Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375200 | KEH42453.1 | 91.433 | 642 | 32 | 4 | 1 | 627 | 1 | 634 | 0.0 | 1175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375200 | sp|F4I8I0|SUN4_ARATH | 43.929 | 560 | 286 | 9 | 23 | 564 | 19 | 568 | 1.85e-144 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375200 | A0A072VM17 | 91.433 | 642 | 32 | 4 | 1 | 627 | 1 | 634 | 0.0 | 1175 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0167710 | Msa1375200 | 0.911712 | 4.456108e-83 | -8.615850e-47 |
| Msa1145450 | Msa1375200 | 0.907171 | 6.761271e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375200 | MtrunA17_Chr1g0183121 | 94.737 | 589 | 22 | 3 | 1 | 588 | 1 | 581 | 0.0 | 1126 |
| Msa1375200 | MtrunA17_Chr4g0013761 | 81.525 | 590 | 101 | 4 | 1 | 585 | 1 | 587 | 0.0 | 951 |
| Msa1375200 | MtrunA17_Chr3g0078011 | 60.368 | 598 | 202 | 13 | 1 | 588 | 1 | 573 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375200 | AT1G71360.1 | 43.929 | 560 | 286 | 9 | 23 | 564 | 19 | 568 | 1.88e-145 | 435 |
| Msa1375200 | AT1G71360.2 | 44.424 | 556 | 289 | 8 | 23 | 564 | 45 | 594 | 1.10e-144 | 434 |
| Msa1375200 | AT1G22882.1 | 46.828 | 536 | 224 | 10 | 75 | 564 | 112 | 632 | 8.15e-140 | 422 |
| Msa1375200 | AT4G23950.1 | 43.733 | 375 | 174 | 7 | 196 | 559 | 170 | 518 | 7.30e-91 | 292 |
| Msa1375200 | AT4G23950.2 | 43.617 | 376 | 174 | 8 | 196 | 559 | 170 | 519 | 4.03e-89 | 288 |
Find 142 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTCATTCTCTTCAGCTTA+TGG | 0.145583 | tig0019645:+93614 | Msa1375200:CDS |
| TTTAGGTATCTTACCCATTT+TGG | 0.166001 | tig0019645:-94818 | None:intergenic |
| GGCACCTTTCCCTTCTTTAT+TGG | 0.187268 | tig0019645:-94540 | None:intergenic |
| AGACCTAAATTTAATTGTTT+TGG | 0.201241 | tig0019645:+95210 | Msa1375200:CDS |
| CCGGGAGAAGCAGGTTTCTT+TGG | 0.240817 | tig0019645:+97499 | Msa1375200:CDS |
| AACTACATGCTCCTCTTTAT+TGG | 0.244993 | tig0019645:-94297 | None:intergenic |
| TTTCAGCTGGATTATCAAAT+TGG | 0.258814 | tig0019645:+94063 | Msa1375200:CDS |
| GCTCCAAAACAATTAAATTT+AGG | 0.263875 | tig0019645:-95213 | None:intergenic |
| TTGTTCTTAAAGAGCCAAAA+TGG | 0.265261 | tig0019645:+94804 | Msa1375200:CDS |
| TTTGTGTGGGTAGCTCTTCC+TGG | 0.271181 | tig0019645:+97654 | Msa1375200:CDS |
| GGCTTTGAAGATTCAACTTT+AGG | 0.274884 | tig0019645:-94835 | None:intergenic |
| TTTATTGGAACCTAAAACTT+TGG | 0.279402 | tig0019645:-94525 | None:intergenic |
| ATCCCTGCTTAAGATATTAG+AGG | 0.285746 | tig0019645:-94561 | None:intergenic |
| CTTCCTACTGCTGCCTGCTT+AGG | 0.286050 | tig0019645:-93396 | None:intergenic |
| TGCTTTGTTACGGCTATCTT+TGG | 0.291860 | tig0019645:+97571 | Msa1375200:CDS |
| TTTGAAAATATTGACATATC+TGG | 0.300686 | tig0019645:-95257 | None:intergenic |
| ACTCATTCTCTTCAGCTTAT+GGG | 0.310092 | tig0019645:+93615 | Msa1375200:CDS |
| GATTTCAAAGTCTTTCAAAT+TGG | 0.322234 | tig0019645:-94699 | None:intergenic |
| GTTACGGCTATCTTTGGATA+TGG | 0.325038 | tig0019645:+97577 | Msa1375200:CDS |
| TATTGACATATCTGGAGTTT+AGG | 0.333964 | tig0019645:-95249 | None:intergenic |
| CAACCAGTTGGCAGGATGCC+TGG | 0.353646 | tig0019645:+95145 | Msa1375200:CDS |
| ATGCTGGTGATCTCAATTCT+TGG | 0.382007 | tig0019645:+95486 | Msa1375200:CDS |
| TTTCATTGATTGCTTTGTTA+CGG | 0.388387 | tig0019645:+97561 | Msa1375200:CDS |
| ACTGTTTGCCGTTTCATGAT+TGG | 0.392357 | tig0019645:-95092 | None:intergenic |
| ACGTAAAGCTCGCATGGAAT+TGG | 0.396219 | tig0019645:+93498 | Msa1375200:CDS |
| GAACTTTCCAACAGATGCTT+GGG | 0.398646 | tig0019645:+94733 | Msa1375200:CDS |
| TTCCTACTGCTGCCTGCTTA+GGG | 0.404814 | tig0019645:-93395 | None:intergenic |
| ACTTAGTGTGCAATAAAATT+CGG | 0.412768 | tig0019645:-94867 | None:intergenic |
| TGGAAGTGTAATACATAGAT+TGG | 0.414499 | tig0019645:+94457 | Msa1375200:CDS |
| ATATTGATCTAAAATCTTCA+AGG | 0.419991 | tig0019645:+97793 | Msa1375200:CDS |
| TGAACTTTCCAACAGATGCT+TGG | 0.423228 | tig0019645:+94732 | Msa1375200:CDS |
| ACTTTGGGCAGAGGAAGAAA+TGG | 0.424463 | tig0019645:-93548 | None:intergenic |
| GGTGGAGGTGCTGAGGCTAT+TGG | 0.424475 | tig0019645:+94191 | Msa1375200:CDS |
| GTCTCAAGTTTCTTTGCAGT+TGG | 0.424631 | tig0019645:+95511 | Msa1375200:CDS |
| CAAGACAATCTATTTGCATC+TGG | 0.428687 | tig0019645:+94950 | Msa1375200:CDS |
| GGTTGACGGATTTCTTCAAC+TGG | 0.428942 | tig0019645:-95127 | None:intergenic |
| AACCAGTTGGCAGGATGCCT+GGG | 0.431096 | tig0019645:+95146 | Msa1375200:CDS |
| CGGATTTCTTCAACTGGAGC+AGG | 0.434396 | tig0019645:-95121 | None:intergenic |
| TTGAATCTTCAAAGCCACTA+TGG | 0.437657 | tig0019645:+94842 | Msa1375200:CDS |
| GCTGAGGCTATTGGTTTAGT+TGG | 0.437987 | tig0019645:+94200 | Msa1375200:CDS |
| CCAAAGAAACCTGCTTCTCC+CGG | 0.438181 | tig0019645:-97499 | None:intergenic |
| TTGAAAGACTTTGAAATCCA+TGG | 0.438972 | tig0019645:+94704 | Msa1375200:CDS |
| CTTTGGGCAGAGGAAGAAAT+GGG | 0.450705 | tig0019645:-93547 | None:intergenic |
| GAAGCTTTATTATACTCTAA+AGG | 0.451944 | tig0019645:+94170 | Msa1375200:CDS |
| CAATTATGCTTCGGCATCAA+AGG | 0.453952 | tig0019645:+94499 | Msa1375200:CDS |
| GGTCCGAGGTTGAAAAGGTC+CGG | 0.457513 | tig0019645:+97480 | Msa1375200:intron |
| TTGAGCATGCCTCACATTTG+AGG | 0.457552 | tig0019645:-94777 | None:intergenic |
| GCAGTAGGAAGACGAGGGAG+GGG | 0.465295 | tig0019645:+93408 | Msa1375200:five_prime_UTR |
| GTGCCTCTAATATCTTAAGC+AGG | 0.467275 | tig0019645:+94558 | Msa1375200:CDS |
| GCCGTTTCATGATTGGAAGA+AGG | 0.469531 | tig0019645:-95085 | None:intergenic |
| ACCTCAAAACAGCATTGTCC+TGG | 0.471683 | tig0019645:-95544 | None:intergenic |
| TAATAAAGAACATACTGATT+CGG | 0.472142 | tig0019645:+94274 | Msa1375200:CDS |
| TCCCCAGGCATCCTGCCAAC+TGG | 0.474677 | tig0019645:-95148 | None:intergenic |
| TGAAAAGGTCCGGGAGAAGC+AGG | 0.475416 | tig0019645:+97490 | Msa1375200:CDS |
| CCGTTTCATGATTGGAAGAA+GGG | 0.475600 | tig0019645:-95084 | None:intergenic |
