AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1145450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1145450 MtrunA17_Chr1g0183121 94.755 591 22 3 1 590 1 583 0.0 1131
Msa1145450 MtrunA17_Chr4g0013761 81.356 590 102 4 1 585 1 587 0.0 949
Msa1145450 MtrunA17_Chr3g0078011 61.075 614 204 13 1 604 1 589 0.0 695
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1145450 AT1G71360.1 42.308 598 310 9 23 605 19 596 7.47e-150 445
Msa1145450 AT1G71360.2 43.216 597 306 10 23 605 45 622 3.01e-149 444
Msa1145450 AT1G22882.1 45.234 577 242 11 75 605 112 660 1.77e-145 436
Msa1145450 AT4G23950.1 41.809 409 215 6 196 602 170 557 4.78e-95 302
Msa1145450 AT4G23950.2 41.707 410 215 7 196 602 170 558 1.89e-93 298

Find 140 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCATTCTCTTCAGCTTA+TGG 0.145583 7_4:+22282335 Msa1145450:CDS
TTTAGGTATCTTACCCATTT+TGG 0.166001 7_4:-22283539 None:intergenic
GGCACCTTTCCCTTCTTTAT+TGG 0.187268 7_4:-22283261 None:intergenic
AGACCTAAATTTAATTGTTT+TGG 0.201241 7_4:+22283931 Msa1145450:CDS
CCGGGAGAAGCAGGTTTCTT+TGG 0.240817 7_4:+22286219 Msa1145450:CDS
AACTACATGCTCCTCTTTAT+TGG 0.244993 7_4:-22283018 None:intergenic
TTTCAGCTGGATTATCAAAT+TGG 0.258814 7_4:+22282784 Msa1145450:CDS
GCTCCAAAACAATTAAATTT+AGG 0.263875 7_4:-22283934 None:intergenic
TTGTTCTTAAAGAGCCAAAA+TGG 0.265261 7_4:+22283525 Msa1145450:CDS
CTTCCTACTGCTGCCTGCTT+AGG 0.266514 7_4:-22282117 None:intergenic
TTTGTGTGGGTAGCTCTTCC+TGG 0.271181 7_4:+22286374 Msa1145450:CDS
GGCTTTGAAGATTCAACTTT+AGG 0.274884 7_4:-22283556 None:intergenic
TTTATTGGAACCTAAAACTT+TGG 0.279402 7_4:-22283246 None:intergenic
ATCCCTGCTTAAGATATTAG+AGG 0.285746 7_4:-22283282 None:intergenic
TGCTTTGTTACGGCTATCTT+TGG 0.291860 7_4:+22286291 Msa1145450:CDS
TTTGAAAATATTGACATATC+TGG 0.300686 7_4:-22283978 None:intergenic
ACTCATTCTCTTCAGCTTAT+GGG 0.310092 7_4:+22282336 Msa1145450:CDS
GATTTCAAAGTCTTTCAAAT+TGG 0.322234 7_4:-22283420 None:intergenic
GTTACGGCTATCTTTGGATA+TGG 0.325038 7_4:+22286297 Msa1145450:CDS
TATTGACATATCTGGAGTTT+AGG 0.333964 7_4:-22283970 None:intergenic
CAACCAGTTGGCAGGATGCC+TGG 0.353646 7_4:+22283866 Msa1145450:CDS
ATGCTGGTGATCTCAATTCT+TGG 0.382007 7_4:+22284207 Msa1145450:CDS
TTCCTACTGCTGCCTGCTTA+GGG 0.383916 7_4:-22282116 None:intergenic
TTTCATTGATTGCTTTGTTA+CGG 0.388387 7_4:+22286281 Msa1145450:CDS
ACTGTTTGCCGTTTCATGAT+TGG 0.392357 7_4:-22283813 None:intergenic
ACGTAAAGCTCGCATGGAAT+TGG 0.396219 7_4:+22282219 Msa1145450:CDS
GAACTTTCCAACAGATGCTT+GGG 0.398646 7_4:+22283454 Msa1145450:CDS
ACTTAGTGTGCAATAAAATT+CGG 0.412768 7_4:-22283588 None:intergenic
TGGAAGTGTAATACATAGAT+TGG 0.414499 7_4:+22283178 Msa1145450:CDS
TGAACTTTCCAACAGATGCT+TGG 0.423228 7_4:+22283453 Msa1145450:CDS
ACTTTGGGCAGAGGAAGAAA+TGG 0.424463 7_4:-22282269 None:intergenic
GGTGGAGGTGCTGAGGCTAT+TGG 0.424475 7_4:+22282912 Msa1145450:CDS
GTCTCAAGTTTCTTTGCAGT+TGG 0.424631 7_4:+22284232 Msa1145450:CDS
CAAGACAATCTATTTGCATC+TGG 0.428687 7_4:+22283671 Msa1145450:CDS
GGTTGACGGATTTCTTCAAC+TGG 0.428942 7_4:-22283848 None:intergenic
AACCAGTTGGCAGGATGCCT+GGG 0.431096 7_4:+22283867 Msa1145450:CDS
CGGATTTCTTCAACTGGAGC+AGG 0.434396 7_4:-22283842 None:intergenic
TTGAATCTTCAAAGCCACTA+TGG 0.437657 7_4:+22283563 Msa1145450:CDS
GCTGAGGCTATTGGTTTAGT+TGG 0.437987 7_4:+22282921 Msa1145450:CDS
CCAAAGAAACCTGCTTCTCC+CGG 0.438181 7_4:-22286219 None:intergenic
TTGAAAGACTTTGAAATCCA+TGG 0.438972 7_4:+22283425 Msa1145450:CDS
CTTTGGGCAGAGGAAGAAAT+GGG 0.450705 7_4:-22282268 None:intergenic
GAAGCTTTATTATACTCTAA+AGG 0.451944 7_4:+22282891 Msa1145450:CDS
CAATTATGCTTCGGCATCAA+AGG 0.453952 7_4:+22283220 Msa1145450:CDS
GGTCCGAGGTTGAAAAGGTC+CGG 0.457513 7_4:+22286200 Msa1145450:intron
TTGAGCATGCCTCACATTTG+AGG 0.457552 7_4:-22283498 None:intergenic
GTTGACACTTGAGAGCTTTG+TGG 0.462454 7_4:-22282064 None:intergenic
GTGCCTCTAATATCTTAAGC+AGG 0.467275 7_4:+22283279 Msa1145450:CDS
GCCGTTTCATGATTGGAAGA+AGG 0.469531 7_4:-22283806 None:intergenic
ACCTCAAAACAGCATTGTCC+TGG 0.471683 7_4:-22284265 None:intergenic
TAATAAAGAACATACTGATT+CGG 0.472142 7_4:+22282995 Msa1145450:CDS
TCCCCAGGCATCCTGCCAAC+TGG 0.474677 7_4:-22283869 None:intergenic
TGAAAAGGTCCGGGAGAAGC+AGG 0.475416 7_4:+22286210 Msa1145450:CDS
CCGTTTCATGATTGGAAGAA+GGG 0.475600 7_4:-22283805 None:intergenic
ATCAGTTCTAAAGTTAAGTC+AGG 0.481166 7_4:+22283143 Msa1145450:CDS
ACTCTCAGCAGGATCGGGAT+GGG 0.483817 7_4:-22283726 None:intergenic
TTATCTCGGGCTGTGCCTCT+CGG 0.487582 7_4:+22283095 Msa1145450:CDS
GGATCTGAAGAGCTTTCAGC+TGG 0.490377 7_4:+22282771 Msa1145450:CDS
TGTTCACTCTCAGCAGGATC+GGG 0.492452 7_4:-22283731 None:intergenic
TAAGAATCTCATTGACCAGC+AGG 0.494809 7_4:+22284060 Msa1145450:CDS
AAGTCAGGCACTGATCAATC+TGG 0.498645 7_4:+22283158 Msa1145450:CDS
CACTCTCAGCAGGATCGGGA+TGG 0.499067 7_4:-22283727 None:intergenic
AAAATCTGATCTCTTATCTC+GGG 0.500552 7_4:+22283082 Msa1145450:CDS
CCCTTCTTCCAATCATGAAA+CGG 0.500904 7_4:+22283805 Msa1145450:CDS
TGTTCTTAAAGAGCCAAAAT+GGG 0.502493 7_4:+22283526 Msa1145450:CDS
GTTCTTCAGAAGATTAAAGA+AGG 0.507702 7_4:+22284034 Msa1145450:CDS
ATTCAGGTCCGAGGTTGAAA+AGG 0.511149 7_4:+22286195 Msa1145450:intron
GCAGGTTTCTTTGGAAAACA+AGG 0.518116 7_4:+22286228 Msa1145450:CDS
