Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1243340 | XP_003622535.1 | 62.759 | 145 | 53 | 1 | 1 | 144 | 1 | 145 | 1.55e-58 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1243340 | sp|P62930|ALB1E_PEA | 43.846 | 130 | 67 | 4 | 1 | 127 | 1 | 127 | 7.07e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1243340 | G7KTY0 | 62.759 | 145 | 53 | 1 | 1 | 144 | 1 | 145 | 7.40e-59 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096120 | Msa1243340 | 0.942884 | 3.251656e-102 | -8.615850e-47 |
| Msa1143230 | Msa1243340 | 0.929374 | 7.614952e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1243340 | MtrunA17_Chr7g0232011 | 62.759 | 145 | 53 | 1 | 1 | 144 | 1 | 145 | 1.43e-62 | 188 |
| Msa1243340 | MtrunA17_Chr8g0357331 | 88.776 | 98 | 11 | 0 | 47 | 144 | 4 | 101 | 1.21e-60 | 182 |
| Msa1243340 | MtrunA17_Chr7g0231991 | 56.818 | 132 | 49 | 4 | 21 | 144 | 1 | 132 | 8.15e-40 | 130 |
| Msa1243340 | MtrunA17_Chr8g0359071 | 55.140 | 107 | 41 | 3 | 17 | 117 | 19 | 124 | 3.14e-32 | 111 |
| Msa1243340 | MtrunA17_Chr3g0111131 | 48.760 | 121 | 57 | 3 | 1 | 116 | 1 | 121 | 3.96e-31 | 108 |
| Msa1243340 | MtrunA17_Chr3g0090571 | 40.909 | 154 | 81 | 5 | 1 | 144 | 1 | 154 | 4.26e-31 | 108 |
| Msa1243340 | MtrunA17_Chr6g0464071 | 44.444 | 144 | 64 | 5 | 1 | 140 | 1 | 132 | 5.74e-31 | 108 |
| Msa1243340 | MtrunA17_Chr3g0104571 | 41.497 | 147 | 70 | 5 | 1 | 142 | 1 | 136 | 1.03e-28 | 102 |
| Msa1243340 | MtrunA17_Chr6g0456951 | 47.692 | 130 | 62 | 5 | 1 | 124 | 1 | 130 | 3.45e-28 | 101 |
| Msa1243340 | MtrunA17_Chr7g0236801 | 41.611 | 149 | 66 | 7 | 1 | 140 | 1 | 137 | 5.62e-28 | 100 |
| Msa1243340 | MtrunA17_Chr3g0111081 | 43.750 | 144 | 63 | 6 | 1 | 139 | 1 | 131 | 9.92e-28 | 99.8 |
| Msa1243340 | MtrunA17_Chr3g0111071 | 43.056 | 144 | 64 | 6 | 1 | 139 | 1 | 131 | 2.14e-26 | 96.7 |
| Msa1243340 | MtrunA17_Chr3g0111111 | 42.336 | 137 | 65 | 6 | 1 | 125 | 1 | 135 | 3.12e-26 | 96.3 |
| Msa1243340 | MtrunA17_Chr4g0012121 | 40.146 | 137 | 61 | 4 | 18 | 144 | 20 | 145 | 4.07e-26 | 95.9 |
| Msa1243340 | MtrunA17_Chr8g0344801 | 51.648 | 91 | 41 | 2 | 41 | 128 | 6 | 96 | 4.90e-26 | 94.7 |
| Msa1243340 | MtrunA17_Chr3g0111241 | 48.276 | 116 | 54 | 3 | 1 | 110 | 1 | 116 | 3.43e-25 | 93.2 |
| Msa1243340 | MtrunA17_Chr6g0456991 | 47.170 | 106 | 49 | 5 | 18 | 117 | 1 | 105 | 3.90e-25 | 92.4 |
| Msa1243340 | MtrunA17_Chr3g0111351 | 43.448 | 145 | 66 | 5 | 1 | 140 | 9 | 142 | 3.13e-24 | 91.3 |
| Msa1243340 | MtrunA17_Chr8g0344771 | 48.980 | 98 | 46 | 3 | 32 | 125 | 12 | 109 | 5.07e-24 | 90.1 |
| Msa1243340 | MtrunA17_Chr3g0111191 | 44.538 | 119 | 53 | 5 | 1 | 108 | 1 | 117 | 7.18e-24 | 89.4 |
