Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575570 | XP_003631077.1 | 94.925 | 335 | 11 | 4 | 1 | 329 | 1 | 335 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575570 | sp|Q9SUC9|UGPI7_ARATH | 41.328 | 271 | 129 | 6 | 33 | 296 | 26 | 273 | 8.77e-61 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575570 | Q1SN14 | 94.925 | 335 | 11 | 4 | 1 | 329 | 1 | 335 | 0.0 | 633 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0575570 | Msa0711970 | 0.810965 | 8.864716e-51 | -8.615850e-47 |
| Msa0575570 | Msa0749740 | 0.802217 | 6.229418e-49 | -8.615850e-47 |
| Msa0575570 | Msa0749770 | 0.800100 | 1.688553e-48 | -8.615850e-47 |
| Msa0575570 | Msa0750090 | 0.804153 | 2.476598e-49 | -8.615850e-47 |
| Msa0575570 | Msa0794810 | 0.814863 | 1.240245e-51 | -8.615850e-47 |
| Msa0575570 | Msa1055300 | 0.813607 | 2.349256e-51 | -8.615850e-47 |
| Msa0575570 | Msa1144820 | 0.916998 | 9.060781e-86 | -8.615850e-47 |
| Msa0575570 | Msa1165300 | 0.834124 | 3.592602e-56 | -8.615850e-47 |
| Msa0575570 | Msa1369550 | 0.805138 | 1.542827e-49 | -8.615850e-47 |
| Msa0575570 | Msa1464640 | 0.802783 | 4.763040e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575570 | MtrunA17_Chr8g0392751 | 94.925 | 335 | 11 | 4 | 1 | 329 | 1 | 335 | 0.0 | 633 |
| Msa0575570 | MtrunA17_Chr6g0482961 | 64.744 | 312 | 97 | 5 | 1 | 305 | 3 | 308 | 1.69e-133 | 383 |
| Msa0575570 | MtrunA17_Chr4g0022791 | 38.361 | 305 | 151 | 10 | 34 | 322 | 28 | 311 | 2.29e-60 | 196 |
| Msa0575570 | MtrunA17_Chr2g0323391 | 38.284 | 303 | 152 | 8 | 39 | 329 | 19 | 298 | 5.17e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575570 | AT3G18050.1 | 54.896 | 337 | 112 | 10 | 12 | 329 | 11 | 326 | 5.74e-108 | 318 |
| Msa0575570 | AT4G28100.1 | 41.328 | 271 | 129 | 6 | 33 | 296 | 26 | 273 | 8.92e-62 | 199 |
Find 87 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATGAGAGATTCTATTAA+AGG | 0.187880 | 4_1:+79459087 | None:intergenic |
| AGCAGCATGCTTGTTGGATT+TGG | 0.241303 | 4_1:+79461094 | None:intergenic |
| TGTTCATCTGAGAGACTTAA+AGG | 0.251190 | 4_1:+79461146 | None:intergenic |
| GGAAAGGCTTTGAAAGTTAG+AGG | 0.261782 | 4_1:-79460909 | Msa0575570:CDS |
| TAACAAAGATTGTGGACTAA+TGG | 0.300105 | 4_1:-79459559 | Msa0575570:CDS |
| ACAATCTTTGTTATGGATCT+TGG | 0.301361 | 4_1:+79459569 | None:intergenic |
| AATCATGTCAATGGATTTCC+TGG | 0.309349 | 4_1:-79460720 | Msa0575570:CDS |
| AGAAACATGTGAGAGTGATT+TGG | 0.318675 | 4_1:-79460931 | Msa0575570:CDS |
| TCATTTAAACTTAATCATAA+TGG | 0.319467 | 4_1:-79460801 | Msa0575570:CDS |
| CTTACATTCACACGGTTACT+TGG | 0.323135 | 4_1:-79459503 | Msa0575570:CDS |
| GAATGAACAAGATCAGAATA+AGG | 0.333112 | 4_1:+79461291 | None:intergenic |
| GAAACATGTGAGAGTGATTT+GGG | 0.335585 | 4_1:-79460930 | Msa0575570:CDS |
| ATCATAATGGAAATCTTGTT+GGG | 0.350569 | 4_1:-79460788 | Msa0575570:CDS |
| GTCAATGGATTTCCTGGTTT+AGG | 0.352106 | 4_1:-79460714 | Msa0575570:CDS |
| CACTTAACTCAAAACTCAAA+TGG | 0.364950 | 4_1:-79459295 | Msa0575570:exon |
| TTTATTGCTATTGTGGTATT+AGG | 0.367793 | 4_1:-79460848 | Msa0575570:CDS |
| TATTAGTCTATCGCAGAATC+TGG | 0.368092 | 4_1:-79459117 | Msa0575570:three_prime_UTR |
| TTAGTCCACAATCTTTGTTA+TGG | 0.370896 | 4_1:+79459562 | None:intergenic |
| GCTTACTCTGCCACTGCTCT+TGG | 0.375981 | 4_1:-79461011 | Msa0575570:CDS |
| AACAAAGATTGTGGACTAAT+GGG | 0.379439 | 4_1:-79459558 | Msa0575570:CDS |
| TTTAGTTATTAATTGAAATT+GGG | 0.381378 | 4_1:-79459186 | Msa0575570:three_prime_UTR |
| CTTGCAACATCAGCTTGTTC+AGG | 0.386076 | 4_1:+79461173 | None:intergenic |
| AATCATAATGGAAATCTTGT+TGG | 0.388039 | 4_1:-79460789 | Msa0575570:CDS |
| GGGATTGTTCCTTGTGAAGA+TGG | 0.393542 | 4_1:+79461203 | None:intergenic |
| ACTGTTGCTGCATCAGGTAT+AGG | 0.404077 | 4_1:+79461245 | None:intergenic |
| GTTCCTTGTGAAGATGGATT+TGG | 0.404459 | 4_1:+79461209 | None:intergenic |
| GATTGATTGATCTCCTATCT+TGG | 0.412011 | 4_1:-79459263 | Msa0575570:three_prime_UTR |
| CTGTTGCTGCATCAGGTATA+GGG | 0.413282 | 4_1:+79461246 | None:intergenic |
| AAATATACAAATGCCAAGAT+AGG | 0.414288 | 4_1:+79459250 | None:intergenic |
| AAGTAAAGATTGGTGCTTTG+AGG | 0.419197 | 4_1:+79459358 | None:intergenic |
| CATGGCTTCTTGCTAAGAAT+AGG | 0.421289 | 4_1:-79459530 | Msa0575570:CDS |
| GTATATTTGAATATTAGCTT+TGG | 0.421378 | 4_1:-79459235 | Msa0575570:three_prime_UTR |
| ATCATCAGCAGCATGCTTGT+TGG | 0.425684 | 4_1:+79461088 | None:intergenic |
| GTGCTTGCATAGCCTCTATT+CGG | 0.434330 | 4_1:-79460679 | Msa0575570:intron |
| AGTAGCAGCAATCATGTCAA+TGG | 0.437121 | 4_1:-79460729 | Msa0575570:CDS |
