Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705510 | XP_003630258.2 | 95.016 | 622 | 31 | 0 | 1 | 622 | 1 | 622 | 0.0 | 1214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705510 | sp|P99177|CSD_STAAN | 24.862 | 362 | 239 | 8 | 90 | 447 | 9 | 341 | 8.14e-21 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705510 | G7LE12 | 95.016 | 622 | 31 | 0 | 1 | 622 | 1 | 622 | 0.0 | 1214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0705510 | Msa1143720 | 0.869133 | 3.888994e-66 | -8.615850e-47 |
| Msa0705510 | Msa1369070 | 0.881830 | 1.731859e-70 | -8.615850e-47 |
| Msa0569140 | Msa0705510 | 0.829198 | 5.885315e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705510 | MtrunA17_Chr8g0384181 | 95.016 | 622 | 31 | 0 | 1 | 622 | 1 | 622 | 0.0 | 1214 |
| Msa0705510 | MtrunA17_Chr8g0384171 | 71.980 | 596 | 129 | 7 | 16 | 601 | 1 | 568 | 0.0 | 891 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 129 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCCCAACATCAAGATTT+TGG | 0.137304 | 4_4:-78242978 | Msa0705510:CDS |
| TGAGAGCATCGTTAGCATTT+TGG | 0.175651 | 4_4:-78243081 | Msa0705510:CDS |
| AACATAGAAGAGAGGGAAAA+TGG | 0.180904 | 4_4:-78243130 | Msa0705510:CDS |
| CTTAATTTGTGGCAAGAAAT+AGG | 0.183307 | 4_4:-78242851 | Msa0705510:CDS |
| AATCATCTTCTTCCTTTCTA+TGG | 0.211262 | 4_4:-78244615 | Msa0705510:intron |
| CAACATTTCTAATCATTTAC+TGG | 0.236880 | 4_4:-78242269 | Msa0705510:CDS |
| CATTTCCACAAGTTTCTTAA+AGG | 0.252749 | 4_4:+78244803 | None:intergenic |
| TTCTAATATGTTGCTTGTTT+TGG | 0.256165 | 4_4:+78244857 | None:intergenic |
| ACAAGTTTCTTAAAGGATTC+AGG | 0.263856 | 4_4:+78244810 | None:intergenic |
| CTTAGTCCACATAAGTTTCT+TGG | 0.265340 | 4_4:-78243473 | Msa0705510:CDS |
| CATGAAGCGGCTTGCCTCTC+TGG | 0.274510 | 4_4:+78242825 | None:intergenic |
| ATCATTCAAATCTACTTTCT+TGG | 0.276230 | 4_4:-78243865 | Msa0705510:CDS |
| TGGTCGATTAGTATCTTTAT+AGG | 0.276407 | 4_4:+78243757 | None:intergenic |
| TACGCTGATCACACTGCTTC+TGG | 0.312202 | 4_4:-78244672 | Msa0705510:CDS |
| TCACCTTCACTCATGTAATA+AGG | 0.322294 | 4_4:+78242433 | None:intergenic |
| CTCACTGTTTGGATTATTTG+AGG | 0.323804 | 4_4:+78243100 | None:intergenic |
| CTAACGATGCTCTCACTGTT+TGG | 0.339477 | 4_4:+78243089 | None:intergenic |
| TCTGCTTGTAGTAATGTAAC+TGG | 0.341389 | 4_4:-78243719 | Msa0705510:CDS |
| CTTTAAGAAACTTGTGGAAA+TGG | 0.357233 | 4_4:-78244802 | Msa0705510:CDS |
| TTTCCCAAAATCTTGATGTT+GGG | 0.363233 | 4_4:+78242974 | None:intergenic |
| AAAAGTACTCCCGGAGAATC+AGG | 0.364713 | 4_4:+78243446 | None:intergenic |
| TTAATTTGTGGCAAGAAATA+GGG | 0.366674 | 4_4:-78242850 | Msa0705510:CDS |
| ATCAATTGATGAGCAAGAAT+TGG | 0.366969 | 4_4:+78242901 | None:intergenic |
| GCAGAGTTTGATTCTCCATT+TGG | 0.368437 | 4_4:-78244711 | Msa0705510:CDS |
| TGATGAAGGGTTGCTTGATA+TGG | 0.373761 | 4_4:-78243804 | Msa0705510:CDS |
| ATCCTTTCTCTAAGAATAGA+AGG | 0.374094 | 4_4:+78243944 | None:intergenic |
| CTCGAGCTTGAATGCCAAAA+AGG | 0.376314 | 4_4:+78242774 | None:intergenic |
| GATACTAATCGACCATTGTT+AGG | 0.382968 | 4_4:-78243749 | Msa0705510:CDS |
| CAGAGAGGCAAGCCGCTTCA+TGG | 0.383600 | 4_4:-78242824 | Msa0705510:CDS |
| ACTTTCTTGGAGGCAGAGTT+TGG | 0.384563 | 4_4:-78243852 | Msa0705510:CDS |
| TTGGCAGAGGTTGTAGAGAT+TGG | 0.397077 | 4_4:-78243833 | Msa0705510:CDS |
| TCTTGGTGGTCCTGATTCTC+CGG | 0.398856 | 4_4:-78243456 | Msa0705510:CDS |
| TCACTGTTTGGATTATTTGA+GGG | 0.410256 | 4_4:+78243101 | None:intergenic |
| CGAGGAGGGTGTGCTTGTGC+TGG | 0.414961 | 4_4:-78242755 | Msa0705510:CDS |
| ATGGGATCGGGGAGGAATGA+TGG | 0.416918 | 4_4:-78243512 | Msa0705510:CDS |
| TTAAGCAATGCTGCAACAAA+AGG | 0.418637 | 4_4:+78242800 | None:intergenic |
| GTGGAGATTGACATGGGATC+GGG | 0.420000 | 4_4:-78243524 | Msa0705510:CDS |
| TATATAGAGGAAAGAACCTT+TGG | 0.423081 | 4_4:+78242365 | None:intergenic |
| GTTTCCCAAAATCTTGATGT+TGG | 0.425618 | 4_4:+78242973 | None:intergenic |
| AAAAGACTTCAAGAAGTAAT+GGG | 0.426268 | 4_4:-78243977 | Msa0705510:CDS |
| CAAGTTTCTTAAAGGATTCA+GGG | 0.428525 | 4_4:+78244811 | None:intergenic |
| CAAAAGACTTCAAGAAGTAA+TGG | 0.430568 | 4_4:-78243978 | Msa0705510:CDS |