| ATCAGTTCTAAAGTTAAGTC+AGG | 0.481166 | tig0019645:+94422 | Msa1375200:CDS |
| ACTCTCAGCAGGATCGGGAT+GGG | 0.483817 | tig0019645:-95005 | None:intergenic |
| TTATCTCGGGCTGTGCCTCT+CGG | 0.487582 | tig0019645:+94374 | Msa1375200:CDS |
| GGATCTGAAGAGCTTTCAGC+TGG | 0.490377 | tig0019645:+94050 | Msa1375200:CDS |
| TGTTCACTCTCAGCAGGATC+GGG | 0.492452 | tig0019645:-95010 | None:intergenic |
| TAAGAATCTCATTGACCAGC+AGG | 0.494809 | tig0019645:+95339 | Msa1375200:CDS |
| AAGTCAGGCACTGATCAATC+TGG | 0.498645 | tig0019645:+94437 | Msa1375200:CDS |
| CACTCTCAGCAGGATCGGGA+TGG | 0.499067 | tig0019645:-95006 | None:intergenic |
| AAAATCTGATCTCTTATCTC+GGG | 0.500552 | tig0019645:+94361 | Msa1375200:CDS |
| CCCTTCTTCCAATCATGAAA+CGG | 0.500904 | tig0019645:+95084 | Msa1375200:CDS |
| TGTTCTTAAAGAGCCAAAAT+GGG | 0.502493 | tig0019645:+94805 | Msa1375200:CDS |
| GTTCTTCAGAAGATTAAAGA+AGG | 0.507702 | tig0019645:+95313 | Msa1375200:CDS |
| ATTCAGGTCCGAGGTTGAAA+AGG | 0.511149 | tig0019645:+97475 | Msa1375200:intron |
| AGCAGTAGGAAGACGAGGGA+GGG | 0.515420 | tig0019645:+93407 | Msa1375200:five_prime_UTR |
| GCAGGTTTCTTTGGAAAACA+AGG | 0.518116 | tig0019645:+97508 | Msa1375200:CDS |
| TTGATAGAACAGTTGACTCC+AGG | 0.519777 | tig0019645:+97627 | Msa1375200:CDS |
| AGTGGTGTTTATGCGCTACT+TGG | 0.521605 | tig0019645:+94245 | Msa1375200:CDS |
| AAATCCGTCAACCAGTTGGC+AGG | 0.521805 | tig0019645:+95137 | Msa1375200:CDS |
| TACTGATTCGGCCAATAAAG+AGG | 0.522006 | tig0019645:+94286 | Msa1375200:CDS |
| CTCTCAGCAGGATCGGGATG+GGG | 0.523175 | tig0019645:-95004 | None:intergenic |
| TTGGAAAGTTCAGACTTCCA+TGG | 0.523368 | tig0019645:-94721 | None:intergenic |
| TGCAGAATACAATTATGCTT+CGG | 0.524753 | tig0019645:+94490 | Msa1375200:CDS |
| CTTGTCATTCATCCCTAAGC+AGG | 0.528045 | tig0019645:+93383 | Msa1375200:five_prime_UTR |
| GCATCCTGCCAACTGGTTGA+CGG | 0.530318 | tig0019645:-95141 | None:intergenic |
| GAAGAAGGGATATCTGAAGC+AGG | 0.532449 | tig0019645:-95070 | None:intergenic |
| GTCTTGATGAGTTCAAGAGC+AGG | 0.532869 | tig0019645:+94396 | Msa1375200:CDS |
| TGAACATGTTCACTCTCAGC+AGG | 0.537283 | tig0019645:-95016 | None:intergenic |
| AGGAAAACCCAAGCATCTGT+TGG | 0.540357 | tig0019645:-94740 | None:intergenic |
| ATGTTCACTCTCAGCAGGAT+CGG | 0.540435 | tig0019645:-95011 | None:intergenic |
| TAATTGTATTCTGCACCTCC+AGG | 0.543624 | tig0019645:-94482 | None:intergenic |
| GTCCGAGGTTGAAAAGGTCC+GGG | 0.545030 | tig0019645:+97481 | Msa1375200:CDS |
| AATAAAATTCGGAACCATAG+TGG | 0.546010 | tig0019645:-94856 | None:intergenic |
| TAGAGTGGATGCAATAACTA+AGG | 0.546995 | tig0019645:+97833 | Msa1375200:CDS |
| AATTATGCTTCGGCATCAAA+GGG | 0.548259 | tig0019645:+94500 | Msa1375200:CDS |
| GCAGTTGGATCATATACTCC+AGG | 0.548439 | tig0019645:+95526 | Msa1375200:CDS |
| CAGCAGTAGGAAGACGAGGG+AGG | 0.548807 | tig0019645:+93406 | Msa1375200:five_prime_UTR |
| GGTGTTTATGCGCTACTTGG+TGG | 0.549516 | tig0019645:+94248 | Msa1375200:CDS |
| CAGGCAGCAGTAGGAAGACG+AGG | 0.549715 | tig0019645:+93402 | Msa1375200:five_prime_UTR |
| TTATTATACTCTAAAGGTGG+AGG | 0.555825 | tig0019645:+94176 | Msa1375200:CDS |
| CTCTAAAGGTGGAGGTGCTG+AGG | 0.557047 | tig0019645:+94184 | Msa1375200:CDS |
| AATCTATTTGCATCTGGAGA+AGG | 0.558454 | tig0019645:+94956 | Msa1375200:CDS |
| TCACTCACTGATAGAGAAAG+TGG | 0.559066 | tig0019645:+94227 | Msa1375200:CDS |
| AGAACTTTCAGAAGAAACCT+TGG | 0.560587 | tig0019645:+94637 | Msa1375200:CDS |
| GAGATCACGTAAAGCTCGCA+TGG | 0.568513 | tig0019645:+93492 | Msa1375200:CDS |
| CTCGTGCAGGCAAAATATGC+TGG | 0.571157 | tig0019645:+95470 | Msa1375200:intron |
| CAGTTCGACATCACTTAGAG+TGG | 0.572759 | tig0019645:+97818 | Msa1375200:CDS |
| CAAATGTGAGGCATGCTCAA+AGG | 0.572982 | tig0019645:+94780 | Msa1375200:CDS |
| ATGGGGTTATGAAGAAGAGA+AGG | 0.573199 | tig0019645:-93529 | None:intergenic |
| TTCTTAATAATTCAGGTCCG+AGG | 0.575561 | tig0019645:+97466 | Msa1375200:intron |
| TTAAATTTAGGTCTAGAGTA+CGG | 0.576670 | tig0019645:-95201 | None:intergenic |
| AGCTTATGGGTCACTCACAC+AGG | 0.578454 | tig0019645:+93628 | Msa1375200:CDS |
| AGGGATATCTGAAGCAGGGT+GGG | 0.581632 | tig0019645:-95065 | None:intergenic |
| GGTTCCAATAAAGAAGGGAA+AGG | 0.581843 | tig0019645:+94536 | Msa1375200:CDS |
| ATCCTCCAGCATCCTCTCAA+CGG | 0.584718 | tig0019645:-94915 | None:intergenic |
| AATTTCTCCTCCACAGAACA+CGG | 0.585511 | tig0019645:-94605 | None:intergenic |
| TGATAGAACAGTTGACTCCA+GGG | 0.585751 | tig0019645:+97628 | Msa1375200:CDS |
| GTAATACATAGATTGGAGCC+TGG | 0.586563 | tig0019645:+94464 | Msa1375200:CDS |
| GCTACCCACACAAAATTCCC+TGG | 0.586908 | tig0019645:-97645 | None:intergenic |
| TACGCACTATAACATCCTGC+TGG | 0.589181 | tig0019645:-95354 | None:intergenic |
| CAGGTTTCTTTGGAAAACAA+GGG | 0.589978 | tig0019645:+97509 | Msa1375200:CDS |
| ATCTTGAGAACAGTATCCCC+AGG | 0.590052 | tig0019645:-95163 | None:intergenic |
| ATCCCTAAGCAGGCAGCAGT+AGG | 0.595610 | tig0019645:+93393 | Msa1375200:five_prime_UTR |
| TGCCTCTAATATCTTAAGCA+GGG | 0.597312 | tig0019645:+94559 | Msa1375200:CDS |
| GAGTATAATAAAGCTTCTGA+CGG | 0.598371 | tig0019645:-94164 | None:intergenic |
| GCTTTATTATACTCTAAAGG+TGG | 0.599801 | tig0019645:+94173 | Msa1375200:CDS |
| TTGAGGCAGTAAAATTCCCA+AGG | 0.599930 | tig0019645:-94760 | None:intergenic |
| GGATGCCGTTGAGAGGATGC+TGG | 0.600025 | tig0019645:+94910 | Msa1375200:CDS |
| TCTTCGAAATCCGTGTTCTG+TGG | 0.607278 | tig0019645:+94595 | Msa1375200:CDS |
| AAAATGGAAACTTTGGGCAG+AGG | 0.607547 | tig0019645:-93557 | None:intergenic |
| CAGATATTTCACAAAATCCG+TGG | 0.609098 | tig0019645:-94097 | None:intergenic |
| TTGGTGTGGATGCCGTTGAG+AGG | 0.612570 | tig0019645:+94903 | Msa1375200:CDS |
| TCGAAATCCGTGTTCTGTGG+AGG | 0.612846 | tig0019645:+94598 | Msa1375200:CDS |
| GAAGAAATCCGTCAACCAGT+TGG | 0.616669 | tig0019645:+95133 | Msa1375200:CDS |
| TCTTGATGAGTTCAAGAGCA+GGG | 0.640578 | tig0019645:+94397 | Msa1375200:CDS |
