTCCAC+AGG | 0.518992 | 7_4:+18615551 | None:intergenic |
| TGTGGTTGTATAGCAGCGGC+AGG | 0.525854 | 7_4:-18615836 | Msa1143230:CDS |
| CAATAACTGTAGCATGCGCA+TGG | 0.529295 | 7_4:-18615403 | Msa1143230:three_prime_UTR |
| TAGCTGCATAATATAACGCA+TGG | 0.529544 | 7_4:+18615502 | None:intergenic |
| CATGCTTCTATCTTCGTCAT+GGG | 0.530738 | 7_4:+18615908 | None:intergenic |
| ATTCTGAGCTCCAACATGGC+TGG | 0.533075 | 7_4:-18615688 | Msa1143230:CDS |
| TAGCAGCGGCAGGATTGGCT+GGG | 0.538187 | 7_4:-18615826 | Msa1143230:CDS |
| ACCACAGTTAACTATTACGA+AGG | 0.540571 | 7_4:-18615795 | Msa1143230:CDS |
| TCATGACGACTGCATCAAGA+AGG | 0.549615 | 7_4:-18615741 | Msa1143230:CDS |
| TGAAGCAGAACAGTACTTCG+AGG | 0.550769 | 7_4:-18615648 | Msa1143230:CDS |
| AATGGATATCATTGTAGCAG+TGG | 0.551719 | 7_4:-18615860 | Msa1143230:CDS |
| GATAAAATACACACAGATTG+TGG | 0.551779 | 7_4:+18616116 | None:intergenic |
| TCGTAATAGTTAACTGTGGT+CGG | 0.573176 | 7_4:+18615798 | None:intergenic |
| AGGTAAAACACCAGCCATGT+TGG | 0.578092 | 7_4:+18615678 | None:intergenic |
| TCTTTCTCTCAATCAAACAA+TGG | 0.583206 | 7_4:-18616175 | Msa1143230:exon |
| AACTATTACGAAGGCAGTCG+AGG | 0.583300 | 7_4:-18615786 | Msa1143230:CDS |
| CCTAATTCTGAGCTCCAACA+TGG | 0.593295 | 7_4:-18615692 | Msa1143230:CDS |
| TTTCCAACTAACCAACCAGT+TGG | 0.605589 | 7_4:-18615450 | Msa1143230:three_prime_UTR |
| ATATCTAAAAGCCAACTGGT+TGG | 0.612829 | 7_4:+18615439 | None:intergenic |
| AGCTGCATAATATAACGCAT+GGG | 0.618597 | 7_4:+18615503 | None:intergenic |
| AATAACTGTAGCATGCGCAT+GGG | 0.620372 | 7_4:-18615402 | Msa1143230:three_prime_UTR |
| TGGAGTAAAAGATATTCTTG+AGG | 0.626728 | 7_4:+18615597 | None:intergenic |
| CATGACGACTGCATCAAGAA+GGG | 0.629712 | 7_4:-18615740 | Msa1143230:CDS |
| ACTGCATCAAGAAGGGAACT+GGG | 0.650923 | 7_4:-18615733 | Msa1143230:CDS |
| TGGTTGTGGTTGTATAGCAG+CGG | 0.658668 | 7_4:-18615840 | Msa1143230:CDS |
| AGGATTCTTGAAGATGCCTG+TGG | 0.661804 | 7_4:-18615567 | Msa1143230:CDS |
| ATGCTTCTATCTTCGTCATG+GGG | 0.685652 | 7_4:+18615909 | None:intergenic |
| GCCTTCGTAATAGTTAACTG+TGG | 0.719007 | 7_4:+18615794 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTAATTGAAATACT+AGG | + | chr7_4:18615559-18615578 | None:intergenic | 15.0% |
| !!! | AATTTTGTAATTGAAATACT+AGG | + | chr7_4:18615559-18615578 | None:intergenic | 15.0% |
| !!! | TTTTGGTGTACAATATTTAA+TGG | - | chr7_4:18615711-18615730 | Msa1143230:CDS | 20.0% |
| !!! | TTTTGGTGTACAATATTTAA+TGG | - | chr7_4:18615711-18615730 | Msa1143230:CDS | 20.0% |
| !! | AAGAATATCTTTTACTCCAA+TGG | - | chr7_4:18615996-18616015 | Msa1143230:intron | 25.0% |
