Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143720 | XP_003630258.2 | 95.695 | 511 | 22 | 0 | 1 | 511 | 152 | 662 | 0.0 | 1001 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143720 | sp|Q8CTA4|CSD_STAES | 25.676 | 296 | 187 | 9 | 5 | 296 | 75 | 341 | 2.12e-16 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143720 | G7LE12 | 95.695 | 511 | 22 | 0 | 1 | 511 | 152 | 662 | 0.0 | 1001 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0705510 | Msa1143720 | 0.869133 | 3.888994e-66 | -8.615850e-47 |
| Msa1143720 | Msa1369070 | 0.961350 | 1.339014e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143720 | MtrunA17_Chr8g0384181 | 95.695 | 511 | 22 | 0 | 1 | 511 | 152 | 662 | 0.0 | 1001 |
| Msa1143720 | MtrunA17_Chr8g0384171 | 70.019 | 517 | 133 | 2 | 1 | 511 | 135 | 635 | 0.0 | 762 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 125 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCCCAACATCAAGATTT+TGG | 0.137304 | 7_4:-19539862 | Msa1143720:CDS |
| TGAGAGCATCGTTAGCATTT+TGG | 0.175651 | 7_4:-19539965 | Msa1143720:CDS |
| AACATAGAAGAGAGGGAAAA+TGG | 0.180904 | 7_4:-19540014 | Msa1143720:CDS |
| CTTAATTTGTGGCAAGAAAT+AGG | 0.183307 | 7_4:-19539735 | Msa1143720:CDS |
| CAACATTTCTAATCATTTAC+TGG | 0.236880 | 7_4:-19539154 | Msa1143720:CDS |
| CTTAGTCCACATAAGTTTCT+TGG | 0.265340 | 7_4:-19540355 | Msa1143720:CDS |
| CATGAAGCGGCTTGCCTCTC+TGG | 0.274510 | 7_4:+19539709 | None:intergenic |
| ATCATTCAAATCTACTTTCT+TGG | 0.276230 | 7_4:-19540747 | Msa1143720:CDS |
| TGGTCGATTAGTATCTTTAT+AGG | 0.276407 | 7_4:+19540639 | None:intergenic |
| TCACCTTCACTCATGTAATA+AGG | 0.322294 | 7_4:+19539318 | None:intergenic |
| CTCACTGTTTGGATTATTTG+AGG | 0.323804 | 7_4:+19539984 | None:intergenic |
| CTAACGATGCTCTCACTGTT+TGG | 0.339477 | 7_4:+19539973 | None:intergenic |
| TCTGCTTGTAGTAATGTAAC+TGG | 0.341389 | 7_4:-19540601 | Msa1143720:CDS |
| GAGGCTACTAGCAATATATT+TGG | 0.341891 | 7_4:+19539059 | None:intergenic |
| TGGCCACATCTAAATAAGTT+TGG | 0.352505 | 7_4:+19539079 | None:intergenic |
| TTTCCCAAAATCTTGATGTT+GGG | 0.363233 | 7_4:+19539858 | None:intergenic |
| AAAAGTACTCCCGGAGAATC+AGG | 0.364713 | 7_4:+19540328 | None:intergenic |
| TTAATTTGTGGCAAGAAATA+GGG | 0.366674 | 7_4:-19539734 | Msa1143720:CDS |
| ATCAATTGATGAGCAAGAAT+TGG | 0.366969 | 7_4:+19539785 | None:intergenic |
| TGATGAAGGGTTGCTTGATA+TGG | 0.373761 | 7_4:-19540686 | Msa1143720:CDS |
| GGGAATATTGCAGGAAGAAA+TGG | 0.375317 | 7_4:-19539019 | Msa1143720:CDS |
| CTCGAGCTTGAATGCCAAAA+AGG | 0.376314 | 7_4:+19539658 | None:intergenic |
| ATCCTTTCTCTAACAATAGA+AGG | 0.381228 | 7_4:+19540826 | None:intergenic |
| GATACTAATCGACCATTGTT+AGG | 0.382968 | 7_4:-19540631 | Msa1143720:CDS |
| CAGAGAGGCAAGCCGCTTCA+TGG | 0.383600 | 7_4:-19539708 | Msa1143720:CDS |
| ACTTTCTTGGAGGCAGAGTT+TGG | 0.384563 | 7_4:-19540734 | Msa1143720:CDS |
| TTGGCAGAGGTTGTAGAGAT+TGG | 0.397077 | 7_4:-19540715 | Msa1143720:CDS |
| GTGGAGATTGACATGGGATC+AGG | 0.397505 | 7_4:-19540406 | Msa1143720:CDS |
| TCTTGGTGGTCCTGATTCTC+CGG | 0.398856 | 7_4:-19540338 | Msa1143720:CDS |
| TCCACCTCAGGGAATATTGC+AGG | 0.399399 | 7_4:-19539028 | Msa1143720:CDS |
| ATTCCCTGAGGTGGAAACTT+AGG | 0.403632 | 7_4:+19539036 | None:intergenic |
| TCACTGTTTGGATTATTTGA+GGG | 0.410256 | 7_4:+19539985 | None:intergenic |
| CGAGGAGGGTGTGCTTGTGC+TGG | 0.414961 | 7_4:-19539639 | Msa1143720:CDS |
| TTAAGCAATGCTGCAACAAA+AGG | 0.418637 | 7_4:+19539684 | None:intergenic |
| TATATAGAGGAAAGAACCTT+TGG | 0.422238 | 7_4:+19539250 | None:intergenic |
| GTTTCCCAAAATCTTGATGT+TGG | 0.425618 | 7_4:+19539857 | None:intergenic |
| AAAAGACTTCAAGAAGTAAT+GGG | 0.426268 | 7_4:-19540859 | Msa1143720:CDS |
| ACTTCCATTCCTCAAGTTGA+AGG | 0.427444 | 7_4:+19539227 | None:intergenic |
| CAAAAGACTTCAAGAAGTAA+TGG | 0.430568 | 7_4:-19540860 | Msa1143720:CDS |
| ATGGGATCAGGGAGGAATGA+TGG | 0.431082 | 7_4:-19540394 | Msa1143720:CDS |
| TCCGCCTCCACAAGTGGATG+GGG | 0.435075 | 7_4:+19540270 | None:intergenic |
| ACATAGAAGAGAGGGAAAAT+GGG | 0.439075 | 7_4:-19540013 | Msa1143720:CDS |
| CCTCCCTAAGTTTCCACCTC+AGG | 0.441495 | 7_4:-19539040 | Msa1143720:CDS |
| GCAATCATCTTCTGTGGCTC+AGG | 0.443522 | 7_4:-19540898 | Msa1143720:CDS |
| CTTGGTGGTCCTGATTCTCC+GGG | 0.449267 | 7_4:-19540337 | Msa1143720:CDS |
| TTTGTTTAGTGGTCCGTATG+TGG | 0.459507 | 7_4:-19540425 | Msa1143720:intron |
| TTCCCTGAGGTGGAAACTTA+GGG | 0.463100 | 7_4:+19539037 | None:intergenic |
| GAGATTGGCTTAGATGATGA+AGG | 0.464045 | 7_4:-19540700 | Msa1143720:CDS |
| AACTCTAAAGTAGAGGATAG+TGG | 0.466387 | 7_4:+19538993 | None:intergenic |
| GCCTTAGCAAAGAAGAAAGA+TGG | 0.468675 | 7_4:-19540795 | Msa1143720:CDS |
| TTCCGCCTCCACAAGTGGAT+GGG | 0.469410 | 7_4:+19540269 | None:intergenic |
| TGTCAATGCATTCGATGAAA+AGG | 0.469733 | 7_4:-19540236 | Msa1143720:intron |
| CCCATCTTTCTTCTTTGCTA+AGG | 0.470399 | 7_4:+19540794 | None:intergenic |
| CACTGTTTGGATTATTTGAG+GGG | 0.470973 | 7_4:+19539986 | None:intergenic |
| TGCCTTCTATTGTTAGAGAA+AGG | 0.471268 | 7_4:-19540828 | Msa1143720:CDS |
| CTCAAGTTGAAGGTATATAG+AGG | 0.487801 | 7_4:+19539237 | None:intergenic |