| Msa1243340 | MtrunA17_Chr7g0236791 | 41.497 | 147 | 68 | 7 | 1 | 140 | 1 | 136 | 1.37e-23 | 89.4 |
| Msa1243340 | MtrunA17_Chr8g0344791 | 45.872 | 109 | 54 | 4 | 21 | 125 | 2 | 109 | 6.17e-23 | 87.0 |
| Msa1243340 | MtrunA17_Chr1g0153591 | 40.678 | 118 | 55 | 5 | 1 | 114 | 1 | 107 | 1.52e-20 | 80.9 |
| Msa1243340 | MtrunA17_Chr3g0111281 | 39.130 | 138 | 68 | 4 | 1 | 125 | 1 | 135 | 3.68e-20 | 80.5 |
| Msa1243340 | MtrunA17_Chr3g0111311 | 46.154 | 91 | 48 | 1 | 21 | 110 | 1 | 91 | 1.41e-19 | 77.8 |
| Msa1243340 | MtrunA17_Chr3g0111261 | 41.353 | 133 | 68 | 4 | 1 | 125 | 1 | 131 | 3.64e-19 | 77.8 |
| Msa1243340 | MtrunA17_Chr6g0468601 | 36.434 | 129 | 74 | 5 | 1 | 122 | 1 | 128 | 5.32e-19 | 77.4 |
| Msa1243340 | MtrunA17_Chr3g0111221 | 43.182 | 88 | 47 | 2 | 41 | 125 | 22 | 109 | 1.23e-17 | 73.6 |
| Msa1243340 | MtrunA17_Chr6g0468621 | 37.255 | 153 | 67 | 7 | 1 | 143 | 1 | 134 | 3.71e-17 | 72.8 |
| Msa1243340 | MtrunA17_Chr7g0225821 | 36.441 | 118 | 60 | 4 | 6 | 114 | 9 | 120 | 4.36e-16 | 69.7 |
| Msa1243340 | MtrunA17_Chr3g0111711 | 43.810 | 105 | 47 | 7 | 1 | 95 | 1 | 103 | 1.02e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTGCTTCAACGTTAG+AGG | 0.288036 | 8_2:-29216710 | None:intergenic |
| TAGAAGCATGTGAGGACTTT+TGG | 0.292654 | 8_2:+29216473 | Msa1243340:CDS |
| CCATGTTGGAGCTCAGAATT+AGG | 0.295933 | 8_2:-29216676 | None:intergenic |
| GACTGCATCAAGAAGGGAAC+TGG | 0.387626 | 8_2:+29216634 | Msa1243340:CDS |
| GAATTTGTTTATTGCAAGGT+TGG | 0.400644 | 8_2:-29216749 | None:intergenic |
| ATAGCAGCGGCAGGATTGGC+TGG | 0.400771 | 8_2:+29216541 | Msa1243340:CDS |
| CTAAAAGCCAACTGGTTAGT+TGG | 0.416395 | 8_2:-29216921 | None:intergenic |
| ATTGTTTGTTACGAAAGATC+AGG | 0.437721 | 8_2:-29216160 | None:intergenic |
| TTGAACATATCAGGATTAAG+TGG | 0.466761 | 8_2:-29216830 | None:intergenic |
| AATGATATCTAAAAGCCAAC+TGG | 0.475065 | 8_2:-29216929 | None:intergenic |
| TTGTATAGCAGCGGCAGGAT+TGG | 0.480742 | 8_2:+29216537 | Msa1243340:CDS |
| ACATGCTTCTATCTTCGTCA+TGG | 0.495832 | 8_2:-29216461 | None:intergenic |
| GTGGTGAGATTGACATAAGT+TGG | 0.496117 | 8_2:-29216611 | None:intergenic |
| TATCATTGTAGCAGTGGTTG+TGG | 0.506391 | 8_2:+29216514 | Msa1243340:CDS |
| TGAGGAATTTGTTTATTGCA+AGG | 0.514801 | 8_2:-29216753 | None:intergenic |
| GATTAAGTGGCAATCTCCAC+AGG | 0.518992 | 8_2:-29216817 | None:intergenic |
| TGTGGTTGTATAGCAGCGGC+AGG | 0.525854 | 8_2:+29216532 | Msa1243340:CDS |
| CAATAAATGTAGCATGCGCA+TGG | 0.527725 | 8_2:+29216961 | Msa1243340:three_prime_UTR |
| TAGCTGCATAATATAACGCA+TGG | 0.529544 | 8_2:-29216866 | None:intergenic |