| TCCGCCTCCACAAGTGGATG+GGG | 0.435075 | 4_4:+78243388 | None:intergenic |
| ACATAGAAGAGAGGGAAAAT+GGG | 0.439075 | 4_4:-78243129 | Msa0705510:CDS |
| GCAATCATCTTCTGTGGCTC+AGG | 0.443522 | 4_4:-78244016 | Msa0705510:CDS |
| CTTGGTGGTCCTGATTCTCC+GGG | 0.449267 | 4_4:-78243455 | Msa0705510:CDS |
| TTTGTTTAGTGGTCCGTATG+TGG | 0.459507 | 4_4:-78243543 | Msa0705510:intron |
| GAGATTGGCTTAGATGATGA+AGG | 0.464045 | 4_4:-78243818 | Msa0705510:CDS |
| GCCTTAGCAAAGAAGAAAGA+TGG | 0.468675 | 4_4:-78243913 | Msa0705510:CDS |
| TGCCTTCTATTCTTAGAGAA+AGG | 0.468738 | 4_4:-78243946 | Msa0705510:CDS |
| TTCCGCCTCCACAAGTGGAT+GGG | 0.469410 | 4_4:+78243387 | None:intergenic |
| TCAACTTGAGGAATGGAAGT+TGG | 0.469505 | 4_4:-78242339 | Msa0705510:CDS |
| TGTCAATGCATTCGATGAAA+AGG | 0.469733 | 4_4:-78243354 | Msa0705510:intron |
| CCCATCTTTCTTCTTTGCTA+AGG | 0.470399 | 4_4:+78243912 | None:intergenic |
| CACTGTTTGGATTATTTGAG+GGG | 0.470973 | 4_4:+78243102 | None:intergenic |
| TCCTCCACGGTTTCATTACA+AGG | 0.471141 | 4_4:+78244774 | None:intergenic |
| CTCTATATAGCTTCAACTTG+AGG | 0.480761 | 4_4:-78242351 | Msa0705510:CDS |
| TTCCCAAAATCTTGATGTTG+GGG | 0.488915 | 4_4:+78242975 | None:intergenic |
| CTCAAGTTGAAGCTATATAG+AGG | 0.492344 | 4_4:+78242352 | None:intergenic |
| TTGGAGGCAGAGTTTGGCAG+AGG | 0.492636 | 4_4:-78243846 | Msa0705510:CDS |
| TCATACTTGCGACAGTTATG+TGG | 0.493076 | 4_4:-78244113 | Msa0705510:CDS |
| GAGTACATTAAGAAATGCTT+AGG | 0.500122 | 4_4:-78244055 | Msa0705510:CDS |
| CAAGAAACTTATGTGGACTA+AGG | 0.500580 | 4_4:+78243474 | None:intergenic |
| ATTCAAATCTACTTTCTTGG+AGG | 0.501194 | 4_4:-78243862 | Msa0705510:CDS |
| TGTGCTTGTGCTGGACCTTA+CGG | 0.504318 | 4_4:-78242746 | Msa0705510:CDS |
| GACAGTTCCGCCTCCACAAG+TGG | 0.505419 | 4_4:+78243382 | None:intergenic |
| GGCTATATCGGAGTAAAACC+TGG | 0.510918 | 4_4:-78242475 | Msa0705510:CDS |
| GTTCCGCCTCCACAAGTGGA+TGG | 0.514497 | 4_4:+78243386 | None:intergenic |
| TGAATCCTTTAAGAAACTTG+TGG | 0.516307 | 4_4:-78244808 | Msa0705510:CDS |
| CAAAATCTTGATGTTGGGGT+TGG | 0.516688 | 4_4:+78242979 | None:intergenic |
| TGGGATCGGGGAGGAATGAT+GGG | 0.521812 | 4_4:-78243511 | Msa0705510:CDS |
| TGGTTGCGGTCTCAAATCAT+AGG | 0.522944 | 4_4:-78244741 | Msa0705510:CDS |
| AAACTAACTCTTGTCCATCC+AGG | 0.525967 | 4_4:+78242457 | None:intergenic |
| CCACGGTTTCATTACAAGGC+AGG | 0.526186 | 4_4:+78244778 | None:intergenic |
| TGAAGTGACGTACCATAGAA+AGG | 0.527586 | 4_4:+78244603 | None:intergenic |
| AGTCCACATAAGTTTCTTGG+TGG | 0.530242 | 4_4:-78243470 | Msa0705510:CDS |
| AATGAAGACTGAGAAATTTG+AGG | 0.532113 | 4_4:-78242314 | Msa0705510:CDS |
| AACATTTCTAATCATTTACT+GGG | 0.533000 | 4_4:-78242268 | Msa0705510:CDS |
| CATGGAGAACATAGAAGAGA+GGG | 0.537066 | 4_4:-78243137 | Msa0705510:CDS |
| AGCTTTGAAGCTGCAACTTG+AGG | 0.539004 | 4_4:-78243780 | Msa0705510:CDS |
| ATTAAGAAATGCTTAGGTGG+TGG | 0.549911 | 4_4:-78244049 | Msa0705510:CDS |
| TTTCCTTATTACATGAGTGA+AGG | 0.550089 | 4_4:-78242436 | Msa0705510:CDS |
| TAGATTTGAATGATGCTCAT+GGG | 0.551631 | 4_4:+78243874 | None:intergenic |
| TGATGAACAAGGCTTTGTAT+CGG | 0.551815 | 4_4:-78243424 | Msa0705510:CDS |
| TATAGCTTCAACTTGAGGAA+TGG | 0.552150 | 4_4:-78242346 | Msa0705510:CDS |
| AGATTGGCTTAGATGATGAA+GGG | 0.558204 | 4_4:-78243817 | Msa0705510:CDS |
| TGTGGAGATTGACATGGGAT+CGG | 0.560434 | 4_4:-78243525 | Msa0705510:CDS |
| TAAGCAATGCTGCAACAAAA+GGG | 0.561644 | 4_4:+78242801 | None:intergenic |
| TTGTTCATCAAAAGTACTCC+CGG | 0.566646 | 4_4:+78243437 | None:intergenic |
| TTGGCATTCAAGCTCGAGGA+GGG | 0.569666 | 4_4:-78242769 | Msa0705510:CDS |
| TTGAGTAATTCGTGTCCGTA+AGG | 0.573220 | 4_4:+78242731 | None:intergenic |
| GTAGATTTGAATGATGCTCA+TGG | 0.576542 | 4_4:+78243873 | None:intergenic |
| AGTTGTAGCCAAGAACATGA+AGG | 0.580235 | 4_4:-78242878 | Msa0705510:CDS |
| AATGATGCAATCATCTTCTG+TGG | 0.582378 | 4_4:-78244022 | Msa0705510:CDS |
| GAAATTTGAGGCAGTAAACA+AGG | 0.585681 | 4_4:-78242302 | Msa0705510:CDS |
| CCTTAGCAAAGAAGAAAGAT+GGG | 0.592823 | 4_4:-78243912 | Msa0705510:CDS |
| CCCATGTCAATCTCCACATA+CGG | 0.596876 | 4_4:+78243530 | None:intergenic |