| TACTCTGCCACTGCTCTTGG+TGG | 0.440680 | 4_1:-79461008 | Msa0575570:CDS |
| GGTTGAACTGTTGCTGCATC+AGG | 0.446546 | 4_1:+79461239 | None:intergenic |
| ACTACATCACAAGTCTCATT+AGG | 0.447869 | 4_1:+79460870 | None:intergenic |
| ACTTAACTCAAAACTCAAAT+GGG | 0.453388 | 4_1:-79459294 | Msa0575570:exon |
| AGCTTTGGTGCCTAGCTACT+AGG | 0.463643 | 4_1:-79459220 | Msa0575570:three_prime_UTR |
| CTCTCAGATGAACACTTCAA+TGG | 0.470119 | 4_1:-79461137 | Msa0575570:CDS |
| TGGTAACAAAGGCATGTCAT+AGG | 0.475683 | 4_1:+79460962 | None:intergenic |
| AATAACAAAGAAGTAAAGAT+TGG | 0.476661 | 4_1:+79459348 | None:intergenic |
| GATTGTGGGTCAGATCCATC+AGG | 0.479917 | 4_1:+79459456 | None:intergenic |
| AATGAACAAGATCAGAATAA+GGG | 0.485195 | 4_1:+79461292 | None:intergenic |
| TCACATGTTTCTGAATCATC+TGG | 0.486932 | 4_1:+79460942 | None:intergenic |
| ACTTCAAATTCAAGCAAACT+AGG | 0.488204 | 4_1:-79459603 | Msa0575570:CDS |
| TATAACCACGCAGCTAGAGC+AGG | 0.490667 | 4_1:+79461038 | None:intergenic |
| AATGGATTTCCTGGTTTAGG+AGG | 0.499338 | 4_1:-79460711 | Msa0575570:CDS |
| TCAGCTTGTTCAGGAAAGGC+AGG | 0.508237 | 4_1:+79461182 | None:intergenic |
| GATGTAGTTTATTGCTATTG+TGG | 0.512189 | 4_1:-79460855 | Msa0575570:CDS |
| GGATGAAAGTGTGAAGAGAC+TGG | 0.526228 | 4_1:-79460766 | Msa0575570:CDS |
| TATTAAGAGTGCATGATTGT+GGG | 0.526493 | 4_1:+79459442 | None:intergenic |
| ACATAAAACTAACCGAATAG+AGG | 0.527430 | 4_1:+79460667 | None:intergenic |
| GTTCATCTGAGAGACTTAAA+GGG | 0.530502 | 4_1:+79461147 | None:intergenic |
| GCTTTGATGTTGAGCCCTGA+TGG | 0.531610 | 4_1:-79459471 | Msa0575570:CDS |
| TTACATTCACACGGTTACTT+GGG | 0.542923 | 4_1:-79459502 | Msa0575570:CDS |
| CAGGGCAACATCTGCTACGG+TGG | 0.543905 | 4_1:+79461057 | None:intergenic |
| TCATGCACTCTTAATAGTGA+TGG | 0.547682 | 4_1:-79459435 | Msa0575570:CDS |
| CTATTAAGAGTGCATGATTG+TGG | 0.554864 | 4_1:+79459441 | None:intergenic |
| AACATCAGCTTGTTCAGGAA+AGG | 0.557995 | 4_1:+79461178 | None:intergenic |
| GAAAGGCTTTGAAAGTTAGA+GGG | 0.558239 | 4_1:-79460908 | Msa0575570:CDS |
| AAGATCCATAACAAAGATTG+TGG | 0.561040 | 4_1:-79459567 | Msa0575570:CDS |
| AAATTACACTCCTAGTAGCT+AGG | 0.563739 | 4_1:+79459210 | None:intergenic |
| ATAGAGGCTATGCAAGCACT+TGG | 0.564464 | 4_1:+79460683 | None:intergenic |
| TCAGAAGAATCAACAGCAAG+AGG | 0.565150 | 4_1:+79459408 | None:intergenic |
| GCTCTTGGTGGATTTGAACA+TGG | 0.566075 | 4_1:-79460996 | Msa0575570:CDS |
| GAAGATGGATTTGGTGTGAG+TGG | 0.572672 | 4_1:+79461218 | None:intergenic |
| ATGTGAGAGTGATTTGGGAA+AGG | 0.572811 | 4_1:-79460925 | Msa0575570:CDS |
| GCTGCATCAGGTATAGGGAT+AGG | 0.583191 | 4_1:+79461251 | None:intergenic |
| ATAGGTAGAGACAGATAGCA+AGG | 0.586691 | 4_1:+79461269 | None:intergenic |
| TCTGAATCATCTGGTAACAA+AGG | 0.590518 | 4_1:+79460951 | None:intergenic |
| GAGCAGGGCAACATCTGCTA+CGG | 0.598551 | 4_1:+79461054 | None:intergenic |
| CAGCTTGTTCAGGAAAGGCA+GGG | 0.600385 | 4_1:+79461183 | None:intergenic |
| AATGATTCAGAACAGCTCAA+AGG | 0.601998 | 4_1:+79460819 | None:intergenic |
| TTCAAATCCACCAAGAGCAG+TGG | 0.614427 | 4_1:+79461001 | None:intergenic |
| AAGAAGAAGAGATATGGGTG+TGG | 0.621729 | 4_1:+79461413 | None:intergenic |
| TCATAATGGAAATCTTGTTG+GGG | 0.624389 | 4_1:-79460787 | Msa0575570:CDS |
| AGTGAATGTGAATGTGAATG+TGG | 0.630610 | 4_1:+79461374 | None:intergenic |
| ATAACCACGCAGCTAGAGCA+GGG | 0.647079 | 4_1:+79461039 | None:intergenic |
| GTGGACTAATGGGATTAACA+TGG | 0.649737 | 4_1:-79459548 | Msa0575570:CDS |
| TTGGAGCAACCTCCTAAACC+AGG | 0.662285 | 4_1:+79460702 | None:intergenic |
| AGAATAAGGGTATTGAAACA+TGG | 0.662731 | 4_1:+79461305 | None:intergenic |
| ATTGTGGGTCAGATCCATCA+GGG | 0.665448 | 4_1:+79459457 | None:intergenic |
| TAGGACAGCTTACATTCACA+CGG | 0.684791 | 4_1:-79459511 | Msa0575570:CDS |
| ACACCAAATCCATCTTCACA+AGG | 0.698474 | 4_1:-79461212 | Msa0575570:CDS |
| GTTGCCCTGCTCTAGCTGCG+TGG | 0.703286 | 4_1:-79461043 | Msa0575570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAGAGAAAAAAATTTA+GGG | + | chr4_1:79460017-79460036 | None:intergenic | 10.0% |
| !!! | TTTTAGTTATTAATTGAAAT+TGG | - | chr4_1:79461332-79461351 | Msa0575570:exon | 10.0% |
| !! | TTTAGTTATTAATTGAAATT+GGG | - | chr4_1:79461333-79461352 | Msa0575570:exon | 10.0% |
| !! | AAAATAGAGAAAAAAATTTA+GGG | + | chr4_1:79460017-79460036 | None:intergenic | 10.0% |
| !!! | TTTTAGTTATTAATTGAAAT+TGG | - | chr4_1:79461332-79461351 | Msa0575570:exon | 10.0% |
| !! | TTTAGTTATTAATTGAAATT+GGG | - | chr4_1:79461333-79461352 | Msa0575570:exon | 10.0% |
| !! | TCATTTAAACTTAATCATAA+TGG | - | chr4_1:79459718-79459737 | Msa0575570:intron | 15.0% |