| TCAACTTGAGGAATGGAAGT+TGG | 0.488378 | 7_4:-19539224 | Msa1143720:CDS |
| TTCCCAAAATCTTGATGTTG+GGG | 0.488915 | 7_4:+19539859 | None:intergenic |
| TTGGAGGCAGAGTTTGGCAG+AGG | 0.492636 | 7_4:-19540728 | Msa1143720:CDS |
| CTCTATATACCTTCAACTTG+AGG | 0.494203 | 7_4:-19539236 | Msa1143720:CDS |
| GAGTACATTAAGAAATGCTT+AGG | 0.500122 | 7_4:-19540937 | Msa1143720:CDS |
| CAAGAAACTTATGTGGACTA+AGG | 0.500580 | 7_4:+19540356 | None:intergenic |
| ATTCAAATCTACTTTCTTGG+AGG | 0.501194 | 7_4:-19540744 | Msa1143720:CDS |
| TGTGCTTGTGCTGGACCTTA+CGG | 0.504318 | 7_4:-19539630 | Msa1143720:CDS |
| CTCCCTAAGTTTCCACCTCA+GGG | 0.505226 | 7_4:-19539039 | Msa1143720:CDS |
| GACAGTTCCGCCTCCACAAG+TGG | 0.505419 | 7_4:+19540264 | None:intergenic |
| ACTCTAAAGTAGAGGATAGT+GGG | 0.508430 | 7_4:+19538994 | None:intergenic |
| GGCTATATCGGAGTAAAACC+TGG | 0.510918 | 7_4:-19539360 | Msa1143720:CDS |
| TGGGATCAGGGAGGAATGAT+GGG | 0.513684 | 7_4:-19540393 | Msa1143720:CDS |
| GTTCCGCCTCCACAAGTGGA+TGG | 0.514497 | 7_4:+19540268 | None:intergenic |
| CAAAATCTTGATGTTGGGGT+TGG | 0.516688 | 7_4:+19539863 | None:intergenic |
| AAACTAACTCTTGTCCATCC+AGG | 0.525967 | 7_4:+19539342 | None:intergenic |
| AGTCCACATAAGTTTCTTGG+TGG | 0.530242 | 7_4:-19540352 | Msa1143720:CDS |
| AATGAAGACTGAGAAATTTG+AGG | 0.532113 | 7_4:-19539199 | Msa1143720:CDS |
| AACATTTCTAATCATTTACT+GGG | 0.533000 | 7_4:-19539153 | Msa1143720:CDS |
| TCCTGCAATATTCCCTGAGG+TGG | 0.536985 | 7_4:+19539027 | None:intergenic |
| CATGGAGAACATAGAAGAGA+GGG | 0.537066 | 7_4:-19540021 | Msa1143720:CDS |
| AGCTTTGAAGCTGCAACTTG+AGG | 0.539004 | 7_4:-19540662 | Msa1143720:CDS |
| TGGAGATTGACATGGGATCA+GGG | 0.548198 | 7_4:-19540405 | Msa1143720:CDS |
| ATTAAGAAATGCTTAGGTGG+TGG | 0.549911 | 7_4:-19540931 | Msa1143720:CDS |
| TTTCCTTATTACATGAGTGA+AGG | 0.550089 | 7_4:-19539321 | Msa1143720:CDS |
| TAGATTTGAATGATGCTCAT+GGG | 0.551631 | 7_4:+19540756 | None:intergenic |
| AGATTGGCTTAGATGATGAA+GGG | 0.558204 | 7_4:-19540699 | Msa1143720:CDS |
| TAAGCAATGCTGCAACAAAA+GGG | 0.561644 | 7_4:+19539685 | None:intergenic |
| TATACCTTCAACTTGAGGAA+TGG | 0.562439 | 7_4:-19539231 | Msa1143720:CDS |
| TTGTTCATCAAAAGTACTCC+CGG | 0.569129 | 7_4:+19540319 | None:intergenic |
| TGATGAACAATGCTTTGTAT+CGG | 0.569506 | 7_4:-19540306 | Msa1143720:CDS |
| TTGGCATTCAAGCTCGAGGA+GGG | 0.569666 | 7_4:-19539653 | Msa1143720:CDS |
| GAACCAAACTTATTTAGATG+TGG | 0.572778 | 7_4:-19539082 | Msa1143720:CDS |
| TTGAGTAATTCGTGTCCGTA+AGG | 0.573220 | 7_4:+19539615 | None:intergenic |
| GTAGATTTGAATGATGCTCA+TGG | 0.576542 | 7_4:+19540755 | None:intergenic |
| AGTTGTAGCCAAGAACATGA+AGG | 0.580235 | 7_4:-19539762 | Msa1143720:CDS |
| AATGATGCAATCATCTTCTG+TGG | 0.582378 | 7_4:-19540904 | Msa1143720:CDS |
| GAAATTTGAGGCAGTAAACA+AGG | 0.585681 | 7_4:-19539187 | Msa1143720:CDS |
| CCCATGTCAATCTCCACATA+CGG | 0.591025 | 7_4:+19540412 | None:intergenic |
| CCTTAGCAAAGAAGAAAGAT+GGG | 0.592823 | 7_4:-19540794 | Msa1143720:CDS |
| TGAGAGTATAGCTTGTCGCT+TGG | 0.598417 | 7_4:+19539827 | None:intergenic |
| TACATTAAGAAATGCTTAGG+TGG | 0.598713 | 7_4:-19540934 | Msa1143720:CDS |
| GTTGTAGCCAAGAACATGAA+GGG | 0.601267 | 7_4:-19539761 | Msa1143720:CDS |
| GGACCACCAAGAAACTTATG+TGG | 0.601552 | 7_4:+19540349 | None:intergenic |
| ATATCGGAGTAAAACCTGGA+TGG | 0.602940 | 7_4:-19539356 | Msa1143720:CDS |
| AATGTAGGACACATTATACA+TGG | 0.608096 | 7_4:-19540039 | Msa1143720:intron |
| TATCAGATCAGCTGTTCAAG+AGG | 0.608116 | 7_4:-19539568 | Msa1143720:intron |
| CATAGAAGAGAGGGAAAATG+GGG | 0.611369 | 7_4:-19540012 | Msa1143720:CDS |
| GCAACAAAAGGGCCATGAAG+CGG | 0.613749 | 7_4:+19539696 | None:intergenic |
| TCTTCCTGCAATATTCCCTG+AGG | 0.621603 | 7_4:+19539024 | None:intergenic |
| AATAAACATTGATGTTGATG+TGG | 0.627365 | 7_4:-19539115 | Msa1143720:CDS |
| AAATTCAAACTCTAAAGTAG+AGG | 0.632298 | 7_4:+19538986 | None:intergenic |
| ACATGGAGAACATAGAAGAG+AGG | 0.633521 | 7_4:-19540022 | Msa1143720:CDS |
| CCGCCTCCACAAGTGGATGG+GGG | 0.634171 | 7_4:+19540271 | None:intergenic |
| TTGTAGCCAAGAACATGAAG+GGG | 0.640366 | 7_4:-19539760 | Msa1143720:CDS |
| TTTGGCATTCAAGCTCGAGG+AGG | 0.643266 | 7_4:-19539654 | Msa1143720:CDS |
| AGATTTGAATGATGCTCATG+GGG | 0.647917 | 7_4:+19540757 | None:intergenic |
| ATGTTGATGTGGCTGTGAGA+AGG | 0.654701 | 7_4:-19539104 | Msa1143720:CDS |
| AGAACAACTGTACATTAACA+AGG | 0.663044 | 7_4:-19539904 | Msa1143720:CDS |
| TCCGTATGTGGAGATTGACA+TGG | 0.668606 | 7_4:-19540413 | Msa1143720:CDS |
| TGTAGCCAAGAACATGAAGG+GGG | 0.677946 | 7_4:-19539759 | Msa1143720:CDS |
| GCAGAGAAAGATCCTAACAA+TGG | 0.679049 | 7_4:+19540619 | None:intergenic |
| TAGCAAAGAAGAAAGATGGG+TGG | 0.689815 | 7_4:-19540791 | Msa1143720:CDS |
| CCTGAGGTGGAAACTTAGGG+AGG | 0.697673 | 7_4:+19539040 | None:intergenic |
| CCGTATGTGGAGATTGACAT+GGG | 0.708084 | 7_4:-19540412 | Msa1143720:CDS |
| GTAGCCAAGAACATGAAGGG+GGG | 0.736383 | 7_4:-19539758 | Msa1143720:CDS |
| CAAGAAATAGGGAACCAGAG+AGG | 0.736727 | 7_4:-19539723 | Msa1143720:CDS |
| ATAGAAGAGAGGGAAAATGG+GGG | 0.783358 | 7_4:-19540011 | Msa1143720:CDS |