| TGAGAGTATAGCTTGTCGCT+TGG | 0.598417 | 4_4:+78242943 | None:intergenic |
| TACATTAAGAAATGCTTAGG+TGG | 0.598713 | 4_4:-78244052 | Msa0705510:CDS |
| GTTGTAGCCAAGAACATGAA+GGG | 0.601267 | 4_4:-78242877 | Msa0705510:CDS |
| GGACCACCAAGAAACTTATG+TGG | 0.601552 | 4_4:+78243467 | None:intergenic |
| ATATCGGAGTAAAACCTGGA+TGG | 0.602940 | 4_4:-78242471 | Msa0705510:CDS |
| TGGAGATTGACATGGGATCG+GGG | 0.603046 | 4_4:-78243523 | Msa0705510:CDS |
| AATGTAGGACACATTATACA+TGG | 0.608096 | 4_4:-78243155 | Msa0705510:intron |
| TATCAGATCAGCTGTTCAAG+AGG | 0.608116 | 4_4:-78242684 | Msa0705510:intron |
| CATAGAAGAGAGGGAAAATG+GGG | 0.611369 | 4_4:-78243128 | Msa0705510:CDS |
| GCAACAAAAGGGCCATGAAG+CGG | 0.613749 | 4_4:+78242812 | None:intergenic |
| AATAAACATTGATGTTGATG+TGG | 0.627365 | 4_4:-78242230 | Msa0705510:CDS |
| CATACTTGCGACAGTTATGT+GGG | 0.627569 | 4_4:-78244112 | Msa0705510:CDS |
| ACATGGAGAACATAGAAGAG+AGG | 0.633521 | 4_4:-78243138 | Msa0705510:CDS |
| CCGCCTCCACAAGTGGATGG+GGG | 0.634171 | 4_4:+78243389 | None:intergenic |
| ATTAGCTCAAAGTCAGAACA+AGG | 0.639611 | 4_4:-78244907 | Msa0705510:CDS |
| TTGTAGCCAAGAACATGAAG+GGG | 0.640366 | 4_4:-78242876 | Msa0705510:CDS |
| TTTGGCATTCAAGCTCGAGG+AGG | 0.643266 | 4_4:-78242770 | Msa0705510:CDS |
| GCTATGATCTCTGCTAACAA+TGG | 0.646161 | 4_4:+78244933 | None:intergenic |
| AGATTTGAATGATGCTCATG+GGG | 0.647917 | 4_4:+78243875 | None:intergenic |
| AGAACAACTGTACATTAACA+AGG | 0.663044 | 4_4:-78243020 | Msa0705510:CDS |
| TCCGTATGTGGAGATTGACA+TGG | 0.668606 | 4_4:-78243531 | Msa0705510:CDS |
| TGTAGCCAAGAACATGAAGG+GGG | 0.677946 | 4_4:-78242875 | Msa0705510:CDS |
| GCAGAGAAAGATCCTAACAA+TGG | 0.679049 | 4_4:+78243737 | None:intergenic |
| TAGCAAAGAAGAAAGATGGG+TGG | 0.689815 | 4_4:-78243909 | Msa0705510:CDS |
| GCCTTGTAATGAAACCGTGG+AGG | 0.696182 | 4_4:-78244775 | Msa0705510:CDS |
| CCGTATGTGGAGATTGACAT+GGG | 0.708084 | 4_4:-78243530 | Msa0705510:CDS |
| AGATTGACATGGGATCGGGG+AGG | 0.726964 | 4_4:-78243520 | Msa0705510:CDS |
| CCTGCCTTGTAATGAAACCG+TGG | 0.727497 | 4_4:-78244778 | Msa0705510:CDS |
| GTAGCCAAGAACATGAAGGG+GGG | 0.736383 | 4_4:-78242874 | Msa0705510:CDS |
| CAAGAAATAGGGAACCAGAG+AGG | 0.736727 | 4_4:-78242839 | Msa0705510:CDS |
| GTTTCTTAAAGGATTCAGGG+TGG | 0.746810 | 4_4:+78244814 | None:intergenic |
| ATAGAAGAGAGGGAAAATGG+GGG | 0.783358 | 4_4:-78243127 | Msa0705510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTTCATTGAATATA+AGG | + | chr4_4:78243710-78243729 | None:intergenic | 10.0% |
| !! | ATTATTATCATATACTTCAT+GGG | + | chr4_4:78242516-78242535 | None:intergenic | 15.0% |
| !! | TATTATTATCATATACTTCA+TGG | + | chr4_4:78242517-78242536 | None:intergenic | 15.0% |
| !! | ATTTAAGCTAAAAAATATCA+AGG | + | chr4_4:78244268-78244287 | None:intergenic | 15.0% |
| !!! | ACTAAAATTGTTTATTGTTT+TGG | - | chr4_4:78244396-78244415 | Msa0705510:intron | 15.0% |
| !!! | TTTTATTTGCCTAAAGTTTT+TGG | - | chr4_4:78242399-78242418 | Msa0705510:CDS | 20.0% |
| !!! | TTAATTTGATTTGTCAATTG+TGG | - | chr4_4:78243298-78243317 | Msa0705510:intron | 20.0% |
| !!! | TTTGATGACATAGTAATTAA+TGG | - | chr4_4:78243340-78243359 | Msa0705510:intron | 20.0% |
| !!! | AGTTTTTCTTTTAAATGCTT+TGG | + | chr4_4:78244379-78244398 | None:intergenic | 20.0% |
| !! | AACATTTCTAATCATTTACT+GGG | - | chr4_4:78244640-78244659 | Msa0705510:CDS | 20.0% |
| !! | GTATGTTCATAAATAATGTT+TGG | + | chr4_4:78244949-78244968 | None:intergenic | 20.0% |
| !!! | TTCTAATATGTTGCTTGTTT+TGG | + | chr4_4:78242054-78242073 | None:intergenic | 25.0% |
| ! | CTCTACAATATATGCTAATA+TGG | - | chr4_4:78242349-78242368 | Msa0705510:CDS | 25.0% |
| ! | ACACCAAGATATATAATCAT+AGG | + | chr4_4:78242375-78242394 | None:intergenic | 25.0% |
| !!! | ACACTATATTTGTTGTTCAT+TGG | + | chr4_4:78242465-78242484 | None:intergenic | 25.0% |
| ! | TCAATTAAGTCTCTCAATAT+TGG | + | chr4_4:78242661-78242680 | None:intergenic | 25.0% |
| !!! | ATTTTTTCCATCAACCTAAA+TGG | + | chr4_4:78242699-78242718 | None:intergenic | 25.0% |
| !!! | TCTTTTAGCTTTGTTATTCT+TGG | - | chr4_4:78242761-78242780 | Msa0705510:CDS | 25.0% |