TTGATAGAACAGTTGACTCC+AGG 0.519777 7_4:+22286347 Msa1145450:CDS
AGTGGTGTTTATGCGCTACT+TGG 0.521605 7_4:+22282966 Msa1145450:CDS
AAATCCGTCAACCAGTTGGC+AGG 0.521805 7_4:+22283858 Msa1145450:CDS
TACTGATTCGGCCAATAAAG+AGG 0.522006 7_4:+22283007 Msa1145450:CDS
CTCTCAGCAGGATCGGGATG+GGG 0.523175 7_4:-22283725 None:intergenic
TTGGAAAGTTCAGACTTCCA+TGG 0.523368 7_4:-22283442 None:intergenic
TGCAGAATACAATTATGCTT+CGG 0.524753 7_4:+22283211 Msa1145450:CDS
CTTGTCATTCATCCCTAAGC+AGG 0.528045 7_4:+22282104 Msa1145450:five_prime_UTR
GCATCCTGCCAACTGGTTGA+CGG 0.530318 7_4:-22283862 None:intergenic
GAAGAAGGGATATCTGAAGC+AGG 0.532449 7_4:-22283791 None:intergenic
GTCTTGATGAGTTCAAGAGC+AGG 0.532869 7_4:+22283117 Msa1145450:CDS
GCAGTAGGAAGATGAGGGAG+GGG 0.532901 7_4:+22282129 Msa1145450:five_prime_UTR
TGAACATGTTCACTCTCAGC+AGG 0.537283 7_4:-22283737 None:intergenic
CAGGCAGCAGTAGGAAGATG+AGG 0.538403 7_4:+22282123 Msa1145450:five_prime_UTR
AGGAAAACCCAAGCATCTGT+TGG 0.540357 7_4:-22283461 None:intergenic
ATGTTCACTCTCAGCAGGAT+CGG 0.540435 7_4:-22283732 None:intergenic
TAATTGTATTCTGCACCTCC+AGG 0.543624 7_4:-22283203 None:intergenic
GTCCGAGGTTGAAAAGGTCC+GGG 0.545030 7_4:+22286201 Msa1145450:CDS
AATAAAATTCGGAACCATAG+TGG 0.546010 7_4:-22283577 None:intergenic
AATTATGCTTCGGCATCAAA+GGG 0.548259 7_4:+22283221 Msa1145450:CDS
GCAGTTGGATCATATACTCC+AGG 0.548439 7_4:+22284247 Msa1145450:CDS
GGTGTTTATGCGCTACTTGG+TGG 0.549516 7_4:+22282969 Msa1145450:CDS
TTATTATACTCTAAAGGTGG+AGG 0.555825 7_4:+22282897 Msa1145450:CDS
CTCTAAAGGTGGAGGTGCTG+AGG 0.557047 7_4:+22282905 Msa1145450:CDS
AATCTATTTGCATCTGGAGA+AGG 0.558454 7_4:+22283677 Msa1145450:CDS
TCACTCACTGATAGAGAAAG+TGG 0.559066 7_4:+22282948 Msa1145450:CDS
AGAACTTTCAGAAGAAACCT+TGG 0.560587 7_4:+22283358 Msa1145450:CDS
GAGATCACGTAAAGCTCGCA+TGG 0.568513 7_4:+22282213 Msa1145450:CDS
AAAATGGAAACTTTGGGCAG+AGG 0.570292 7_4:-22282278 None:intergenic
CTCGTGCAGGCAAAATATGC+TGG 0.571157 7_4:+22284191 Msa1145450:intron
CAAATGTGAGGCATGCTCAA+AGG 0.572982 7_4:+22283501 Msa1145450:CDS
ATGGGGTTATGAAGAAGAGA+AGG 0.573199 7_4:-22282250 None:intergenic
TTCTTAATAATTCAGGTCCG+AGG 0.575561 7_4:+22286186 Msa1145450:intron
TTAAATTTAGGTCTAGAGTA+CGG 0.576670 7_4:-22283922 None:intergenic
AGCTTATGGGTCACTCACAC+AGG 0.578454 7_4:+22282349 Msa1145450:CDS
ACACTTGAGAGCTTTGTGGT+TGG 0.578601 7_4:-22282060 None:intergenic
AGCAGTAGGAAGATGAGGGA+GGG 0.579739 7_4:+22282128 Msa1145450:five_prime_UTR
AGGGATATCTGAAGCAGGGT+GGG 0.581632 7_4:-22283786 None:intergenic
GGTTCCAATAAAGAAGGGAA+AGG 0.581843 7_4:+22283257 Msa1145450:CDS
ATCCTCCAGCATCCTCTCAA+CGG 0.584718 7_4:-22283636 None:intergenic
AATTTCTCCTCCACAGAACA+CGG 0.585511 7_4:-22283326 None:intergenic
TGATAGAACAGTTGACTCCA+GGG 0.585751 7_4:+22286348 Msa1145450:CDS
GTAATACATAGATTGGAGCC+TGG 0.586563 7_4:+22283185 Msa1145450:CDS
GCTACCCACACAAAATTCCC+TGG 0.586908 7_4:-22286365 None:intergenic
TACGCACTATAACATCCTGC+TGG 0.589181 7_4:-22284075 None:intergenic
CAGGTTTCTTTGGAAAACAA+GGG 0.589978 7_4:+22286229 Msa1145450:CDS
ATCTTGAGAACAGTATCCCC+AGG 0.590052 7_4:-22283884 None:intergenic
ATCCCTAAGCAGGCAGCAGT+AGG 0.595610 7_4:+22282114 Msa1145450:five_prime_UTR
CAGCAGTAGGAAGATGAGGG+AGG 0.595774 7_4:+22282127 Msa1145450:five_prime_UTR
TGCCTCTAATATCTTAAGCA+GGG 0.597312 7_4:+22283280 Msa1145450:CDS
GAGTATAATAAAGCTTCTGA+CGG 0.598371 7_4:-22282885 None:intergenic
GCTTTATTATACTCTAAAGG+TGG 0.599801 7_4:+22282894 Msa1145450:CDS
TTGAGGCAGTAAAATTCCCA+AGG 0.599930 7_4:-22283481 None:intergenic
GGATGCCGTTGAGAGGATGC+TGG 0.600025 7_4:+22283631 Msa1145450:CDS
TCTTCGAAATCCGTGTTCTG+TGG 0.607278 7_4:+22283316 Msa1145450:CDS
CAGATATTTCACAAAATCCG+TGG 0.609098 7_4:-22282818 None:intergenic
TTGGTGTGGATGCCGTTGAG+AGG 0.612570 7_4:+22283624 Msa1145450:CDS
TCGAAATCCGTGTTCTGTGG+AGG 0.612846 7_4:+22283319 Msa1145450:CDS
GAAGAAATCCGTCAACCAGT+TGG 0.616669 7_4:+22283854 Msa1145450:CDS
AGGCAGCAGTAGGAAGATGA+GGG 0.624964 7_4:+22282124 Msa1145450:five_prime_UTR
TCTTGATGAGTTCAAGAGCA+GGG 0.640578 7_4:+22283118 Msa1145450:CDS
TATTTCTACAGTATCTACCA+AGG 0.649127 7_4:-22283375 None:intergenic
ACCAGTTGGCAGGATGCCTG+GGG 0.649182 7_4:+22283868 Msa1145450:CDS
AATTGGAATCAAGTTAACCA+CGG 0.654455 7_4:+22282801 Msa1145450:CDS
AAGAAGGGATATCTGAAGCA+GGG 0.657621 7_4:-22283790 None:intergenic
AAGGGATATCTGAAGCAGGG+TGG 0.666617 7_4:-22283787 None:intergenic
ACTCAATAATAGAAGAAACC+AGG 0.679333 7_4:-22286392 None:intergenic
ATTGTGCAGAAGTCGAGTCG+CGG 0.701757 7_4:-22282176 None:intergenic
ATACATAGATTGGAGCCTGG+AGG 0.724979 7_4:+22283188 Msa1145450:CDS
TGCCGTTGAGAGGATGCTGG+AGG 0.725275 7_4:+22283634 Msa1145450:CDS
TTGAACTCATCAAGACCGAG+AGG 0.728710 7_4:-22283110 None:intergenic
TTTGGGCAGAGGAAGAAATG+GGG 0.747784 7_4:-22282267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATATAATAATGGAAA+TGG - chr7_4:22284603-22284622 None:intergenic 10.0%
!! TAAGGAATTAAATATAATAA+TGG - chr7_4:22284609-22284628 None:intergenic 10.0%
!!! ATTTTTTTTCTTAATAATTC+AGG + chr7_4:22286179-22286198 Msa1145450:intron 10.0%
!!! TTTATTATTTTGTATGTAGA+TGG + chr7_4:22282750-22282769 Msa1145450:intron 15.0%
!!! AAACCAAAATTTCAATTTTT+AGG + chr7_4:22285171-22285190 Msa1145450:intron 15.0%