| AGATTGACATGGGATCAGGG+AGG | 0.805610 | 7_4:-19540402 | Msa1143720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTTCATTGAATATA+AGG | + | chr7_4:19539863-19539882 | None:intergenic | 10.0% |
| !! | ATAAAATTTCATTGAATATA+AGG | + | chr7_4:19539863-19539882 | None:intergenic | 10.0% |
| !! | ATTTAAGCTAAAAAATATCA+AGG | + | chr7_4:19540421-19540440 | None:intergenic | 15.0% |
| !!! | ACTAAAATTGTTTATTGTTT+TGG | - | chr7_4:19540548-19540567 | Msa1143720:CDS | 15.0% |
| !! | ATTTAAGCTAAAAAATATCA+AGG | + | chr7_4:19540421-19540440 | None:intergenic | 15.0% |
| !!! | ACTAAAATTGTTTATTGTTT+TGG | - | chr7_4:19540548-19540567 | Msa1143720:CDS | 15.0% |
| !!! | TTAATTTGATTTGTCAATTG+TGG | - | chr7_4:19539453-19539472 | Msa1143720:intron | 20.0% |
| !!! | TTTGATGACATAGTAATTAA+TGG | - | chr7_4:19539495-19539514 | Msa1143720:intron | 20.0% |
| !!! | GTGAAAGTTTTTTTGTTAAT+CGG | - | chr7_4:19539745-19539764 | Msa1143720:CDS | 20.0% |
| !!! | TTTCTTTTAAATGCTTTGAA+AGG | + | chr7_4:19540527-19540546 | None:intergenic | 20.0% |
| !! | AACATTTCTAATCATTTACT+GGG | - | chr7_4:19540792-19540811 | Msa1143720:CDS | 20.0% |
| !!! | TTAATTTGATTTGTCAATTG+TGG | - | chr7_4:19539453-19539472 | Msa1143720:intron | 20.0% |
| !!! | TTTGATGACATAGTAATTAA+TGG | - | chr7_4:19539495-19539514 | Msa1143720:intron | 20.0% |
| !!! | GTGAAAGTTTTTTTGTTAAT+CGG | - | chr7_4:19539745-19539764 | Msa1143720:CDS | 20.0% |
| !!! | TTTCTTTTAAATGCTTTGAA+AGG | + | chr7_4:19540527-19540546 | None:intergenic | 20.0% |
| !! | AACATTTCTAATCATTTACT+GGG | - | chr7_4:19540792-19540811 | Msa1143720:CDS | 20.0% |
| ! | AAAAGACTTCAAGAAGTAAT+GGG | - | chr7_4:19539086-19539105 | Msa1143720:CDS | 25.0% |
| ! | ATCATTCAAATCTACTTTCT+TGG | - | chr7_4:19539198-19539217 | Msa1143720:CDS | 25.0% |
| !!! | ATGCTTTTTCACAAATACAA+AGG | - | chr7_4:19539395-19539414 | Msa1143720:intron | 25.0% |
| !!! | AATTAATGGCTTTTGTTTAG+TGG | - | chr7_4:19539509-19539528 | Msa1143720:intron | 25.0% |
| !!! | TTAAATTAAAAGTACTCCCT+AGG | + | chr7_4:19539823-19539842 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGGCAAGAAATA+GGG | - | chr7_4:19540211-19540230 | Msa1143720:intron | 25.0% |
| !! | ATTTTTACTCTATGTACTCA+TGG | - | chr7_4:19540474-19540493 | Msa1143720:intron | 25.0% |
| !!! | GTTTATTGTTTTGGATCTTT+TGG | - | chr7_4:19540557-19540576 | Msa1143720:CDS | 25.0% |
| !!! | ATAGAGTTTTTAGCTGTATA+TGG | - | chr7_4:19540672-19540691 | Msa1143720:CDS | 25.0% |
| ! | CAACATTTCTAATCATTTAC+TGG | - | chr7_4:19540791-19540810 | Msa1143720:CDS | 25.0% |
| ! | AATAAACATTGATGTTGATG+TGG | - | chr7_4:19540830-19540849 | Msa1143720:CDS | 25.0% |
| ! | AAAAGACTTCAAGAAGTAAT+GGG | - | chr7_4:19539086-19539105 | Msa1143720:CDS | 25.0% |
| ! | ATCATTCAAATCTACTTTCT+TGG | - | chr7_4:19539198-19539217 | Msa1143720:CDS | 25.0% |
| !!! | ATGCTTTTTCACAAATACAA+AGG | - | chr7_4:19539395-19539414 | Msa1143720:intron | 25.0% |
| !!! | AATTAATGGCTTTTGTTTAG+TGG | - | chr7_4:19539509-19539528 | Msa1143720:intron | 25.0% |
| !!! | TTAAATTAAAAGTACTCCCT+AGG | + | chr7_4:19539823-19539842 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGGCAAGAAATA+GGG | - | chr7_4:19540211-19540230 | Msa1143720:intron | 25.0% |
| !! | ATTTTTACTCTATGTACTCA+TGG | - | chr7_4:19540474-19540493 | Msa1143720:intron | 25.0% |
| !!! | GTTTATTGTTTTGGATCTTT+TGG | - | chr7_4:19540557-19540576 | Msa1143720:CDS | 25.0% |
| !!! | ATAGAGTTTTTAGCTGTATA+TGG | - | chr7_4:19540672-19540691 | Msa1143720:CDS | 25.0% |
| ! | CAACATTTCTAATCATTTAC+TGG | - | chr7_4:19540791-19540810 | Msa1143720:CDS | 25.0% |
| ! | AATAAACATTGATGTTGATG+TGG | - | chr7_4:19540830-19540849 | Msa1143720:CDS | 25.0% |
| GAGTACATTAAGAAATGCTT+AGG | - | chr7_4:19539008-19539027 | Msa1143720:CDS | 30.0% | |
| TACATTAAGAAATGCTTAGG+TGG | - | chr7_4:19539011-19539030 | Msa1143720:CDS | 30.0% | |
| ! | TACTTCTTGAAGTCTTTTGA+TGG | + | chr7_4:19539084-19539103 | None:intergenic | 30.0% |
| CAAAAGACTTCAAGAAGTAA+TGG | - | chr7_4:19539085-19539104 | Msa1143720:CDS | 30.0% | |
| ATCCTTTCTCTAACAATAGA+AGG | + | chr7_4:19539122-19539141 | None:intergenic | 30.0% | |
| TAGATTTGAATGATGCTCAT+GGG | + | chr7_4:19539192-19539211 | None:intergenic | 30.0% | |
| ATTCAAATCTACTTTCTTGG+AGG | - | chr7_4:19539201-19539220 | Msa1143720:CDS | 30.0% | |
| TGGTCGATTAGTATCTTTAT+AGG | + | chr7_4:19539309-19539328 | None:intergenic | 30.0% | |
| TGATGAACAATGCTTTGTAT+CGG | - | chr7_4:19539639-19539658 | Msa1143720:CDS | 30.0% | |
| AACACTGAGAAACTTTCTTT+AGG | + | chr7_4:19539771-19539790 | None:intergenic | 30.0% | |
| ! | TTTCTCAGTGTTGTTGATTA+GGG | - | chr7_4:19539779-19539798 | Msa1143720:CDS | 30.0% |
| ! | TATGTGATTTTATGCAACCT+AGG | - | chr7_4:19539803-19539822 | Msa1143720:CDS | 30.0% |
| ! | ATGTGATTTTATGCAACCTA+GGG | - | chr7_4:19539804-19539823 | Msa1143720:CDS | 30.0% |
| TCATTGAATATAAGGTGAAG+AGG | + | chr7_4:19539855-19539874 | None:intergenic | 30.0% | |
| TTCATATGTGTGATCAATGT+AGG | - | chr7_4:19539891-19539910 | Msa1143720:CDS | 30.0% | |
| AATGTAGGACACATTATACA+TGG | - | chr7_4:19539906-19539925 | Msa1143720:CDS | 30.0% | |
| TCACTGTTTGGATTATTTGA+GGG | + | chr7_4:19539963-19539982 | None:intergenic | 30.0% | |