| ! | AAAAGACTTCAAGAAGTAAT+GGG | - | chr4_4:78242931-78242950 | Msa0705510:CDS | 25.0% |
| ! | ATCATTCAAATCTACTTTCT+TGG | - | chr4_4:78243043-78243062 | Msa0705510:CDS | 25.0% |
| !!! | ATGCTTTTTCACAAATACAA+AGG | - | chr4_4:78243240-78243259 | Msa0705510:intron | 25.0% |
| !!! | AATTAATGGCTTTTGTTTAG+TGG | - | chr4_4:78243354-78243373 | Msa0705510:intron | 25.0% |
| !!! | GTGAAAGTTTTTTTGTTAGT+CGG | - | chr4_4:78243590-78243609 | Msa0705510:intron | 25.0% |
| ! | AACACTGAAAAACTTTCTTT+AGG | + | chr4_4:78243616-78243635 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTGTTGTTGATTA+GGG | - | chr4_4:78243624-78243643 | Msa0705510:intron | 25.0% |
| !!! | TTAATTTGTGGCAAGAAATA+GGG | - | chr4_4:78244058-78244077 | Msa0705510:CDS | 25.0% |
| !! | TTTTTACTCTTATGTACTCA+TGG | - | chr4_4:78244322-78244341 | Msa0705510:intron | 25.0% |
| !!! | TTTCTTTTAAATGCTTTGGA+AGG | + | chr4_4:78244375-78244394 | None:intergenic | 25.0% |
| !!! | GTTTATTGTTTTGGATCTTT+TGG | - | chr4_4:78244405-78244424 | Msa0705510:intron | 25.0% |
| !!! | ATAGAGTTTTTAGCTGTATA+TGG | - | chr4_4:78244520-78244539 | Msa0705510:intron | 25.0% |
| ! | CAACATTTCTAATCATTTAC+TGG | - | chr4_4:78244639-78244658 | Msa0705510:CDS | 25.0% |
| ! | AATAAACATTGATGTTGATG+TGG | - | chr4_4:78244678-78244697 | Msa0705510:CDS | 25.0% |
| !!! | AAATTCAAACTCTAAAGTAG+AGG | + | chr4_4:78244810-78244829 | None:intergenic | 25.0% |
| !!! | CTACTTTAGAGTTTGAATTT+TGG | - | chr4_4:78244810-78244829 | Msa0705510:CDS | 25.0% |
| !!! | TTGTTTTGGATAAAGGTACA+TGG | + | chr4_4:78242040-78242059 | None:intergenic | 30.0% |
| !!! | ATGTTGCTTGTTTTGGATAA+AGG | + | chr4_4:78242047-78242066 | None:intergenic | 30.0% |
| CAAGTTTCTTAAAGGATTCA+GGG | + | chr4_4:78242100-78242119 | None:intergenic | 30.0% | |
| ACAAGTTTCTTAAAGGATTC+AGG | + | chr4_4:78242101-78242120 | None:intergenic | 30.0% | |
| ! | TGAATCCTTTAAGAAACTTG+TGG | - | chr4_4:78242100-78242119 | Msa0705510:intron | 30.0% |
| CATTTCCACAAGTTTCTTAA+AGG | + | chr4_4:78242108-78242127 | None:intergenic | 30.0% | |
| ! | CTTTAAGAAACTTGTGGAAA+TGG | - | chr4_4:78242106-78242125 | Msa0705510:intron | 30.0% |
| AATCATCTTCTTCCTTTCTA+TGG | - | chr4_4:78242293-78242312 | Msa0705510:CDS | 30.0% | |
| TGGCCTATGATTATATATCT+TGG | - | chr4_4:78242369-78242388 | Msa0705510:CDS | 30.0% | |
| !! | TTATTAGAGGAAGTTTTGGT+TGG | + | chr4_4:78242634-78242653 | None:intergenic | 30.0% |
| ! | TCTCTTATTAGAGGAAGTTT+TGG | + | chr4_4:78242638-78242657 | None:intergenic | 30.0% |
| ! | CAATATTGGTCTCTTATTAG+AGG | + | chr4_4:78242647-78242666 | None:intergenic | 30.0% |
| GAGTACATTAAGAAATGCTT+AGG | - | chr4_4:78242853-78242872 | Msa0705510:CDS | 30.0% | |
| TACATTAAGAAATGCTTAGG+TGG | - | chr4_4:78242856-78242875 | Msa0705510:CDS | 30.0% | |
| ! | TACTTCTTGAAGTCTTTTGA+TGG | + | chr4_4:78242929-78242948 | None:intergenic | 30.0% |
| CAAAAGACTTCAAGAAGTAA+TGG | - | chr4_4:78242930-78242949 | Msa0705510:CDS | 30.0% | |
| ! | ATCCTTTCTCTAAGAATAGA+AGG | + | chr4_4:78242967-78242986 | None:intergenic | 30.0% |
| TAGATTTGAATGATGCTCAT+GGG | + | chr4_4:78243037-78243056 | None:intergenic | 30.0% | |
| ATTCAAATCTACTTTCTTGG+AGG | - | chr4_4:78243046-78243065 | Msa0705510:CDS | 30.0% | |
| TGGTCGATTAGTATCTTTAT+AGG | + | chr4_4:78243154-78243173 | None:intergenic | 30.0% | |
| !! | GTTTTTCAGTGTTGTTGATT+AGG | - | chr4_4:78243623-78243642 | Msa0705510:intron | 30.0% |
| !! | AAATTAAAAGTACTCCCTAG+TGG | + | chr4_4:78243668-78243687 | None:intergenic | 30.0% |
| TCATTGAATATAAGGTGAAG+AGG | + | chr4_4:78243702-78243721 | None:intergenic | 30.0% | |
| TTCATATGTGTGATCAATGT+AGG | - | chr4_4:78243738-78243757 | Msa0705510:CDS | 30.0% | |
| AATGTAGGACACATTATACA+TGG | - | chr4_4:78243753-78243772 | Msa0705510:CDS | 30.0% | |
| TCACTGTTTGGATTATTTGA+GGG | + | chr4_4:78243810-78243829 | None:intergenic | 30.0% | |
| !!! | TTTTGGGTTAAAGAGTACAT+TGG | - | chr4_4:78243844-78243863 | Msa0705510:CDS | 30.0% |
| AGAACAACTGTACATTAACA+AGG | - | chr4_4:78243888-78243907 | Msa0705510:CDS | 30.0% | |
| TTTCCCAAAATCTTGATGTT+GGG | + | chr4_4:78243937-78243956 | None:intergenic | 30.0% | |