| !! | AAATAGAGAAAAAAATTTAG+GGG | + | chr4_1:79460016-79460035 | None:intergenic | 15.0% |
| !! | CAAAATAGAGAAAAAAATTT+AGG | + | chr4_1:79460018-79460037 | None:intergenic | 15.0% |
| !!! | AGACATCATAATAAATTTTA+AGG | - | chr4_1:79460153-79460172 | Msa0575570:intron | 15.0% |
| !! | TCATTTAAACTTAATCATAA+TGG | - | chr4_1:79459718-79459737 | Msa0575570:intron | 15.0% |
| !! | AAATAGAGAAAAAAATTTAG+GGG | + | chr4_1:79460016-79460035 | None:intergenic | 15.0% |
| !! | CAAAATAGAGAAAAAAATTT+AGG | + | chr4_1:79460018-79460037 | None:intergenic | 15.0% |
| !!! | AGACATCATAATAAATTTTA+AGG | - | chr4_1:79460153-79460172 | Msa0575570:intron | 15.0% |
| !!! | CATCATAATAAATTTTAAGG+TGG | - | chr4_1:79460156-79460175 | Msa0575570:intron | 20.0% |
| !!! | TTTAAAGCCAAATAATTAGT+AGG | - | chr4_1:79460699-79460718 | Msa0575570:CDS | 20.0% |
| !! | ATTTCAACCTACTAATTATT+TGG | + | chr4_1:79460709-79460728 | None:intergenic | 20.0% |
| !!! | TTTGACTATTTTTCAATGAA+TGG | - | chr4_1:79460781-79460800 | Msa0575570:CDS | 20.0% |
| !! | TTTGGCATAATAAATATGTT+TGG | + | chr4_1:79460815-79460834 | None:intergenic | 20.0% |
| !! | AATAACAAAGAAGTAAAGAT+TGG | + | chr4_1:79461174-79461193 | None:intergenic | 20.0% |
| !!! | GTATATTTGAATATTAGCTT+TGG | - | chr4_1:79461284-79461303 | Msa0575570:CDS | 20.0% |
| !!! | CATCATAATAAATTTTAAGG+TGG | - | chr4_1:79460156-79460175 | Msa0575570:intron | 20.0% |
| !!! | TTTAAAGCCAAATAATTAGT+AGG | - | chr4_1:79460699-79460718 | Msa0575570:CDS | 20.0% |
| !! | ATTTCAACCTACTAATTATT+TGG | + | chr4_1:79460709-79460728 | None:intergenic | 20.0% |
| !!! | TTTGACTATTTTTCAATGAA+TGG | - | chr4_1:79460781-79460800 | Msa0575570:CDS | 20.0% |
| !! | TTTGGCATAATAAATATGTT+TGG | + | chr4_1:79460815-79460834 | None:intergenic | 20.0% |
| !! | AATAACAAAGAAGTAAAGAT+TGG | + | chr4_1:79461174-79461193 | None:intergenic | 20.0% |
| !!! | GTATATTTGAATATTAGCTT+TGG | - | chr4_1:79461284-79461303 | Msa0575570:CDS | 20.0% |
| ! | GAAAAAAGAAGAAGAGATAT+GGG | + | chr4_1:79459114-79459133 | None:intergenic | 25.0% |
| ! | TGAAAAAAGAAGAAGAGATA+TGG | + | chr4_1:79459115-79459134 | None:intergenic | 25.0% |
| ! | AATGAACAAGATCAGAATAA+GGG | + | chr4_1:79459230-79459249 | None:intergenic | 25.0% |
| !! | TTTATTGCTATTGTGGTATT+AGG | - | chr4_1:79459671-79459690 | Msa0575570:intron | 25.0% |
| !! | AATCATAATGGAAATCTTGT+TGG | - | chr4_1:79459730-79459749 | Msa0575570:intron | 25.0% |
| !! | ATCATAATGGAAATCTTGTT+GGG | - | chr4_1:79459731-79459750 | Msa0575570:intron | 25.0% |
| !!! | TCGGTTAGTTTTATGTTAAA+TGG | - | chr4_1:79459859-79459878 | Msa0575570:intron | 25.0% |
| !!! | CGGTTAGTTTTATGTTAAAT+GGG | - | chr4_1:79459860-79459879 | Msa0575570:intron | 25.0% |
| ! | ATGATGTAAGTACATAAGAA+TGG | + | chr4_1:79459900-79459919 | None:intergenic | 25.0% |
| !! | CTTTTAACCTTTCTTTACTT+TGG | - | chr4_1:79459942-79459961 | Msa0575570:intron | 25.0% |
| ! | ATTTGCATCACAAAATTAGA+TGG | - | chr4_1:79460055-79460074 | Msa0575570:intron | 25.0% |
| ! | GATTTAATAGCAGAACATTA+TGG | + | chr4_1:79460638-79460657 | None:intergenic | 25.0% |
| ! | TGTTGTCTTAGAAAATAGAT+GGG | + | chr4_1:79460676-79460695 | None:intergenic | 25.0% |
| ! | ATGTTGTCTTAGAAAATAGA+TGG | + | chr4_1:79460677-79460696 | None:intergenic | 25.0% |
| ! | ACAATAAAAGAAGGCAATAT+AGG | + | chr4_1:79460740-79460759 | None:intergenic | 25.0% |
| ! | AGAACACTTACAATAAAAGA+AGG | + | chr4_1:79460749-79460768 | None:intergenic | 25.0% |
| ! | TTTATTGTAAGTGTTCTTGA+TGG | - | chr4_1:79460752-79460771 | Msa0575570:CDS | 25.0% |
| ! | ACTTAACTCAAAACTCAAAT+GGG | - | chr4_1:79461225-79461244 | Msa0575570:CDS | 25.0% |
| ! | AAATATACAAATGCCAAGAT+AGG | + | chr4_1:79461272-79461291 | None:intergenic | 25.0% |
| ! | TTGATCACCTTTAATAGAAT+AGG | - | chr4_1:79461425-79461444 | Msa0575570:five_prime_UTR | 25.0% |
| ! | GAAAAAAGAAGAAGAGATAT+GGG | + | chr4_1:79459114-79459133 | None:intergenic | 25.0% |
| ! | TGAAAAAAGAAGAAGAGATA+TGG | + | chr4_1:79459115-79459134 | None:intergenic | 25.0% |
| ! | AATGAACAAGATCAGAATAA+GGG | + | chr4_1:79459230-79459249 | None:intergenic | 25.0% |
| !! | TTTATTGCTATTGTGGTATT+AGG | - | chr4_1:79459671-79459690 | Msa0575570:intron | 25.0% |
| !! | AATCATAATGGAAATCTTGT+TGG | - | chr4_1:79459730-79459749 | Msa0575570:intron | 25.0% |
| !! | ATCATAATGGAAATCTTGTT+GGG | - | chr4_1:79459731-79459750 | Msa0575570:intron | 25.0% |
| !!! | TCGGTTAGTTTTATGTTAAA+TGG | - | chr4_1:79459859-79459878 | Msa0575570:intron | 25.0% |
| !!! | CGGTTAGTTTTATGTTAAAT+GGG | - | chr4_1:79459860-79459879 | Msa0575570:intron | 25.0% |