| !!! | TTTTGGGTTAAAGAGTACAT+TGG | - | chr7_4:19539997-19540016 | Msa1143720:CDS | 30.0% |
| AGAACAACTGTACATTAACA+AGG | - | chr7_4:19540041-19540060 | Msa1143720:intron | 30.0% | |
| TTTCCCAAAATCTTGATGTT+GGG | + | chr7_4:19540090-19540109 | None:intergenic | 30.0% | |
| ATCAATTGATGAGCAAGAAT+TGG | + | chr7_4:19540163-19540182 | None:intergenic | 30.0% | |
| !! | CTTAATTTGTGGCAAGAAAT+AGG | - | chr7_4:19540210-19540229 | Msa1143720:intron | 30.0% |
| !! | CATGCAGTTTTGTAATTTGT+AGG | + | chr7_4:19540502-19540521 | None:intergenic | 30.0% |
| CTACAAATTACAAAACTGCA+TGG | - | chr7_4:19540500-19540519 | Msa1143720:intron | 30.0% | |
| TTTCCTTATTACATGAGTGA+AGG | - | chr7_4:19540624-19540643 | Msa1143720:CDS | 30.0% | |
| TATATAGAGGAAAGAACCTT+TGG | + | chr7_4:19540698-19540717 | None:intergenic | 30.0% | |
| AATGAAGACTGAGAAATTTG+AGG | - | chr7_4:19540746-19540765 | Msa1143720:CDS | 30.0% | |
| GAACCAAACTTATTTAGATG+TGG | - | chr7_4:19540863-19540882 | Msa1143720:CDS | 30.0% | |
| GAGTACATTAAGAAATGCTT+AGG | - | chr7_4:19539008-19539027 | Msa1143720:CDS | 30.0% | |
| TACATTAAGAAATGCTTAGG+TGG | - | chr7_4:19539011-19539030 | Msa1143720:CDS | 30.0% | |
| ! | TACTTCTTGAAGTCTTTTGA+TGG | + | chr7_4:19539084-19539103 | None:intergenic | 30.0% |
| CAAAAGACTTCAAGAAGTAA+TGG | - | chr7_4:19539085-19539104 | Msa1143720:CDS | 30.0% | |
| ATCCTTTCTCTAACAATAGA+AGG | + | chr7_4:19539122-19539141 | None:intergenic | 30.0% | |
| TAGATTTGAATGATGCTCAT+GGG | + | chr7_4:19539192-19539211 | None:intergenic | 30.0% | |
| ATTCAAATCTACTTTCTTGG+AGG | - | chr7_4:19539201-19539220 | Msa1143720:CDS | 30.0% | |
| TGGTCGATTAGTATCTTTAT+AGG | + | chr7_4:19539309-19539328 | None:intergenic | 30.0% | |
| TGATGAACAATGCTTTGTAT+CGG | - | chr7_4:19539639-19539658 | Msa1143720:CDS | 30.0% | |
| AACACTGAGAAACTTTCTTT+AGG | + | chr7_4:19539771-19539790 | None:intergenic | 30.0% | |
| ! | TTTCTCAGTGTTGTTGATTA+GGG | - | chr7_4:19539779-19539798 | Msa1143720:CDS | 30.0% |
| ! | TATGTGATTTTATGCAACCT+AGG | - | chr7_4:19539803-19539822 | Msa1143720:CDS | 30.0% |
| ! | ATGTGATTTTATGCAACCTA+GGG | - | chr7_4:19539804-19539823 | Msa1143720:CDS | 30.0% |
| TCATTGAATATAAGGTGAAG+AGG | + | chr7_4:19539855-19539874 | None:intergenic | 30.0% | |
| TTCATATGTGTGATCAATGT+AGG | - | chr7_4:19539891-19539910 | Msa1143720:CDS | 30.0% | |
| AATGTAGGACACATTATACA+TGG | - | chr7_4:19539906-19539925 | Msa1143720:CDS | 30.0% | |
| TCACTGTTTGGATTATTTGA+GGG | + | chr7_4:19539963-19539982 | None:intergenic | 30.0% | |
| !!! | TTTTGGGTTAAAGAGTACAT+TGG | - | chr7_4:19539997-19540016 | Msa1143720:CDS | 30.0% |
| AGAACAACTGTACATTAACA+AGG | - | chr7_4:19540041-19540060 | Msa1143720:intron | 30.0% | |
| TTTCCCAAAATCTTGATGTT+GGG | + | chr7_4:19540090-19540109 | None:intergenic | 30.0% | |
| ATCAATTGATGAGCAAGAAT+TGG | + | chr7_4:19540163-19540182 | None:intergenic | 30.0% | |
| !! | CTTAATTTGTGGCAAGAAAT+AGG | - | chr7_4:19540210-19540229 | Msa1143720:intron | 30.0% |
| !! | CATGCAGTTTTGTAATTTGT+AGG | + | chr7_4:19540502-19540521 | None:intergenic | 30.0% |
| CTACAAATTACAAAACTGCA+TGG | - | chr7_4:19540500-19540519 | Msa1143720:intron | 30.0% | |
| TTTCCTTATTACATGAGTGA+AGG | - | chr7_4:19540624-19540643 | Msa1143720:CDS | 30.0% | |
| TATATAGAGGAAAGAACCTT+TGG | + | chr7_4:19540698-19540717 | None:intergenic | 30.0% | |
| AATGAAGACTGAGAAATTTG+AGG | - | chr7_4:19540746-19540765 | Msa1143720:CDS | 30.0% | |
| GAACCAAACTTATTTAGATG+TGG | - | chr7_4:19540863-19540882 | Msa1143720:CDS | 30.0% | |
| ATTAAGAAATGCTTAGGTGG+TGG | - | chr7_4:19539014-19539033 | Msa1143720:CDS | 35.0% | |
| AATGATGCAATCATCTTCTG+TGG | - | chr7_4:19539041-19539060 | Msa1143720:CDS | 35.0% | |
| TGCCTTCTATTGTTAGAGAA+AGG | - | chr7_4:19539117-19539136 | Msa1143720:CDS | 35.0% | |
| CCTTAGCAAAGAAGAAAGAT+GGG | - | chr7_4:19539151-19539170 | Msa1143720:CDS | 35.0% | |
| AGATTTGAATGATGCTCATG+GGG | + | chr7_4:19539191-19539210 | None:intergenic | 35.0% | |
| GTAGATTTGAATGATGCTCA+TGG | + | chr7_4:19539193-19539212 | None:intergenic | 35.0% | |
| !! | AGATTGGCTTAGATGATGAA+GGG | - | chr7_4:19539246-19539265 | Msa1143720:CDS | 35.0% |
| GATACTAATCGACCATTGTT+AGG | - | chr7_4:19539314-19539333 | Msa1143720:CDS | 35.0% | |
| TCTGCTTGTAGTAATGTAAC+TGG | - | chr7_4:19539344-19539363 | Msa1143720:CDS | 35.0% | |
| !!! | CATGTTTTGATTTTGCAGCA+AGG | - | chr7_4:19539423-19539442 | Msa1143720:intron | 35.0% |
| ! | CAAGAAACTTATGTGGACTA+AGG | + | chr7_4:19539592-19539611 | None:intergenic | 35.0% |
| CTTAGTCCACATAAGTTTCT+TGG | - | chr7_4:19539590-19539609 | Msa1143720:CDS | 35.0% | |
| !! | TTGTTCATCAAAAGTACTCC+CGG | + | chr7_4:19539629-19539648 | None:intergenic | 35.0% |
| TGTCAATGCATTCGATGAAA+AGG | - | chr7_4:19539709-19539728 | Msa1143720:CDS | 35.0% | |
| ! | GTTTCTCAGTGTTGTTGATT+AGG | - | chr7_4:19539778-19539797 | Msa1143720:CDS | 35.0% |
| AACATAGAAGAGAGGGAAAA+TGG | - | chr7_4:19539931-19539950 | Msa1143720:CDS | 35.0% | |
| ACATAGAAGAGAGGGAAAAT+GGG | - | chr7_4:19539932-19539951 | Msa1143720:CDS | 35.0% | |
| CACTGTTTGGATTATTTGAG+GGG | + | chr7_4:19539962-19539981 | None:intergenic | 35.0% | |