| ATCAATTGATGAGCAAGAAT+TGG | + | chr4_4:78244010-78244029 | None:intergenic | 30.0% | |
| !! | CTTAATTTGTGGCAAGAAAT+AGG | - | chr4_4:78244057-78244076 | Msa0705510:CDS | 30.0% |
| !! | CATGCAGTTTTGTAATTTGT+AGG | + | chr4_4:78244350-78244369 | None:intergenic | 30.0% |
| CTACAAATTACAAAACTGCA+TGG | - | chr4_4:78244348-78244367 | Msa0705510:intron | 30.0% | |
| TTTCCTTATTACATGAGTGA+AGG | - | chr4_4:78244472-78244491 | Msa0705510:intron | 30.0% | |
| TATATAGAGGAAAGAACCTT+TGG | + | chr4_4:78244546-78244565 | None:intergenic | 30.0% | |
| AATGAAGACTGAGAAATTTG+AGG | - | chr4_4:78244594-78244613 | Msa0705510:intron | 30.0% | |
| GAACCAAACTTATTTAGATG+TGG | - | chr4_4:78244711-78244730 | Msa0705510:CDS | 30.0% | |
| !! | ACTCTAAAGTAGAGGATATT+GGG | + | chr4_4:78244802-78244821 | None:intergenic | 30.0% |
| !! | AACTCTAAAGTAGAGGATAT+TGG | + | chr4_4:78244803-78244822 | None:intergenic | 30.0% |
| AAAATTCAAACTCTTAGTGC+CGG | + | chr4_4:78244903-78244922 | None:intergenic | 30.0% | |
| ATTAGCTCAAAGTCAGAACA+AGG | - | chr4_4:78242001-78242020 | Msa0705510:intron | 35.0% | |
| ! | ACAAGTTTTCGTCTTCCAAA+TGG | + | chr4_4:78242215-78242234 | None:intergenic | 35.0% |
| TATAGCGCTCCAAAAACTTT+AGG | + | chr4_4:78242411-78242430 | None:intergenic | 35.0% | |
| ! | TTTGGTTGGTCACAACTATT+TGG | + | chr4_4:78242620-78242639 | None:intergenic | 35.0% |
| GATTTGCAACCAAACCATTT+AGG | - | chr4_4:78242682-78242701 | Msa0705510:intron | 35.0% | |
| !! | AACCAAACCATTTAGGTTGA+TGG | - | chr4_4:78242689-78242708 | Msa0705510:CDS | 35.0% |
| TTCCATCAACCTAAATGGTT+TGG | + | chr4_4:78242694-78242713 | None:intergenic | 35.0% | |
| !! | TAGCTTTGTTATTCTTGGAC+AGG | - | chr4_4:78242766-78242785 | Msa0705510:CDS | 35.0% |
| !! | AGCTTTGTTATTCTTGGACA+GGG | - | chr4_4:78242767-78242786 | Msa0705510:CDS | 35.0% |
| ATTAAGAAATGCTTAGGTGG+TGG | - | chr4_4:78242859-78242878 | Msa0705510:CDS | 35.0% | |
| AATGATGCAATCATCTTCTG+TGG | - | chr4_4:78242886-78242905 | Msa0705510:CDS | 35.0% | |
| TGCCTTCTATTCTTAGAGAA+AGG | - | chr4_4:78242962-78242981 | Msa0705510:CDS | 35.0% | |
| CCTTAGCAAAGAAGAAAGAT+GGG | - | chr4_4:78242996-78243015 | Msa0705510:CDS | 35.0% | |
| AGATTTGAATGATGCTCATG+GGG | + | chr4_4:78243036-78243055 | None:intergenic | 35.0% | |
| GTAGATTTGAATGATGCTCA+TGG | + | chr4_4:78243038-78243057 | None:intergenic | 35.0% | |
| !! | AGATTGGCTTAGATGATGAA+GGG | - | chr4_4:78243091-78243110 | Msa0705510:CDS | 35.0% |
| GATACTAATCGACCATTGTT+AGG | - | chr4_4:78243159-78243178 | Msa0705510:intron | 35.0% | |
| TCTGCTTGTAGTAATGTAAC+TGG | - | chr4_4:78243189-78243208 | Msa0705510:intron | 35.0% | |
| !!! | CATGTTTTGATTTTGCAGCA+AGG | - | chr4_4:78243268-78243287 | Msa0705510:intron | 35.0% |
| ! | CAAGAAACTTATGTGGACTA+AGG | + | chr4_4:78243437-78243456 | None:intergenic | 35.0% |
| CTTAGTCCACATAAGTTTCT+TGG | - | chr4_4:78243435-78243454 | Msa0705510:CDS | 35.0% | |
| !! | TTGTTCATCAAAAGTACTCC+CGG | + | chr4_4:78243474-78243493 | None:intergenic | 35.0% |
| ! | TGATGAACAAGGCTTTGTAT+CGG | - | chr4_4:78243484-78243503 | Msa0705510:CDS | 35.0% |
| TGTCAATGCATTCGATGAAA+AGG | - | chr4_4:78243554-78243573 | Msa0705510:intron | 35.0% | |
| ! | TGTGATTTTATGCAACCACT+AGG | - | chr4_4:78243650-78243669 | Msa0705510:CDS | 35.0% |
| ! | GTGATTTTATGCAACCACTA+GGG | - | chr4_4:78243651-78243670 | Msa0705510:CDS | 35.0% |
| AACATAGAAGAGAGGGAAAA+TGG | - | chr4_4:78243778-78243797 | Msa0705510:CDS | 35.0% | |
| ACATAGAAGAGAGGGAAAAT+GGG | - | chr4_4:78243779-78243798 | Msa0705510:CDS | 35.0% | |
| CACTGTTTGGATTATTTGAG+GGG | + | chr4_4:78243809-78243828 | None:intergenic | 35.0% | |
| CTCACTGTTTGGATTATTTG+AGG | + | chr4_4:78243811-78243830 | None:intergenic | 35.0% | |
| ! | AACCCCAACATCAAGATTTT+GGG | - | chr4_4:78243931-78243950 | Msa0705510:CDS | 35.0% |
| TTCCCAAAATCTTGATGTTG+GGG | + | chr4_4:78243936-78243955 | None:intergenic | 35.0% | |
| GTTTCCCAAAATCTTGATGT+TGG | + | chr4_4:78243938-78243957 | None:intergenic | 35.0% | |
| TAAGCAATGCTGCAACAAAA+GGG | + | chr4_4:78244110-78244129 | None:intergenic | 35.0% | |