| ! | ATGATGTAAGTACATAAGAA+TGG | + | chr4_1:79459900-79459919 | None:intergenic | 25.0% |
| !! | CTTTTAACCTTTCTTTACTT+TGG | - | chr4_1:79459942-79459961 | Msa0575570:intron | 25.0% |
| ! | ATTTGCATCACAAAATTAGA+TGG | - | chr4_1:79460055-79460074 | Msa0575570:intron | 25.0% |
| ! | GATTTAATAGCAGAACATTA+TGG | + | chr4_1:79460638-79460657 | None:intergenic | 25.0% |
| ! | TGTTGTCTTAGAAAATAGAT+GGG | + | chr4_1:79460676-79460695 | None:intergenic | 25.0% |
| ! | ATGTTGTCTTAGAAAATAGA+TGG | + | chr4_1:79460677-79460696 | None:intergenic | 25.0% |
| ! | ACAATAAAAGAAGGCAATAT+AGG | + | chr4_1:79460740-79460759 | None:intergenic | 25.0% |
| ! | AGAACACTTACAATAAAAGA+AGG | + | chr4_1:79460749-79460768 | None:intergenic | 25.0% |
| ! | TTTATTGTAAGTGTTCTTGA+TGG | - | chr4_1:79460752-79460771 | Msa0575570:CDS | 25.0% |
| ! | ACTTAACTCAAAACTCAAAT+GGG | - | chr4_1:79461225-79461244 | Msa0575570:CDS | 25.0% |
| ! | AAATATACAAATGCCAAGAT+AGG | + | chr4_1:79461272-79461291 | None:intergenic | 25.0% |
| !! | AGAATAAGGGTATTGAAACA+TGG | + | chr4_1:79459217-79459236 | None:intergenic | 30.0% |
| GAATGAACAAGATCAGAATA+AGG | + | chr4_1:79459231-79459250 | None:intergenic | 30.0% | |
| ! | GATGTAGTTTATTGCTATTG+TGG | - | chr4_1:79459664-79459683 | Msa0575570:intron | 30.0% |
| ! | TCATAATGGAAATCTTGTTG+GGG | - | chr4_1:79459732-79459751 | Msa0575570:intron | 30.0% |
| ACATAAAACTAACCGAATAG+AGG | + | chr4_1:79459855-79459874 | None:intergenic | 30.0% | |
| TTATGTACTTACATCATGCT+TGG | - | chr4_1:79459903-79459922 | Msa0575570:intron | 30.0% | |
| ! | TTACATCATGCTTGGTAATT+GGG | - | chr4_1:79459911-79459930 | Msa0575570:intron | 30.0% |
| TTAACCTTTCTTTACTTTGG+AGG | - | chr4_1:79459945-79459964 | Msa0575570:intron | 30.0% | |
| TAACCTTTCTTTACTTTGGA+GGG | - | chr4_1:79459946-79459965 | Msa0575570:intron | 30.0% | |
| ACTACAAGTACAAACACAAA+TGG | + | chr4_1:79459987-79460006 | None:intergenic | 30.0% | |
| TAGAGAAAAAAATTTAGGGG+AGG | + | chr4_1:79460013-79460032 | None:intergenic | 30.0% | |
| AGTAGGAAATGTGAATTAGA+GGG | + | chr4_1:79460371-79460390 | None:intergenic | 30.0% | |
| AAGTAGGAAATGTGAATTAG+AGG | + | chr4_1:79460372-79460391 | None:intergenic | 30.0% | |
| TTCCTACTTAACTCAGTTAT+TGG | - | chr4_1:79460383-79460402 | Msa0575570:intron | 30.0% | |
| TTCCAATAACTGAGTTAAGT+AGG | + | chr4_1:79460388-79460407 | None:intergenic | 30.0% | |
| AAGAACGATAAATCCAAATG+TGG | + | chr4_1:79460431-79460450 | None:intergenic | 30.0% | |
| TTAGAAAATAGATGGGAATC+GGG | + | chr4_1:79460669-79460688 | None:intergenic | 30.0% | |
| CTTAGAAAATAGATGGGAAT+CGG | + | chr4_1:79460670-79460689 | None:intergenic | 30.0% | |
| ACTTCAAATTCAAGCAAACT+AGG | - | chr4_1:79460916-79460935 | Msa0575570:CDS | 30.0% | |
| ! | ACAATCTTTGTTATGGATCT+TGG | + | chr4_1:79460953-79460972 | None:intergenic | 30.0% |
| AAGATCCATAACAAAGATTG+TGG | - | chr4_1:79460952-79460971 | Msa0575570:CDS | 30.0% | |
| TTAGTCCACAATCTTTGTTA+TGG | + | chr4_1:79460960-79460979 | None:intergenic | 30.0% | |
| ! | TAACAAAGATTGTGGACTAA+TGG | - | chr4_1:79460960-79460979 | Msa0575570:CDS | 30.0% |
| ! | AACAAAGATTGTGGACTAAT+GGG | - | chr4_1:79460961-79460980 | Msa0575570:CDS | 30.0% |
| ! | TATTAAGAGTGCATGATTGT+GGG | + | chr4_1:79461080-79461099 | None:intergenic | 30.0% |
| !!! | CATTTGAGTTTTGAGTTAAG+TGG | + | chr4_1:79461226-79461245 | None:intergenic | 30.0% |
| CACTTAACTCAAAACTCAAA+TGG | - | chr4_1:79461224-79461243 | Msa0575570:CDS | 30.0% | |
| !! | AGAATAAGGGTATTGAAACA+TGG | + | chr4_1:79459217-79459236 | None:intergenic | 30.0% |
| GAATGAACAAGATCAGAATA+AGG | + | chr4_1:79459231-79459250 | None:intergenic | 30.0% | |
| ! | GATGTAGTTTATTGCTATTG+TGG | - | chr4_1:79459664-79459683 | Msa0575570:intron | 30.0% |
| ! | TCATAATGGAAATCTTGTTG+GGG | - | chr4_1:79459732-79459751 | Msa0575570:intron | 30.0% |
| ACATAAAACTAACCGAATAG+AGG | + | chr4_1:79459855-79459874 | None:intergenic | 30.0% | |
| TTATGTACTTACATCATGCT+TGG | - | chr4_1:79459903-79459922 | Msa0575570:intron | 30.0% | |
| ! | TTACATCATGCTTGGTAATT+GGG | - | chr4_1:79459911-79459930 | Msa0575570:intron | 30.0% |
| TTAACCTTTCTTTACTTTGG+AGG | - | chr4_1:79459945-79459964 | Msa0575570:intron | 30.0% | |
| TAACCTTTCTTTACTTTGGA+GGG | - | chr4_1:79459946-79459965 | Msa0575570:intron | 30.0% | |
| ACTACAAGTACAAACACAAA+TGG | + | chr4_1:79459987-79460006 | None:intergenic | 30.0% | |
| TAGAGAAAAAAATTTAGGGG+AGG | + | chr4_1:79460013-79460032 | None:intergenic | 30.0% | |
| AGTAGGAAATGTGAATTAGA+GGG | + | chr4_1:79460371-79460390 | None:intergenic | 30.0% | |
