AlfalfaGEDB | Msa1144820

M. sativa cultivar zhongmu-4 / Msa1144820

KEGG: -
GO: -
PFAM: PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144820	XP_003631077.1	94.328	335	13	4	1	329	1	335	0.0	629

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144820	sp\|Q9SUC9\|UGPI7_ARATH	41.328	271	129	6	33	296	26	273	1.06e-60	199

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144820	Q1SN14	94.328	335	13	4	1	329	1	335	0.0	629

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0575570	Msa1144820	0.916998	9.060781e-86	-8.615850e-47
Msa0650090	Msa1144820	0.803036	4.223051e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144820	MtrunA17_Chr8g0392751	94.328	335	13	4	1	329	1	335	0.0	629
Msa1144820	MtrunA17_Chr6g0482961	64.744	312	97	5	1	305	3	308	2.03e-133	383
Msa1144820	MtrunA17_Chr4g0022791	38.614	303	149	10	34	320	28	309	3.26e-60	195
Msa1144820	MtrunA17_Chr2g0323391	38.284	303	152	8	39	329	19	298	1.58e-57	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1144820	AT3G18050.1	55.060	336	113	10	12	329	11	326	7.70e-108	318
Msa1144820	AT4G28100.1	41.328	271	129	6	33	296	26	273	1.08e-61	199

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Find 88 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTGATCTCCTATCT+TGG	0.436673	7_4:-21326141	Msa1144820:three_prime_UTR
AAAATGAGAGATTCTATTAA+AGG	0.187880	7_4:+21325956	None:intergenic
AAATATACAAATGCCAAGAT+AGG	0.414288	7_4:+21326128	None:intergenic
AAATTACACTCCTAGTAGCT+AGG	0.563739	7_4:+21326088	None:intergenic
AACAAAGATTGTGGACTAAT+GGG	0.379439	7_4:-21326432	Msa1144820:CDS
AACATCAGCTTGTTCAGGAA+AGG	0.557995	7_4:+21328231	None:intergenic
AAGAAGAAGAGATATGGGTG+TGG	0.621729	7_4:+21328460	None:intergenic
AAGATCCATAACAAAGATTG+TGG	0.561040	7_4:-21326441	Msa1144820:CDS
AAGTAAAGATTGGTGCTTTG+AGG	0.419197	7_4:+21326232	None:intergenic
AATAACAAAGAAGTAAAGAT+TGG	0.476661	7_4:+21326222	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGAACAAGATCAGAATA+AGG	+	chr7_4:21326094-21326113	None:intergenic	30.0%
ACATAAAACTAACCGAATAG+AGG	+	chr7_4:21326718-21326737	None:intergenic	30.0%
TTAACCTTTCTTTACTTTGG+AGG	-	chr7_4:21326863-21326882	Msa1144820:intron	30.0%
TAACCTTTCTTTACTTTGGA+GGG	-	chr7_4:21326864-21326883	Msa1144820:intron	30.0%
ACTACAAGTACAAACACAAA+TGG	+	chr7_4:21327029-21327048	None:intergenic	30.0%
TAGAGAAAAAAATTTAGGGG+AGG	+	chr7_4:21327055-21327074	None:intergenic	30.0%
AGTAGGAAATGTGAATTAGA+GGG	+	chr7_4:21327414-21327433	None:intergenic	30.0%
AAGTAGGAAATGTGAATTAG+AGG	+	chr7_4:21327415-21327434	None:intergenic	30.0%
TTCCTACTTAACTCAGTTAT+TGG	-	chr7_4:21327426-21327445	Msa1144820:intron	30.0%
TTCCAATAACTGAGTTAAGT+AGG	+	chr7_4:21327431-21327450	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	21325966	21328491	21325966	ID=Msa1144820;Name=Msa1144820
chr7_4	mRNA	21325966	21328491	21325966	ID=Msa1144820-mRNA-1;Parent=Msa1144820;Name=Msa1144820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=96\|1\|1\|1\|1\|1\|2\|219\|329
chr7_4	exon	21325966	21326511	21325966	ID=Msa1144820-mRNA-1:exon:5125;Parent=Msa1144820-mRNA-1
chr7_4	exon	21327733	21328491	21327733	ID=Msa1144820-mRNA-1:exon:5124;Parent=Msa1144820-mRNA-1
chr7_4	five_prime_UTR	21328396	21328491	21328396	ID=Msa1144820-mRNA-1:five_prime_utr;Parent=Msa1144820-mRNA-1
chr7_4	CDS	21327733	21328395	21327733	ID=Msa1144820-mRNA-1:cds;Parent=Msa1144820-mRNA-1
chr7_4	CDS	21326185	21326511	21326185	ID=Msa1144820-mRNA-1:cds;Parent=Msa1144820-mRNA-1
chr7_4	three_prime_UTR	21325966	21326184	21325966	ID=Msa1144820-mRNA-1:three_prime_utr;Parent=Msa1144820-mRNA-1