!!! TTTTATTGAAATAATGAGAA+AGG + chr7_4:22285826-22285845 Msa1145450:intron 15.0%
!!! TTCTATTTCTTAATAAACTA+TGG - chr7_4:22286095-22286114 None:intergenic 15.0%
!! TTGATAAAAATGGAAACTTT+GGG - chr7_4:22282287-22282306 None:intergenic 20.0%
!!! TAATAAAGAACATACTGATT+CGG + chr7_4:22282995-22283014 Msa1145450:CDS 20.0%
!!! AGACCTAAATTTAATTGTTT+TGG + chr7_4:22283931-22283950 Msa1145450:CDS 20.0%
!!! TAAATTTAATTGTTTTGGAG+CGG + chr7_4:22283936-22283955 Msa1145450:CDS 20.0%
!! TTTGAAAATATTGACATATC+TGG - chr7_4:22283981-22284000 None:intergenic 20.0%
!! TACCTAGTGTAAATATTAAT+TGG + chr7_4:22284356-22284375 Msa1145450:intron 20.0%
!! ACATGTGAATAAACTATATT+GGG - chr7_4:22284396-22284415 None:intergenic 20.0%
!! TACATGTGAATAAACTATAT+TGG - chr7_4:22284397-22284416 None:intergenic 20.0%
!! TATTCACATGTATTAGAATA+AGG + chr7_4:22284405-22284424 Msa1145450:intron 20.0%
!!! CATCCTAAAAATTGAAATTT+TGG - chr7_4:22285177-22285196 None:intergenic 20.0%
!!! CAAAATTTCAATTTTTAGGA+TGG + chr7_4:22285175-22285194 Msa1145450:intron 20.0%
!! ATTGTAATTTCTGTAACTTA+TGG - chr7_4:22285239-22285258 None:intergenic 20.0%
!! TTAAAAATTGTGTGATTCAA+AGG + chr7_4:22285300-22285319 Msa1145450:intron 20.0%
!! ATCATAAATGATCTATCAAT+CGG - chr7_4:22285372-22285391 None:intergenic 20.0%
!! ATTGATAGATCATTTATGAT+TGG + chr7_4:22285372-22285391 Msa1145450:intron 20.0%
!! TTGATAGATCATTTATGATT+GGG + chr7_4:22285373-22285392 Msa1145450:intron 20.0%
!! TTGTAAATAGATATGTGTTA+GGG - chr7_4:22285713-22285732 None:intergenic 20.0%
!! TATTTCTTAATAAACTATGG+TGG - chr7_4:22286092-22286111 None:intergenic 20.0%
!! GTTGATAAAAATGGAAACTT+TGG - chr7_4:22282288-22282307 None:intergenic 25.0%
! AACAAATTAACCACTAACAT+CGG - chr7_4:22282445-22282464 None:intergenic 25.0%
!! CACAAAGTGTTATCAAATAA+AGG + chr7_4:22282546-22282565 Msa1145450:intron 25.0%
! TTATCAAATAAAGGCTATAG+TGG + chr7_4:22282555-22282574 Msa1145450:intron 25.0%
! AAAAATAATTGGATGACAGA+TGG - chr7_4:22282690-22282709 None:intergenic 25.0%
! TGCAACGAAGTAAAAATAAT+TGG - chr7_4:22282701-22282720 None:intergenic 25.0%
!!! GAAGCTTTATTATACTCTAA+AGG + chr7_4:22282891-22282910 Msa1145450:CDS 25.0%
! AAAAATCTGATCTCTTATCT+CGG + chr7_4:22283081-22283100 Msa1145450:CDS 25.0%
! TTTATTGGAACCTAAAACTT+TGG - chr7_4:22283249-22283268 None:intergenic 25.0%
!!! TTTTAGGTTCCAATAAAGAA+GGG + chr7_4:22283252-22283271 Msa1145450:CDS 25.0%
! GATTTCAAAGTCTTTCAAAT+TGG - chr7_4:22283423-22283442 None:intergenic 25.0%
! ACTTAGTGTGCAATAAAATT+CGG - chr7_4:22283591-22283610 None:intergenic 25.0%
!! TTAAATTTAGGTCTAGAGTA+CGG - chr7_4:22283925-22283944 None:intergenic 25.0%
! GCTCCAAAACAATTAAATTT+AGG - chr7_4:22283937-22283956 None:intergenic 25.0%
! ATTTCCAAAATGAATAGAGT+AGG - chr7_4:22284162-22284181 None:intergenic 25.0%
! ACATGTATTAGAATAAGGAT+GGG + chr7_4:22284410-22284429 Msa1145450:intron 25.0%
! AGTTTACTGATAGATGAATA+AGG - chr7_4:22284627-22284646 None:intergenic 25.0%
! ATTCATCTATCAGTAAACTT+CGG + chr7_4:22284628-22284647 Msa1145450:intron 25.0%
! AAACTATATAAGCACAACTT+AGG - chr7_4:22285049-22285068 None:intergenic 25.0%
! TAAGTTGTGCTTATATAGTT+TGG + chr7_4:22285048-22285067 Msa1145450:intron 25.0%
! AAGTTGTGCTTATATAGTTT+GGG + chr7_4:22285049-22285068 Msa1145450:intron 25.0%
!!! ACTTTACAAGTTGGTTTTAT+AGG + chr7_4:22285080-22285099 Msa1145450:intron 25.0%
!! TGGATCTTAAAATTTGAGTT+GGG - chr7_4:22285116-22285135 None:intergenic 25.0%
!! AAATTTCTGAAAGAAAGACA+AGG + chr7_4:22285398-22285417 Msa1145450:intron 25.0%
! GTTGTAAATAGATATGTGTT+AGG - chr7_4:22285714-22285733 None:intergenic 25.0%
! TTACTTTGTAGTCATTTGTT+AGG + chr7_4:22285772-22285791 Msa1145450:intron 25.0%
!! ACTCTTTTCAATTCAATTCT+GGG - chr7_4:22285800-22285819 None:intergenic 25.0%
! AATAAACCTCCTATTTATAC+AGG + chr7_4:22285956-22285975 Msa1145450:intron 25.0%
! TTGACATTATTTACTGTTTC+TGG + chr7_4:22286015-22286034 Msa1145450:intron 25.0%
! AATAAACTATGGTGGTAAAA+AGG - chr7_4:22286084-22286103 None:intergenic 25.0%
! CTACGAACTATATAGTTATT+TGG + chr7_4:22286149-22286168 Msa1145450:intron 25.0%
!! TTTCATTGATTGCTTTGTTA+CGG + chr7_4:22286281-22286300 Msa1145450:CDS 25.0%
!! GCAGAGAAAGTTGATAAAAA+TGG - chr7_4:22282297-22282316 None:intergenic 30.0%
!!! TTTCTCTGCTTTTTGATTTG+TGG + chr7_4:22282308-22282327 Msa1145450:CDS 30.0%
!!! TTCTCTGCTTTTTGATTTGT+GGG + chr7_4:22282309-22282328 Msa1145450:CDS 30.0%
AGAAACAAAACAAGAAAGGA+TGG - chr7_4:22282392-22282411 None:intergenic 30.0%
GGAAAGAAACAAAACAAGAA+AGG - chr7_4:22282396-22282415 None:intergenic 30.0%
!! GTTAGTGGTTAATTTGTTCT+CGG + chr7_4:22282447-22282466 Msa1145450:intron 30.0%
!! ATAGTCTTATACTTTGTGGT+TGG + chr7_4:22282595-22282614 Msa1145450:intron 30.0%
!! TAGTCTTATACTTTGTGGTT+GGG + chr7_4:22282596-22282615 Msa1145450:intron 30.0%
GAGCAAGTATTTATAAGTGA+GGG - chr7_4:22282664-22282683 None:intergenic 30.0%
TGAGCAAGTATTTATAAGTG+AGG - chr7_4:22282665-22282684 None:intergenic 30.0%
CATACGTCTCATAATCTTAT+TGG + chr7_4:22282723-22282742 Msa1145450:intron 30.0%
TTTCAGCTGGATTATCAAAT+TGG + chr7_4:22282784-22282803 Msa1145450:CDS 30.0%
AATTGGAATCAAGTTAACCA+CGG + chr7_4:22282801-22282820 Msa1145450:CDS 30.0%
GAGTATAATAAAGCTTCTGA+CGG - chr7_4:22282888-22282907 None:intergenic 30.0%