| TTAAGCAATGCTGCAACAAA+AGG | + | chr4_4:78244111-78244130 | None:intergenic | 35.0% | |
| ! | GCATTGCTTAATGACCTTTT+TGG | - | chr4_4:78244120-78244139 | Msa0705510:CDS | 35.0% |
| !! | TGTTTTGGATCTTTTGGTAC+AGG | - | chr4_4:78244411-78244430 | Msa0705510:intron | 35.0% |
| !! | GTTTTGGATCTTTTGGTACA+GGG | - | chr4_4:78244412-78244431 | Msa0705510:intron | 35.0% |
| TCACCTTCACTCATGTAATA+AGG | + | chr4_4:78244478-78244497 | None:intergenic | 35.0% | |
| !! | TTTTAGCTGTATATGGCCAA+AGG | - | chr4_4:78244527-78244546 | Msa0705510:intron | 35.0% |
| !! | CTCAAGTTGAAGCTATATAG+AGG | + | chr4_4:78244559-78244578 | None:intergenic | 35.0% |
| CTCTATATAGCTTCAACTTG+AGG | - | chr4_4:78244557-78244576 | Msa0705510:intron | 35.0% | |
| TATAGCTTCAACTTGAGGAA+TGG | - | chr4_4:78244562-78244581 | Msa0705510:intron | 35.0% | |
| ! | GAAATTTGAGGCAGTAAACA+AGG | - | chr4_4:78244606-78244625 | Msa0705510:intron | 35.0% |
| TGGCCACATCTAAATAAGTT+TGG | + | chr4_4:78244717-78244736 | None:intergenic | 35.0% | |
| GAGGCTACTAGCAATATATT+TGG | + | chr4_4:78244737-78244756 | None:intergenic | 35.0% | |
| AAATTCAAACTCTTAGTGCC+GGG | + | chr4_4:78244902-78244921 | None:intergenic | 35.0% | |
| ! | GGCACTAAGAGTTTGAATTT+TGG | - | chr4_4:78244902-78244921 | Msa0705510:CDS | 35.0% |
| GCTATGATCTCTGCTAACAA+TGG | + | chr4_4:78241978-78241997 | None:intergenic | 40.0% | |
| AGTCAGAACAAGGCCAAAAA+TGG | - | chr4_4:78242011-78242030 | Msa0705510:intron | 40.0% | |
| GTCAGAACAAGGCCAAAAAT+GGG | - | chr4_4:78242012-78242031 | Msa0705510:intron | 40.0% | |
| TCAGAACAAGGCCAAAAATG+GGG | - | chr4_4:78242013-78242032 | Msa0705510:intron | 40.0% | |
| GTTTCTTAAAGGATTCAGGG+TGG | + | chr4_4:78242097-78242116 | None:intergenic | 40.0% | |
| !! | AGGAAAAACTGTGTTGGTTG+CGG | - | chr4_4:78242153-78242172 | Msa0705510:intron | 40.0% |
| GCAGAGTTTGATTCTCCATT+TGG | - | chr4_4:78242197-78242216 | Msa0705510:intron | 40.0% | |
| TGAAGTGACGTACCATAGAA+AGG | + | chr4_4:78242308-78242327 | None:intergenic | 40.0% | |
| TCATACTTGCGACAGTTATG+TGG | - | chr4_4:78242795-78242814 | Msa0705510:CDS | 40.0% | |
| CATACTTGCGACAGTTATGT+GGG | - | chr4_4:78242796-78242815 | Msa0705510:CDS | 40.0% | |
| GCCTTAGCAAAGAAGAAAGA+TGG | - | chr4_4:78242995-78243014 | Msa0705510:CDS | 40.0% | |
| CCCATCTTTCTTCTTTGCTA+AGG | + | chr4_4:78242999-78243018 | None:intergenic | 40.0% | |
| TAGCAAAGAAGAAAGATGGG+TGG | - | chr4_4:78242999-78243018 | Msa0705510:CDS | 40.0% | |
| ! | GAAAGATGGGTGGTTTTTGT+AGG | - | chr4_4:78243009-78243028 | Msa0705510:CDS | 40.0% |
| !! | GAGATTGGCTTAGATGATGA+AGG | - | chr4_4:78243090-78243109 | Msa0705510:CDS | 40.0% |
| TGATGAAGGGTTGCTTGATA+TGG | - | chr4_4:78243104-78243123 | Msa0705510:CDS | 40.0% | |
| GCAGAGAAAGATCCTAACAA+TGG | + | chr4_4:78243174-78243193 | None:intergenic | 40.0% | |
| TTTGTTTAGTGGTCCGTATG+TGG | - | chr4_4:78243365-78243384 | Msa0705510:CDS | 40.0% | |
| AGTCCACATAAGTTTCTTGG+TGG | - | chr4_4:78243438-78243457 | Msa0705510:CDS | 40.0% | |
| !!! | GGGAGTACTTTTGATGAACA+AGG | - | chr4_4:78243473-78243492 | Msa0705510:CDS | 40.0% |
| ACATGGAGAACATAGAAGAG+AGG | - | chr4_4:78243770-78243789 | Msa0705510:CDS | 40.0% | |
| CATGGAGAACATAGAAGAGA+GGG | - | chr4_4:78243771-78243790 | Msa0705510:CDS | 40.0% | |
| CATAGAAGAGAGGGAAAATG+GGG | - | chr4_4:78243780-78243799 | Msa0705510:CDS | 40.0% | |
| ATAGAAGAGAGGGAAAATGG+GGG | - | chr4_4:78243781-78243800 | Msa0705510:CDS | 40.0% | |
| !!! | TGAGAGCATCGTTAGCATTT+TGG | - | chr4_4:78243827-78243846 | Msa0705510:CDS | 40.0% |
| !!! | GAGAGCATCGTTAGCATTTT+GGG | - | chr4_4:78243828-78243847 | Msa0705510:CDS | 40.0% |
| CAAAATCTTGATGTTGGGGT+TGG | + | chr4_4:78243932-78243951 | None:intergenic | 40.0% | |
| ! | CAACCCCAACATCAAGATTT+TGG | - | chr4_4:78243930-78243949 | Msa0705510:CDS | 40.0% |
| AGTTGTAGCCAAGAACATGA+AGG | - | chr4_4:78244030-78244049 | Msa0705510:CDS | 40.0% | |
| GTTGTAGCCAAGAACATGAA+GGG | - | chr4_4:78244031-78244050 | Msa0705510:CDS | 40.0% | |
| TTGTAGCCAAGAACATGAAG+GGG | - | chr4_4:78244032-78244051 | Msa0705510:CDS | 40.0% | |
| TTGAGTAATTCGTGTCCGTA+AGG | + | chr4_4:78244180-78244199 | None:intergenic | 40.0% | |