| AGTGGATGCAATAACTAAGG+TGG | 0.644884 | tig0019645:+97836 | Msa1375200:CDS |
| TATTTCTACAGTATCTACCA+AGG | 0.649127 | tig0019645:-94654 | None:intergenic |
| ACCAGTTGGCAGGATGCCTG+GGG | 0.649182 | tig0019645:+95147 | Msa1375200:CDS |
| AGGCAGCAGTAGGAAGACGA+GGG | 0.651490 | tig0019645:+93403 | Msa1375200:five_prime_UTR |
| AATTGGAATCAAGTTAACCA+CGG | 0.654455 | tig0019645:+94080 | Msa1375200:CDS |
| GAGTGCGTTGACACTTACGA+TGG | 0.655353 | tig0019645:-93349 | None:intergenic |
| AAGAAGGGATATCTGAAGCA+GGG | 0.657621 | tig0019645:-95069 | None:intergenic |
| AAGGGATATCTGAAGCAGGG+TGG | 0.666617 | tig0019645:-95066 | None:intergenic |
| ATACATAGATTGGAGCCTGG+AGG | 0.724979 | tig0019645:+94467 | Msa1375200:CDS |
| TGCCGTTGAGAGGATGCTGG+AGG | 0.725275 | tig0019645:+94913 | Msa1375200:CDS |
| TTGAACTCATCAAGACCGAG+AGG | 0.728710 | tig0019645:-94389 | None:intergenic |
| ATTATGCAGAAGTCAAGTCG+CGG | 0.736164 | tig0019645:-93455 | None:intergenic |
| TTTGGGCAGAGGAAGAAATG+GGG | 0.747784 | tig0019645:-93546 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATATAATAATGGAAA+TGG | - | tig0019645:95882-95901 | None:intergenic | 10.0% |
| !! | TAAGGAATTAAATATAATAA+TGG | - | tig0019645:95888-95907 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTCTTAATAATTC+AGG | + | tig0019645:97459-97478 | Msa1375200:intron | 10.0% |
| !!! | TTTATTATTTTGTATGTAGA+TGG | + | tig0019645:94029-94048 | Msa1375200:intron | 15.0% |
| !!! | AAACCAAAATTTCAATTTTT+AGG | + | tig0019645:96451-96470 | Msa1375200:intron | 15.0% |
| !!! | TTTTATTGAAATAATGAGAA+AGG | + | tig0019645:97106-97125 | Msa1375200:intron | 15.0% |
| !!! | TTCTATTTCTTAATAAACTA+TGG | - | tig0019645:97375-97394 | None:intergenic | 15.0% |
| !!! | TAATAAAGAACATACTGATT+CGG | + | tig0019645:94274-94293 | Msa1375200:CDS | 20.0% |
| !!! | AGACCTAAATTTAATTGTTT+TGG | + | tig0019645:95210-95229 | Msa1375200:CDS | 20.0% |
| !!! | TAAATTTAATTGTTTTGGAG+CGG | + | tig0019645:95215-95234 | Msa1375200:CDS | 20.0% |
| !! | TTTGAAAATATTGACATATC+TGG | - | tig0019645:95260-95279 | None:intergenic | 20.0% |
| !! | TACCTAGTGTAAATATTAAT+TGG | + | tig0019645:95635-95654 | Msa1375200:intron | 20.0% |
| !! | ACATGTGAATAAACTATATT+GGG | - | tig0019645:95675-95694 | None:intergenic | 20.0% |
| !! | TACATGTGAATAAACTATAT+TGG | - | tig0019645:95676-95695 | None:intergenic | 20.0% |
| !! | TATTCACATGTATTAGAATA+AGG | + | tig0019645:95684-95703 | Msa1375200:intron | 20.0% |
| !!! | CATCCTAAAAATTGAAATTT+TGG | - | tig0019645:96457-96476 | None:intergenic | 20.0% |
| !!! | CAAAATTTCAATTTTTAGGA+TGG | + | tig0019645:96455-96474 | Msa1375200:intron | 20.0% |
| !! | ATTGTAATTTCTGTAACTTA+TGG | - | tig0019645:96519-96538 | None:intergenic | 20.0% |
| !! | TTAAAAATTGTGTGATTCAA+AGG | + | tig0019645:96580-96599 | Msa1375200:intron | 20.0% |
| !! | ATCATAAATGATCTATCAAT+CGG | - | tig0019645:96652-96671 | None:intergenic | 20.0% |
| !! | ATTGATAGATCATTTATGAT+TGG | + | tig0019645:96652-96671 | Msa1375200:intron | 20.0% |
| !! | TTGATAGATCATTTATGATT+GGG | + | tig0019645:96653-96672 | Msa1375200:intron | 20.0% |
| !! | TTGTAAATAGATATGTGTTA+GGG | - | tig0019645:96993-97012 | None:intergenic | 20.0% |
| !! | TATTTCTTAATAAACTATGG+TGG | - | tig0019645:97372-97391 | None:intergenic | 20.0% |
| !! | ATAACAAGATATCTCAAAAA+TGG | - | tig0019645:97735-97754 | None:intergenic | 20.0% |
| !!! | ATATTGATCTAAAATCTTCA+AGG | + | tig0019645:97793-97812 | Msa1375200:CDS | 20.0% |
| ! | TTGGTAAAAATGGAAACTTT+GGG | - | tig0019645:93566-93585 | None:intergenic | 25.0% |
| ! | AACAAATTAACCACTAACAT+CGG | - | tig0019645:93724-93743 | None:intergenic | 25.0% |
| !! | CACAAAGTGTTATCAAATAA+AGG | + | tig0019645:93825-93844 | Msa1375200:intron | 25.0% |
| ! | TTATCAAATAAAGGCTATAG+TGG | + | tig0019645:93834-93853 | Msa1375200:intron | 25.0% |
| ! | AAAAATAATTGGATGACAGA+TGG | - | tig0019645:93969-93988 | None:intergenic | 25.0% |
| ! | TGCAACGAAGTAAAAATAAT+TGG | - | tig0019645:93980-93999 | None:intergenic | 25.0% |
| !!! | GAAGCTTTATTATACTCTAA+AGG | + | tig0019645:94170-94189 | Msa1375200:CDS | 25.0% |
| ! | AAAAATCTGATCTCTTATCT+CGG | + | tig0019645:94360-94379 | Msa1375200:CDS | 25.0% |
| ! | TTTATTGGAACCTAAAACTT+TGG | - | tig0019645:94528-94547 | None:intergenic | 25.0% |
| !!! | TTTTAGGTTCCAATAAAGAA+GGG | + | tig0019645:94531-94550 | Msa1375200:CDS | 25.0% |
| ! | GATTTCAAAGTCTTTCAAAT+TGG | - | tig0019645:94702-94721 | None:intergenic | 25.0% |
| ! | ACTTAGTGTGCAATAAAATT+CGG | - | tig0019645:94870-94889 | None:intergenic | 25.0% |
| !! | TTAAATTTAGGTCTAGAGTA+CGG | - | tig0019645:95204-95223 | None:intergenic | 25.0% |
| ! | GCTCCAAAACAATTAAATTT+AGG | - | tig0019645:95216-95235 | None:intergenic | 25.0% |
| ! | ATTTCCAAAATGAATAGAGT+AGG | - | tig0019645:95441-95460 | None:intergenic | 25.0% |
| ! | ACATGTATTAGAATAAGGAT+GGG | + | tig0019645:95689-95708 | Msa1375200:intron | 25.0% |
| ! | AGTTTACTGATAGATGAATA+AGG | - | tig0019645:95906-95925 | None:intergenic | 25.0% |
| ! | ATTCATCTATCAGTAAACTT+CGG | + | tig0019645:95907-95926 | Msa1375200:intron | 25.0% |
| ! | AAACTATATAAGCACAACTT+AGG | - | tig0019645:96329-96348 | None:intergenic | 25.0% |
| ! | TAAGTTGTGCTTATATAGTT+TGG | + | tig0019645:96328-96347 | Msa1375200:intron | 25.0% |
| ! | AAGTTGTGCTTATATAGTTT+GGG | + | tig0019645:96329-96348 | Msa1375200:intron | 25.0% |
| !!! | ACTTTACAAGTTGGTTTTAT+AGG | + | tig0019645:96360-96379 | Msa1375200:intron | 25.0% |
| !! | TGGATCTTAAAATTTGAGTT+GGG | - | tig0019645:96396-96415 | None:intergenic | 25.0% |
| !! | AAATTTCTGAAAGAAAGACA+AGG | + | tig0019645:96678-96697 | Msa1375200:intron | 25.0% |
| ! | GTTGTAAATAGATATGTGTT+AGG | - | tig0019645:96994-97013 | None:intergenic | 25.0% |
| ! | TTACTTTGTAGTCATTTGTT+AGG | + | tig0019645:97052-97071 | Msa1375200:intron | 25.0% |
