AlfalfaGEDB | Msa1369070

M. sativa cultivar zhongmu-4 / Msa1369070

KEGG: -
GO: -
PFAM: PF00266.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369070	XP_003630258.2	95.039	645	32	0	1	645	18	662	0.0	1262

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369070	sp\|P99177\|CSD_STAAN	23.222	478	280	13	73	546	9	403	1.91e-20	97.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369070	G7LE12	95.039	645	32	0	1	645	18	662	0.0	1262

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0705510	Msa1369070	0.881830	1.731859e-70	-8.615850e-47
Msa1011320	Msa1369070	0.804860	1.763429e-49	-8.615850e-47
Msa1142850	Msa1369070	0.810695	1.014329e-50	-8.615850e-47
Msa1142860	Msa1369070	0.803393	3.562215e-49	-8.615850e-47
Msa1143720	Msa1369070	0.961350	1.339014e-119	-8.615850e-47
Msa1204190	Msa1369070	0.801280	9.701239e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369070	MtrunA17_Chr8g0384181	95.039	645	32	0	1	645	18	662	0.0	1262
Msa1369070	MtrunA17_Chr8g0384171	68.203	651	169	7	5	645	13	635	0.0	915

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 144 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTTCAAGAAGTAAT+GGG	0.426268	tig0018755:+5823	Msa1369070:CDS
AAAAGTACTCCCGGAGAATC+AGG	0.364713	tig0018755:-6354	None:intergenic
AAACTAACTCTTGTCCATCC+AGG	0.525967	tig0018755:-7340	None:intergenic
AAATTCAAACTCTAAAGTAG+AGG	0.632298	tig0018755:-7696	None:intergenic
AACATAGAAGAGAGGGAAAA+TGG	0.180904	tig0018755:+6668	Msa1369070:CDS
AACATTTCTAATCATTTACT+GGG	0.533000	tig0018755:+7529	Msa1369070:CDS
AACTCTAAAGTAGAGGATAG+TGG	0.466387	tig0018755:-7689	None:intergenic
AATAAACATTGATGTTGATG+TGG	0.627365	tig0018755:+7567	Msa1369070:CDS
AATCATCTTCTTCCTTTCTA+TGG	0.211262	tig0018755:+5185	Msa1369070:CDS
AATGAAGACTGAGAAATTTG+AGG	0.532113	tig0018755:+7483	Msa1369070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGTTTCTTAAAGGATTCA+GGG	-	tig0018755:4992-5011	None:intergenic	30.0%
ACAAGTTTCTTAAAGGATTC+AGG	-	tig0018755:4993-5012	None:intergenic	30.0%
CATTTCCACAAGTTTCTTAA+AGG	-	tig0018755:5000-5019	None:intergenic	30.0%
AATCATCTTCTTCCTTTCTA+TGG	+	tig0018755:5185-5204	Msa1369070:CDS	30.0%
CTCTACAATATATGCCAATA+TGG	+	tig0018755:5241-5260	Msa1369070:intron	30.0%
TGGCCTATGATTATATATCT+TGG	+	tig0018755:5261-5280	Msa1369070:intron	30.0%
GAGTACATTAAGAAATGCTT+AGG	+	tig0018755:5745-5764	Msa1369070:CDS	30.0%
TACATTAAGAAATGCTTAGG+TGG	+	tig0018755:5748-5767	Msa1369070:CDS	30.0%
CAAAAGACTTCAAGAAGTAA+TGG	+	tig0018755:5822-5841	Msa1369070:CDS	30.0%
TAGATTTGAATGATGCTCAT+GGG	-	tig0018755:5929-5948	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018755	gene	4852	7714	4852	ID=Msa1369070;Name=Msa1369070
tig0018755	mRNA	4852	7714	4852	ID=Msa1369070-mRNA-1;Parent=Msa1369070;Name=Msa1369070-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|1\|1\|1\|5\|0\|645
tig0018755	exon	4852	5206	4852	ID=Msa1369070-mRNA-1:exon:914;Parent=Msa1369070-mRNA-1
tig0018755	exon	5680	6181	5680	ID=Msa1369070-mRNA-1:exon:915;Parent=Msa1369070-mRNA-1
tig0018755	exon	6266	6467	6266	ID=Msa1369070-mRNA-1:exon:916;Parent=Msa1369070-mRNA-1
tig0018755	exon	6650	7135	6650	ID=Msa1369070-mRNA-1:exon:917;Parent=Msa1369070-mRNA-1
tig0018755	exon	7322	7714	7322	ID=Msa1369070-mRNA-1:exon:918;Parent=Msa1369070-mRNA-1
tig0018755	CDS	4852	5206	4852	ID=Msa1369070-mRNA-1:cds;Parent=Msa1369070-mRNA-1
tig0018755	CDS	5680	6181	5680	ID=Msa1369070-mRNA-1:cds;Parent=Msa1369070-mRNA-1
tig0018755	CDS	6266	6467	6266	ID=Msa1369070-mRNA-1:cds;Parent=Msa1369070-mRNA-1
tig0018755	CDS	6650	7135	6650	ID=Msa1369070-mRNA-1:cds;Parent=Msa1369070-mRNA-1
tig0018755	CDS	7322	7714	7322	ID=Msa1369070-mRNA-1:cds;Parent=Msa1369070-mRNA-1