! GCTTTATTATACTCTAAAGG+TGG + chr7_4:22282894-22282913 Msa1145450:CDS 30.0%
! TTATTATACTCTAAAGGTGG+AGG + chr7_4:22282897-22282916 Msa1145450:CDS 30.0%
AAAATCTGATCTCTTATCTC+GGG + chr7_4:22283082-22283101 Msa1145450:CDS 30.0%
!! ATCAGTTCTAAAGTTAAGTC+AGG + chr7_4:22283143-22283162 Msa1145450:CDS 30.0%
! TGGAAGTGTAATACATAGAT+TGG + chr7_4:22283178-22283197 Msa1145450:CDS 30.0%
TGCAGAATACAATTATGCTT+CGG + chr7_4:22283211-22283230 Msa1145450:CDS 30.0%
!!! GTTTTAGGTTCCAATAAAGA+AGG + chr7_4:22283251-22283270 Msa1145450:CDS 30.0%
! TATTTCTACAGTATCTACCA+AGG - chr7_4:22283378-22283397 None:intergenic 30.0%
!! TTGAAAGACTTTGAAATCCA+TGG + chr7_4:22283425-22283444 Msa1145450:CDS 30.0%
TTGTTCTTAAAGAGCCAAAA+TGG + chr7_4:22283525-22283544 Msa1145450:CDS 30.0%
TGTTCTTAAAGAGCCAAAAT+GGG + chr7_4:22283526-22283545 Msa1145450:CDS 30.0%
! TTTAGGTATCTTACCCATTT+TGG - chr7_4:22283542-22283561 None:intergenic 30.0%
AATAAAATTCGGAACCATAG+TGG - chr7_4:22283580-22283599 None:intergenic 30.0%
!! CTAAGTGTTGTTGAAGTTTT+TGG + chr7_4:22283605-22283624 Msa1145450:CDS 30.0%
! TATTGACATATCTGGAGTTT+AGG - chr7_4:22283973-22283992 None:intergenic 30.0%
GTTCTTCAGAAGATTAAAGA+AGG + chr7_4:22284034-22284053 Msa1145450:CDS 30.0%
! TATAGTGCGTAATTTTGTCA+TGG + chr7_4:22284087-22284106 Msa1145450:intron 30.0%
! CTATCCTACTCTATTCATTT+TGG + chr7_4:22284155-22284174 Msa1145450:intron 30.0%
GGCCAATTAATATTTACACT+AGG - chr7_4:22284361-22284380 None:intergenic 30.0%
CACATGTATTAGAATAAGGA+TGG + chr7_4:22284409-22284428 Msa1145450:intron 30.0%
TCAATAGAAGTTCACTTGTT+GGG - chr7_4:22284804-22284823 None:intergenic 30.0%
TTCAATAGAAGTTCACTTGT+TGG - chr7_4:22284805-22284824 None:intergenic 30.0%
AGTGAACTTCTATTGAAACA+TGG + chr7_4:22284808-22284827 Msa1145450:intron 30.0%
!!! TTGGTTTTATAGGTTGAGTT+AGG + chr7_4:22285090-22285109 Msa1145450:intron 30.0%
CTGGATCTTAAAATTTGAGT+TGG - chr7_4:22285117-22285136 None:intergenic 30.0%
TTATTTACGAACTGATGCAT+CGG + chr7_4:22285211-22285230 Msa1145450:intron 30.0%
TGAAAGAAAGACAAGGAAAA+AGG + chr7_4:22285405-22285424 Msa1145450:intron 30.0%
GAAAGAAAGACAAGGAAAAA+GGG + chr7_4:22285406-22285425 Msa1145450:intron 30.0%
AGAATCAGAAAAAACCCAAT+TGG + chr7_4:22285603-22285622 Msa1145450:intron 30.0%
TAATTTCCTAAACGACTCTT+AGG + chr7_4:22285680-22285699 Msa1145450:intron 30.0%
! CACTCTTTTCAATTCAATTC+TGG - chr7_4:22285801-22285820 None:intergenic 30.0%
GTAGGATATCCTGTATAAAT+AGG - chr7_4:22285968-22285987 None:intergenic 30.0%
TGTATGACGATAATACACTT+AGG + chr7_4:22285988-22286007 Msa1145450:intron 30.0%
ACTCAATAATAGAAGAAACC+AGG - chr7_4:22286395-22286414 None:intergenic 30.0%
TACTCATTCTCTTCAGCTTA+TGG + chr7_4:22282335-22282354 Msa1145450:CDS 35.0%
ACTCATTCTCTTCAGCTTAT+GGG + chr7_4:22282336-22282355 Msa1145450:CDS 35.0%
!!! GTTTTGTTTCTTTCCATTCC+AGG + chr7_4:22282401-22282420 Msa1145450:intron 35.0%
TTGTTGGTATCATAGCATAG+CGG + chr7_4:22282482-22282501 Msa1145450:intron 35.0%
!! CAGCATAGTCTTATACTTTG+TGG + chr7_4:22282591-22282610 Msa1145450:intron 35.0%
CAGATATTTCACAAAATCCG+TGG - chr7_4:22282821-22282840 None:intergenic 35.0%
AACTACATGCTCCTCTTTAT+TGG - chr7_4:22283021-22283040 None:intergenic 35.0%
AATTATGCTTCGGCATCAAA+GGG + chr7_4:22283221-22283240 Msa1145450:CDS 35.0%
TGCCTCTAATATCTTAAGCA+GGG + chr7_4:22283280-22283299 Msa1145450:CDS 35.0%
ATCCCTGCTTAAGATATTAG+AGG - chr7_4:22283285-22283304 None:intergenic 35.0%
AGAACTTTCAGAAGAAACCT+TGG + chr7_4:22283358-22283377 Msa1145450:CDS 35.0%
! ATTTTACTGCCTCAAATGTG+AGG + chr7_4:22283489-22283508 Msa1145450:CDS 35.0%
!! GGCTTTGAAGATTCAACTTT+AGG - chr7_4:22283559-22283578 None:intergenic 35.0%
TTGAATCTTCAAAGCCACTA+TGG + chr7_4:22283563-22283582 Msa1145450:CDS 35.0%
!!! TGTTGTTGAAGTTTTTGGTG+TGG + chr7_4:22283610-22283629 Msa1145450:CDS 35.0%
CAAGACAATCTATTTGCATC+TGG + chr7_4:22283671-22283690 Msa1145450:CDS 35.0%
AATCTATTTGCATCTGGAGA+AGG + chr7_4:22283677-22283696 Msa1145450:CDS 35.0%
! TGTTCAGCAAAACACTTTTG+AGG + chr7_4:22283754-22283773 Msa1145450:CDS 35.0%
! GTTCAGCAAAACACTTTTGA+GGG + chr7_4:22283755-22283774 Msa1145450:CDS 35.0%
! TTCAGCAAAACACTTTTGAG+GGG + chr7_4:22283756-22283775 Msa1145450:CDS 35.0%
!!! AATTGTTTTGGAGCGGTATA+TGG + chr7_4:22283943-22283962 Msa1145450:CDS 35.0%
ATTTCTGACCATATGAACTC+AGG + chr7_4:22284316-22284335 Msa1145450:intron 35.0%
TATTAATTGGCCCAATAGAC+AGG + chr7_4:22284369-22284388 Msa1145450:intron 35.0%
ATTAATTGGCCCAATAGACA+GGG + chr7_4:22284370-22284389 Msa1145450:intron 35.0%
GATGGGCATTTATTGCTAAT+CGG + chr7_4:22284427-22284446 Msa1145450:intron 35.0%
TGCTAATCGGTTGTTTATGT+TGG + chr7_4:22284440-22284459 Msa1145450:intron 35.0%
TTGTTTATGTTGGAGAGACT+AGG + chr7_4:22284450-22284469 Msa1145450:intron 35.0%
ACAGAGACAATTTCACAACA+GGG - chr7_4:22284541-22284560 None:intergenic 35.0%
AACAGAGACAATTTCACAAC+AGG - chr7_4:22284542-22284561 None:intergenic 35.0%
TGTTGTGAAATTGTCTCTGT+TGG + chr7_4:22284541-22284560 Msa1145450:intron 35.0%
GCACTATTATTGAACTTCTC+TGG - chr7_4:22284575-22284594 None:intergenic 35.0%
!!! TTTTTTTGTCACTGACCAGT+CGG - chr7_4:22284729-22284748 None:intergenic 35.0%
AAATAGTGAACTACTGACAG+TGG + chr7_4:22284747-22284766 Msa1145450:intron 35.0%
AATAGTGAACTACTGACAGT+GGG + chr7_4:22284748-22284767 Msa1145450:intron 35.0%