| CTCACTGTTTGGATTATTTG+AGG | + | chr7_4:19539964-19539983 | None:intergenic | 35.0% | |
| ! | AACCCCAACATCAAGATTTT+GGG | - | chr7_4:19540084-19540103 | Msa1143720:intron | 35.0% |
| TTCCCAAAATCTTGATGTTG+GGG | + | chr7_4:19540089-19540108 | None:intergenic | 35.0% | |
| GTTTCCCAAAATCTTGATGT+TGG | + | chr7_4:19540091-19540110 | None:intergenic | 35.0% | |
| TAAGCAATGCTGCAACAAAA+GGG | + | chr7_4:19540263-19540282 | None:intergenic | 35.0% | |
| TTAAGCAATGCTGCAACAAA+AGG | + | chr7_4:19540264-19540283 | None:intergenic | 35.0% | |
| ! | GCATTGCTTAATGACCTTTT+TGG | - | chr7_4:19540273-19540292 | Msa1143720:CDS | 35.0% |
| !! | TGTTTTGGATCTTTTGGTAC+AGG | - | chr7_4:19540563-19540582 | Msa1143720:CDS | 35.0% |
| !! | GTTTTGGATCTTTTGGTACA+GGG | - | chr7_4:19540564-19540583 | Msa1143720:CDS | 35.0% |
| TCACCTTCACTCATGTAATA+AGG | + | chr7_4:19540630-19540649 | None:intergenic | 35.0% | |
| !! | TTTTAGCTGTATATGGCCAA+AGG | - | chr7_4:19540679-19540698 | Msa1143720:CDS | 35.0% |
| !! | CTCAAGTTGAAGGTATATAG+AGG | + | chr7_4:19540711-19540730 | None:intergenic | 35.0% |
| CTCTATATACCTTCAACTTG+AGG | - | chr7_4:19540709-19540728 | Msa1143720:CDS | 35.0% | |
| TATACCTTCAACTTGAGGAA+TGG | - | chr7_4:19540714-19540733 | Msa1143720:CDS | 35.0% | |
| ! | GAAATTTGAGGCAGTAAACA+AGG | - | chr7_4:19540758-19540777 | Msa1143720:CDS | 35.0% |
| TGGCCACATCTAAATAAGTT+TGG | + | chr7_4:19540869-19540888 | None:intergenic | 35.0% | |
| GAGGCTACTAGCAATATATT+TGG | + | chr7_4:19540889-19540908 | None:intergenic | 35.0% | |
| !! | ACTCTAAAGTAGAGGATAGT+GGG | + | chr7_4:19540954-19540973 | None:intergenic | 35.0% |
| !! | AACTCTAAAGTAGAGGATAG+TGG | + | chr7_4:19540955-19540974 | None:intergenic | 35.0% |
| ATTAAGAAATGCTTAGGTGG+TGG | - | chr7_4:19539014-19539033 | Msa1143720:CDS | 35.0% | |
| AATGATGCAATCATCTTCTG+TGG | - | chr7_4:19539041-19539060 | Msa1143720:CDS | 35.0% | |
| TGCCTTCTATTGTTAGAGAA+AGG | - | chr7_4:19539117-19539136 | Msa1143720:CDS | 35.0% | |
| CCTTAGCAAAGAAGAAAGAT+GGG | - | chr7_4:19539151-19539170 | Msa1143720:CDS | 35.0% | |
| AGATTTGAATGATGCTCATG+GGG | + | chr7_4:19539191-19539210 | None:intergenic | 35.0% | |
| GTAGATTTGAATGATGCTCA+TGG | + | chr7_4:19539193-19539212 | None:intergenic | 35.0% | |
| !! | AGATTGGCTTAGATGATGAA+GGG | - | chr7_4:19539246-19539265 | Msa1143720:CDS | 35.0% |
| GATACTAATCGACCATTGTT+AGG | - | chr7_4:19539314-19539333 | Msa1143720:CDS | 35.0% | |
| TCTGCTTGTAGTAATGTAAC+TGG | - | chr7_4:19539344-19539363 | Msa1143720:CDS | 35.0% | |
| !!! | CATGTTTTGATTTTGCAGCA+AGG | - | chr7_4:19539423-19539442 | Msa1143720:intron | 35.0% |
| ! | CAAGAAACTTATGTGGACTA+AGG | + | chr7_4:19539592-19539611 | None:intergenic | 35.0% |
| CTTAGTCCACATAAGTTTCT+TGG | - | chr7_4:19539590-19539609 | Msa1143720:CDS | 35.0% | |
| !! | TTGTTCATCAAAAGTACTCC+CGG | + | chr7_4:19539629-19539648 | None:intergenic | 35.0% |
| TGTCAATGCATTCGATGAAA+AGG | - | chr7_4:19539709-19539728 | Msa1143720:CDS | 35.0% | |
| ! | GTTTCTCAGTGTTGTTGATT+AGG | - | chr7_4:19539778-19539797 | Msa1143720:CDS | 35.0% |
| AACATAGAAGAGAGGGAAAA+TGG | - | chr7_4:19539931-19539950 | Msa1143720:CDS | 35.0% | |
| ACATAGAAGAGAGGGAAAAT+GGG | - | chr7_4:19539932-19539951 | Msa1143720:CDS | 35.0% | |
| CACTGTTTGGATTATTTGAG+GGG | + | chr7_4:19539962-19539981 | None:intergenic | 35.0% | |
| CTCACTGTTTGGATTATTTG+AGG | + | chr7_4:19539964-19539983 | None:intergenic | 35.0% | |
| ! | AACCCCAACATCAAGATTTT+GGG | - | chr7_4:19540084-19540103 | Msa1143720:intron | 35.0% |
| TTCCCAAAATCTTGATGTTG+GGG | + | chr7_4:19540089-19540108 | None:intergenic | 35.0% | |
| GTTTCCCAAAATCTTGATGT+TGG | + | chr7_4:19540091-19540110 | None:intergenic | 35.0% | |
| TAAGCAATGCTGCAACAAAA+GGG | + | chr7_4:19540263-19540282 | None:intergenic | 35.0% | |
| TTAAGCAATGCTGCAACAAA+AGG | + | chr7_4:19540264-19540283 | None:intergenic | 35.0% | |
| ! | GCATTGCTTAATGACCTTTT+TGG | - | chr7_4:19540273-19540292 | Msa1143720:CDS | 35.0% |
| !! | TGTTTTGGATCTTTTGGTAC+AGG | - | chr7_4:19540563-19540582 | Msa1143720:CDS | 35.0% |
| !! | GTTTTGGATCTTTTGGTACA+GGG | - | chr7_4:19540564-19540583 | Msa1143720:CDS | 35.0% |
| TCACCTTCACTCATGTAATA+AGG | + | chr7_4:19540630-19540649 | None:intergenic | 35.0% | |
| !! | TTTTAGCTGTATATGGCCAA+AGG | - | chr7_4:19540679-19540698 | Msa1143720:CDS | 35.0% |
| !! | CTCAAGTTGAAGGTATATAG+AGG | + | chr7_4:19540711-19540730 | None:intergenic | 35.0% |
| CTCTATATACCTTCAACTTG+AGG | - | chr7_4:19540709-19540728 | Msa1143720:CDS | 35.0% | |
| TATACCTTCAACTTGAGGAA+TGG | - | chr7_4:19540714-19540733 | Msa1143720:CDS | 35.0% | |
| ! | GAAATTTGAGGCAGTAAACA+AGG | - | chr7_4:19540758-19540777 | Msa1143720:CDS | 35.0% |
| TGGCCACATCTAAATAAGTT+TGG | + | chr7_4:19540869-19540888 | None:intergenic | 35.0% | |
| GAGGCTACTAGCAATATATT+TGG | + | chr7_4:19540889-19540908 | None:intergenic | 35.0% | |
| !! | ACTCTAAAGTAGAGGATAGT+GGG | + | chr7_4:19540954-19540973 | None:intergenic | 35.0% |
| !! | AACTCTAAAGTAGAGGATAG+TGG | + | chr7_4:19540955-19540974 | None:intergenic | 35.0% |