| CATGCTTCTATCTTCGTCAT+GGG | 0.530738 | 8_2:-29216460 | None:intergenic |
| ATTCTGAGCTCCAACATGGC+TGG | 0.533075 | 8_2:+29216680 | Msa1243340:CDS |
| TAGCAGCGGCAGGATTGGCT+GGG | 0.538187 | 8_2:+29216542 | Msa1243340:CDS |
| ACCACAGTTAACTATTACGA+AGG | 0.540571 | 8_2:+29216573 | Msa1243340:CDS |
| TTTCTTTCCAACTAACCAGT+TGG | 0.543280 | 8_2:+29216914 | Msa1243340:three_prime_UTR |
| TGAAGCAGAACAGTACTTCG+AGG | 0.550769 | 8_2:+29216720 | Msa1243340:CDS |
| AATGGATATCATTGTAGCAG+TGG | 0.551719 | 8_2:+29216508 | Msa1243340:CDS |
| GATAAAATACACACAGATTG+TGG | 0.551779 | 8_2:-29216252 | None:intergenic |
| TTCCCTTCTTGATGCAGTCG+TGG | 0.560924 | 8_2:-29216630 | None:intergenic |
| TCACCACGACTGCATCAAGA+AGG | 0.562033 | 8_2:+29216627 | Msa1243340:CDS |
| TCGTAATAGTTAACTGTGGT+CGG | 0.573176 | 8_2:-29216570 | None:intergenic |
| TGGTGAGATTGACATAAGTT+GGG | 0.576584 | 8_2:-29216610 | None:intergenic |
| AGGTAAAACACCAGCCATGT+TGG | 0.578092 | 8_2:-29216690 | None:intergenic |
| TCTTTCTCTCAATCAAACAA+TGG | 0.583206 | 8_2:+29216193 | Msa1243340:exon |
| AACTATTACGAAGGCAGTCG+AGG | 0.583300 | 8_2:+29216582 | Msa1243340:CDS |
| CCTAATTCTGAGCTCCAACA+TGG | 0.593295 | 8_2:+29216676 | Msa1243340:CDS |
| AATAAATGTAGCATGCGCAT+GGG | 0.607650 | 8_2:+29216962 | Msa1243340:three_prime_UTR |
| AGCTGCATAATATAACGCAT+GGG | 0.618597 | 8_2:-29216865 | None:intergenic |
| CACCACGACTGCATCAAGAA+GGG | 0.621548 | 8_2:+29216628 | Msa1243340:CDS |
| TGGAGTAAAAGATATTCTTG+AGG | 0.626728 | 8_2:-29216771 | None:intergenic |
| GACGAAGATAGAAGCATGTG+AGG | 0.630828 | 8_2:+29216465 | Msa1243340:CDS |
| ACTGCATCAAGAAGGGAACT+GGG | 0.650923 | 8_2:+29216635 | Msa1243340:CDS |
| TGGTTGTGGTTGTATAGCAG+CGG | 0.658668 | 8_2:+29216528 | Msa1243340:CDS |
| AGGATTCTTGAAGATGCCTG+TGG | 0.661804 | 8_2:+29216801 | Msa1243340:CDS |
| ATGCTTCTATCTTCGTCATG+GGG | 0.685652 | 8_2:-29216459 | None:intergenic |
| GCCTTCGTAATAGTTAACTG+TGG | 0.719007 | 8_2:-29216574 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTAATTGAAATACT+AGG | - | chr8_2:29216338-29216357 | None:intergenic | 15.0% |
| !!! | AATTTTGTAATTGAAATACT+AGG | - | chr8_2:29216338-29216357 | None:intergenic | 15.0% |
| !!! | TTTTGGTGTACAATATTTAA+TGG | + | chr8_2:29216490-29216509 | Msa1243340:CDS | 20.0% |
| !!! | TTTTGGTGTACAATATTTAA+TGG | + | chr8_2:29216490-29216509 | Msa1243340:CDS | 20.0% |
| !! | AAGAATATCTTTTACTCCAA+TGG | + | chr8_2:29216775-29216794 | Msa1243340:CDS | 25.0% |
| !!! | TTTTGTTTCTTGAACATATC+AGG | - | chr8_2:29216842-29216861 | None:intergenic | 25.0% |