| AAGTAGGAAATGTGAATTAG+AGG | + | chr4_1:79460372-79460391 | None:intergenic | 30.0% | |
| TTCCTACTTAACTCAGTTAT+TGG | - | chr4_1:79460383-79460402 | Msa0575570:intron | 30.0% | |
| TTCCAATAACTGAGTTAAGT+AGG | + | chr4_1:79460388-79460407 | None:intergenic | 30.0% | |
| AAGAACGATAAATCCAAATG+TGG | + | chr4_1:79460431-79460450 | None:intergenic | 30.0% | |
| TTAGAAAATAGATGGGAATC+GGG | + | chr4_1:79460669-79460688 | None:intergenic | 30.0% | |
| CTTAGAAAATAGATGGGAAT+CGG | + | chr4_1:79460670-79460689 | None:intergenic | 30.0% | |
| ACTTCAAATTCAAGCAAACT+AGG | - | chr4_1:79460916-79460935 | Msa0575570:CDS | 30.0% | |
| ! | ACAATCTTTGTTATGGATCT+TGG | + | chr4_1:79460953-79460972 | None:intergenic | 30.0% |
| AAGATCCATAACAAAGATTG+TGG | - | chr4_1:79460952-79460971 | Msa0575570:CDS | 30.0% | |
| TTAGTCCACAATCTTTGTTA+TGG | + | chr4_1:79460960-79460979 | None:intergenic | 30.0% | |
| ! | TAACAAAGATTGTGGACTAA+TGG | - | chr4_1:79460960-79460979 | Msa0575570:CDS | 30.0% |
| ! | AACAAAGATTGTGGACTAAT+GGG | - | chr4_1:79460961-79460980 | Msa0575570:CDS | 30.0% |
| ! | TATTAAGAGTGCATGATTGT+GGG | + | chr4_1:79461080-79461099 | None:intergenic | 30.0% |
| !!! | CATTTGAGTTTTGAGTTAAG+TGG | + | chr4_1:79461226-79461245 | None:intergenic | 30.0% |
| CACTTAACTCAAAACTCAAA+TGG | - | chr4_1:79461224-79461243 | Msa0575570:CDS | 30.0% | |
| AGTGAATGTGAATGTGAATG+TGG | + | chr4_1:79459148-79459167 | None:intergenic | 35.0% | |
| GTTCATCTGAGAGACTTAAA+GGG | + | chr4_1:79459375-79459394 | None:intergenic | 35.0% | |
| TGTTCATCTGAGAGACTTAA+AGG | + | chr4_1:79459376-79459395 | None:intergenic | 35.0% | |
| TCTGAATCATCTGGTAACAA+AGG | + | chr4_1:79459571-79459590 | None:intergenic | 35.0% | |
| ! | TCACATGTTTCTGAATCATC+TGG | + | chr4_1:79459580-79459599 | None:intergenic | 35.0% |
| AGAAACATGTGAGAGTGATT+TGG | - | chr4_1:79459588-79459607 | Msa0575570:CDS | 35.0% | |
| GAAACATGTGAGAGTGATTT+GGG | - | chr4_1:79459589-79459608 | Msa0575570:CDS | 35.0% | |
| !! | GAAAGGCTTTGAAAGTTAGA+GGG | - | chr4_1:79459611-79459630 | Msa0575570:CDS | 35.0% |
| ACTACATCACAAGTCTCATT+AGG | + | chr4_1:79459652-79459671 | None:intergenic | 35.0% | |
| AATGATTCAGAACAGCTCAA+AGG | + | chr4_1:79459703-79459722 | None:intergenic | 35.0% | |
| ! | AATCATGTCAATGGATTTCC+TGG | - | chr4_1:79459799-79459818 | Msa0575570:intron | 35.0% |
| ! | CTTACATCATGCTTGGTAAT+TGG | - | chr4_1:79459910-79459929 | Msa0575570:intron | 35.0% |
| ! | TACATCATGCTTGGTAATTG+GGG | - | chr4_1:79459912-79459931 | Msa0575570:intron | 35.0% |
| TATCCCTCCAAAGTAAAGAA+AGG | + | chr4_1:79459952-79459971 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCACATGGGAATT+GGG | + | chr4_1:79460093-79460112 | None:intergenic | 35.0% |
| ! | AAGGTGGCTCTGTATATATT+TGG | - | chr4_1:79460172-79460191 | Msa0575570:intron | 35.0% |
| CCGTAATTTCGACAAAATCA+CGG | + | chr4_1:79460203-79460222 | None:intergenic | 35.0% | |
| ! | CCGTGATTTTGTCGAAATTA+CGG | - | chr4_1:79460200-79460219 | Msa0575570:intron | 35.0% |
| ! | AACTTTTGTCGAAATCAAGG+TGG | + | chr4_1:79460230-79460249 | None:intergenic | 35.0% |
| ! | GCTAACTTTTGTCGAAATCA+AGG | + | chr4_1:79460233-79460252 | None:intergenic | 35.0% |
| ATTAGTGATTGTGGCATGTT+TGG | + | chr4_1:79460299-79460318 | None:intergenic | 35.0% | |
| CAAACCATCATTAGTGATTG+TGG | + | chr4_1:79460308-79460327 | None:intergenic | 35.0% | |
| CACAATCACTAATGATGGTT+TGG | - | chr4_1:79460306-79460325 | Msa0575570:intron | 35.0% | |
| GTAGGAAATGTGAATTAGAG+GGG | + | chr4_1:79460370-79460389 | None:intergenic | 35.0% | |
| ! | ACAGAAACAGCACTTACTTT+TGG | + | chr4_1:79460833-79460852 | None:intergenic | 35.0% |
| TTACATTCACACGGTTACTT+GGG | - | chr4_1:79461017-79461036 | Msa0575570:CDS | 35.0% | |
| ! | CTATTAAGAGTGCATGATTG+TGG | + | chr4_1:79461081-79461100 | None:intergenic | 35.0% |
| TCATGCACTCTTAATAGTGA+TGG | - | chr4_1:79461084-79461103 | Msa0575570:CDS | 35.0% | |
| ! | AAGTAAAGATTGGTGCTTTG+AGG | + | chr4_1:79461164-79461183 | None:intergenic | 35.0% |
| GATTGATTGATCTCCTATCT+TGG | - | chr4_1:79461256-79461275 | Msa0575570:CDS | 35.0% | |
| AAATTACACTCCTAGTAGCT+AGG | + | chr4_1:79461312-79461331 | None:intergenic | 35.0% | |
| ! | TATTAGTCTATCGCAGAATC+TGG | - | chr4_1:79461402-79461421 | Msa0575570:five_prime_UTR | 35.0% |
| AGTGAATGTGAATGTGAATG+TGG | + | chr4_1:79459148-79459167 | None:intergenic | 35.0% | |
| GTTCATCTGAGAGACTTAAA+GGG | + | chr4_1:79459375-79459394 | None:intergenic | 35.0% | |
| TGTTCATCTGAGAGACTTAA+AGG | + | chr4_1:79459376-79459395 | None:intergenic | 35.0% | |