| !!! | TTTTGTTTCTTGAACATATC+AGG | + | chr7_4:18616063-18616082 | None:intergenic | 25.0% |
| !! | AAGAATATCTTTTACTCCAA+TGG | - | chr7_4:18615996-18616015 | Msa1143230:intron | 25.0% |
| !!! | TTTTGTTTCTTGAACATATC+AGG | + | chr7_4:18616063-18616082 | None:intergenic | 25.0% |
| TCTTTCTCTCAATCAAACAA+TGG | - | chr7_4:18615414-18615433 | Msa1143230:three_prime_UTR | 30.0% | |
| GATAAAATACACACAGATTG+TGG | + | chr7_4:18615476-18615495 | None:intergenic | 30.0% | |
| GTGAATCAACTCCAAAATAT+TGG | - | chr7_4:18615533-18615552 | Msa1143230:three_prime_UTR | 30.0% | |
| ! | GAAATACTAGGCCAATATTT+TGG | + | chr7_4:18615547-18615566 | None:intergenic | 30.0% |
| ACATACATCAATGCAACATA+TGG | + | chr7_4:18615606-18615625 | None:intergenic | 30.0% | |
| TCATGAGATTGACATAAGTT+GGG | + | chr7_4:18615834-18615853 | None:intergenic | 30.0% | |
| ! | GAATTTGTTTATTGCAAGGT+TGG | + | chr7_4:18615973-18615992 | None:intergenic | 30.0% |
| ! | TGAGGAATTTGTTTATTGCA+AGG | + | chr7_4:18615977-18615996 | None:intergenic | 30.0% |
| TGGAGTAAAAGATATTCTTG+AGG | + | chr7_4:18615995-18616014 | None:intergenic | 30.0% | |
| ! | ATCTTTTACTCCAATGGAAA+AGG | - | chr7_4:18616002-18616021 | Msa1143230:intron | 30.0% |
| TTGAACATATCAGGATTAAG+TGG | + | chr7_4:18616054-18616073 | None:intergenic | 30.0% | |
| AATGATATCTAAAAGCCAAC+TGG | + | chr7_4:18616157-18616176 | None:intergenic | 30.0% | |
| ! | ATTGTTTGTTACGAAAGATC+AGG | + | chr7_4:18615384-18615403 | None:intergenic | 30.0% |
| TCTTTCTCTCAATCAAACAA+TGG | - | chr7_4:18615414-18615433 | Msa1143230:three_prime_UTR | 30.0% | |
| GATAAAATACACACAGATTG+TGG | + | chr7_4:18615476-18615495 | None:intergenic | 30.0% | |
| GTGAATCAACTCCAAAATAT+TGG | - | chr7_4:18615533-18615552 | Msa1143230:three_prime_UTR | 30.0% | |
| ! | GAAATACTAGGCCAATATTT+TGG | + | chr7_4:18615547-18615566 | None:intergenic | 30.0% |
| ACATACATCAATGCAACATA+TGG | + | chr7_4:18615606-18615625 | None:intergenic | 30.0% | |
| TCATGAGATTGACATAAGTT+GGG | + | chr7_4:18615834-18615853 | None:intergenic | 30.0% | |
| ! | GAATTTGTTTATTGCAAGGT+TGG | + | chr7_4:18615973-18615992 | None:intergenic | 30.0% |
| ! | TGAGGAATTTGTTTATTGCA+AGG | + | chr7_4:18615977-18615996 | None:intergenic | 30.0% |
| TGGAGTAAAAGATATTCTTG+AGG | + | chr7_4:18615995-18616014 | None:intergenic | 30.0% | |
| ! | ATCTTTTACTCCAATGGAAA+AGG | - | chr7_4:18616002-18616021 | Msa1143230:intron | 30.0% |
| TTGAACATATCAGGATTAAG+TGG | + | chr7_4:18616054-18616073 | None:intergenic | 30.0% | |
| AATGATATCTAAAAGCCAAC+TGG | + | chr7_4:18616157-18616176 | None:intergenic | 30.0% | |