| !! | AAGAATATCTTTTACTCCAA+TGG | + | chr8_2:29216775-29216794 | Msa1243340:CDS | 25.0% |
| !!! | TTTTGTTTCTTGAACATATC+AGG | - | chr8_2:29216842-29216861 | None:intergenic | 25.0% |
| TCTTTCTCTCAATCAAACAA+TGG | + | chr8_2:29216193-29216212 | Msa1243340:exon | 30.0% | |
| GATAAAATACACACAGATTG+TGG | - | chr8_2:29216255-29216274 | None:intergenic | 30.0% | |
| GTGAATCAACTCCAAAATAT+TGG | + | chr8_2:29216312-29216331 | Msa1243340:intron | 30.0% | |
| ! | GAAATACTAGGCCAATATTT+TGG | - | chr8_2:29216326-29216345 | None:intergenic | 30.0% |
| ACATACATCAATGCAACATA+TGG | - | chr8_2:29216385-29216404 | None:intergenic | 30.0% | |
| ! | ATATGTTGCATTGATGTATG+TGG | + | chr8_2:29216384-29216403 | Msa1243340:intron | 30.0% |
| ! | GAATTTGTTTATTGCAAGGT+TGG | - | chr8_2:29216752-29216771 | None:intergenic | 30.0% |
| ! | TGAGGAATTTGTTTATTGCA+AGG | - | chr8_2:29216756-29216775 | None:intergenic | 30.0% |
| TGGAGTAAAAGATATTCTTG+AGG | - | chr8_2:29216774-29216793 | None:intergenic | 30.0% | |
| ! | ATCTTTTACTCCAATGGAAA+AGG | + | chr8_2:29216781-29216800 | Msa1243340:CDS | 30.0% |
| TTGAACATATCAGGATTAAG+TGG | - | chr8_2:29216833-29216852 | None:intergenic | 30.0% | |
| AATGATATCTAAAAGCCAAC+TGG | - | chr8_2:29216932-29216951 | None:intergenic | 30.0% | |
| ! | ATTGTTTGTTACGAAAGATC+AGG | - | chr8_2:29216163-29216182 | None:intergenic | 30.0% |
| TCTTTCTCTCAATCAAACAA+TGG | + | chr8_2:29216193-29216212 | Msa1243340:exon | 30.0% | |
| GATAAAATACACACAGATTG+TGG | - | chr8_2:29216255-29216274 | None:intergenic | 30.0% | |
| GTGAATCAACTCCAAAATAT+TGG | + | chr8_2:29216312-29216331 | Msa1243340:intron | 30.0% | |
| ! | GAAATACTAGGCCAATATTT+TGG | - | chr8_2:29216326-29216345 | None:intergenic | 30.0% |
| ACATACATCAATGCAACATA+TGG | - | chr8_2:29216385-29216404 | None:intergenic | 30.0% | |
| ! | ATATGTTGCATTGATGTATG+TGG | + | chr8_2:29216384-29216403 | Msa1243340:intron | 30.0% |
| ! | GAATTTGTTTATTGCAAGGT+TGG | - | chr8_2:29216752-29216771 | None:intergenic | 30.0% |
| ! | TGAGGAATTTGTTTATTGCA+AGG | - | chr8_2:29216756-29216775 | None:intergenic | 30.0% |
| TGGAGTAAAAGATATTCTTG+AGG | - | chr8_2:29216774-29216793 | None:intergenic | 30.0% | |
| ! | ATCTTTTACTCCAATGGAAA+AGG | + | chr8_2:29216781-29216800 | Msa1243340:CDS | 30.0% |
| TTGAACATATCAGGATTAAG+TGG | - | chr8_2:29216833-29216852 | None:intergenic | 30.0% | |
| AATGATATCTAAAAGCCAAC+TGG | - | chr8_2:29216932-29216951 | None:intergenic | 30.0% | |
| CATATGGTATGACAGTTGAT+CGG | - | chr8_2:29216369-29216388 | None:intergenic | 35.0% | |
| AATGGATATCATTGTAGCAG+TGG | + | chr8_2:29216508-29216527 | Msa1243340:CDS | 35.0% | |