| !! | ACTCTTTTCAATTCAATTCT+GGG | - | tig0019645:97080-97099 | None:intergenic | 25.0% |
| ! | AATAAACCTCCTATTTATAC+AGG | + | tig0019645:97236-97255 | Msa1375200:intron | 25.0% |
| ! | TTGACATTATTTACTGTTTC+TGG | + | tig0019645:97295-97314 | Msa1375200:intron | 25.0% |
| ! | AATAAACTATGGTGGTAAAA+AGG | - | tig0019645:97364-97383 | None:intergenic | 25.0% |
| ! | CTACGAACTATATAGTTATT+TGG | + | tig0019645:97429-97448 | Msa1375200:intron | 25.0% |
| !! | TTTCATTGATTGCTTTGTTA+CGG | + | tig0019645:97561-97580 | Msa1375200:CDS | 25.0% |
| ! | GTTGGTAAAAATGGAAACTT+TGG | - | tig0019645:93567-93586 | None:intergenic | 30.0% |
| AATCAAAAAGCAGAGAAAGT+TGG | - | tig0019645:93585-93604 | None:intergenic | 30.0% | |
| !!! | TTTCTCTGCTTTTTGATTTG+TGG | + | tig0019645:93587-93606 | Msa1375200:CDS | 30.0% |
| !!! | TTCTCTGCTTTTTGATTTGT+GGG | + | tig0019645:93588-93607 | Msa1375200:CDS | 30.0% |
| AGAAACAAAACAAGAAAGGA+TGG | - | tig0019645:93671-93690 | None:intergenic | 30.0% | |
| GGAAAGAAACAAAACAAGAA+AGG | - | tig0019645:93675-93694 | None:intergenic | 30.0% | |
| !! | GTTAGTGGTTAATTTGTTCT+CGG | + | tig0019645:93726-93745 | Msa1375200:intron | 30.0% |
| !! | ATAGTCTTATACTTTGTGGT+TGG | + | tig0019645:93874-93893 | Msa1375200:intron | 30.0% |
| !! | TAGTCTTATACTTTGTGGTT+GGG | + | tig0019645:93875-93894 | Msa1375200:intron | 30.0% |
| GAGCAAGTATTTATAAGTGA+GGG | - | tig0019645:93943-93962 | None:intergenic | 30.0% | |
| TGAGCAAGTATTTATAAGTG+AGG | - | tig0019645:93944-93963 | None:intergenic | 30.0% | |
| CATACGTCTCATAATCTTAT+TGG | + | tig0019645:94002-94021 | Msa1375200:intron | 30.0% | |
| TTTCAGCTGGATTATCAAAT+TGG | + | tig0019645:94063-94082 | Msa1375200:CDS | 30.0% | |
| AATTGGAATCAAGTTAACCA+CGG | + | tig0019645:94080-94099 | Msa1375200:CDS | 30.0% | |
| GAGTATAATAAAGCTTCTGA+CGG | - | tig0019645:94167-94186 | None:intergenic | 30.0% | |
| ! | GCTTTATTATACTCTAAAGG+TGG | + | tig0019645:94173-94192 | Msa1375200:CDS | 30.0% |
| ! | TTATTATACTCTAAAGGTGG+AGG | + | tig0019645:94176-94195 | Msa1375200:CDS | 30.0% |
| AAAATCTGATCTCTTATCTC+GGG | + | tig0019645:94361-94380 | Msa1375200:CDS | 30.0% | |
| !! | ATCAGTTCTAAAGTTAAGTC+AGG | + | tig0019645:94422-94441 | Msa1375200:CDS | 30.0% |
| ! | TGGAAGTGTAATACATAGAT+TGG | + | tig0019645:94457-94476 | Msa1375200:CDS | 30.0% |
| TGCAGAATACAATTATGCTT+CGG | + | tig0019645:94490-94509 | Msa1375200:CDS | 30.0% | |
| !!! | GTTTTAGGTTCCAATAAAGA+AGG | + | tig0019645:94530-94549 | Msa1375200:CDS | 30.0% |
| ! | TATTTCTACAGTATCTACCA+AGG | - | tig0019645:94657-94676 | None:intergenic | 30.0% |
| !! | TTGAAAGACTTTGAAATCCA+TGG | + | tig0019645:94704-94723 | Msa1375200:CDS | 30.0% |
| TTGTTCTTAAAGAGCCAAAA+TGG | + | tig0019645:94804-94823 | Msa1375200:CDS | 30.0% | |
| TGTTCTTAAAGAGCCAAAAT+GGG | + | tig0019645:94805-94824 | Msa1375200:CDS | 30.0% | |
| ! | TTTAGGTATCTTACCCATTT+TGG | - | tig0019645:94821-94840 | None:intergenic | 30.0% |
| AATAAAATTCGGAACCATAG+TGG | - | tig0019645:94859-94878 | None:intergenic | 30.0% | |
| !! | CTAAGTGTTGTTGAAGTTTT+TGG | + | tig0019645:94884-94903 | Msa1375200:CDS | 30.0% |
| ! | TATTGACATATCTGGAGTTT+AGG | - | tig0019645:95252-95271 | None:intergenic | 30.0% |
| GTTCTTCAGAAGATTAAAGA+AGG | + | tig0019645:95313-95332 | Msa1375200:CDS | 30.0% | |
| ! | TATAGTGCGTAATTTTGTCA+TGG | + | tig0019645:95366-95385 | Msa1375200:intron | 30.0% |
| ! | CTATCCTACTCTATTCATTT+TGG | + | tig0019645:95434-95453 | Msa1375200:intron | 30.0% |
| GGCCAATTAATATTTACACT+AGG | - | tig0019645:95640-95659 | None:intergenic | 30.0% | |
| CACATGTATTAGAATAAGGA+TGG | + | tig0019645:95688-95707 | Msa1375200:intron | 30.0% | |
| TCAATAGAAGTTCACTTGTT+GGG | - | tig0019645:96083-96102 | None:intergenic | 30.0% | |
| TTCAATAGAAGTTCACTTGT+TGG | - | tig0019645:96084-96103 | None:intergenic | 30.0% | |
| GTGAACTTCTATTGAAAACA+TGG | + | tig0019645:96088-96107 | Msa1375200:intron | 30.0% | |
| !!! | TTGGTTTTATAGGTTGAGTT+AGG | + | tig0019645:96370-96389 | Msa1375200:intron | 30.0% |
| CTGGATCTTAAAATTTGAGT+TGG | - | tig0019645:96397-96416 | None:intergenic | 30.0% | |
| TTATTTACGAACTGATGCAT+CGG | + | tig0019645:96491-96510 | Msa1375200:intron | 30.0% | |
| TGAAAGAAAGACAAGGAAAA+AGG | + | tig0019645:96685-96704 | Msa1375200:intron | 30.0% | |
| GAAAGAAAGACAAGGAAAAA+GGG | + | tig0019645:96686-96705 | Msa1375200:intron | 30.0% | |
| AGAATCAGAAAAAACCCAAT+TGG | + | tig0019645:96883-96902 | Msa1375200:intron | 30.0% | |
| TAATTTCCTAAACGACTCTT+AGG | + | tig0019645:96960-96979 | Msa1375200:intron | 30.0% | |
| ! | CACTCTTTTCAATTCAATTC+TGG | - | tig0019645:97081-97100 | None:intergenic | 30.0% |
| GTAGGATATCCTGTATAAAT+AGG | - | tig0019645:97248-97267 | None:intergenic | 30.0% | |
| TGTATGACGATAATACACTT+AGG | + | tig0019645:97268-97287 | Msa1375200:intron | 30.0% | |
| ACTCAATAATAGAAGAAACC+AGG | - | tig0019645:97675-97694 | None:intergenic | 30.0% | |
| !! | GCAGAGAAAGTTGGTAAAAA+TGG | - | tig0019645:93576-93595 | None:intergenic | 35.0% |
| TACTCATTCTCTTCAGCTTA+TGG | + | tig0019645:93614-93633 | Msa1375200:CDS | 35.0% | |
| ACTCATTCTCTTCAGCTTAT+GGG | + | tig0019645:93615-93634 | Msa1375200:CDS | 35.0% | |
| !!! | GTTTTGTTTCTTTCCATTCC+AGG | + | tig0019645:93680-93699 | Msa1375200:intron | 35.0% |
| TTGTTGGTATCATAGCATAG+CGG | + | tig0019645:93761-93780 | Msa1375200:intron | 35.0% | |
| !! | CAGCATAGTCTTATACTTTG+TGG | + | tig0019645:93870-93889 | Msa1375200:intron | 35.0% |
| CAGATATTTCACAAAATCCG+TGG | - | tig0019645:94100-94119 | None:intergenic | 35.0% | |
| AACTACATGCTCCTCTTTAT+TGG | - | tig0019645:94300-94319 | None:intergenic | 35.0% | |
| AATTATGCTTCGGCATCAAA+GGG | + | tig0019645:94500-94519 | Msa1375200:CDS | 35.0% | |
| TGCCTCTAATATCTTAAGCA+GGG | + | tig0019645:94559-94578 | Msa1375200:CDS | 35.0% | |
| ATCCCTGCTTAAGATATTAG+AGG | - | tig0019645:94564-94583 | None:intergenic | 35.0% | |