| GCCTTAGCAAAGAAGAAAGA+TGG | - | chr7_4:19539150-19539169 | Msa1143720:CDS | 40.0% | |
| CCCATCTTTCTTCTTTGCTA+AGG | + | chr7_4:19539154-19539173 | None:intergenic | 40.0% | |
| TAGCAAAGAAGAAAGATGGG+TGG | - | chr7_4:19539154-19539173 | Msa1143720:CDS | 40.0% | |
| ! | GAAAGATGGGTGGTTTTTGT+AGG | - | chr7_4:19539164-19539183 | Msa1143720:CDS | 40.0% |
| !! | GAGATTGGCTTAGATGATGA+AGG | - | chr7_4:19539245-19539264 | Msa1143720:CDS | 40.0% |
| TGATGAAGGGTTGCTTGATA+TGG | - | chr7_4:19539259-19539278 | Msa1143720:CDS | 40.0% | |
| GCAGAGAAAGATCCTAACAA+TGG | + | chr7_4:19539329-19539348 | None:intergenic | 40.0% | |
| TTTGTTTAGTGGTCCGTATG+TGG | - | chr7_4:19539520-19539539 | Msa1143720:intron | 40.0% | |
| AGTCCACATAAGTTTCTTGG+TGG | - | chr7_4:19539593-19539612 | Msa1143720:CDS | 40.0% | |
| ACATGGAGAACATAGAAGAG+AGG | - | chr7_4:19539923-19539942 | Msa1143720:CDS | 40.0% | |
| CATGGAGAACATAGAAGAGA+GGG | - | chr7_4:19539924-19539943 | Msa1143720:CDS | 40.0% | |
| CATAGAAGAGAGGGAAAATG+GGG | - | chr7_4:19539933-19539952 | Msa1143720:CDS | 40.0% | |
| ATAGAAGAGAGGGAAAATGG+GGG | - | chr7_4:19539934-19539953 | Msa1143720:CDS | 40.0% | |
| !!! | TGAGAGCATCGTTAGCATTT+TGG | - | chr7_4:19539980-19539999 | Msa1143720:CDS | 40.0% |
| !!! | GAGAGCATCGTTAGCATTTT+GGG | - | chr7_4:19539981-19540000 | Msa1143720:CDS | 40.0% |
| CAAAATCTTGATGTTGGGGT+TGG | + | chr7_4:19540085-19540104 | None:intergenic | 40.0% | |
| ! | CAACCCCAACATCAAGATTT+TGG | - | chr7_4:19540083-19540102 | Msa1143720:intron | 40.0% |
| AGTTGTAGCCAAGAACATGA+AGG | - | chr7_4:19540183-19540202 | Msa1143720:intron | 40.0% | |
| GTTGTAGCCAAGAACATGAA+GGG | - | chr7_4:19540184-19540203 | Msa1143720:intron | 40.0% | |
| TTGTAGCCAAGAACATGAAG+GGG | - | chr7_4:19540185-19540204 | Msa1143720:intron | 40.0% | |
| TTGAGTAATTCGTGTCCGTA+AGG | + | chr7_4:19540333-19540352 | None:intergenic | 40.0% | |
| TATCAGATCAGCTGTTCAAG+AGG | - | chr7_4:19540377-19540396 | Msa1143720:CDS | 40.0% | |
| ! | CTTTTGGTACAGGGCTATAT+CGG | - | chr7_4:19540573-19540592 | Msa1143720:CDS | 40.0% |
| ATATCGGAGTAAAACCTGGA+TGG | - | chr7_4:19540589-19540608 | Msa1143720:CDS | 40.0% | |
| AAACTAACTCTTGTCCATCC+AGG | + | chr7_4:19540606-19540625 | None:intergenic | 40.0% | |
| !! | ACTTCCATTCCTCAAGTTGA+AGG | + | chr7_4:19540721-19540740 | None:intergenic | 40.0% |
| TCAACTTGAGGAATGGAAGT+TGG | - | chr7_4:19540721-19540740 | Msa1143720:CDS | 40.0% | |
| GGGAATATTGCAGGAAGAAA+TGG | - | chr7_4:19540926-19540945 | Msa1143720:CDS | 40.0% | |
| GCCTTAGCAAAGAAGAAAGA+TGG | - | chr7_4:19539150-19539169 | Msa1143720:CDS | 40.0% | |
| CCCATCTTTCTTCTTTGCTA+AGG | + | chr7_4:19539154-19539173 | None:intergenic | 40.0% | |
| TAGCAAAGAAGAAAGATGGG+TGG | - | chr7_4:19539154-19539173 | Msa1143720:CDS | 40.0% | |
| ! | GAAAGATGGGTGGTTTTTGT+AGG | - | chr7_4:19539164-19539183 | Msa1143720:CDS | 40.0% |
| !! | GAGATTGGCTTAGATGATGA+AGG | - | chr7_4:19539245-19539264 | Msa1143720:CDS | 40.0% |
| TGATGAAGGGTTGCTTGATA+TGG | - | chr7_4:19539259-19539278 | Msa1143720:CDS | 40.0% | |
| GCAGAGAAAGATCCTAACAA+TGG | + | chr7_4:19539329-19539348 | None:intergenic | 40.0% | |
| TTTGTTTAGTGGTCCGTATG+TGG | - | chr7_4:19539520-19539539 | Msa1143720:intron | 40.0% | |
| AGTCCACATAAGTTTCTTGG+TGG | - | chr7_4:19539593-19539612 | Msa1143720:CDS | 40.0% | |
| ACATGGAGAACATAGAAGAG+AGG | - | chr7_4:19539923-19539942 | Msa1143720:CDS | 40.0% | |
| CATGGAGAACATAGAAGAGA+GGG | - | chr7_4:19539924-19539943 | Msa1143720:CDS | 40.0% | |
| CATAGAAGAGAGGGAAAATG+GGG | - | chr7_4:19539933-19539952 | Msa1143720:CDS | 40.0% | |
| ATAGAAGAGAGGGAAAATGG+GGG | - | chr7_4:19539934-19539953 | Msa1143720:CDS | 40.0% | |
| !!! | TGAGAGCATCGTTAGCATTT+TGG | - | chr7_4:19539980-19539999 | Msa1143720:CDS | 40.0% |
| !!! | GAGAGCATCGTTAGCATTTT+GGG | - | chr7_4:19539981-19540000 | Msa1143720:CDS | 40.0% |
| CAAAATCTTGATGTTGGGGT+TGG | + | chr7_4:19540085-19540104 | None:intergenic | 40.0% | |
| ! | CAACCCCAACATCAAGATTT+TGG | - | chr7_4:19540083-19540102 | Msa1143720:intron | 40.0% |
| AGTTGTAGCCAAGAACATGA+AGG | - | chr7_4:19540183-19540202 | Msa1143720:intron | 40.0% | |
| GTTGTAGCCAAGAACATGAA+GGG | - | chr7_4:19540184-19540203 | Msa1143720:intron | 40.0% | |
| TTGTAGCCAAGAACATGAAG+GGG | - | chr7_4:19540185-19540204 | Msa1143720:intron | 40.0% | |
| TTGAGTAATTCGTGTCCGTA+AGG | + | chr7_4:19540333-19540352 | None:intergenic | 40.0% | |
| TATCAGATCAGCTGTTCAAG+AGG | - | chr7_4:19540377-19540396 | Msa1143720:CDS | 40.0% | |
| ! | CTTTTGGTACAGGGCTATAT+CGG | - | chr7_4:19540573-19540592 | Msa1143720:CDS | 40.0% |
| ATATCGGAGTAAAACCTGGA+TGG | - | chr7_4:19540589-19540608 | Msa1143720:CDS | 40.0% | |
| AAACTAACTCTTGTCCATCC+AGG | + | chr7_4:19540606-19540625 | None:intergenic | 40.0% | |
| !! | ACTTCCATTCCTCAAGTTGA+AGG | + | chr7_4:19540721-19540740 | None:intergenic | 40.0% |
| TCAACTTGAGGAATGGAAGT+TGG | - | chr7_4:19540721-19540740 | Msa1143720:CDS | 40.0% | |
| GGGAATATTGCAGGAAGAAA+TGG | - | chr7_4:19540926-19540945 | Msa1143720:CDS | 40.0% | |
| ACTTTCTTGGAGGCAGAGTT+TGG | - | chr7_4:19539211-19539230 | Msa1143720:CDS | 45.0% | |