| TCGTAATAGTTAACTGTGGT+CGG | - | chr8_2:29216573-29216592 | None:intergenic | 35.0% | |
| ACCACAGTTAACTATTACGA+AGG | + | chr8_2:29216573-29216592 | Msa1243340:CDS | 35.0% | |
| TGGTGAGATTGACATAAGTT+GGG | - | chr8_2:29216613-29216632 | None:intergenic | 35.0% | |
| ! | CTTCAAGAATCCTTTTCCAT+TGG | - | chr8_2:29216794-29216813 | None:intergenic | 35.0% |
| AGCTGCATAATATAACGCAT+GGG | - | chr8_2:29216868-29216887 | None:intergenic | 35.0% | |
| TAGCTGCATAATATAACGCA+TGG | - | chr8_2:29216869-29216888 | None:intergenic | 35.0% | |
| TTTCTTTCCAACTAACCAGT+TGG | + | chr8_2:29216914-29216933 | Msa1243340:three_prime_UTR | 35.0% | |
| AATAAATGTAGCATGCGCAT+GGG | + | chr8_2:29216962-29216981 | Msa1243340:three_prime_UTR | 35.0% | |
| CATATGGTATGACAGTTGAT+CGG | - | chr8_2:29216369-29216388 | None:intergenic | 35.0% | |
| AATGGATATCATTGTAGCAG+TGG | + | chr8_2:29216508-29216527 | Msa1243340:CDS | 35.0% | |
| TCGTAATAGTTAACTGTGGT+CGG | - | chr8_2:29216573-29216592 | None:intergenic | 35.0% | |
| ACCACAGTTAACTATTACGA+AGG | + | chr8_2:29216573-29216592 | Msa1243340:CDS | 35.0% | |
| TGGTGAGATTGACATAAGTT+GGG | - | chr8_2:29216613-29216632 | None:intergenic | 35.0% | |
| ! | CTTCAAGAATCCTTTTCCAT+TGG | - | chr8_2:29216794-29216813 | None:intergenic | 35.0% |
| AGCTGCATAATATAACGCAT+GGG | - | chr8_2:29216868-29216887 | None:intergenic | 35.0% | |
| TAGCTGCATAATATAACGCA+TGG | - | chr8_2:29216869-29216888 | None:intergenic | 35.0% | |
| TTTCTTTCCAACTAACCAGT+TGG | + | chr8_2:29216914-29216933 | Msa1243340:three_prime_UTR | 35.0% | |
| AATAAATGTAGCATGCGCAT+GGG | + | chr8_2:29216962-29216981 | Msa1243340:three_prime_UTR | 35.0% | |
| ATGCTTCTATCTTCGTCATG+GGG | - | chr8_2:29216462-29216481 | None:intergenic | 40.0% | |
| CATGCTTCTATCTTCGTCAT+GGG | - | chr8_2:29216463-29216482 | None:intergenic | 40.0% | |
| ACATGCTTCTATCTTCGTCA+TGG | - | chr8_2:29216464-29216483 | None:intergenic | 40.0% | |
| !! | TAGAAGCATGTGAGGACTTT+TGG | + | chr8_2:29216473-29216492 | Msa1243340:CDS | 40.0% |
| TATCATTGTAGCAGTGGTTG+TGG | + | chr8_2:29216514-29216533 | Msa1243340:CDS | 40.0% | |
| GCCTTCGTAATAGTTAACTG+TGG | - | chr8_2:29216577-29216596 | None:intergenic | 40.0% | |
| GTGGTGAGATTGACATAAGT+TGG | - | chr8_2:29216614-29216633 | None:intergenic | 40.0% | |
| CTAAAAGCCAACTGGTTAGT+TGG | - | chr8_2:29216924-29216943 | None:intergenic | 40.0% | |
| CAATAAATGTAGCATGCGCA+TGG | + | chr8_2:29216961-29216980 | Msa1243340:three_prime_UTR | 40.0% | |
| ATGCTTCTATCTTCGTCATG+GGG | - | chr8_2:29216462-29216481 | None:intergenic | 40.0% | |
| CATGCTTCTATCTTCGTCAT+GGG | - | chr8_2:29216463-29216482 | None:intergenic | 40.0% | |