| AGAACTTTCAGAAGAAACCT+TGG | + | tig0019645:94637-94656 | Msa1375200:CDS | 35.0% | |
| ! | ATTTTACTGCCTCAAATGTG+AGG | + | tig0019645:94768-94787 | Msa1375200:CDS | 35.0% |
| !! | GGCTTTGAAGATTCAACTTT+AGG | - | tig0019645:94838-94857 | None:intergenic | 35.0% |
| TTGAATCTTCAAAGCCACTA+TGG | + | tig0019645:94842-94861 | Msa1375200:CDS | 35.0% | |
| !!! | TGTTGTTGAAGTTTTTGGTG+TGG | + | tig0019645:94889-94908 | Msa1375200:CDS | 35.0% |
| CAAGACAATCTATTTGCATC+TGG | + | tig0019645:94950-94969 | Msa1375200:CDS | 35.0% | |
| AATCTATTTGCATCTGGAGA+AGG | + | tig0019645:94956-94975 | Msa1375200:CDS | 35.0% | |
| ! | TGTTCAGCAAAACACTTTTG+AGG | + | tig0019645:95033-95052 | Msa1375200:CDS | 35.0% |
| ! | GTTCAGCAAAACACTTTTGA+GGG | + | tig0019645:95034-95053 | Msa1375200:CDS | 35.0% |
| ! | TTCAGCAAAACACTTTTGAG+GGG | + | tig0019645:95035-95054 | Msa1375200:CDS | 35.0% |
| !!! | AATTGTTTTGGAGCGGTATA+TGG | + | tig0019645:95222-95241 | Msa1375200:CDS | 35.0% |
| ATTTCTGACCATATGAACTC+AGG | + | tig0019645:95595-95614 | Msa1375200:intron | 35.0% | |
| TATTAATTGGCCCAATAGAC+AGG | + | tig0019645:95648-95667 | Msa1375200:intron | 35.0% | |
| ATTAATTGGCCCAATAGACA+GGG | + | tig0019645:95649-95668 | Msa1375200:intron | 35.0% | |
| GATGGGCATTTATTGCTAAT+CGG | + | tig0019645:95706-95725 | Msa1375200:intron | 35.0% | |
| TGCTAATCGGTTGTTTATGT+TGG | + | tig0019645:95719-95738 | Msa1375200:intron | 35.0% | |
| TTGTTTATGTTGGAGAGACT+AGG | + | tig0019645:95729-95748 | Msa1375200:intron | 35.0% | |
| ACAGAGACAATTTCACAACA+GGG | - | tig0019645:95820-95839 | None:intergenic | 35.0% | |
| AACAGAGACAATTTCACAAC+AGG | - | tig0019645:95821-95840 | None:intergenic | 35.0% | |
| TGTTGTGAAATTGTCTCTGT+TGG | + | tig0019645:95820-95839 | Msa1375200:intron | 35.0% | |
| GCACTATTATTGAACTTCTC+TGG | - | tig0019645:95854-95873 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGTCACTGACCAGT+CGG | - | tig0019645:96008-96027 | None:intergenic | 35.0% |
| AAATAGTGAACTACTGACAG+TGG | + | tig0019645:96026-96045 | Msa1375200:intron | 35.0% | |
| AATAGTGAACTACTGACAGT+GGG | + | tig0019645:96027-96046 | Msa1375200:intron | 35.0% | |
| GATGTATTCAAACTTGACGT+TGG | + | tig0019645:96172-96191 | Msa1375200:intron | 35.0% | |
| ATTTAGTCCTACATTGCCTA+AGG | + | tig0019645:96303-96322 | Msa1375200:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | tig0019645:96786-96805 | None:intergenic | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | tig0019645:96785-96804 | Msa1375200:intron | 35.0% |
| TCTGATTCTTTCCTTAACCT+TGG | - | tig0019645:96872-96891 | None:intergenic | 35.0% | |
| ! | GAAAAGTGGATTCTTTCCTT+GGG | - | tig0019645:96916-96935 | None:intergenic | 35.0% |
| ! | TGAAAAGTGGATTCTTTCCT+TGG | - | tig0019645:96917-96936 | None:intergenic | 35.0% |
| !! | GGAAAGAATCCACTTTTCAA+CGG | + | tig0019645:96918-96937 | Msa1375200:intron | 35.0% |
| !! | GAAAGAATCCACTTTTCAAC+GGG | + | tig0019645:96919-96938 | Msa1375200:intron | 35.0% |
| GAGGTTTATTGAGTTAGAGA+GGG | - | tig0019645:97226-97245 | None:intergenic | 35.0% | |
| GGATATCCTGTATAAATAGG+AGG | - | tig0019645:97245-97264 | None:intergenic | 35.0% | |
| GTGTATTATCGTCATACAGT+AGG | - | tig0019645:97266-97285 | None:intergenic | 35.0% | |
| TTCTTAATAATTCAGGTCCG+AGG | + | tig0019645:97466-97485 | Msa1375200:intron | 35.0% | |
| ! | CAGGTTTCTTTGGAAAACAA+GGG | + | tig0019645:97509-97528 | Msa1375200:CDS | 35.0% |
| !! | CTCAAAAATGGACTGTCAAA+AGG | - | tig0019645:97723-97742 | None:intergenic | 35.0% |
| TAGAGTGGATGCAATAACTA+AGG | + | tig0019645:97833-97852 | Msa1375200:CDS | 35.0% | |
| ATTATGCAGAAGTCAAGTCG+CGG | - | tig0019645:93458-93477 | None:intergenic | 40.0% | |
| ATGGGGTTATGAAGAAGAGA+AGG | - | tig0019645:93532-93551 | None:intergenic | 40.0% | |
| AAAATGGAAACTTTGGGCAG+AGG | - | tig0019645:93560-93579 | None:intergenic | 40.0% | |
| !! | GGTTAATTTGTTCTCGGATG+AGG | + | tig0019645:93732-93751 | Msa1375200:intron | 40.0% |
| !! | TAATTTGTTCTCGGATGAGG+AGG | + | tig0019645:93735-93754 | Msa1375200:intron | 40.0% |
| ! | AATTTGTTCTCGGATGAGGA+GGG | + | tig0019645:93736-93755 | Msa1375200:intron | 40.0% |
| TTAACTCAACCCCAACAAAC+CGG | + | tig0019645:93899-93918 | Msa1375200:intron | 40.0% | |
| TCACTCACTGATAGAGAAAG+TGG | + | tig0019645:94227-94246 | Msa1375200:CDS | 40.0% | |
| !! | TACTGATTCGGCCAATAAAG+AGG | + | tig0019645:94286-94305 | Msa1375200:CDS | 40.0% |
| TCTTGATGAGTTCAAGAGCA+GGG | + | tig0019645:94397-94416 | Msa1375200:CDS | 40.0% | |
| GTAATACATAGATTGGAGCC+TGG | + | tig0019645:94464-94483 | Msa1375200:CDS | 40.0% | |
| TAATTGTATTCTGCACCTCC+AGG | - | tig0019645:94485-94504 | None:intergenic | 40.0% | |
| CAATTATGCTTCGGCATCAA+AGG | + | tig0019645:94499-94518 | Msa1375200:CDS | 40.0% | |
| ! | TCAAAGGGAGCCAAAGTTTT+AGG | + | tig0019645:94515-94534 | Msa1375200:CDS | 40.0% |
| GGTTCCAATAAAGAAGGGAA+AGG | + | tig0019645:94536-94555 | Msa1375200:CDS | 40.0% | |
| GTGCCTCTAATATCTTAAGC+AGG | + | tig0019645:94558-94577 | Msa1375200:CDS | 40.0% | |
| AATTTCTCCTCCACAGAACA+CGG | - | tig0019645:94608-94627 | None:intergenic | 40.0% | |
| TTGGAAAGTTCAGACTTCCA+TGG | - | tig0019645:94724-94743 | None:intergenic | 40.0% | |
| TGAACTTTCCAACAGATGCT+TGG | + | tig0019645:94732-94751 | Msa1375200:CDS | 40.0% | |
| GAACTTTCCAACAGATGCTT+GGG | + | tig0019645:94733-94752 | Msa1375200:CDS | 40.0% | |
| TTGAGGCAGTAAAATTCCCA+AGG | - | tig0019645:94763-94782 | None:intergenic | 40.0% | |
| ! | AAGAAGGGATATCTGAAGCA+GGG | - | tig0019645:95072-95091 | None:intergenic | 40.0% |
| CCGTTTCATGATTGGAAGAA+GGG | - | tig0019645:95087-95106 | None:intergenic | 40.0% | |
| CCCTTCTTCCAATCATGAAA+CGG | + | tig0019645:95084-95103 | Msa1375200:CDS | 40.0% | |
| ! | ACTGTTTGCCGTTTCATGAT+TGG | - | tig0019645:95095-95114 | None:intergenic | 40.0% |
| TAAGAATCTCATTGACCAGC+AGG | + | tig0019645:95339-95358 | Msa1375200:CDS | 40.0% | |