GATGTATTCAAACTTGACGT+TGG + chr7_4:22284892-22284911 Msa1145450:intron 35.0%
ATTTAGTCCTACATTGCCTA+AGG + chr7_4:22285023-22285042 Msa1145450:intron 35.0%
AGTACAATACACCAAATGGT+GGG - chr7_4:22285480-22285499 None:intergenic 35.0%
GTTGAGTACAATACACCAAA+TGG - chr7_4:22285484-22285503 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr7_4:22285506-22285525 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr7_4:22285505-22285524 Msa1145450:intron 35.0%
TCTGATTCTTTCCTTAACCT+TGG - chr7_4:22285592-22285611 None:intergenic 35.0%
! GAAAAGTGGATTCTTTCCTT+GGG - chr7_4:22285636-22285655 None:intergenic 35.0%
! TGAAAAGTGGATTCTTTCCT+TGG - chr7_4:22285637-22285656 None:intergenic 35.0%
!! GGAAAGAATCCACTTTTCAA+CGG + chr7_4:22285638-22285657 Msa1145450:intron 35.0%
!! GAAAGAATCCACTTTTCAAC+GGG + chr7_4:22285639-22285658 Msa1145450:intron 35.0%
GAGGTTTATTGAGTTAGAGA+GGG - chr7_4:22285946-22285965 None:intergenic 35.0%
GGATATCCTGTATAAATAGG+AGG - chr7_4:22285965-22285984 None:intergenic 35.0%
GTGTATTATCGTCATACAGT+AGG - chr7_4:22285986-22286005 None:intergenic 35.0%
TTCTTAATAATTCAGGTCCG+AGG + chr7_4:22286186-22286205 Msa1145450:intron 35.0%
! CAGGTTTCTTTGGAAAACAA+GGG + chr7_4:22286229-22286248 Msa1145450:CDS 35.0%
ATGGGGTTATGAAGAAGAGA+AGG - chr7_4:22282253-22282272 None:intergenic 40.0%
AAAATGGAAACTTTGGGCAG+AGG - chr7_4:22282281-22282300 None:intergenic 40.0%
!! GGTTAATTTGTTCTCGGATG+AGG + chr7_4:22282453-22282472 Msa1145450:intron 40.0%
!! TAATTTGTTCTCGGATGAGG+AGG + chr7_4:22282456-22282475 Msa1145450:intron 40.0%
! AATTTGTTCTCGGATGAGGA+GGG + chr7_4:22282457-22282476 Msa1145450:intron 40.0%
TTAACTCAACCCCAACAAAC+CGG + chr7_4:22282620-22282639 Msa1145450:intron 40.0%
TCACTCACTGATAGAGAAAG+TGG + chr7_4:22282948-22282967 Msa1145450:CDS 40.0%
!! TACTGATTCGGCCAATAAAG+AGG + chr7_4:22283007-22283026 Msa1145450:CDS 40.0%
TCTTGATGAGTTCAAGAGCA+GGG + chr7_4:22283118-22283137 Msa1145450:CDS 40.0%
GTAATACATAGATTGGAGCC+TGG + chr7_4:22283185-22283204 Msa1145450:CDS 40.0%
TAATTGTATTCTGCACCTCC+AGG - chr7_4:22283206-22283225 None:intergenic 40.0%
CAATTATGCTTCGGCATCAA+AGG + chr7_4:22283220-22283239 Msa1145450:CDS 40.0%
! TCAAAGGGAGCCAAAGTTTT+AGG + chr7_4:22283236-22283255 Msa1145450:CDS 40.0%
GGTTCCAATAAAGAAGGGAA+AGG + chr7_4:22283257-22283276 Msa1145450:CDS 40.0%
GTGCCTCTAATATCTTAAGC+AGG + chr7_4:22283279-22283298 Msa1145450:CDS 40.0%
AATTTCTCCTCCACAGAACA+CGG - chr7_4:22283329-22283348 None:intergenic 40.0%
TTGGAAAGTTCAGACTTCCA+TGG - chr7_4:22283445-22283464 None:intergenic 40.0%
TGAACTTTCCAACAGATGCT+TGG + chr7_4:22283453-22283472 Msa1145450:CDS 40.0%
GAACTTTCCAACAGATGCTT+GGG + chr7_4:22283454-22283473 Msa1145450:CDS 40.0%
TTGAGGCAGTAAAATTCCCA+AGG - chr7_4:22283484-22283503 None:intergenic 40.0%
! AAGAAGGGATATCTGAAGCA+GGG - chr7_4:22283793-22283812 None:intergenic 40.0%
CCGTTTCATGATTGGAAGAA+GGG - chr7_4:22283808-22283827 None:intergenic 40.0%
CCCTTCTTCCAATCATGAAA+CGG + chr7_4:22283805-22283824 Msa1145450:CDS 40.0%
! ACTGTTTGCCGTTTCATGAT+TGG - chr7_4:22283816-22283835 None:intergenic 40.0%
TAAGAATCTCATTGACCAGC+AGG + chr7_4:22284060-22284079 Msa1145450:CDS 40.0%
ATGCTGGTGATCTCAATTCT+TGG + chr7_4:22284207-22284226 Msa1145450:CDS 40.0%
GTCTCAAGTTTCTTTGCAGT+TGG + chr7_4:22284232-22284251 Msa1145450:CDS 40.0%
AATGAGCTCCTGAGTTCATA+TGG - chr7_4:22284327-22284346 None:intergenic 40.0%
TATATTGGGCCCTGTCTATT+GGG - chr7_4:22284382-22284401 None:intergenic 40.0%
CAGAGACAATTTCACAACAG+GGG - chr7_4:22284540-22284559 None:intergenic 40.0%
CATCTATCAGTAAACTTCGG+AGG + chr7_4:22284631-22284650 Msa1145450:intron 40.0%
GAACTCCGATAGAAAGACTA+AGG - chr7_4:22284695-22284714 None:intergenic 40.0%
!!! TTTTTTGTCACTGACCAGTC+GGG - chr7_4:22284728-22284747 None:intergenic 40.0%
CAGAATAAACTAGCCAGATC+TGG + chr7_4:22284778-22284797 Msa1145450:intron 40.0%
ATAAGCACAACTTAGGCCTT+AGG - chr7_4:22285042-22285061 None:intergenic 40.0%
GCTGTACTCACTTTACAAGT+TGG + chr7_4:22285071-22285090 Msa1145450:intron 40.0%
CAGAAGCTCGTCATCAAAAT+CGG - chr7_4:22285146-22285165 None:intergenic 40.0%
TTCAAAGGCTCTGCTGATAT+TGG + chr7_4:22285315-22285334 Msa1145450:intron 40.0%
ATTGGTACTCCCTCGAAAAA+CGG + chr7_4:22285333-22285352 Msa1145450:intron 40.0%
GAGTACAATACACCAAATGG+TGG - chr7_4:22285481-22285500 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr7_4:22285511-22285530 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr7_4:22285512-22285531 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG - chr7_4:22285556-22285575 None:intergenic 40.0%
! ACTGTTTTCCCGTTGAAAAG+TGG - chr7_4:22285650-22285669 None:intergenic 40.0%
AGTACACCTAAGAGTCGTTT+AGG - chr7_4:22285689-22285708 None:intergenic 40.0%
AGTTAGCTACTTAGCTGAAG+TGG - chr7_4:22285748-22285767 None:intergenic 40.0%
AGTAGTGACTCTTTGTGAAG+GGG - chr7_4:22285892-22285911 None:intergenic 40.0%
GAGTAGTGACTCTTTGTGAA+GGG - chr7_4:22285893-22285912 None:intergenic 40.0%
AGAGTAGTGACTCTTTGTGA+AGG - chr7_4:22285894-22285913 None:intergenic 40.0%
GGAGGTTTATTGAGTTAGAG+AGG - chr7_4:22285947-22285966 None:intergenic 40.0%
! GGTCATTGCTCTAAGTTTAG+TGG + chr7_4:22286036-22286055 Msa1145450:intron 40.0%
! GCAGGTTTCTTTGGAAAACA+AGG + chr7_4:22286228-22286247 Msa1145450:CDS 40.0%