| ACATGCTTCTATCTTCGTCA+TGG | - | chr8_2:29216464-29216483 | None:intergenic | 40.0% | |
| !! | TAGAAGCATGTGAGGACTTT+TGG | + | chr8_2:29216473-29216492 | Msa1243340:CDS | 40.0% |
| TATCATTGTAGCAGTGGTTG+TGG | + | chr8_2:29216514-29216533 | Msa1243340:CDS | 40.0% | |
| GCCTTCGTAATAGTTAACTG+TGG | - | chr8_2:29216577-29216596 | None:intergenic | 40.0% | |
| GTGGTGAGATTGACATAAGT+TGG | - | chr8_2:29216614-29216633 | None:intergenic | 40.0% | |
| CTAAAAGCCAACTGGTTAGT+TGG | - | chr8_2:29216924-29216943 | None:intergenic | 40.0% | |
| CAATAAATGTAGCATGCGCA+TGG | + | chr8_2:29216961-29216980 | Msa1243340:three_prime_UTR | 40.0% | |
| ! | GACGAAGATAGAAGCATGTG+AGG | + | chr8_2:29216465-29216484 | Msa1243340:CDS | 45.0% |
| TGGTTGTGGTTGTATAGCAG+CGG | + | chr8_2:29216528-29216547 | Msa1243340:CDS | 45.0% | |
| AACTATTACGAAGGCAGTCG+AGG | + | chr8_2:29216582-29216601 | Msa1243340:CDS | 45.0% | |
| ACTGCATCAAGAAGGGAACT+GGG | + | chr8_2:29216635-29216654 | Msa1243340:CDS | 45.0% | |
| CCATGTTGGAGCTCAGAATT+AGG | - | chr8_2:29216679-29216698 | None:intergenic | 45.0% | |
| CCTAATTCTGAGCTCCAACA+TGG | + | chr8_2:29216676-29216695 | Msa1243340:CDS | 45.0% | |
| AGGTAAAACACCAGCCATGT+TGG | - | chr8_2:29216693-29216712 | None:intergenic | 45.0% | |
| CTGTTCTGCTTCAACGTTAG+AGG | - | chr8_2:29216713-29216732 | None:intergenic | 45.0% | |
| TGAAGCAGAACAGTACTTCG+AGG | + | chr8_2:29216720-29216739 | Msa1243340:CDS | 45.0% | |
| AGGATTCTTGAAGATGCCTG+TGG | + | chr8_2:29216801-29216820 | Msa1243340:CDS | 45.0% | |
| GATTAAGTGGCAATCTCCAC+AGG | - | chr8_2:29216820-29216839 | None:intergenic | 45.0% | |
| ! | GACGAAGATAGAAGCATGTG+AGG | + | chr8_2:29216465-29216484 | Msa1243340:CDS | 45.0% |
| TGGTTGTGGTTGTATAGCAG+CGG | + | chr8_2:29216528-29216547 | Msa1243340:CDS | 45.0% | |
| AACTATTACGAAGGCAGTCG+AGG | + | chr8_2:29216582-29216601 | Msa1243340:CDS | 45.0% | |
| ACTGCATCAAGAAGGGAACT+GGG | + | chr8_2:29216635-29216654 | Msa1243340:CDS | 45.0% | |
| CCATGTTGGAGCTCAGAATT+AGG | - | chr8_2:29216679-29216698 | None:intergenic | 45.0% | |
| CCTAATTCTGAGCTCCAACA+TGG | + | chr8_2:29216676-29216695 | Msa1243340:CDS | 45.0% | |
| AGGTAAAACACCAGCCATGT+TGG | - | chr8_2:29216693-29216712 | None:intergenic | 45.0% | |
| CTGTTCTGCTTCAACGTTAG+AGG | - | chr8_2:29216713-29216732 | None:intergenic | 45.0% | |
| TGAAGCAGAACAGTACTTCG+AGG | + | chr8_2:29216720-29216739 | Msa1243340:CDS | 45.0% | |
| AGGATTCTTGAAGATGCCTG+TGG | + | chr8_2:29216801-29216820 | Msa1243340:CDS | 45.0% | |
| GATTAAGTGGCAATCTCCAC+AGG | - | chr8_2:29216820-29216839 | None:intergenic | 45.0% | |