| ATGCTGGTGATCTCAATTCT+TGG | + | tig0019645:95486-95505 | Msa1375200:CDS | 40.0% | |
| GTCTCAAGTTTCTTTGCAGT+TGG | + | tig0019645:95511-95530 | Msa1375200:CDS | 40.0% | |
| AATGAGCTCCTGAGTTCATA+TGG | - | tig0019645:95606-95625 | None:intergenic | 40.0% | |
| TATATTGGGCCCTGTCTATT+GGG | - | tig0019645:95661-95680 | None:intergenic | 40.0% | |
| CAGAGACAATTTCACAACAG+GGG | - | tig0019645:95819-95838 | None:intergenic | 40.0% | |
| CATCTATCAGTAAACTTCGG+AGG | + | tig0019645:95910-95929 | Msa1375200:intron | 40.0% | |
| GAACTCCGATAGAAAGACTA+AGG | - | tig0019645:95974-95993 | None:intergenic | 40.0% | |
| !!! | TTTTTTGTCACTGACCAGTC+GGG | - | tig0019645:96007-96026 | None:intergenic | 40.0% |
| CAGAATAAACTAGCCAGATC+TGG | + | tig0019645:96057-96076 | Msa1375200:intron | 40.0% | |
| ATAAGCACAACTTAGGCCTT+AGG | - | tig0019645:96322-96341 | None:intergenic | 40.0% | |
| GCTGTACTCACTTTACAAGT+TGG | + | tig0019645:96351-96370 | Msa1375200:intron | 40.0% | |
| CAGAAGCTCGTCATCAAAAT+CGG | - | tig0019645:96426-96445 | None:intergenic | 40.0% | |
| TTCAAAGGCTCTGCTGATAT+TGG | + | tig0019645:96595-96614 | Msa1375200:intron | 40.0% | |
| ATTGGTACTCCCTCGAAAAA+CGG | + | tig0019645:96613-96632 | Msa1375200:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | tig0019645:96760-96779 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | tig0019645:96791-96810 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | tig0019645:96792-96811 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | tig0019645:96836-96855 | None:intergenic | 40.0% | |
| ! | ACTGTTTTCCCGTTGAAAAG+TGG | - | tig0019645:96930-96949 | None:intergenic | 40.0% |
| AGTACACCTAAGAGTCGTTT+AGG | - | tig0019645:96969-96988 | None:intergenic | 40.0% | |
| AGTTAGCTACTTAGCTGAAG+TGG | - | tig0019645:97028-97047 | None:intergenic | 40.0% | |
| AGTAGTGACTCTTTGTGAAG+GGG | - | tig0019645:97172-97191 | None:intergenic | 40.0% | |
| GAGTAGTGACTCTTTGTGAA+GGG | - | tig0019645:97173-97192 | None:intergenic | 40.0% | |
| AGAGTAGTGACTCTTTGTGA+AGG | - | tig0019645:97174-97193 | None:intergenic | 40.0% | |
| GGAGGTTTATTGAGTTAGAG+AGG | - | tig0019645:97227-97246 | None:intergenic | 40.0% | |
| ! | GGTCATTGCTCTAAGTTTAG+TGG | + | tig0019645:97316-97335 | Msa1375200:intron | 40.0% |
| ! | GCAGGTTTCTTTGGAAAACA+AGG | + | tig0019645:97508-97527 | Msa1375200:CDS | 40.0% |
| ! | TGCTTTGTTACGGCTATCTT+TGG | + | tig0019645:97571-97590 | Msa1375200:CDS | 40.0% |
| GTTACGGCTATCTTTGGATA+TGG | + | tig0019645:97577-97596 | Msa1375200:CDS | 40.0% | |
| ! | TTGATAGAACAGTTGACTCC+AGG | + | tig0019645:97627-97646 | Msa1375200:CDS | 40.0% |
| ! | TGATAGAACAGTTGACTCCA+GGG | + | tig0019645:97628-97647 | Msa1375200:CDS | 40.0% |
| AGTGGATGCAATAACTAAGG+TGG | + | tig0019645:97836-97855 | Msa1375200:CDS | 40.0% | |
| CTTGTCATTCATCCCTAAGC+AGG | + | tig0019645:93383-93402 | Msa1375200:five_prime_UTR | 45.0% | |
| ACGTAAAGCTCGCATGGAAT+TGG | + | tig0019645:93498-93517 | Msa1375200:CDS | 45.0% | |
| TTTGGGCAGAGGAAGAAATG+GGG | - | tig0019645:93549-93568 | None:intergenic | 45.0% | |
| CTTTGGGCAGAGGAAGAAAT+GGG | - | tig0019645:93550-93569 | None:intergenic | 45.0% | |
| ACTTTGGGCAGAGGAAGAAA+TGG | - | tig0019645:93551-93570 | None:intergenic | 45.0% | |
| GTTTCTTTCCATTCCAGGCA+TGG | + | tig0019645:93685-93704 | Msa1375200:intron | 45.0% | |
| GACTTATAGGCCGATGTTAG+TGG | + | tig0019645:93711-93730 | Msa1375200:intron | 45.0% | |
| !! | GCTGAGGCTATTGGTTTAGT+TGG | + | tig0019645:94200-94219 | Msa1375200:CDS | 45.0% |
| AGTGGTGTTTATGCGCTACT+TGG | + | tig0019645:94245-94264 | Msa1375200:CDS | 45.0% | |
| TTGAACTCATCAAGACCGAG+AGG | - | tig0019645:94392-94411 | None:intergenic | 45.0% | |
| GTCTTGATGAGTTCAAGAGC+AGG | + | tig0019645:94396-94415 | Msa1375200:CDS | 45.0% | |
| !! | AAGTCAGGCACTGATCAATC+TGG | + | tig0019645:94437-94456 | Msa1375200:CDS | 45.0% |
| ATACATAGATTGGAGCCTGG+AGG | + | tig0019645:94467-94486 | Msa1375200:CDS | 45.0% | |
| GGCACCTTTCCCTTCTTTAT+TGG | - | tig0019645:94543-94562 | None:intergenic | 45.0% | |
| TCTTCGAAATCCGTGTTCTG+TGG | + | tig0019645:94595-94614 | Msa1375200:CDS | 45.0% | |
| AGGAAAACCCAAGCATCTGT+TGG | - | tig0019645:94743-94762 | None:intergenic | 45.0% | |
| ! | ACAGATGCTTGGGTTTTCCT+TGG | + | tig0019645:94743-94762 | Msa1375200:CDS | 45.0% |
| ! | CAGATGCTTGGGTTTTCCTT+GGG | + | tig0019645:94744-94763 | Msa1375200:CDS | 45.0% |
| TTGAGCATGCCTCACATTTG+AGG | - | tig0019645:94780-94799 | None:intergenic | 45.0% | |
| CAAATGTGAGGCATGCTCAA+AGG | + | tig0019645:94780-94799 | Msa1375200:CDS | 45.0% | |
| ATGTTCACTCTCAGCAGGAT+CGG | - | tig0019645:95014-95033 | None:intergenic | 45.0% | |
| TGAACATGTTCACTCTCAGC+AGG | - | tig0019645:95019-95038 | None:intergenic | 45.0% | |
| ! | GAAGAAGGGATATCTGAAGC+AGG | - | tig0019645:95073-95092 | None:intergenic | 45.0% |
| GCCGTTTCATGATTGGAAGA+AGG | - | tig0019645:95088-95107 | None:intergenic | 45.0% | |
| !! | GGTTGACGGATTTCTTCAAC+TGG | - | tig0019645:95130-95149 | None:intergenic | 45.0% |
| GAAGAAATCCGTCAACCAGT+TGG | + | tig0019645:95133-95152 | Msa1375200:CDS | 45.0% | |
| ATCTTGAGAACAGTATCCCC+AGG | - | tig0019645:95166-95185 | None:intergenic | 45.0% | |
| TACGCACTATAACATCCTGC+TGG | - | tig0019645:95357-95376 | None:intergenic | 45.0% | |
| AAATGATTCGTTGCTCGTGC+AGG | + | tig0019645:95457-95476 | Msa1375200:intron | 45.0% | |
| GCAGTTGGATCATATACTCC+AGG | + | tig0019645:95526-95545 | Msa1375200:CDS | 45.0% | |
| !!! | TCCAGGACAATGCTGTTTTG+AGG | + | tig0019645:95543-95562 | Msa1375200:CDS | 45.0% |
| ACCTCAAAACAGCATTGTCC+TGG | - | tig0019645:95547-95566 | None:intergenic | 45.0% | |
| CTATATTGGGCCCTGTCTAT+TGG | - | tig0019645:95662-95681 | None:intergenic | 45.0% | |
| AGAGACTAGGCTCGAATTAG+AGG | + | tig0019645:95742-95761 | Msa1375200:intron | 45.0% | |