! TGCTTTGTTACGGCTATCTT+TGG + chr7_4:22286291-22286310 Msa1145450:CDS 40.0%
GTTACGGCTATCTTTGGATA+TGG + chr7_4:22286297-22286316 Msa1145450:CDS 40.0%
! TTGATAGAACAGTTGACTCC+AGG + chr7_4:22286347-22286366 Msa1145450:CDS 40.0%
! TGATAGAACAGTTGACTCCA+GGG + chr7_4:22286348-22286367 Msa1145450:CDS 40.0%
! ACACTTGAGAGCTTTGTGGT+TGG - chr7_4:22282063-22282082 None:intergenic 45.0%
GTTGACACTTGAGAGCTTTG+TGG - chr7_4:22282067-22282086 None:intergenic 45.0%
CTTGTCATTCATCCCTAAGC+AGG + chr7_4:22282104-22282123 Msa1145450:five_prime_UTR 45.0%
ACGTAAAGCTCGCATGGAAT+TGG + chr7_4:22282219-22282238 Msa1145450:CDS 45.0%
TTTGGGCAGAGGAAGAAATG+GGG - chr7_4:22282270-22282289 None:intergenic 45.0%
CTTTGGGCAGAGGAAGAAAT+GGG - chr7_4:22282271-22282290 None:intergenic 45.0%
ACTTTGGGCAGAGGAAGAAA+TGG - chr7_4:22282272-22282291 None:intergenic 45.0%
GTTTCTTTCCATTCCAGGCA+TGG + chr7_4:22282406-22282425 Msa1145450:intron 45.0%
GACTTATAGGCCGATGTTAG+TGG + chr7_4:22282432-22282451 Msa1145450:intron 45.0%
!! GCTGAGGCTATTGGTTTAGT+TGG + chr7_4:22282921-22282940 Msa1145450:CDS 45.0%
AGTGGTGTTTATGCGCTACT+TGG + chr7_4:22282966-22282985 Msa1145450:CDS 45.0%
TTGAACTCATCAAGACCGAG+AGG - chr7_4:22283113-22283132 None:intergenic 45.0%
GTCTTGATGAGTTCAAGAGC+AGG + chr7_4:22283117-22283136 Msa1145450:CDS 45.0%
!! AAGTCAGGCACTGATCAATC+TGG + chr7_4:22283158-22283177 Msa1145450:CDS 45.0%
ATACATAGATTGGAGCCTGG+AGG + chr7_4:22283188-22283207 Msa1145450:CDS 45.0%
GGCACCTTTCCCTTCTTTAT+TGG - chr7_4:22283264-22283283 None:intergenic 45.0%
TCTTCGAAATCCGTGTTCTG+TGG + chr7_4:22283316-22283335 Msa1145450:CDS 45.0%
AGGAAAACCCAAGCATCTGT+TGG - chr7_4:22283464-22283483 None:intergenic 45.0%
! ACAGATGCTTGGGTTTTCCT+TGG + chr7_4:22283464-22283483 Msa1145450:CDS 45.0%
! CAGATGCTTGGGTTTTCCTT+GGG + chr7_4:22283465-22283484 Msa1145450:CDS 45.0%
TTGAGCATGCCTCACATTTG+AGG - chr7_4:22283501-22283520 None:intergenic 45.0%
CAAATGTGAGGCATGCTCAA+AGG + chr7_4:22283501-22283520 Msa1145450:CDS 45.0%
ATGTTCACTCTCAGCAGGAT+CGG - chr7_4:22283735-22283754 None:intergenic 45.0%
TGAACATGTTCACTCTCAGC+AGG - chr7_4:22283740-22283759 None:intergenic 45.0%
! GAAGAAGGGATATCTGAAGC+AGG - chr7_4:22283794-22283813 None:intergenic 45.0%
GCCGTTTCATGATTGGAAGA+AGG - chr7_4:22283809-22283828 None:intergenic 45.0%
!! GGTTGACGGATTTCTTCAAC+TGG - chr7_4:22283851-22283870 None:intergenic 45.0%
GAAGAAATCCGTCAACCAGT+TGG + chr7_4:22283854-22283873 Msa1145450:CDS 45.0%
ATCTTGAGAACAGTATCCCC+AGG - chr7_4:22283887-22283906 None:intergenic 45.0%
TACGCACTATAACATCCTGC+TGG - chr7_4:22284078-22284097 None:intergenic 45.0%
AAATGATTCGTTGCTCGTGC+AGG + chr7_4:22284178-22284197 Msa1145450:intron 45.0%
GCAGTTGGATCATATACTCC+AGG + chr7_4:22284247-22284266 Msa1145450:CDS 45.0%
!!! TCCAGGACAATGCTGTTTTG+AGG + chr7_4:22284264-22284283 Msa1145450:CDS 45.0%
ACCTCAAAACAGCATTGTCC+TGG - chr7_4:22284268-22284287 None:intergenic 45.0%
CTATATTGGGCCCTGTCTAT+TGG - chr7_4:22284383-22284402 None:intergenic 45.0%
AGAGACTAGGCTCGAATTAG+AGG + chr7_4:22284463-22284482 Msa1145450:intron 45.0%
CCGATAGAAAGACTAAGGCA+GGG - chr7_4:22284690-22284709 None:intergenic 45.0%
! CCCTGCCTTAGTCTTTCTAT+CGG + chr7_4:22284687-22284706 Msa1145450:intron 45.0%
TCCGATAGAAAGACTAAGGC+AGG - chr7_4:22284691-22284710 None:intergenic 45.0%
GGAGACTACAACTGCAACAA+AGG - chr7_4:22284973-22284992 None:intergenic 45.0%
! AGTCTCCAGCACCATTGTTT+TGG + chr7_4:22284986-22285005 Msa1145450:intron 45.0%
! GTCTCCAGCACCATTGTTTT+GGG + chr7_4:22284987-22285006 Msa1145450:intron 45.0%
!!! CACCATTGTTTTGGGTGTGA+GGG + chr7_4:22284995-22285014 Msa1145450:intron 45.0%
!!! ACCATTGTTTTGGGTGTGAG+GGG + chr7_4:22284996-22285015 Msa1145450:intron 45.0%
ACTTAGGCCTTAGGCAATGT+AGG - chr7_4:22285033-22285052 None:intergenic 45.0%
TCATCAAAATCGGCAGATGC+TGG - chr7_4:22285136-22285155 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr7_4:22285516-22285535 Msa1145450:intron 45.0%
CCTTGGGAGCAAAACCAATT+GGG - chr7_4:22285620-22285639 None:intergenic 45.0%
TCCTTGGGAGCAAAACCAAT+TGG - chr7_4:22285621-22285640 None:intergenic 45.0%
TGAGAGAAATCTCTCCTCCA+AGG + chr7_4:22285862-22285881 Msa1145450:intron 45.0%
GAGAGAAATCTCTCCTCCAA+GGG + chr7_4:22285863-22285882 Msa1145450:intron 45.0%
ATTCAGGTCCGAGGTTGAAA+AGG + chr7_4:22286195-22286214 Msa1145450:intron 45.0%
! TGACTCCAGGGAATTTTGTG+TGG + chr7_4:22286360-22286379 Msa1145450:CDS 45.0%
! GACTCCAGGGAATTTTGTGT+GGG + chr7_4:22286361-22286380 Msa1145450:CDS 45.0%
TTCCTACTGCTGCCTGCTTA+GGG - chr7_4:22282119-22282138 None:intergenic 50.0%
AGGCAGCAGTAGGAAGATGA+GGG + chr7_4:22282124-22282143 Msa1145450:five_prime_UTR 50.0%
AGCAGTAGGAAGATGAGGGA+GGG + chr7_4:22282128-22282147 Msa1145450:five_prime_UTR 50.0%
ATTGTGCAGAAGTCGAGTCG+CGG - chr7_4:22282179-22282198 None:intergenic 50.0%
GAGATCACGTAAAGCTCGCA+TGG + chr7_4:22282213-22282232 Msa1145450:CDS 50.0%
AGCTTATGGGTCACTCACAC+AGG + chr7_4:22282349-22282368 Msa1145450:CDS 50.0%
CTTTCCATTCCAGGCATGGT+AGG + chr7_4:22282410-22282429 Msa1145450:intron 50.0%
AAGTCCTACCATGCCTGGAA+TGG - chr7_4:22282417-22282436 None:intergenic 50.0%
CCTATAAGTCCTACCATGCC+TGG - chr7_4:22282422-22282441 None:intergenic 50.0%