| TCTGAATCATCTGGTAACAA+AGG | + | chr4_1:79459571-79459590 | None:intergenic | 35.0% | |
| ! | TCACATGTTTCTGAATCATC+TGG | + | chr4_1:79459580-79459599 | None:intergenic | 35.0% |
| AGAAACATGTGAGAGTGATT+TGG | - | chr4_1:79459588-79459607 | Msa0575570:CDS | 35.0% | |
| GAAACATGTGAGAGTGATTT+GGG | - | chr4_1:79459589-79459608 | Msa0575570:CDS | 35.0% | |
| !! | GAAAGGCTTTGAAAGTTAGA+GGG | - | chr4_1:79459611-79459630 | Msa0575570:CDS | 35.0% |
| ACTACATCACAAGTCTCATT+AGG | + | chr4_1:79459652-79459671 | None:intergenic | 35.0% | |
| AATGATTCAGAACAGCTCAA+AGG | + | chr4_1:79459703-79459722 | None:intergenic | 35.0% | |
| ! | AATCATGTCAATGGATTTCC+TGG | - | chr4_1:79459799-79459818 | Msa0575570:intron | 35.0% |
| ! | CTTACATCATGCTTGGTAAT+TGG | - | chr4_1:79459910-79459929 | Msa0575570:intron | 35.0% |
| ! | TACATCATGCTTGGTAATTG+GGG | - | chr4_1:79459912-79459931 | Msa0575570:intron | 35.0% |
| TATCCCTCCAAAGTAAAGAA+AGG | + | chr4_1:79459952-79459971 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCACATGGGAATT+GGG | + | chr4_1:79460093-79460112 | None:intergenic | 35.0% |
| ! | AAGGTGGCTCTGTATATATT+TGG | - | chr4_1:79460172-79460191 | Msa0575570:intron | 35.0% |
| CCGTAATTTCGACAAAATCA+CGG | + | chr4_1:79460203-79460222 | None:intergenic | 35.0% | |
| ! | CCGTGATTTTGTCGAAATTA+CGG | - | chr4_1:79460200-79460219 | Msa0575570:intron | 35.0% |
| ! | AACTTTTGTCGAAATCAAGG+TGG | + | chr4_1:79460230-79460249 | None:intergenic | 35.0% |
| ! | GCTAACTTTTGTCGAAATCA+AGG | + | chr4_1:79460233-79460252 | None:intergenic | 35.0% |
| ATTAGTGATTGTGGCATGTT+TGG | + | chr4_1:79460299-79460318 | None:intergenic | 35.0% | |
| CAAACCATCATTAGTGATTG+TGG | + | chr4_1:79460308-79460327 | None:intergenic | 35.0% | |
| CACAATCACTAATGATGGTT+TGG | - | chr4_1:79460306-79460325 | Msa0575570:intron | 35.0% | |
| GTAGGAAATGTGAATTAGAG+GGG | + | chr4_1:79460370-79460389 | None:intergenic | 35.0% | |
| ! | ACAGAAACAGCACTTACTTT+TGG | + | chr4_1:79460833-79460852 | None:intergenic | 35.0% |
| TTACATTCACACGGTTACTT+GGG | - | chr4_1:79461017-79461036 | Msa0575570:CDS | 35.0% | |
| ! | CTATTAAGAGTGCATGATTG+TGG | + | chr4_1:79461081-79461100 | None:intergenic | 35.0% |
| TCATGCACTCTTAATAGTGA+TGG | - | chr4_1:79461084-79461103 | Msa0575570:CDS | 35.0% | |
| ! | AAGTAAAGATTGGTGCTTTG+AGG | + | chr4_1:79461164-79461183 | None:intergenic | 35.0% |
| GATTGATTGATCTCCTATCT+TGG | - | chr4_1:79461256-79461275 | Msa0575570:CDS | 35.0% | |
| AAATTACACTCCTAGTAGCT+AGG | + | chr4_1:79461312-79461331 | None:intergenic | 35.0% | |
| ! | TATTAGTCTATCGCAGAATC+TGG | - | chr4_1:79461402-79461421 | Msa0575570:five_prime_UTR | 35.0% |
| AAGAAGAAGAGATATGGGTG+TGG | + | chr4_1:79459109-79459128 | None:intergenic | 40.0% | |
| ATAGGTAGAGACAGATAGCA+AGG | + | chr4_1:79459253-79459272 | None:intergenic | 40.0% | |
| ACACCAAATCCATCTTCACA+AGG | - | chr4_1:79459307-79459326 | Msa0575570:exon | 40.0% | |
| ! | GTTCCTTGTGAAGATGGATT+TGG | + | chr4_1:79459313-79459332 | None:intergenic | 40.0% |
| ! | AACATCAGCTTGTTCAGGAA+AGG | + | chr4_1:79459344-79459363 | None:intergenic | 40.0% |
| CTCTCAGATGAACACTTCAA+TGG | - | chr4_1:79459382-79459401 | Msa0575570:CDS | 40.0% | |
| ! | TGGTAACAAAGGCATGTCAT+AGG | + | chr4_1:79459560-79459579 | None:intergenic | 40.0% |
| ! | ATGTGAGAGTGATTTGGGAA+AGG | - | chr4_1:79459594-79459613 | Msa0575570:CDS | 40.0% |
| !! | GGAAAGGCTTTGAAAGTTAG+AGG | - | chr4_1:79459610-79459629 | Msa0575570:CDS | 40.0% |
| AGTAGCAGCAATCATGTCAA+TGG | - | chr4_1:79459790-79459809 | Msa0575570:intron | 40.0% | |
| ! | GTCAATGGATTTCCTGGTTT+AGG | - | chr4_1:79459805-79459824 | Msa0575570:intron | 40.0% |
| ! | AATGGATTTCCTGGTTTAGG+AGG | - | chr4_1:79459808-79459827 | Msa0575570:intron | 40.0% |
| ! | ACATCATGCTTGGTAATTGG+GGG | - | chr4_1:79459913-79459932 | Msa0575570:intron | 40.0% |
| !!! | CTTGTTTTGCACATGGGAAT+TGG | + | chr4_1:79460094-79460113 | None:intergenic | 40.0% |
| !!! | CAACAGCTTGTTTTGCACAT+GGG | + | chr4_1:79460100-79460119 | None:intergenic | 40.0% |
| CATGCCACAATCACTAATGA+TGG | - | chr4_1:79460301-79460320 | Msa0575570:intron | 40.0% | |
| ACAACATCTGTAGCCACATT+TGG | - | chr4_1:79460415-79460434 | Msa0575570:intron | 40.0% | |
| ! | GTGGACTAATGGGATTAACA+TGG | - | chr4_1:79460971-79460990 | Msa0575570:CDS | 40.0% |
| CATGGCTTCTTGCTAAGAAT+AGG | - | chr4_1:79460989-79461008 | Msa0575570:CDS | 40.0% | |
| TAGGACAGCTTACATTCACA+CGG | - | chr4_1:79461008-79461027 | Msa0575570:CDS | 40.0% | |
| CTTACATTCACACGGTTACT+TGG | - | chr4_1:79461016-79461035 | Msa0575570:CDS | 40.0% | |