Gene Sequence

>Msa1369070

ATGAAGATAGAACAACCATTGTTAGCAGAGATCATAGCTATATTAGCTCAAAGTCAGAACAAGGCCAAAAATGGGGACCATGTACCTTTATCCAAAACAAGCAACATATTAGAAACATCTCATGACTTTTGCTACCACCCTGAATCCTTTAAGAAACTTGTGGAAATGGACATGCCTTGTAATGAAACTGTGGAGGAAAAACTGTGTTGGTTGCGGTCTCAAATCATAGGTAATGATGCAGAGTTTGATTCTCCATTTGGAAGACGAAAACTTGTCTACGCTGATCACACTGCTTCTGGTCGTAGTCTTCGTTACAATGAAGATTTCATCATCAATCATCTTCTTCCTTTCTATGGGAACACTCATACTTGCGACAGTTATGTGGGAAGCAGAACAACAAAAATGCTACATGAAGCAACTGAGTACATTAAGAAATGCTTAGGTGGTGGAGAAAATGATGCAATCATCTTCTGTGGCTCAGGCACAACTGCATCCATCAAAAGACTTCAAGAAGTAATGGGAATTGCAGTGCCTTCTATTCTTAGAGAAAGGATGTTGAATAGCCTTAGCAAAGAAGAAAGATGGGTGGTTTTTGTAGGACCCCATGAGCATCATTCAAATCTACTTTCTTGGAGGCAGAGTTTGGCAGAGGTTGTAGAGATTGGCTTAGATGATGAAGGGTTGCTTGATATGGAAGCTTTGAAGCTGCAACTTGAGGCCTATAAAGATACTAATCGACCATTGTTAGGATCTTTCTCTGCTTGTAGTAATGTAACTGGAATCTACTCAGATACACGTGCAATTGCAATGCTTTTTCACAAATACAAAGGCTATGCATGTTTTGATTTTGCAGCAAGTGGTCCGTATGTGGAGATTGACATGGGATCAGGGAGGAATGATGGGTATGATGCTGTGTTCCTTAGTCCACATAAGTTTCTTGGTGGTCCTGATTCTCCGGGAGTACTTTTGATGAACAATGCTTTGTATCGGTTGAGATCTTCGCCCCCATCCACTTGTGGAGGCGGAACTGTCACTTATGTCAATGCATTCGATGAAAAGGACACATTATACATGGAGAACATAGAAGAGAGGGAAAATGGGGGCACCCCTCAAATAATCCAAACAGTGAGAGCATCGTTAGCATTTTGGGTTAAAGAGTACATTGGCTACAATGAGATAGAGAAAAGAGAACAACTGTACATTAACAAGGCACTCAAGAGACTTGTCACCAACCCCAACATCAAGATTTTGGGAAACTTAAACGCCAAGCGACAAGCTATACTCTCATTTCTCATCTACTCTACAACCAATTCTTGCTCATCAATTGATAGTTGTAGCCAAGAACATGAAGGGGGGCTTAATTTGTGGCAAGAAATAGGGAACCAGAGAGGCAAGCCGCTTCATGGCCCTTTTGTTGCAGCATTGCTTAATGACCTTTTTGGCATTCAAGCTCGAGGAGGGTGTGCTTGTGCTGGACCTTACGGACACGAATTACTCAACATCAATAAATCTCAATCACTTGCTATCAGATCAGCTGTTCAAGAGGGCTATATCGGAGTAAAACCTGGATGGACAAGAGTTAGTTTTCCTTATTACATGAGTGAAGGTGATTTTGATTACATTTTAAGTGCAATAGAGTTTTTAGCTGTATATGGCCAAAGGTTCTTTCCTCTATATACCTTCAACTTGAGGAATGGAAGTTGGAGAATGAAGACTGAGAAATTTGAGGCAGTAAACAAGGAAGACACTTGCAACATTTCTAATCATTTACTGGGAAAAAATCTAGAGAAAATAAACATTGATGTTGATGTGGCTGTGAGAAGGAACCAAACTTATTTAGATGTGGCCAAATATATTGCTAGTAGCCTCCCTAAGTTTCCACCTCAGGGAATATTGCAGGAAGAAATGGATCCCACTATCCTCTACTTTAGAGTTTGA

Protein sequence

>Msa1369070

MKIEQPLLAEIIAILAQSQNKAKNGDHVPLSKTSNILETSHDFCYHPESFKKLVEMDMPCNETVEEKLCWLRSQIIGNDAEFDSPFGRRKLVYADHTASGRSLRYNEDFIINHLLPFYGNTHTCDSYVGSRTTKMLHEATEYIKKCLGGGENDAIIFCGSGTTASIKRLQEVMGIAVPSILRERMLNSLSKEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDEGLLDMEALKLQLEAYKDTNRPLLGSFSACSNVTGIYSDTRAIAMLFHKYKGYACFDFAASGPYVEIDMGSGRNDGYDAVFLSPHKFLGGPDSPGVLLMNNALYRLRSSPPSTCGGGTVTYVNAFDEKDTLYMENIEERENGGTPQIIQTVRASLAFWVKEYIGYNEIEKREQLYINKALKRLVTNPNIKILGNLNAKRQAILSFLIYSTTNSCSSIDSCSQEHEGGLNLWQEIGNQRGKPLHGPFVAALLNDLFGIQARGGCACAGPYGHELLNINKSQSLAIRSAVQEGYIGVKPGWTRVSFPYYMSEGDFDYILSAIEFLAVYGQRFFPLYTFNLRNGSWRMKTEKFEAVNKEDTCNISNHLLGKNLEKINIDVDVAVRRNQTYLDVAKYIASSLPKFPPQGILQEEMDPTILYFRV*