| TATCAGATCAGCTGTTCAAG+AGG | - | chr4_4:78244224-78244243 | Msa0705510:intron | 40.0% | |
| ! | CTTTTGGTACAGGGCTATAT+CGG | - | chr4_4:78244421-78244440 | Msa0705510:intron | 40.0% |
| ATATCGGAGTAAAACCTGGA+TGG | - | chr4_4:78244437-78244456 | Msa0705510:intron | 40.0% | |
| AAACTAACTCTTGTCCATCC+AGG | + | chr4_4:78244454-78244473 | None:intergenic | 40.0% | |
| TCAACTTGAGGAATGGAAGT+TGG | - | chr4_4:78244569-78244588 | Msa0705510:intron | 40.0% | |
| GGGAATATTGCAGGAAGAAA+TGG | - | chr4_4:78244774-78244793 | Msa0705510:CDS | 40.0% | |
| TGAGAAGTCACTTGATTGCA+AGG | - | chr4_4:78244842-78244861 | Msa0705510:CDS | 40.0% | |
| AGGTTTGACCTACAACCTAT+AGG | - | chr4_4:78244862-78244881 | Msa0705510:CDS | 40.0% | |
| ACCTACAACCTATAGGTACT+CGG | - | chr4_4:78244869-78244888 | Msa0705510:CDS | 40.0% | |
| ! | AGGTACATGGTCCCCATTTT+TGG | + | chr4_4:78242027-78242046 | None:intergenic | 45.0% |
| TCCTCCACGGTTTCATTACA+AGG | + | chr4_4:78242137-78242156 | None:intergenic | 45.0% | |
| ! | CCAACACAGTTTTTCCTCCA+CGG | + | chr4_4:78242150-78242169 | None:intergenic | 45.0% |
| TGGTTGCGGTCTCAAATCAT+AGG | - | chr4_4:78242167-78242186 | Msa0705510:intron | 45.0% | |
| ACTTTCTTGGAGGCAGAGTT+TGG | - | chr4_4:78243056-78243075 | Msa0705510:CDS | 45.0% | |
| TTGGCAGAGGTTGTAGAGAT+TGG | - | chr4_4:78243075-78243094 | Msa0705510:CDS | 45.0% | |
| !! | AGCTTTGAAGCTGCAACTTG+AGG | - | chr4_4:78243128-78243147 | Msa0705510:CDS | 45.0% |
| TCCGTATGTGGAGATTGACA+TGG | - | chr4_4:78243377-78243396 | Msa0705510:CDS | 45.0% | |
| CCCATGTCAATCTCCACATA+CGG | + | chr4_4:78243381-78243400 | None:intergenic | 45.0% | |
| CCGTATGTGGAGATTGACAT+GGG | - | chr4_4:78243378-78243397 | Msa0705510:CDS | 45.0% | |
| TGTGGAGATTGACATGGGAT+CGG | - | chr4_4:78243383-78243402 | Msa0705510:CDS | 45.0% | |
| GGACCACCAAGAAACTTATG+TGG | + | chr4_4:78243444-78243463 | None:intergenic | 45.0% | |
| !! | AAAAGTACTCCCGGAGAATC+AGG | + | chr4_4:78243465-78243484 | None:intergenic | 45.0% |
| CTAACGATGCTCTCACTGTT+TGG | + | chr4_4:78243822-78243841 | None:intergenic | 45.0% | |
| ! | TGAGAGTATAGCTTGTCGCT+TGG | + | chr4_4:78243968-78243987 | None:intergenic | 45.0% |
| TGTAGCCAAGAACATGAAGG+GGG | - | chr4_4:78244033-78244052 | Msa0705510:CDS | 45.0% | |
| ! | ATGAAGGGGGGCTTAATTTG+TGG | - | chr4_4:78244046-78244065 | Msa0705510:CDS | 45.0% |
| CAAGAAATAGGGAACCAGAG+AGG | - | chr4_4:78244069-78244088 | Msa0705510:CDS | 45.0% | |
| CTCGAGCTTGAATGCCAAAA+AGG | + | chr4_4:78244137-78244156 | None:intergenic | 45.0% | |
| !! | CTTTTTGGCATTCAAGCTCG+AGG | - | chr4_4:78244135-78244154 | Msa0705510:intron | 45.0% |
| GGCTATATCGGAGTAAAACC+TGG | - | chr4_4:78244433-78244452 | Msa0705510:intron | 45.0% | |
| ATGTTGATGTGGCTGTGAGA+AGG | - | chr4_4:78244689-78244708 | Msa0705510:CDS | 45.0% | |
| TTCCCTGAGGTGGAAACTTA+GGG | + | chr4_4:78244759-78244778 | None:intergenic | 45.0% | |
| ATTCCCTGAGGTGGAAACTT+AGG | + | chr4_4:78244760-78244779 | None:intergenic | 45.0% | |
| TCTTCCTGCAATATTCCCTG+AGG | + | chr4_4:78244772-78244791 | None:intergenic | 45.0% | |
| ACCGAGTACCTATAGGTTGT+AGG | + | chr4_4:78244873-78244892 | None:intergenic | 45.0% | |
| CCACGGTTTCATTACAAGGC+AGG | + | chr4_4:78242133-78242152 | None:intergenic | 50.0% | |
| CCTGCCTTGTAATGAAACCG+TGG | - | chr4_4:78242130-78242149 | Msa0705510:intron | 50.0% | |
| GCCTTGTAATGAAACCGTGG+AGG | - | chr4_4:78242133-78242152 | Msa0705510:intron | 50.0% | |
| CCGTGGAGGAAAAACTGTGT+TGG | - | chr4_4:78242147-78242166 | Msa0705510:intron | 50.0% | |
| TACGCTGATCACACTGCTTC+TGG | - | chr4_4:78242236-78242255 | Msa0705510:CDS | 50.0% | |
| GCAATCATCTTCTGTGGCTC+AGG | - | chr4_4:78242892-78242911 | Msa0705510:CDS | 50.0% | |
| GTGGAGATTGACATGGGATC+GGG | - | chr4_4:78243384-78243403 | Msa0705510:CDS | 50.0% | |
| TGGAGATTGACATGGGATCG+GGG | - | chr4_4:78243385-78243404 | Msa0705510:CDS | 50.0% | |
| ! | TCTTGGTGGTCCTGATTCTC+CGG | - | chr4_4:78243452-78243471 | Msa0705510:CDS | 50.0% |
| GTAGCCAAGAACATGAAGGG+GGG | - | chr4_4:78244034-78244053 | Msa0705510:CDS | 50.0% | |