CCAGGCATGGTAGGACTTAT+AGG + chr7_4:22282419-22282438 Msa1145450:intron 50.0%
TCGGATGAGGAGGGATTTGT+TGG + chr7_4:22282466-22282485 Msa1145450:intron 50.0%
GGATCTGAAGAGCTTTCAGC+TGG + chr7_4:22282771-22282790 Msa1145450:CDS 50.0%
GGTGTTTATGCGCTACTTGG+TGG + chr7_4:22282969-22282988 Msa1145450:CDS 50.0%
TCGAAATCCGTGTTCTGTGG+AGG + chr7_4:22283319-22283338 Msa1145450:CDS 50.0%
ATCCTCCAGCATCCTCTCAA+CGG - chr7_4:22283639-22283658 None:intergenic 50.0%
TGTTCACTCTCAGCAGGATC+GGG - chr7_4:22283734-22283753 None:intergenic 50.0%
! AGGGATATCTGAAGCAGGGT+GGG - chr7_4:22283789-22283808 None:intergenic 50.0%
! AAGGGATATCTGAAGCAGGG+TGG - chr7_4:22283790-22283809 None:intergenic 50.0%
CGGATTTCTTCAACTGGAGC+AGG - chr7_4:22283845-22283864 None:intergenic 50.0%
AAATCCGTCAACCAGTTGGC+AGG + chr7_4:22283858-22283877 Msa1145450:CDS 50.0%
CTCGTGCAGGCAAAATATGC+TGG + chr7_4:22284191-22284210 Msa1145450:intron 50.0%
GTTCTATGCTAAGACCCGAC+TGG + chr7_4:22284711-22284730 Msa1145450:intron 50.0%
! TTCACTTGTTGGGCCAGATC+TGG - chr7_4:22284794-22284813 None:intergenic 50.0%
CACACCCAAAACAATGGTGC+TGG - chr7_4:22284994-22285013 None:intergenic 50.0%
!!! GCACCATTGTTTTGGGTGTG+AGG + chr7_4:22284994-22285013 Msa1145450:intron 50.0%
TCCCCTCACACCCAAAACAA+TGG - chr7_4:22285000-22285019 None:intergenic 50.0%
GTACTCCCTCGAAAAACGGA+GGG + chr7_4:22285337-22285356 Msa1145450:intron 50.0%
!! TCCAACCCTCCGTTTTTCGA+GGG - chr7_4:22285345-22285364 None:intergenic 50.0%
TCGAAAAACGGAGGGTTGGA+CGG + chr7_4:22285345-22285364 Msa1145450:intron 50.0%
GACAAGGAAAAAGGGCAACC+TGG + chr7_4:22285414-22285433 Msa1145450:intron 50.0%
AAGGTCACGAGTTCAAGTCC+TGG - chr7_4:22285537-22285556 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr7_4:22285572-22285591 Msa1145450:intron 50.0%
TACCAGTTGCGCCAAGGTTA+AGG + chr7_4:22285578-22285597 Msa1145450:intron 50.0%
TTCCTTAACCTTGGCGCAAC+TGG - chr7_4:22285583-22285602 None:intergenic 50.0%
!!! CCCAATTGGTTTTGCTCCCA+AGG + chr7_4:22285617-22285636 Msa1145450:intron 50.0%
CTTTGTGAAGGGGAAACCCT+TGG - chr7_4:22285882-22285901 None:intergenic 50.0%
CCAAAGAAACCTGCTTCTCC+CGG - chr7_4:22286222-22286241 None:intergenic 50.0%
GCTACCCACACAAAATTCCC+TGG - chr7_4:22286368-22286387 None:intergenic 50.0%
TTTGTGTGGGTAGCTCTTCC+TGG + chr7_4:22286374-22286393 Msa1145450:CDS 50.0%
ATCCCTAAGCAGGCAGCAGT+AGG + chr7_4:22282114-22282133 Msa1145450:five_prime_UTR 55.0%
CTTCCTACTGCTGCCTGCTT+AGG - chr7_4:22282120-22282139 None:intergenic 55.0%
CAGGCAGCAGTAGGAAGATG+AGG + chr7_4:22282123-22282142 Msa1145450:five_prime_UTR 55.0%
CAGCAGTAGGAAGATGAGGG+AGG + chr7_4:22282127-22282146 Msa1145450:five_prime_UTR 55.0%
GCAGTAGGAAGATGAGGGAG+GGG + chr7_4:22282129-22282148 Msa1145450:five_prime_UTR 55.0%
!! CCTCACAAGCCGGTTTGTTG+GGG - chr7_4:22282632-22282651 None:intergenic 55.0%
!! GCCTCACAAGCCGGTTTGTT+GGG - chr7_4:22282633-22282652 None:intergenic 55.0%
GCAATCTTCGCCTCACAAGC+CGG - chr7_4:22282642-22282661 None:intergenic 55.0%
!! CTCTAAAGGTGGAGGTGCTG+AGG + chr7_4:22282905-22282924 Msa1145450:CDS 55.0%
TTATCTCGGGCTGTGCCTCT+CGG + chr7_4:22283095-22283114 Msa1145450:CDS 55.0%
TTGGTGTGGATGCCGTTGAG+AGG + chr7_4:22283624-22283643 Msa1145450:CDS 55.0%
ACTCTCAGCAGGATCGGGAT+GGG - chr7_4:22283729-22283748 None:intergenic 55.0%
GCATCCTGCCAACTGGTTGA+CGG - chr7_4:22283865-22283884 None:intergenic 55.0%
AACCAGTTGGCAGGATGCCT+GGG + chr7_4:22283867-22283886 Msa1145450:CDS 55.0%
AGAGGGGACTGCAATTCAGG+CGG - chr7_4:22284923-22284942 None:intergenic 55.0%
GCTAGAGGGGACTGCAATTC+AGG - chr7_4:22284926-22284945 None:intergenic 55.0%
AGCCACCTAAGTGCGGCATT+TGG + chr7_4:22284943-22284962 Msa1145450:intron 55.0%
GCCACCTAAGTGCGGCATTT+GGG + chr7_4:22284944-22284963 Msa1145450:intron 55.0%
ACCCAAATGCCGCACTTAGG+TGG - chr7_4:22284948-22284967 None:intergenic 55.0%
GCAACCCAAATGCCGCACTT+AGG - chr7_4:22284951-22284970 None:intergenic 55.0%
GGTACTCCCTCGAAAAACGG+AGG + chr7_4:22285336-22285355 Msa1145450:intron 55.0%
TCCCTCGAAAAACGGAGGGT+TGG + chr7_4:22285341-22285360 Msa1145450:intron 55.0%
!! GTCCAACCCTCCGTTTTTCG+AGG - chr7_4:22285346-22285365 None:intergenic 55.0%
TGTGAAGGGGAAACCCTTGG+AGG - chr7_4:22285879-22285898 None:intergenic 55.0%
GGTCCGAGGTTGAAAAGGTC+CGG + chr7_4:22286200-22286219 Msa1145450:intron 55.0%
GTCCGAGGTTGAAAAGGTCC+GGG + chr7_4:22286201-22286220 Msa1145450:CDS 55.0%
! CTCCCGGACCTTTTCAACCT+CGG - chr7_4:22286206-22286225 None:intergenic 55.0%
TGAAAAGGTCCGGGAGAAGC+AGG + chr7_4:22286210-22286229 Msa1145450:CDS 55.0%
CCGGGAGAAGCAGGTTTCTT+TGG + chr7_4:22286219-22286238 Msa1145450:CDS 55.0%
!! CCCCAACAAACCGGCTTGTG+AGG + chr7_4:22282629-22282648 Msa1145450:intron 60.0%
!! CGCCTCACAAGCCGGTTTGT+TGG - chr7_4:22282634-22282653 None:intergenic 60.0%
!! GGTGGAGGTGCTGAGGCTAT+TGG + chr7_4:22282912-22282931 Msa1145450:CDS 60.0%
GGATGCCGTTGAGAGGATGC+TGG + chr7_4:22283631-22283650 Msa1145450:CDS 60.0%
TGCCGTTGAGAGGATGCTGG+AGG + chr7_4:22283634-22283653 Msa1145450:CDS 60.0%
CTCTCAGCAGGATCGGGATG+GGG - chr7_4:22283728-22283747 None:intergenic 60.0%
CACTCTCAGCAGGATCGGGA+TGG - chr7_4:22283730-22283749 None:intergenic 60.0%
CAACCAGTTGGCAGGATGCC+TGG + chr7_4:22283866-22283885 Msa1145450:CDS 60.0%
ACCAGTTGGCAGGATGCCTG+GGG + chr7_4:22283868-22283887 Msa1145450:CDS 60.0%