| TCAGAAGAATCAACAGCAAG+AGG | + | chr4_1:79461114-79461133 | None:intergenic | 40.0% | |
| AAGAAGAAGAGATATGGGTG+TGG | + | chr4_1:79459109-79459128 | None:intergenic | 40.0% | |
| ATAGGTAGAGACAGATAGCA+AGG | + | chr4_1:79459253-79459272 | None:intergenic | 40.0% | |
| ACACCAAATCCATCTTCACA+AGG | - | chr4_1:79459307-79459326 | Msa0575570:exon | 40.0% | |
| ! | GTTCCTTGTGAAGATGGATT+TGG | + | chr4_1:79459313-79459332 | None:intergenic | 40.0% |
| ! | AACATCAGCTTGTTCAGGAA+AGG | + | chr4_1:79459344-79459363 | None:intergenic | 40.0% |
| CTCTCAGATGAACACTTCAA+TGG | - | chr4_1:79459382-79459401 | Msa0575570:CDS | 40.0% | |
| ! | TGGTAACAAAGGCATGTCAT+AGG | + | chr4_1:79459560-79459579 | None:intergenic | 40.0% |
| ! | ATGTGAGAGTGATTTGGGAA+AGG | - | chr4_1:79459594-79459613 | Msa0575570:CDS | 40.0% |
| !! | GGAAAGGCTTTGAAAGTTAG+AGG | - | chr4_1:79459610-79459629 | Msa0575570:CDS | 40.0% |
| AGTAGCAGCAATCATGTCAA+TGG | - | chr4_1:79459790-79459809 | Msa0575570:intron | 40.0% | |
| ! | GTCAATGGATTTCCTGGTTT+AGG | - | chr4_1:79459805-79459824 | Msa0575570:intron | 40.0% |
| ! | AATGGATTTCCTGGTTTAGG+AGG | - | chr4_1:79459808-79459827 | Msa0575570:intron | 40.0% |
| ! | ACATCATGCTTGGTAATTGG+GGG | - | chr4_1:79459913-79459932 | Msa0575570:intron | 40.0% |
| !!! | CTTGTTTTGCACATGGGAAT+TGG | + | chr4_1:79460094-79460113 | None:intergenic | 40.0% |
| !!! | CAACAGCTTGTTTTGCACAT+GGG | + | chr4_1:79460100-79460119 | None:intergenic | 40.0% |
| CATGCCACAATCACTAATGA+TGG | - | chr4_1:79460301-79460320 | Msa0575570:intron | 40.0% | |
| ACAACATCTGTAGCCACATT+TGG | - | chr4_1:79460415-79460434 | Msa0575570:intron | 40.0% | |
| ! | GTGGACTAATGGGATTAACA+TGG | - | chr4_1:79460971-79460990 | Msa0575570:CDS | 40.0% |
| CATGGCTTCTTGCTAAGAAT+AGG | - | chr4_1:79460989-79461008 | Msa0575570:CDS | 40.0% | |
| TAGGACAGCTTACATTCACA+CGG | - | chr4_1:79461008-79461027 | Msa0575570:CDS | 40.0% | |
| CTTACATTCACACGGTTACT+TGG | - | chr4_1:79461016-79461035 | Msa0575570:CDS | 40.0% | |
| TCAGAAGAATCAACAGCAAG+AGG | + | chr4_1:79461114-79461133 | None:intergenic | 40.0% | |
| CTGTTGCTGCATCAGGTATA+GGG | + | chr4_1:79459276-79459295 | None:intergenic | 45.0% | |
| ACTGTTGCTGCATCAGGTAT+AGG | + | chr4_1:79459277-79459296 | None:intergenic | 45.0% | |
| !! | GAAGATGGATTTGGTGTGAG+TGG | + | chr4_1:79459304-79459323 | None:intergenic | 45.0% |
| GGGATTGTTCCTTGTGAAGA+TGG | + | chr4_1:79459319-79459338 | None:intergenic | 45.0% | |
| ! | CTTGCAACATCAGCTTGTTC+AGG | + | chr4_1:79459349-79459368 | None:intergenic | 45.0% |
| ! | AGCAGCATGCTTGTTGGATT+TGG | + | chr4_1:79459428-79459447 | None:intergenic | 45.0% |
| ATCATCAGCAGCATGCTTGT+TGG | + | chr4_1:79459434-79459453 | None:intergenic | 45.0% | |
| TTCAAATCCACCAAGAGCAG+TGG | + | chr4_1:79459521-79459540 | None:intergenic | 45.0% | |
| !! | GCTCTTGGTGGATTTGAACA+TGG | - | chr4_1:79459523-79459542 | Msa0575570:CDS | 45.0% |
| ! | GGATGAAAGTGTGAAGAGAC+TGG | - | chr4_1:79459753-79459772 | Msa0575570:intron | 45.0% |
| ATAGAGGCTATGCAAGCACT+TGG | + | chr4_1:79459839-79459858 | None:intergenic | 45.0% | |
| GTGCTTGCATAGCCTCTATT+CGG | - | chr4_1:79459840-79459859 | Msa0575570:intron | 45.0% | |
| !!! | GCAACAGCTTGTTTTGCACA+TGG | + | chr4_1:79460101-79460120 | None:intergenic | 45.0% |
| GAACCACGGTGAATTTGACA+CGG | + | chr4_1:79460277-79460296 | None:intergenic | 45.0% | |
| ! | TTGTGGCATGTTTGGAACCA+CGG | + | chr4_1:79460291-79460310 | None:intergenic | 45.0% |
| ATTGTGGGTCAGATCCATCA+GGG | + | chr4_1:79461065-79461084 | None:intergenic | 45.0% | |
| CTGTTGCTGCATCAGGTATA+GGG | + | chr4_1:79459276-79459295 | None:intergenic | 45.0% | |
| ACTGTTGCTGCATCAGGTAT+AGG | + | chr4_1:79459277-79459296 | None:intergenic | 45.0% | |
| !! | GAAGATGGATTTGGTGTGAG+TGG | + | chr4_1:79459304-79459323 | None:intergenic | 45.0% |
| GGGATTGTTCCTTGTGAAGA+TGG | + | chr4_1:79459319-79459338 | None:intergenic | 45.0% | |
| ! | CTTGCAACATCAGCTTGTTC+AGG | + | chr4_1:79459349-79459368 | None:intergenic | 45.0% |
| ! | AGCAGCATGCTTGTTGGATT+TGG | + | chr4_1:79459428-79459447 | None:intergenic | 45.0% |
| ATCATCAGCAGCATGCTTGT+TGG | + | chr4_1:79459434-79459453 | None:intergenic | 45.0% | |
| TTCAAATCCACCAAGAGCAG+TGG | + | chr4_1:79459521-79459540 | None:intergenic | 45.0% | |
| !! | GCTCTTGGTGGATTTGAACA+TGG | - | chr4_1:79459523-79459542 | Msa0575570:CDS | 45.0% |
| ! | GGATGAAAGTGTGAAGAGAC+TGG | - | chr4_1:79459753-79459772 | Msa0575570:intron | 45.0% |
| ATAGAGGCTATGCAAGCACT+TGG | + | chr4_1:79459839-79459858 | None:intergenic | 45.0% | |