| TTGTATAGCAGCGGCAGGAT+TGG | + | chr8_2:29216537-29216556 | Msa1243340:CDS | 50.0% | |
| TCACCACGACTGCATCAAGA+AGG | + | chr8_2:29216627-29216646 | Msa1243340:CDS | 50.0% | |
| CACCACGACTGCATCAAGAA+GGG | + | chr8_2:29216628-29216647 | Msa1243340:CDS | 50.0% | |
| TTCCCTTCTTGATGCAGTCG+TGG | - | chr8_2:29216633-29216652 | None:intergenic | 50.0% | |
| GACTGCATCAAGAAGGGAAC+TGG | + | chr8_2:29216634-29216653 | Msa1243340:CDS | 50.0% | |
| ATTCTGAGCTCCAACATGGC+TGG | + | chr8_2:29216680-29216699 | Msa1243340:CDS | 50.0% | |
| TTGTATAGCAGCGGCAGGAT+TGG | + | chr8_2:29216537-29216556 | Msa1243340:CDS | 50.0% | |
| TCACCACGACTGCATCAAGA+AGG | + | chr8_2:29216627-29216646 | Msa1243340:CDS | 50.0% | |
| CACCACGACTGCATCAAGAA+GGG | + | chr8_2:29216628-29216647 | Msa1243340:CDS | 50.0% | |
| TTCCCTTCTTGATGCAGTCG+TGG | - | chr8_2:29216633-29216652 | None:intergenic | 50.0% | |
| GACTGCATCAAGAAGGGAAC+TGG | + | chr8_2:29216634-29216653 | Msa1243340:CDS | 50.0% | |
| ATTCTGAGCTCCAACATGGC+TGG | + | chr8_2:29216680-29216699 | Msa1243340:CDS | 50.0% | |
| TGTGGTTGTATAGCAGCGGC+AGG | + | chr8_2:29216532-29216551 | Msa1243340:CDS | 55.0% | |
| TGTGGTTGTATAGCAGCGGC+AGG | + | chr8_2:29216532-29216551 | Msa1243340:CDS | 55.0% | |
| ! | ATAGCAGCGGCAGGATTGGC+TGG | + | chr8_2:29216541-29216560 | Msa1243340:CDS | 60.0% |
| !! | TAGCAGCGGCAGGATTGGCT+GGG | + | chr8_2:29216542-29216561 | Msa1243340:CDS | 60.0% |
| ! | ATAGCAGCGGCAGGATTGGC+TGG | + | chr8_2:29216541-29216560 | Msa1243340:CDS | 60.0% |
| !! | TAGCAGCGGCAGGATTGGCT+GGG | + | chr8_2:29216542-29216561 | Msa1243340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 29216161 | 29217004 | 29216161 | ID=Msa1243340;Name=Msa1243340 |
| chr8_2 | mRNA | 29216161 | 29217004 | 29216161 | ID=Msa1243340-mRNA-1;Parent=Msa1243340;Name=Msa1243340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=51|1|1|1|0|0|2|167|144 |
| chr8_2 | exon | 29216161 | 29216260 | 29216161 | ID=Msa1243340-mRNA-1:exon:9994;Parent=Msa1243340-mRNA-1 |
| chr8_2 | exon | 29216452 | 29217004 | 29216452 | ID=Msa1243340-mRNA-1:exon:9995;Parent=Msa1243340-mRNA-1 |
| chr8_2 | five_prime_UTR | 29216161 | 29216211 | 29216161 | ID=Msa1243340-mRNA-1:five_prime_utr;Parent=Msa1243340-mRNA-1 |
| chr8_2 | CDS | 29216212 | 29216260 | 29216212 | ID=Msa1243340-mRNA-1:cds;Parent=Msa1243340-mRNA-1 |
| chr8_2 | CDS | 29216452 | 29216837 | 29216452 | ID=Msa1243340-mRNA-1:cds;Parent=Msa1243340-mRNA-1 |
| chr8_2 | three_prime_UTR | 29216838 | 29217004 | 29216838 | ID=Msa1243340-mRNA-1:three_prime_utr;Parent=Msa1243340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