| CCGATAGAAAGACTAAGGCA+GGG | - | tig0019645:95969-95988 | None:intergenic | 45.0% | |
| ! | CCCTGCCTTAGTCTTTCTAT+CGG | + | tig0019645:95966-95985 | Msa1375200:intron | 45.0% |
| TCCGATAGAAAGACTAAGGC+AGG | - | tig0019645:95970-95989 | None:intergenic | 45.0% | |
| GGAGACTACAACTGCAACAA+AGG | - | tig0019645:96253-96272 | None:intergenic | 45.0% | |
| ! | AGTCTCCAGCACCATTGTTT+TGG | + | tig0019645:96266-96285 | Msa1375200:intron | 45.0% |
| ! | GTCTCCAGCACCATTGTTTT+GGG | + | tig0019645:96267-96286 | Msa1375200:intron | 45.0% |
| !!! | CACCATTGTTTTGGGTGTGA+GGG | + | tig0019645:96275-96294 | Msa1375200:intron | 45.0% |
| !!! | ACCATTGTTTTGGGTGTGAG+GGG | + | tig0019645:96276-96295 | Msa1375200:intron | 45.0% |
| ACTTAGGCCTTAGGCAATGT+AGG | - | tig0019645:96313-96332 | None:intergenic | 45.0% | |
| TCATCAAAATCGGCAGATGC+TGG | - | tig0019645:96416-96435 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | tig0019645:96761-96780 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | tig0019645:96764-96783 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | tig0019645:96796-96815 | Msa1375200:intron | 45.0% |
| CCTTGGGAGCAAAACCAATT+GGG | - | tig0019645:96900-96919 | None:intergenic | 45.0% | |
| TCCTTGGGAGCAAAACCAAT+TGG | - | tig0019645:96901-96920 | None:intergenic | 45.0% | |
| TGAGAGAAATCTCTCCTCCA+AGG | + | tig0019645:97142-97161 | Msa1375200:intron | 45.0% | |
| GAGAGAAATCTCTCCTCCAA+GGG | + | tig0019645:97143-97162 | Msa1375200:intron | 45.0% | |
| ATTCAGGTCCGAGGTTGAAA+AGG | + | tig0019645:97475-97494 | Msa1375200:intron | 45.0% | |
| ! | TGACTCCAGGGAATTTTGTG+TGG | + | tig0019645:97640-97659 | Msa1375200:CDS | 45.0% |
| ! | GACTCCAGGGAATTTTGTGT+GGG | + | tig0019645:97641-97660 | Msa1375200:CDS | 45.0% |
| CAGTTCGACATCACTTAGAG+TGG | + | tig0019645:97818-97837 | Msa1375200:CDS | 45.0% | |
| ! | GAGTGCGTTGACACTTACGA+TGG | - | tig0019645:93352-93371 | None:intergenic | 50.0% |
| TTCCTACTGCTGCCTGCTTA+GGG | - | tig0019645:93398-93417 | None:intergenic | 50.0% | |
| GAGATCACGTAAAGCTCGCA+TGG | + | tig0019645:93492-93511 | Msa1375200:CDS | 50.0% | |
| AGCTTATGGGTCACTCACAC+AGG | + | tig0019645:93628-93647 | Msa1375200:CDS | 50.0% | |
| CTTTCCATTCCAGGCATGGT+AGG | + | tig0019645:93689-93708 | Msa1375200:intron | 50.0% | |
| AAGTCCTACCATGCCTGGAA+TGG | - | tig0019645:93696-93715 | None:intergenic | 50.0% | |
| CCTATAAGTCCTACCATGCC+TGG | - | tig0019645:93701-93720 | None:intergenic | 50.0% | |
| CCAGGCATGGTAGGACTTAT+AGG | + | tig0019645:93698-93717 | Msa1375200:intron | 50.0% | |
| TCGGATGAGGAGGGATTTGT+TGG | + | tig0019645:93745-93764 | Msa1375200:intron | 50.0% | |
| GGATCTGAAGAGCTTTCAGC+TGG | + | tig0019645:94050-94069 | Msa1375200:CDS | 50.0% | |
| GGTGTTTATGCGCTACTTGG+TGG | + | tig0019645:94248-94267 | Msa1375200:CDS | 50.0% | |
| TCGAAATCCGTGTTCTGTGG+AGG | + | tig0019645:94598-94617 | Msa1375200:CDS | 50.0% | |
| ATCCTCCAGCATCCTCTCAA+CGG | - | tig0019645:94918-94937 | None:intergenic | 50.0% | |
| TGTTCACTCTCAGCAGGATC+GGG | - | tig0019645:95013-95032 | None:intergenic | 50.0% | |
| ! | AGGGATATCTGAAGCAGGGT+GGG | - | tig0019645:95068-95087 | None:intergenic | 50.0% |
| ! | AAGGGATATCTGAAGCAGGG+TGG | - | tig0019645:95069-95088 | None:intergenic | 50.0% |
| CGGATTTCTTCAACTGGAGC+AGG | - | tig0019645:95124-95143 | None:intergenic | 50.0% | |
| AAATCCGTCAACCAGTTGGC+AGG | + | tig0019645:95137-95156 | Msa1375200:CDS | 50.0% | |
| CTCGTGCAGGCAAAATATGC+TGG | + | tig0019645:95470-95489 | Msa1375200:intron | 50.0% | |
| GTTCTATGCTAAGACCCGAC+TGG | + | tig0019645:95990-96009 | Msa1375200:intron | 50.0% | |
| ! | TTCACTTGTTGGGCCAGATC+TGG | - | tig0019645:96073-96092 | None:intergenic | 50.0% |
| CACACCCAAAACAATGGTGC+TGG | - | tig0019645:96274-96293 | None:intergenic | 50.0% | |
| !!! | GCACCATTGTTTTGGGTGTG+AGG | + | tig0019645:96274-96293 | Msa1375200:intron | 50.0% |
| TCCCCTCACACCCAAAACAA+TGG | - | tig0019645:96280-96299 | None:intergenic | 50.0% | |
| GTACTCCCTCGAAAAACGGA+GGG | + | tig0019645:96617-96636 | Msa1375200:intron | 50.0% | |
| !! | TCCAACCCTCCGTTTTTCGA+GGG | - | tig0019645:96625-96644 | None:intergenic | 50.0% |
| TCGAAAAACGGAGGGTTGGA+CGG | + | tig0019645:96625-96644 | Msa1375200:intron | 50.0% | |
| GACAAGGAAAAAGGGCAACC+TGG | + | tig0019645:96694-96713 | Msa1375200:intron | 50.0% | |
| AAGGTCACGAGTTCAAGTCC+TGG | - | tig0019645:96817-96836 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | tig0019645:96852-96871 | Msa1375200:intron | 50.0% | |
| TACCAGTTGCGCCAAGGTTA+AGG | + | tig0019645:96858-96877 | Msa1375200:intron | 50.0% | |
| TTCCTTAACCTTGGCGCAAC+TGG | - | tig0019645:96863-96882 | None:intergenic | 50.0% | |
| !!! | CCCAATTGGTTTTGCTCCCA+AGG | + | tig0019645:96897-96916 | Msa1375200:intron | 50.0% |
| CTTTGTGAAGGGGAAACCCT+TGG | - | tig0019645:97162-97181 | None:intergenic | 50.0% | |
| CCAAAGAAACCTGCTTCTCC+CGG | - | tig0019645:97502-97521 | None:intergenic | 50.0% | |
| GCTACCCACACAAAATTCCC+TGG | - | tig0019645:97648-97667 | None:intergenic | 50.0% | |
| TTTGTGTGGGTAGCTCTTCC+TGG | + | tig0019645:97654-97673 | Msa1375200:CDS | 50.0% | |
| ATCCCTAAGCAGGCAGCAGT+AGG | + | tig0019645:93393-93412 | Msa1375200:five_prime_UTR | 55.0% | |
| CTTCCTACTGCTGCCTGCTT+AGG | - | tig0019645:93399-93418 | None:intergenic | 55.0% | |
| AGGCAGCAGTAGGAAGACGA+GGG | + | tig0019645:93403-93422 | Msa1375200:five_prime_UTR | 55.0% | |
| AGCAGTAGGAAGACGAGGGA+GGG | + | tig0019645:93407-93426 | Msa1375200:five_prime_UTR | 55.0% | |
| !! | CCTCACAAGCCGGTTTGTTG+GGG | - | tig0019645:93911-93930 | None:intergenic | 55.0% |
| !! | GCCTCACAAGCCGGTTTGTT+GGG | - | tig0019645:93912-93931 | None:intergenic | 55.0% |
| GCAATCTTCGCCTCACAAGC+CGG | - | tig0019645:93921-93940 | None:intergenic | 55.0% | |
| !! | CTCTAAAGGTGGAGGTGCTG+AGG | + | tig0019645:94184-94203 | Msa1375200:CDS | 55.0% |