| GTGCTTGCATAGCCTCTATT+CGG | - | chr4_1:79459840-79459859 | Msa0575570:intron | 45.0% | |
| !!! | GCAACAGCTTGTTTTGCACA+TGG | + | chr4_1:79460101-79460120 | None:intergenic | 45.0% |
| GAACCACGGTGAATTTGACA+CGG | + | chr4_1:79460277-79460296 | None:intergenic | 45.0% | |
| ! | TTGTGGCATGTTTGGAACCA+CGG | + | chr4_1:79460291-79460310 | None:intergenic | 45.0% |
| ATTGTGGGTCAGATCCATCA+GGG | + | chr4_1:79461065-79461084 | None:intergenic | 45.0% | |
| !! | AAAATTATTATTAAAAATGT+TGG | - | chr4_1:79460527-79460546 | Msa0575570:intron | 5.0% |
| !! | AAAATTATTATTAAAAATGT+TGG | - | chr4_1:79460527-79460546 | Msa0575570:intron | 5.0% |
| GCTGCATCAGGTATAGGGAT+AGG | + | chr4_1:79459271-79459290 | None:intergenic | 50.0% | |
| GGTTGAACTGTTGCTGCATC+AGG | + | chr4_1:79459283-79459302 | None:intergenic | 50.0% | |
| ! | CAGCTTGTTCAGGAAAGGCA+GGG | + | chr4_1:79459339-79459358 | None:intergenic | 50.0% |
| ! | TCAGCTTGTTCAGGAAAGGC+AGG | + | chr4_1:79459340-79459359 | None:intergenic | 50.0% |
| ATAACCACGCAGCTAGAGCA+GGG | + | chr4_1:79459483-79459502 | None:intergenic | 50.0% | |
| TATAACCACGCAGCTAGAGC+AGG | + | chr4_1:79459484-79459503 | None:intergenic | 50.0% | |
| TTGGAGCAACCTCCTAAACC+AGG | + | chr4_1:79459820-79459839 | None:intergenic | 50.0% | |
| TCACCGTGTCAAATTCACCG+TGG | - | chr4_1:79460271-79460290 | Msa0575570:intron | 50.0% | |
| GCTTTGATGTTGAGCCCTGA+TGG | - | chr4_1:79461048-79461067 | Msa0575570:CDS | 50.0% | |
| GATTGTGGGTCAGATCCATC+AGG | + | chr4_1:79461066-79461085 | None:intergenic | 50.0% | |
| !! | AGCTTTGGTGCCTAGCTACT+AGG | - | chr4_1:79461299-79461318 | Msa0575570:CDS | 50.0% |
| GCTGCATCAGGTATAGGGAT+AGG | + | chr4_1:79459271-79459290 | None:intergenic | 50.0% | |
| GGTTGAACTGTTGCTGCATC+AGG | + | chr4_1:79459283-79459302 | None:intergenic | 50.0% | |
| ! | CAGCTTGTTCAGGAAAGGCA+GGG | + | chr4_1:79459339-79459358 | None:intergenic | 50.0% |
| ! | TCAGCTTGTTCAGGAAAGGC+AGG | + | chr4_1:79459340-79459359 | None:intergenic | 50.0% |
| ATAACCACGCAGCTAGAGCA+GGG | + | chr4_1:79459483-79459502 | None:intergenic | 50.0% | |
| TATAACCACGCAGCTAGAGC+AGG | + | chr4_1:79459484-79459503 | None:intergenic | 50.0% | |
| TTGGAGCAACCTCCTAAACC+AGG | + | chr4_1:79459820-79459839 | None:intergenic | 50.0% | |
| TCACCGTGTCAAATTCACCG+TGG | - | chr4_1:79460271-79460290 | Msa0575570:intron | 50.0% | |
| GCTTTGATGTTGAGCCCTGA+TGG | - | chr4_1:79461048-79461067 | Msa0575570:CDS | 50.0% | |
| GATTGTGGGTCAGATCCATC+AGG | + | chr4_1:79461066-79461085 | None:intergenic | 50.0% | |
| !! | AGCTTTGGTGCCTAGCTACT+AGG | - | chr4_1:79461299-79461318 | Msa0575570:CDS | 50.0% |
| GAGCAGGGCAACATCTGCTA+CGG | + | chr4_1:79459468-79459487 | None:intergenic | 55.0% | |
| GCTTACTCTGCCACTGCTCT+TGG | - | chr4_1:79459508-79459527 | Msa0575570:CDS | 55.0% | |
| TACTCTGCCACTGCTCTTGG+TGG | - | chr4_1:79459511-79459530 | Msa0575570:CDS | 55.0% | |
| GAGCAGGGCAACATCTGCTA+CGG | + | chr4_1:79459468-79459487 | None:intergenic | 55.0% | |
| GCTTACTCTGCCACTGCTCT+TGG | - | chr4_1:79459508-79459527 | Msa0575570:CDS | 55.0% | |
| TACTCTGCCACTGCTCTTGG+TGG | - | chr4_1:79459511-79459530 | Msa0575570:CDS | 55.0% | |
| CAGGGCAACATCTGCTACGG+TGG | + | chr4_1:79459465-79459484 | None:intergenic | 60.0% | |
| CAGGGCAACATCTGCTACGG+TGG | + | chr4_1:79459465-79459484 | None:intergenic | 60.0% | |
| GTTGCCCTGCTCTAGCTGCG+TGG | - | chr4_1:79459476-79459495 | Msa0575570:CDS | 65.0% | |
| GTTGCCCTGCTCTAGCTGCG+TGG | - | chr4_1:79459476-79459495 | Msa0575570:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79459097 | 79461444 | 79459097 | ID=Msa0575570;Name=Msa0575570 |
| chr4_1 | mRNA | 79459097 | 79461444 | 79459097 | ID=Msa0575570-mRNA-1;Parent=Msa0575570;Name=Msa0575570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=102|1|1|1|1|1|2|214|329 |
| chr4_1 | exon | 79459097 | 79459637 | 79459097 | ID=Msa0575570-mRNA-1:exon:28332;Parent=Msa0575570-mRNA-1 |
| chr4_1 | exon | 79460680 | 79461444 | 79460680 | ID=Msa0575570-mRNA-1:exon:28331;Parent=Msa0575570-mRNA-1 |
| chr4_1 | five_prime_UTR | 79461343 | 79461444 | 79461343 | ID=Msa0575570-mRNA-1:five_prime_utr;Parent=Msa0575570-mRNA-1 |
| chr4_1 | CDS | 79460680 | 79461342 | 79460680 | ID=Msa0575570-mRNA-1:cds;Parent=Msa0575570-mRNA-1 |
| chr4_1 | CDS | 79459311 | 79459637 | 79459311 | ID=Msa0575570-mRNA-1:cds;Parent=Msa0575570-mRNA-1 |
| chr4_1 | three_prime_UTR | 79459097 | 79459310 | 79459097 | ID=Msa0575570-mRNA-1:three_prime_utr;Parent=Msa0575570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