CCGCACTTAGGTGGCTAGAG+GGG - chr7_4:22284939-22284958 None:intergenic 60.0%
CCCCTCTAGCCACCTAAGTG+CGG + chr7_4:22284936-22284955 Msa1145450:intron 60.0%
GCCGCACTTAGGTGGCTAGA+GGG - chr7_4:22284940-22284959 None:intergenic 60.0%
TGCCGCACTTAGGTGGCTAG+AGG - chr7_4:22284941-22284960 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr7_4:22285440-22285459 Msa1145450:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr7_4:22285441-22285460 Msa1145450:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr7_4:22285468-22285487 None:intergenic 60.0%
TCCCCAGGCATCCTGCCAAC+TGG - chr7_4:22283872-22283891 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+AGG - chr7_4:22285435-22285454 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr7_4:22285452-22285471 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr7_4:22285453-22285472 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr7_4:22285452-22285471 Msa1145450:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr7_4:22285453-22285472 Msa1145450:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr7_4:22285466-22285485 Msa1145450:intron 65.0%
GCTCCCGCATACGCAGGGTC+CGG + chr7_4:22285446-22285465 Msa1145450:intron 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr7_4:22285447-22285466 Msa1145450:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr7_4:22285451-22285470 Msa1145450:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 22282046 22286455 22282046 ID=Msa1145450;Name=Msa1145450
chr7_4 mRNA 22282046 22286455 22282046 ID=Msa1145450-mRNA-1;Parent=Msa1145450;Name=Msa1145450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=162|1|1|1|1|1|4|8|605
chr7_4 exon 22282046 22282370 22282046 ID=Msa1145450-mRNA-1:exon:5495;Parent=Msa1145450-mRNA-1
chr7_4 exon 22282769 22284090 22282769 ID=Msa1145450-mRNA-1:exon:5496;Parent=Msa1145450-mRNA-1
chr7_4 exon 22284200 22284285 22284200 ID=Msa1145450-mRNA-1:exon:5497;Parent=Msa1145450-mRNA-1
chr7_4 exon 22286201 22286455 22286201 ID=Msa1145450-mRNA-1:exon:5498;Parent=Msa1145450-mRNA-1
chr7_4 five_prime_UTR 22282046 22282207 22282046 ID=Msa1145450-mRNA-1:five_prime_utr;Parent=Msa1145450-mRNA-1
chr7_4 CDS 22282208 22282370 22282208 ID=Msa1145450-mRNA-1:cds;Parent=Msa1145450-mRNA-1
chr7_4 CDS 22282769 22284090 22282769 ID=Msa1145450-mRNA-1:cds;Parent=Msa1145450-mRNA-1
chr7_4 CDS 22284200 22284285 22284200 ID=Msa1145450-mRNA-1:cds;Parent=Msa1145450-mRNA-1
chr7_4 CDS 22286201 22286447 22286201 ID=Msa1145450-mRNA-1:cds;Parent=Msa1145450-mRNA-1
chr7_4 three_prime_UTR 22286448 22286455 22286448 ID=Msa1145450-mRNA-1:three_prime_utr;Parent=Msa1145450-mRNA-1
Gene Sequence

>Msa1145450

ATGCAGAGATCACGTAAAGCTCGCATGGAATTGGAAAGAAGACCTTCTCTTCTTCATAACCCCATTTCTTCCTCTGCCCAAAGTTTCCATTTTTATCAACTTTCTCTGCTTTTTGATTTGTGGGTTTTACTCATTCTCTTCAGCTTATGGGTCACTCACACAGATGGATCTGAAGAGCTTTCAGCTGGATTATCAAATTGGAATCAAGTTAACCACGGATTTTGTGAAATATCTGATACTGTTGATAAAAATTGTATTGAAGAAAGTGATGCTTGCGTTCCGTCAGAAGCTTTATTATACTCTAAAGGTGGAGGTGCTGAGGCTATTGGTTTAGTTGGTGAGTCACTCACTGATAGAGAAAGTGGTGTTTATGCGCTACTTGGTGGTTGTAATAAAGAACATACTGATTCGGCCAATAAAGAGGAGCATGTAGTTGAGAGTTCTGAATCTGCTGTCAAACATGAAAATGATGTCAAAAAATCTGATCTCTTATCTCGGGCTGTGCCTCTCGGTCTTGATGAGTTCAAGAGCAGGGCGATCAGTTCTAAAGTTAAGTCAGGCACTGATCAATCTGGAAGTGTAATACATAGATTGGAGCCTGGAGGTGCAGAATACAATTATGCTTCGGCATCAAAGGGAGCCAAAGTTTTAGGTTCCAATAAAGAAGGGAAAGGTGCCTCTAATATCTTAAGCAGGGATAAAGACAAGTATCTTCGAAATCCGTGTTCTGTGGAGGAGAAATTTGTCATCATAGAACTTTCAGAAGAAACCTTGGTAGATACTGTAGAAATAGCTAATTTTGAACATCACTCTTCCAATTTGAAAGACTTTGAAATCCATGGAAGTCTGAACTTTCCAACAGATGCTTGGGTTTTCCTTGGGAATTTTACTGCCTCAAATGTGAGGCATGCTCAAAGGTTTGTTCTTAAAGAGCCAAAATGGGTAAGATACCTAAAGTTGAATCTTCAAAGCCACTATGGTTCCGAATTTTATTGCACACTAAGTGTTGTTGAAGTTTTTGGTGTGGATGCCGTTGAGAGGATGCTGGAGGATTTAATTAGTACTCAAGACAATCTATTTGCATCTGGAGAAGGCAATGATGATAAGAAGATAGTATCACCCCATCCCGATCCTGCTGAGAGTGAACATGTTCAGCAAAACACTTTTGAGGGGATGAATTCCCACCCTGCTTCAGATATCCCTTCTTCCAATCATGAAACGGCAAACAGTAATGTTCCTGCTCCAGTTGAAGAAATCCGTCAACCAGTTGGCAGGATGCCTGGGGATACTGTTCTCAAGATTCTAATGCAGAAAGTCCGTACTCTAGACCTAAATTTAATTGTTTTGGAGCGGTATATGGAAGACCTAAACTCCAGATATGTCAATATTTTCAAAGAGTACAGCAAAGACATAGAAGAAACAGATGTAGTTCTTCAGAAGATTAAAGAAGGCATTAAGAATCTCATTGACCAGCAGGATGTTATAGCAAAATATGCTGGTGATCTCAATTCTTGGAAGTCTCAAGTTTCTTTGCAGTTGGATCATATACTCCAGGACAATGCTGTTTTGAGGTCCGAGGTTGAAAAGGTCCGGGAGAAGCAGGTTTCTTTGGAAAACAAGGGTGTGATTGTGTTTCTATTATGTTGTATTTTTTCATTGATTGCTTTGTTACGGCTATCTTTGGATATGGCTAAGAATGTTTATAGAGCACTTAGTGTTGATAGAACAGTTGACTCCAGGGAATTTTGTGTGGGTAGCTCTTCCTGGTTTCTTCTATTATTGAGTTGTATCATTATCATTTTCATATTAACCTTTTGA

Protein sequence

>Msa1145450

MQRSRKARMELERRPSLLHNPISSSAQSFHFYQLSLLFDLWVLLILFSLWVTHTDGSEELSAGLSNWNQVNHGFCEISDTVDKNCIEESDACVPSEALLYSKGGGAEAIGLVGESLTDRESGVYALLGGCNKEHTDSANKEEHVVESSESAVKHENDVKKSDLLSRAVPLGLDEFKSRAISSKVKSGTDQSGSVIHRLEPGGAEYNYASASKGAKVLGSNKEGKGASNILSRDKDKYLRNPCSVEEKFVIIELSEETLVDTVEIANFEHHSSNLKDFEIHGSLNFPTDAWVFLGNFTASNVRHAQRFVLKEPKWVRYLKLNLQSHYGSEFYCTLSVVEVFGVDAVERMLEDLISTQDNLFASGEGNDDKKIVSPHPDPAESEHVQQNTFEGMNSHPASDIPSSNHETANSNVPAPVEEIRQPVGRMPGDTVLKILMQKVRTLDLNLIVLERYMEDLNSRYVNIFKEYSKDIEETDVVLQKIKEGIKNLIDQQDVIAKYAGDLNSWKSQVSLQLDHILQDNAVLRSEVEKVREKQVSLENKGVIVFLLCCIFSLIALLRLSLDMAKNVYRALSVDRTVDSREFCVGSSSWFLLLLSCIIIIFILTF*