| TAAGCCCCCCTTCATGTTCT+TGG | + | chr4_4:78244041-78244060 | None:intergenic | 50.0% | |
| GCAACAAAAGGGCCATGAAG+CGG | + | chr4_4:78244099-78244118 | None:intergenic | 50.0% | |
| TTTGGCATTCAAGCTCGAGG+AGG | - | chr4_4:78244138-78244157 | Msa0705510:intron | 50.0% | |
| TTGGCATTCAAGCTCGAGGA+GGG | - | chr4_4:78244139-78244158 | Msa0705510:intron | 50.0% | |
| TGTGCTTGTGCTGGACCTTA+CGG | - | chr4_4:78244162-78244181 | Msa0705510:intron | 50.0% | |
| CTCCCTAAGTTTCCACCTCA+GGG | - | chr4_4:78244754-78244773 | Msa0705510:CDS | 50.0% | |
| TCCACCTCAGGGAATATTGC+AGG | - | chr4_4:78244765-78244784 | Msa0705510:CDS | 50.0% | |
| TCCTGCAATATTCCCTGAGG+TGG | + | chr4_4:78244769-78244788 | None:intergenic | 50.0% | |
| GTCTCGAACCGAGTACCTAT+AGG | + | chr4_4:78244880-78244899 | None:intergenic | 50.0% | |
| TTGGAGGCAGAGTTTGGCAG+AGG | - | chr4_4:78243062-78243081 | Msa0705510:CDS | 55.0% | |
| AGATTGACATGGGATCGGGG+AGG | - | chr4_4:78243388-78243407 | Msa0705510:CDS | 55.0% | |
| ATGGGATCGGGGAGGAATGA+TGG | - | chr4_4:78243396-78243415 | Msa0705510:CDS | 55.0% | |
| TGGGATCGGGGAGGAATGAT+GGG | - | chr4_4:78243397-78243416 | Msa0705510:CDS | 55.0% | |
| ! | CTTGGTGGTCCTGATTCTCC+GGG | - | chr4_4:78243453-78243472 | Msa0705510:CDS | 55.0% |
| TTCCGCCTCCACAAGTGGAT+GGG | + | chr4_4:78243524-78243543 | None:intergenic | 55.0% | |
| CCTGAGGTGGAAACTTAGGG+AGG | + | chr4_4:78244756-78244775 | None:intergenic | 55.0% | |
| CCTCCCTAAGTTTCCACCTC+AGG | - | chr4_4:78244753-78244772 | Msa0705510:CDS | 55.0% | |
| ! | TAGGTACTCGGTTCGAGACC+CGG | - | chr4_4:78244881-78244900 | Msa0705510:CDS | 55.0% |
| TCTTCGCCCCCATCCACTTG+TGG | - | chr4_4:78243513-78243532 | Msa0705510:CDS | 60.0% | |
| TCCGCCTCCACAAGTGGATG+GGG | + | chr4_4:78243523-78243542 | None:intergenic | 60.0% | |
| GTTCCGCCTCCACAAGTGGA+TGG | + | chr4_4:78243525-78243544 | None:intergenic | 60.0% | |
| GACAGTTCCGCCTCCACAAG+TGG | + | chr4_4:78243529-78243548 | None:intergenic | 60.0% | |
| CATGAAGCGGCTTGCCTCTC+TGG | + | chr4_4:78244086-78244105 | None:intergenic | 60.0% | |
| CAGAGAGGCAAGCCGCTTCA+TGG | - | chr4_4:78244084-78244103 | Msa0705510:CDS | 60.0% | |
| TCGCCCCCATCCACTTGTGG+AGG | - | chr4_4:78243516-78243535 | Msa0705510:CDS | 65.0% | |
| CCGCCTCCACAAGTGGATGG+GGG | + | chr4_4:78243522-78243541 | None:intergenic | 65.0% | |
| CCCCCATCCACTTGTGGAGG+CGG | - | chr4_4:78243519-78243538 | Msa0705510:CDS | 65.0% | |
| ! | CGAGGAGGGTGTGCTTGTGC+TGG | - | chr4_4:78244153-78244172 | Msa0705510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78241909 | 78245021 | 78241909 | ID=Msa0705510;Name=Msa0705510 |
| chr4_4 | mRNA | 78241909 | 78245021 | 78241909 | ID=Msa0705510-mRNA-1;Parent=Msa0705510;Name=Msa0705510-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.83|1|1|6|0|624 |
| chr4_4 | exon | 78244616 | 78245021 | 78244616 | ID=Msa0705510-mRNA-1:exon:24950;Parent=Msa0705510-mRNA-1 |
| chr4_4 | exon | 78243641 | 78244142 | 78243641 | ID=Msa0705510-mRNA-1:exon:24949;Parent=Msa0705510-mRNA-1 |
| chr4_4 | exon | 78243355 | 78243556 | 78243355 | ID=Msa0705510-mRNA-1:exon:24948;Parent=Msa0705510-mRNA-1 |
| chr4_4 | exon | 78242685 | 78243170 | 78242685 | ID=Msa0705510-mRNA-1:exon:24947;Parent=Msa0705510-mRNA-1 |
| chr4_4 | exon | 78242228 | 78242497 | 78242228 | ID=Msa0705510-mRNA-1:exon:24946;Parent=Msa0705510-mRNA-1 |
| chr4_4 | exon | 78241909 | 78241917 | 78241909 | ID=Msa0705510-mRNA-1:exon:24945;Parent=Msa0705510-mRNA-1 |
| chr4_4 | CDS | 78244616 | 78245021 | 78244616 | ID=Msa0705510-mRNA-1:cds;Parent=Msa0705510-mRNA-1 |
| chr4_4 | CDS | 78243641 | 78244142 | 78243641 | ID=Msa0705510-mRNA-1:cds;Parent=Msa0705510-mRNA-1 |
| chr4_4 | CDS | 78243355 | 78243556 | 78243355 | ID=Msa0705510-mRNA-1:cds;Parent=Msa0705510-mRNA-1 |
| chr4_4 | CDS | 78242685 | 78243170 | 78242685 | ID=Msa0705510-mRNA-1:cds;Parent=Msa0705510-mRNA-1 |
| chr4_4 | CDS | 78242228 | 78242497 | 78242228 | ID=Msa0705510-mRNA-1:cds;Parent=Msa0705510-mRNA-1 |
| chr4_4 | CDS | 78241909 | 78241917 | 78241909 | ID=Msa0705510-mRNA-1:cds;Parent=Msa0705510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