| TTGGCAGAGGTTGTAGAGAT+TGG | - | chr7_4:19539230-19539249 | Msa1143720:CDS | 45.0% | |
| !! | AGCTTTGAAGCTGCAACTTG+AGG | - | chr7_4:19539283-19539302 | Msa1143720:CDS | 45.0% |
| TCCGTATGTGGAGATTGACA+TGG | - | chr7_4:19539532-19539551 | Msa1143720:intron | 45.0% | |
| CCCATGTCAATCTCCACATA+CGG | + | chr7_4:19539536-19539555 | None:intergenic | 45.0% | |
| CCGTATGTGGAGATTGACAT+GGG | - | chr7_4:19539533-19539552 | Msa1143720:intron | 45.0% | |
| TGGAGATTGACATGGGATCA+GGG | - | chr7_4:19539540-19539559 | Msa1143720:intron | 45.0% | |
| GGACCACCAAGAAACTTATG+TGG | + | chr7_4:19539599-19539618 | None:intergenic | 45.0% | |
| !! | AAAAGTACTCCCGGAGAATC+AGG | + | chr7_4:19539620-19539639 | None:intergenic | 45.0% |
| CTAACGATGCTCTCACTGTT+TGG | + | chr7_4:19539975-19539994 | None:intergenic | 45.0% | |
| ! | TGAGAGTATAGCTTGTCGCT+TGG | + | chr7_4:19540121-19540140 | None:intergenic | 45.0% |
| TGTAGCCAAGAACATGAAGG+GGG | - | chr7_4:19540186-19540205 | Msa1143720:intron | 45.0% | |
| ! | ATGAAGGGGGGCTTAATTTG+TGG | - | chr7_4:19540199-19540218 | Msa1143720:intron | 45.0% |
| CAAGAAATAGGGAACCAGAG+AGG | - | chr7_4:19540222-19540241 | Msa1143720:intron | 45.0% | |
| CTCGAGCTTGAATGCCAAAA+AGG | + | chr7_4:19540290-19540309 | None:intergenic | 45.0% | |
| !! | CTTTTTGGCATTCAAGCTCG+AGG | - | chr7_4:19540288-19540307 | Msa1143720:CDS | 45.0% |
| GGCTATATCGGAGTAAAACC+TGG | - | chr7_4:19540585-19540604 | Msa1143720:CDS | 45.0% | |
| ATGTTGATGTGGCTGTGAGA+AGG | - | chr7_4:19540841-19540860 | Msa1143720:CDS | 45.0% | |
| TTCCCTGAGGTGGAAACTTA+GGG | + | chr7_4:19540911-19540930 | None:intergenic | 45.0% | |
| ATTCCCTGAGGTGGAAACTT+AGG | + | chr7_4:19540912-19540931 | None:intergenic | 45.0% | |
| TCTTCCTGCAATATTCCCTG+AGG | + | chr7_4:19540924-19540943 | None:intergenic | 45.0% | |
| ACTTTCTTGGAGGCAGAGTT+TGG | - | chr7_4:19539211-19539230 | Msa1143720:CDS | 45.0% | |
| TTGGCAGAGGTTGTAGAGAT+TGG | - | chr7_4:19539230-19539249 | Msa1143720:CDS | 45.0% | |
| !! | AGCTTTGAAGCTGCAACTTG+AGG | - | chr7_4:19539283-19539302 | Msa1143720:CDS | 45.0% |
| TCCGTATGTGGAGATTGACA+TGG | - | chr7_4:19539532-19539551 | Msa1143720:intron | 45.0% | |
| CCCATGTCAATCTCCACATA+CGG | + | chr7_4:19539536-19539555 | None:intergenic | 45.0% | |
| CCGTATGTGGAGATTGACAT+GGG | - | chr7_4:19539533-19539552 | Msa1143720:intron | 45.0% | |
| TGGAGATTGACATGGGATCA+GGG | - | chr7_4:19539540-19539559 | Msa1143720:intron | 45.0% | |
| GGACCACCAAGAAACTTATG+TGG | + | chr7_4:19539599-19539618 | None:intergenic | 45.0% | |
| !! | AAAAGTACTCCCGGAGAATC+AGG | + | chr7_4:19539620-19539639 | None:intergenic | 45.0% |
| CTAACGATGCTCTCACTGTT+TGG | + | chr7_4:19539975-19539994 | None:intergenic | 45.0% | |
| ! | TGAGAGTATAGCTTGTCGCT+TGG | + | chr7_4:19540121-19540140 | None:intergenic | 45.0% |
| TGTAGCCAAGAACATGAAGG+GGG | - | chr7_4:19540186-19540205 | Msa1143720:intron | 45.0% | |
| ! | ATGAAGGGGGGCTTAATTTG+TGG | - | chr7_4:19540199-19540218 | Msa1143720:intron | 45.0% |
| CAAGAAATAGGGAACCAGAG+AGG | - | chr7_4:19540222-19540241 | Msa1143720:intron | 45.0% | |
| CTCGAGCTTGAATGCCAAAA+AGG | + | chr7_4:19540290-19540309 | None:intergenic | 45.0% | |
| !! | CTTTTTGGCATTCAAGCTCG+AGG | - | chr7_4:19540288-19540307 | Msa1143720:CDS | 45.0% |
| GGCTATATCGGAGTAAAACC+TGG | - | chr7_4:19540585-19540604 | Msa1143720:CDS | 45.0% | |
| ATGTTGATGTGGCTGTGAGA+AGG | - | chr7_4:19540841-19540860 | Msa1143720:CDS | 45.0% | |
| TTCCCTGAGGTGGAAACTTA+GGG | + | chr7_4:19540911-19540930 | None:intergenic | 45.0% | |
| ATTCCCTGAGGTGGAAACTT+AGG | + | chr7_4:19540912-19540931 | None:intergenic | 45.0% | |
| TCTTCCTGCAATATTCCCTG+AGG | + | chr7_4:19540924-19540943 | None:intergenic | 45.0% | |
| GCAATCATCTTCTGTGGCTC+AGG | - | chr7_4:19539047-19539066 | Msa1143720:CDS | 50.0% | |
| GTGGAGATTGACATGGGATC+AGG | - | chr7_4:19539539-19539558 | Msa1143720:intron | 50.0% | |
| AGATTGACATGGGATCAGGG+AGG | - | chr7_4:19539543-19539562 | Msa1143720:intron | 50.0% | |
| ATGGGATCAGGGAGGAATGA+TGG | - | chr7_4:19539551-19539570 | Msa1143720:intron | 50.0% | |
| TGGGATCAGGGAGGAATGAT+GGG | - | chr7_4:19539552-19539571 | Msa1143720:intron | 50.0% | |
| ! | TCTTGGTGGTCCTGATTCTC+CGG | - | chr7_4:19539607-19539626 | Msa1143720:CDS | 50.0% |
| GTAGCCAAGAACATGAAGGG+GGG | - | chr7_4:19540187-19540206 | Msa1143720:intron | 50.0% | |
| TAAGCCCCCCTTCATGTTCT+TGG | + | chr7_4:19540194-19540213 | None:intergenic | 50.0% | |
| GCAACAAAAGGGCCATGAAG+CGG | + | chr7_4:19540252-19540271 | None:intergenic | 50.0% | |
| TTTGGCATTCAAGCTCGAGG+AGG | - | chr7_4:19540291-19540310 | Msa1143720:CDS | 50.0% | |
| TTGGCATTCAAGCTCGAGGA+GGG | - | chr7_4:19540292-19540311 | Msa1143720:CDS | 50.0% | |
| TGTGCTTGTGCTGGACCTTA+CGG | - | chr7_4:19540315-19540334 | Msa1143720:CDS | 50.0% | |
| CTCCCTAAGTTTCCACCTCA+GGG | - | chr7_4:19540906-19540925 | Msa1143720:CDS | 50.0% | |
| TCCACCTCAGGGAATATTGC+AGG | - | chr7_4:19540917-19540936 | Msa1143720:CDS | 50.0% | |
| TCCTGCAATATTCCCTGAGG+TGG | + | chr7_4:19540921-19540940 | None:intergenic | 50.0% | |
| GCAATCATCTTCTGTGGCTC+AGG | - | chr7_4:19539047-19539066 | Msa1143720:CDS | 50.0% | |