Gene Sequence

>Msa1144820

ATGACACTGACACTACCATGTTTCAATGCCCTTATTCTGATCTTGTTCATTCCTTGCTATCTGTCTCTACCTATCCCTATACCTGATGCAGCAACAGTTCAACCACTCACACCAAATCCATCTTCACAAGGAACAATCCCTGCCTTTCCTGAACAAGCTGATGTTGCAAGATGCCCTTTAAGTCTCTCAGATGAACACTTCAATGGAATCAAAAACGCATGCAGTTCCAAATCCAACAAGCATGCTGCTGATGATGATGAACTCCACCGTAGCAGATGTTGCCCTGCTCTAGCTGCGTGGTTATATTCTGCTTACTCTGCCACTGCTCTTGGTGGATTTGAACATGGACACACTACATCCTATGACATGCCTTTGTTACCAGATGATTCAGAAACATGTGAGAGTGATTTGGGAAAGGCTTTGAAAGTTAGAGGGATTGAACTTTTTCAACCTAATGAGACTTGTGATGTGGTTTATTGCTATTGTGGTATTAGGCTTCATCCTTTGAGCTGTTCTGAATCATTTAAACTTAATCATAATGGAAATCTTGTTGGGGATGAAAGTGTGAAGCGATTGGAGAGAAATTGTTTGAGTAGCAGCAATCATGTCAATGGATTTCCTGGTCTTGGAGGTTGCTCTAAGTGCTTGCATAGCCTCTATTCGCTTAGAAAGAAGACTTCAAATTCAAGCAAACTAGGAGATAGAACAACCAAGATCCATAACAAAGATTGTGGACTAATGGGATTAACATGGCTTCTTGCTAAGAATAGGACAGCTTACATTCACACGGTTACTTGGGTTCTTCGTGCTTTGATGTTGAGCCCTGATGGATCTGACCCACAATCATGCACTCTTAATAGTGATGGAATGCCTCTTGCTGTTGATTCTTCTGAAATGTATGATCAATCTTCATCAATCAACCTCAAAGCACCAATCTTTACTTCTTTGTTATTTCTACTACCTATGCATTTCATTCTATTATCCACTTAA

Protein sequence

>Msa1144820

MTLTLPCFNALILILFIPCYLSLPIPIPDAATVQPLTPNPSSQGTIPAFPEQADVARCPLSLSDEHFNGIKNACSSKSNKHAADDDELHRSRCCPALAAWLYSAYSATALGGFEHGHTTSYDMPLLPDDSETCESDLGKALKVRGIELFQPNETCDVVYCYCGIRLHPLSCSESFKLNHNGNLVGDESVKRLERNCLSSSNHVNGFPGLGGCSKCLHSLYSLRKKTSNSSKLGDRTTKIHNKDCGLMGLTWLLAKNRTAYIHTVTWVLRALMLSPDGSDPQSCTLNSDGMPLAVDSSEMYDQSSSINLKAPIFTSLLFLLPMHFILLST*