| CATATGGTATGACAGTTGAT+CGG | + | chr7_4:18615590-18615609 | None:intergenic | 35.0% | |
| !! | TAGAAGCATGTGAGAACTTT+TGG | - | chr7_4:18615694-18615713 | Msa1143230:CDS | 35.0% |
| AATGGATATCATTGTAGCAG+TGG | - | chr7_4:18615729-18615748 | Msa1143230:CDS | 35.0% | |
| TCGTAATAGTTAACTGTGGT+CGG | + | chr7_4:18615794-18615813 | None:intergenic | 35.0% | |
| ACCACAGTTAACTATTACGA+AGG | - | chr7_4:18615794-18615813 | Msa1143230:CDS | 35.0% | |
| GTCATGAGATTGACATAAGT+TGG | + | chr7_4:18615835-18615854 | None:intergenic | 35.0% | |
| ! | CTTCAAGAATCCTTTTCCAT+TGG | + | chr7_4:18616015-18616034 | None:intergenic | 35.0% |
| AGCTGCATAATATAACGCAT+GGG | + | chr7_4:18616089-18616108 | None:intergenic | 35.0% | |
| TAGCTGCATAATATAACGCA+TGG | + | chr7_4:18616090-18616109 | None:intergenic | 35.0% | |
| ATATCTAAAAGCCAACTGGT+TGG | + | chr7_4:18616153-18616172 | None:intergenic | 35.0% | |
| CATATGGTATGACAGTTGAT+CGG | + | chr7_4:18615590-18615609 | None:intergenic | 35.0% | |
| !! | TAGAAGCATGTGAGAACTTT+TGG | - | chr7_4:18615694-18615713 | Msa1143230:CDS | 35.0% |
| AATGGATATCATTGTAGCAG+TGG | - | chr7_4:18615729-18615748 | Msa1143230:CDS | 35.0% | |
| TCGTAATAGTTAACTGTGGT+CGG | + | chr7_4:18615794-18615813 | None:intergenic | 35.0% | |
| ACCACAGTTAACTATTACGA+AGG | - | chr7_4:18615794-18615813 | Msa1143230:CDS | 35.0% | |
| GTCATGAGATTGACATAAGT+TGG | + | chr7_4:18615835-18615854 | None:intergenic | 35.0% | |
| ! | CTTCAAGAATCCTTTTCCAT+TGG | + | chr7_4:18616015-18616034 | None:intergenic | 35.0% |
| AGCTGCATAATATAACGCAT+GGG | + | chr7_4:18616089-18616108 | None:intergenic | 35.0% | |
| TAGCTGCATAATATAACGCA+TGG | + | chr7_4:18616090-18616109 | None:intergenic | 35.0% | |
| ATATCTAAAAGCCAACTGGT+TGG | + | chr7_4:18616153-18616172 | None:intergenic | 35.0% | |
| ATGCTTCTATCTTCGTCATG+GGG | + | chr7_4:18615683-18615702 | None:intergenic | 40.0% | |
| CATGCTTCTATCTTCGTCAT+GGG | + | chr7_4:18615684-18615703 | None:intergenic | 40.0% | |
| ACATGCTTCTATCTTCGTCA+TGG | + | chr7_4:18615685-18615704 | None:intergenic | 40.0% | |
| TATCATTGTAGCAGTGGTTG+TGG | - | chr7_4:18615735-18615754 | Msa1143230:CDS | 40.0% | |
| GCCTTCGTAATAGTTAACTG+TGG | + | chr7_4:18615798-18615817 | None:intergenic | 40.0% | |
| TTTCCAACTAACCAACCAGT+TGG | - | chr7_4:18616139-18616158 | Msa1143230:CDS | 40.0% | |
| AATAACTGTAGCATGCGCAT+GGG | - | chr7_4:18616187-18616206 | Msa1143230:five_prime_UTR | 40.0% | |
| ATGCTTCTATCTTCGTCATG+GGG | + | chr7_4:18615683-18615702 | None:intergenic | 40.0% | |