| GTGGAGATTGACATGGGATC+AGG | - | chr7_4:19539539-19539558 | Msa1143720:intron | 50.0% | |
| AGATTGACATGGGATCAGGG+AGG | - | chr7_4:19539543-19539562 | Msa1143720:intron | 50.0% | |
| ATGGGATCAGGGAGGAATGA+TGG | - | chr7_4:19539551-19539570 | Msa1143720:intron | 50.0% | |
| TGGGATCAGGGAGGAATGAT+GGG | - | chr7_4:19539552-19539571 | Msa1143720:intron | 50.0% | |
| ! | TCTTGGTGGTCCTGATTCTC+CGG | - | chr7_4:19539607-19539626 | Msa1143720:CDS | 50.0% |
| GTAGCCAAGAACATGAAGGG+GGG | - | chr7_4:19540187-19540206 | Msa1143720:intron | 50.0% | |
| TAAGCCCCCCTTCATGTTCT+TGG | + | chr7_4:19540194-19540213 | None:intergenic | 50.0% | |
| GCAACAAAAGGGCCATGAAG+CGG | + | chr7_4:19540252-19540271 | None:intergenic | 50.0% | |
| TTTGGCATTCAAGCTCGAGG+AGG | - | chr7_4:19540291-19540310 | Msa1143720:CDS | 50.0% | |
| TTGGCATTCAAGCTCGAGGA+GGG | - | chr7_4:19540292-19540311 | Msa1143720:CDS | 50.0% | |
| TGTGCTTGTGCTGGACCTTA+CGG | - | chr7_4:19540315-19540334 | Msa1143720:CDS | 50.0% | |
| CTCCCTAAGTTTCCACCTCA+GGG | - | chr7_4:19540906-19540925 | Msa1143720:CDS | 50.0% | |
| TCCACCTCAGGGAATATTGC+AGG | - | chr7_4:19540917-19540936 | Msa1143720:CDS | 50.0% | |
| TCCTGCAATATTCCCTGAGG+TGG | + | chr7_4:19540921-19540940 | None:intergenic | 50.0% | |
| TTGGAGGCAGAGTTTGGCAG+AGG | - | chr7_4:19539217-19539236 | Msa1143720:CDS | 55.0% | |
| ! | CTTGGTGGTCCTGATTCTCC+GGG | - | chr7_4:19539608-19539627 | Msa1143720:CDS | 55.0% |
| TTCCGCCTCCACAAGTGGAT+GGG | + | chr7_4:19539679-19539698 | None:intergenic | 55.0% | |
| CCTGAGGTGGAAACTTAGGG+AGG | + | chr7_4:19540908-19540927 | None:intergenic | 55.0% | |
| CCTCCCTAAGTTTCCACCTC+AGG | - | chr7_4:19540905-19540924 | Msa1143720:CDS | 55.0% | |
| TTGGAGGCAGAGTTTGGCAG+AGG | - | chr7_4:19539217-19539236 | Msa1143720:CDS | 55.0% | |
| ! | CTTGGTGGTCCTGATTCTCC+GGG | - | chr7_4:19539608-19539627 | Msa1143720:CDS | 55.0% |
| TTCCGCCTCCACAAGTGGAT+GGG | + | chr7_4:19539679-19539698 | None:intergenic | 55.0% | |
| CCTGAGGTGGAAACTTAGGG+AGG | + | chr7_4:19540908-19540927 | None:intergenic | 55.0% | |
| CCTCCCTAAGTTTCCACCTC+AGG | - | chr7_4:19540905-19540924 | Msa1143720:CDS | 55.0% | |
| TCTTCGCCCCCATCCACTTG+TGG | - | chr7_4:19539668-19539687 | Msa1143720:CDS | 60.0% | |
| TCCGCCTCCACAAGTGGATG+GGG | + | chr7_4:19539678-19539697 | None:intergenic | 60.0% | |
| GTTCCGCCTCCACAAGTGGA+TGG | + | chr7_4:19539680-19539699 | None:intergenic | 60.0% | |
| GACAGTTCCGCCTCCACAAG+TGG | + | chr7_4:19539684-19539703 | None:intergenic | 60.0% | |
| CATGAAGCGGCTTGCCTCTC+TGG | + | chr7_4:19540239-19540258 | None:intergenic | 60.0% | |
| CAGAGAGGCAAGCCGCTTCA+TGG | - | chr7_4:19540237-19540256 | Msa1143720:CDS | 60.0% | |
| TCTTCGCCCCCATCCACTTG+TGG | - | chr7_4:19539668-19539687 | Msa1143720:CDS | 60.0% | |
| TCCGCCTCCACAAGTGGATG+GGG | + | chr7_4:19539678-19539697 | None:intergenic | 60.0% | |
| GTTCCGCCTCCACAAGTGGA+TGG | + | chr7_4:19539680-19539699 | None:intergenic | 60.0% | |
| GACAGTTCCGCCTCCACAAG+TGG | + | chr7_4:19539684-19539703 | None:intergenic | 60.0% | |
| CATGAAGCGGCTTGCCTCTC+TGG | + | chr7_4:19540239-19540258 | None:intergenic | 60.0% | |
| CAGAGAGGCAAGCCGCTTCA+TGG | - | chr7_4:19540237-19540256 | Msa1143720:CDS | 60.0% | |
| TCGCCCCCATCCACTTGTGG+AGG | - | chr7_4:19539671-19539690 | Msa1143720:CDS | 65.0% | |
| CCGCCTCCACAAGTGGATGG+GGG | + | chr7_4:19539677-19539696 | None:intergenic | 65.0% | |
| CCCCCATCCACTTGTGGAGG+CGG | - | chr7_4:19539674-19539693 | Msa1143720:CDS | 65.0% | |
| ! | CGAGGAGGGTGTGCTTGTGC+TGG | - | chr7_4:19540306-19540325 | Msa1143720:CDS | 65.0% |
| TCGCCCCCATCCACTTGTGG+AGG | - | chr7_4:19539671-19539690 | Msa1143720:CDS | 65.0% | |
| CCGCCTCCACAAGTGGATGG+GGG | + | chr7_4:19539677-19539696 | None:intergenic | 65.0% | |
| CCCCCATCCACTTGTGGAGG+CGG | - | chr7_4:19539674-19539693 | Msa1143720:CDS | 65.0% | |
| ! | CGAGGAGGGTGTGCTTGTGC+TGG | - | chr7_4:19540306-19540325 | Msa1143720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 19538990 | 19540977 | 19538990 | ID=Msa1143720;Name=Msa1143720 |
| chr7_4 | mRNA | 19538990 | 19540977 | 19538990 | ID=Msa1143720-mRNA-1;Parent=Msa1143720;Name=Msa1143720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|511 |
| chr7_4 | exon | 19540523 | 19540977 | 19540523 | ID=Msa1143720-mRNA-1:exon:4443;Parent=Msa1143720-mRNA-1 |
| chr7_4 | exon | 19540237 | 19540438 | 19540237 | ID=Msa1143720-mRNA-1:exon:4442;Parent=Msa1143720-mRNA-1 |
| chr7_4 | exon | 19539569 | 19540054 | 19539569 | ID=Msa1143720-mRNA-1:exon:4441;Parent=Msa1143720-mRNA-1 |
| chr7_4 | exon | 19538990 | 19539382 | 19538990 | ID=Msa1143720-mRNA-1:exon:4440;Parent=Msa1143720-mRNA-1 |
| chr7_4 | CDS | 19540523 | 19540977 | 19540523 | ID=Msa1143720-mRNA-1:cds;Parent=Msa1143720-mRNA-1 |
| chr7_4 | CDS | 19540237 | 19540438 | 19540237 | ID=Msa1143720-mRNA-1:cds;Parent=Msa1143720-mRNA-1 |
| chr7_4 | CDS | 19539569 | 19540054 | 19539569 | ID=Msa1143720-mRNA-1:cds;Parent=Msa1143720-mRNA-1 |
| chr7_4 | CDS | 19538990 | 19539382 | 19538990 | ID=Msa1143720-mRNA-1:cds;Parent=Msa1143720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