| TTATCTCGGGCTGTGCCTCT+CGG | + | tig0019645:94374-94393 | Msa1375200:CDS | 55.0% | |
| TTGGTGTGGATGCCGTTGAG+AGG | + | tig0019645:94903-94922 | Msa1375200:CDS | 55.0% | |
| ACTCTCAGCAGGATCGGGAT+GGG | - | tig0019645:95008-95027 | None:intergenic | 55.0% | |
| GCATCCTGCCAACTGGTTGA+CGG | - | tig0019645:95144-95163 | None:intergenic | 55.0% | |
| AACCAGTTGGCAGGATGCCT+GGG | + | tig0019645:95146-95165 | Msa1375200:CDS | 55.0% | |
| AGAGGGGACTGCAATTCAGG+CGG | - | tig0019645:96203-96222 | None:intergenic | 55.0% | |
| GCTAGAGGGGACTGCAATTC+AGG | - | tig0019645:96206-96225 | None:intergenic | 55.0% | |
| AGCCACCTAAGTGCGGCATT+TGG | + | tig0019645:96223-96242 | Msa1375200:intron | 55.0% | |
| GCCACCTAAGTGCGGCATTT+GGG | + | tig0019645:96224-96243 | Msa1375200:intron | 55.0% | |
| ACCCAAATGCCGCACTTAGG+TGG | - | tig0019645:96228-96247 | None:intergenic | 55.0% | |
| GCAACCCAAATGCCGCACTT+AGG | - | tig0019645:96231-96250 | None:intergenic | 55.0% | |
| GGTACTCCCTCGAAAAACGG+AGG | + | tig0019645:96616-96635 | Msa1375200:intron | 55.0% | |
| TCCCTCGAAAAACGGAGGGT+TGG | + | tig0019645:96621-96640 | Msa1375200:intron | 55.0% | |
| !! | GTCCAACCCTCCGTTTTTCG+AGG | - | tig0019645:96626-96645 | None:intergenic | 55.0% |
| TGTGAAGGGGAAACCCTTGG+AGG | - | tig0019645:97159-97178 | None:intergenic | 55.0% | |
| GGTCCGAGGTTGAAAAGGTC+CGG | + | tig0019645:97480-97499 | Msa1375200:intron | 55.0% | |
| GTCCGAGGTTGAAAAGGTCC+GGG | + | tig0019645:97481-97500 | Msa1375200:CDS | 55.0% | |
| ! | CTCCCGGACCTTTTCAACCT+CGG | - | tig0019645:97486-97505 | None:intergenic | 55.0% |
| TGAAAAGGTCCGGGAGAAGC+AGG | + | tig0019645:97490-97509 | Msa1375200:CDS | 55.0% | |
| CCGGGAGAAGCAGGTTTCTT+TGG | + | tig0019645:97499-97518 | Msa1375200:CDS | 55.0% | |
| CAGGCAGCAGTAGGAAGACG+AGG | + | tig0019645:93402-93421 | Msa1375200:five_prime_UTR | 60.0% | |
| CAGCAGTAGGAAGACGAGGG+AGG | + | tig0019645:93406-93425 | Msa1375200:five_prime_UTR | 60.0% | |
| GCAGTAGGAAGACGAGGGAG+GGG | + | tig0019645:93408-93427 | Msa1375200:five_prime_UTR | 60.0% | |
| !! | CCCCAACAAACCGGCTTGTG+AGG | + | tig0019645:93908-93927 | Msa1375200:intron | 60.0% |
| !! | CGCCTCACAAGCCGGTTTGT+TGG | - | tig0019645:93913-93932 | None:intergenic | 60.0% |
| !! | GGTGGAGGTGCTGAGGCTAT+TGG | + | tig0019645:94191-94210 | Msa1375200:CDS | 60.0% |
| GGATGCCGTTGAGAGGATGC+TGG | + | tig0019645:94910-94929 | Msa1375200:CDS | 60.0% | |
| TGCCGTTGAGAGGATGCTGG+AGG | + | tig0019645:94913-94932 | Msa1375200:CDS | 60.0% | |
| CTCTCAGCAGGATCGGGATG+GGG | - | tig0019645:95007-95026 | None:intergenic | 60.0% | |
| CACTCTCAGCAGGATCGGGA+TGG | - | tig0019645:95009-95028 | None:intergenic | 60.0% | |
| CAACCAGTTGGCAGGATGCC+TGG | + | tig0019645:95145-95164 | Msa1375200:CDS | 60.0% | |
| ACCAGTTGGCAGGATGCCTG+GGG | + | tig0019645:95147-95166 | Msa1375200:CDS | 60.0% | |
| CCGCACTTAGGTGGCTAGAG+GGG | - | tig0019645:96219-96238 | None:intergenic | 60.0% | |
| CCCCTCTAGCCACCTAAGTG+CGG | + | tig0019645:96216-96235 | Msa1375200:intron | 60.0% | |
| GCCGCACTTAGGTGGCTAGA+GGG | - | tig0019645:96220-96239 | None:intergenic | 60.0% | |
| TGCCGCACTTAGGTGGCTAG+AGG | - | tig0019645:96221-96240 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | + | tig0019645:96720-96739 | Msa1375200:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | + | tig0019645:96721-96740 | Msa1375200:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | tig0019645:96748-96767 | None:intergenic | 60.0% |
| TCCCCAGGCATCCTGCCAAC+TGG | - | tig0019645:95151-95170 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+AGG | - | tig0019645:96715-96734 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | tig0019645:96732-96751 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | tig0019645:96733-96752 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | tig0019645:96732-96751 | Msa1375200:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | tig0019645:96733-96752 | Msa1375200:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | tig0019645:96746-96765 | Msa1375200:intron | 65.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | tig0019645:96726-96745 | Msa1375200:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | tig0019645:96727-96746 | Msa1375200:intron | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | tig0019645:96731-96750 | Msa1375200:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019645 | gene | 93335 | 97893 | 93335 | ID=Msa1375200;Name=Msa1375200 |
| tig0019645 | mRNA | 93335 | 97893 | 93335 | ID=Msa1375200-mRNA-1;Parent=Msa1375200;Name=Msa1375200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=152|0.75|0.6|1|1|1|5|0|628 |
| tig0019645 | exon | 93335 | 93649 | 93335 | ID=Msa1375200-mRNA-1:exon:4322;Parent=Msa1375200-mRNA-1 |
| tig0019645 | exon | 94048 | 95369 | 94048 | ID=Msa1375200-mRNA-1:exon:4323;Parent=Msa1375200-mRNA-1 |
| tig0019645 | exon | 95479 | 95564 | 95479 | ID=Msa1375200-mRNA-1:exon:4324;Parent=Msa1375200-mRNA-1 |
| tig0019645 | exon | 97481 | 97675 | 97481 | ID=Msa1375200-mRNA-1:exon:4325;Parent=Msa1375200-mRNA-1 |
| tig0019645 | exon | 97773 | 97893 | 97773 | ID=Msa1375200-mRNA-1:exon:4326;Parent=Msa1375200-mRNA-1 |
| tig0019645 | five_prime_UTR | 93335 | 93486 | 93335 | ID=Msa1375200-mRNA-1:five_prime_utr;Parent=Msa1375200-mRNA-1 |
| tig0019645 | CDS | 93487 | 93649 | 93487 | ID=Msa1375200-mRNA-1:cds;Parent=Msa1375200-mRNA-1 |
| tig0019645 | CDS | 94048 | 95369 | 94048 | ID=Msa1375200-mRNA-1:cds;Parent=Msa1375200-mRNA-1 |
| tig0019645 | CDS | 95479 | 95564 | 95479 | ID=Msa1375200-mRNA-1:cds;Parent=Msa1375200-mRNA-1 |
| tig0019645 | CDS | 97481 | 97675 | 97481 | ID=Msa1375200-mRNA-1:cds;Parent=Msa1375200-mRNA-1 |
| tig0019645 | CDS | 97773 | 97893 | 97773 | ID=Msa1375200-mRNA-1:cds;Parent=Msa1375200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