| CATGCTTCTATCTTCGTCAT+GGG | + | chr7_4:18615684-18615703 | None:intergenic | 40.0% | |
| ACATGCTTCTATCTTCGTCA+TGG | + | chr7_4:18615685-18615704 | None:intergenic | 40.0% | |
| TATCATTGTAGCAGTGGTTG+TGG | - | chr7_4:18615735-18615754 | Msa1143230:CDS | 40.0% | |
| GCCTTCGTAATAGTTAACTG+TGG | + | chr7_4:18615798-18615817 | None:intergenic | 40.0% | |
| TTTCCAACTAACCAACCAGT+TGG | - | chr7_4:18616139-18616158 | Msa1143230:CDS | 40.0% | |
| AATAACTGTAGCATGCGCAT+GGG | - | chr7_4:18616187-18616206 | Msa1143230:five_prime_UTR | 40.0% | |
| TGGTTGTGGTTGTATAGCAG+CGG | - | chr7_4:18615749-18615768 | Msa1143230:CDS | 45.0% | |
| AACTATTACGAAGGCAGTCG+AGG | - | chr7_4:18615803-18615822 | Msa1143230:CDS | 45.0% | |
| TCATGACGACTGCATCAAGA+AGG | - | chr7_4:18615848-18615867 | Msa1143230:CDS | 45.0% | |
| CATGACGACTGCATCAAGAA+GGG | - | chr7_4:18615849-18615868 | Msa1143230:CDS | 45.0% | |
| ACTGCATCAAGAAGGGAACT+GGG | - | chr7_4:18615856-18615875 | Msa1143230:CDS | 45.0% | |
| CCATGTTGGAGCTCAGAATT+AGG | + | chr7_4:18615900-18615919 | None:intergenic | 45.0% | |
| CCTAATTCTGAGCTCCAACA+TGG | - | chr7_4:18615897-18615916 | Msa1143230:CDS | 45.0% | |
| AGGTAAAACACCAGCCATGT+TGG | + | chr7_4:18615914-18615933 | None:intergenic | 45.0% | |
| CTGTTCTGCTTCAACGTTAG+AGG | + | chr7_4:18615934-18615953 | None:intergenic | 45.0% | |
| TGAAGCAGAACAGTACTTCG+AGG | - | chr7_4:18615941-18615960 | Msa1143230:intron | 45.0% | |
| AGGATTCTTGAAGATGCCTG+TGG | - | chr7_4:18616022-18616041 | Msa1143230:intron | 45.0% | |
| GATTAAGTGGCAATCTCCAC+AGG | + | chr7_4:18616041-18616060 | None:intergenic | 45.0% | |
| ! | AAGCCAACTGGTTGGTTAGT+TGG | + | chr7_4:18616145-18616164 | None:intergenic | 45.0% |
| CAATAACTGTAGCATGCGCA+TGG | - | chr7_4:18616186-18616205 | Msa1143230:five_prime_UTR | 45.0% | |
| TGGTTGTGGTTGTATAGCAG+CGG | - | chr7_4:18615749-18615768 | Msa1143230:CDS | 45.0% | |
| AACTATTACGAAGGCAGTCG+AGG | - | chr7_4:18615803-18615822 | Msa1143230:CDS | 45.0% | |
| TCATGACGACTGCATCAAGA+AGG | - | chr7_4:18615848-18615867 | Msa1143230:CDS | 45.0% | |
| CATGACGACTGCATCAAGAA+GGG | - | chr7_4:18615849-18615868 | Msa1143230:CDS | 45.0% | |
| ACTGCATCAAGAAGGGAACT+GGG | - | chr7_4:18615856-18615875 | Msa1143230:CDS | 45.0% | |
| CCATGTTGGAGCTCAGAATT+AGG | + | chr7_4:18615900-18615919 | None:intergenic | 45.0% | |
| CCTAATTCTGAGCTCCAACA+TGG | - | chr7_4:18615897-18615916 | Msa1143230:CDS | 45.0% | |
| AGGTAAAACACCAGCCATGT+TGG | + | chr7_4:18615914-18615933 | None:intergenic | 45.0% | |
| CTGTTCTGCTTCAACGTTAG+AGG | + | chr7_4:18615934-18615953 | None:intergenic | 45.0% | |
| TGAAGCAGAACAGTACTTCG+AGG | - | chr7_4:18615941-18615960 | Msa1143230:intron | 45.0% | |
| AGGATTCTTGAAGATGCCTG+TGG | - | chr7_4:18616022-18616041 | Msa1143230:intron | 45.0% | |
| GATTAAGTGGCAATCTCCAC+AGG | + | chr7_4:18616041-18616060 | None:intergenic | 45.0% | |
| ! | AAGCCAACTGGTTGGTTAGT+TGG | + | chr7_4:18616145-18616164 | None:intergenic | 45.0% |
| CAATAACTGTAGCATGCGCA+TGG | - | chr7_4:18616186-18616205 | Msa1143230:five_prime_UTR | 45.0% | |
| TTGTATAGCAGCGGCAGGAT+TGG | - | chr7_4:18615758-18615777 | Msa1143230:CDS | 50.0% | |
| GACTGCATCAAGAAGGGAAC+TGG | - | chr7_4:18615855-18615874 | Msa1143230:CDS | 50.0% | |
| ATTCTGAGCTCCAACATGGC+TGG | - | chr7_4:18615901-18615920 | Msa1143230:CDS | 50.0% | |
| TTGTATAGCAGCGGCAGGAT+TGG | - | chr7_4:18615758-18615777 | Msa1143230:CDS | 50.0% | |
| GACTGCATCAAGAAGGGAAC+TGG | - | chr7_4:18615855-18615874 | Msa1143230:CDS | 50.0% | |
| ATTCTGAGCTCCAACATGGC+TGG | - | chr7_4:18615901-18615920 | Msa1143230:CDS | 50.0% | |
| TGTGGTTGTATAGCAGCGGC+AGG | - | chr7_4:18615753-18615772 | Msa1143230:CDS | 55.0% | |
| TGTGGTTGTATAGCAGCGGC+AGG | - | chr7_4:18615753-18615772 | Msa1143230:CDS | 55.0% | |
| ! | ATAGCAGCGGCAGGATTGGC+TGG | - | chr7_4:18615762-18615781 | Msa1143230:CDS | 60.0% |
| !! | TAGCAGCGGCAGGATTGGCT+GGG | - | chr7_4:18615763-18615782 | Msa1143230:CDS | 60.0% |
| ! | ATAGCAGCGGCAGGATTGGC+TGG | - | chr7_4:18615762-18615781 | Msa1143230:CDS | 60.0% |
| !! | TAGCAGCGGCAGGATTGGCT+GGG | - | chr7_4:18615763-18615782 | Msa1143230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 18615382 | 18616229 | 18615382 | ID=Msa1143230;Name=Msa1143230 |
| chr7_4 | mRNA | 18615382 | 18616229 | 18615382 | ID=Msa1143230-mRNA-1;Parent=Msa1143230;Name=Msa1143230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51|1|1|1|0|0|2|171|144 |
| chr7_4 | exon | 18615382 | 18615938 | 18615382 | ID=Msa1143230-mRNA-1:exon:4116;Parent=Msa1143230-mRNA-1 |
| chr7_4 | exon | 18616130 | 18616229 | 18616130 | ID=Msa1143230-mRNA-1:exon:4115;Parent=Msa1143230-mRNA-1 |
| chr7_4 | five_prime_UTR | 18616179 | 18616229 | 18616179 | ID=Msa1143230-mRNA-1:five_prime_utr;Parent=Msa1143230-mRNA-1 |
| chr7_4 | CDS | 18616130 | 18616178 | 18616130 | ID=Msa1143230-mRNA-1:cds;Parent=Msa1143230-mRNA-1 |
| chr7_4 | CDS | 18615553 | 18615938 | 18615553 | ID=Msa1143230-mRNA-1:cds;Parent=Msa1143230-mRNA-1 |
| chr7_4 | three_prime_UTR | 18615382 | 18615552 | 18615382 | ID=Msa1143230-mRNA-1:three_prime_utr;Parent=Msa1143230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
