AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167710 MtrunA17_Chr1g0183121 94.585 591 23 3 1 590 1 583 0.0 1130
Msa0167710 MtrunA17_Chr4g0013761 81.186 590 103 4 1 585 1 587 0.0 947
Msa0167710 MtrunA17_Chr3g0078011 61.238 614 203 13 1 604 1 589 0.0 697
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167710 AT1G71360.1 42.475 598 309 9 23 605 19 596 4.21e-151 448
Msa0167710 AT1G71360.2 43.384 597 305 10 23 605 45 622 2.18e-150 447
Msa0167710 AT1G22882.1 45.234 577 242 11 75 605 112 660 1.95e-145 436
Msa0167710 AT4G23950.1 41.809 409 215 6 196 602 170 557 4.08e-95 303
Msa0167710 AT4G23950.2 41.707 410 215 7 196 602 170 558 1.80e-93 298

Find 139 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTTTCTCTTCAGCTTA+TGG 0.127257 1_4:-49656063 Msa0167710:CDS
TTTAGGTATCTTACCCATTT+TGG 0.166001 1_4:+49654859 None:intergenic
GGCACCTTTCCCTTCTTTAT+TGG 0.187268 1_4:+49655137 None:intergenic
AGACCTAAATTTAATTGTTT+TGG 0.201241 1_4:-49654467 Msa0167710:CDS
CCGGGAGAAGCAGGTTTCTT+TGG 0.240817 1_4:-49652179 Msa0167710:CDS
AACTACATGCTCCTCTTTAT+TGG 0.244993 1_4:+49655380 None:intergenic
TTTCAGCTGGATTATCAAAT+TGG 0.258814 1_4:-49655614 Msa0167710:CDS
ACTCTTTCTCTTCAGCTTAT+GGG 0.261830 1_4:-49656062 Msa0167710:CDS
GCTCCAAAACAATTAAATTT+AGG 0.263875 1_4:+49654464 None:intergenic
TTGTTCTTAAAGAGCCAAAA+TGG 0.265261 1_4:-49654873 Msa0167710:CDS
TTTGTGTGGGTAGCTCTTCC+TGG 0.271181 1_4:-49652024 Msa0167710:CDS
GGCTTTGAAGATTCAACTTT+AGG 0.274884 1_4:+49654842 None:intergenic
TTTATTGGAACCTAAAACTT+TGG 0.279402 1_4:+49655152 None:intergenic
ATCCCTGCTTAAGATATTAG+AGG 0.285746 1_4:+49655116 None:intergenic
TGCTTTGTTACGGCTATCTT+TGG 0.291860 1_4:-49652107 Msa0167710:CDS
TTTGAAAATATTGACATATC+TGG 0.300686 1_4:+49654420 None:intergenic
GATTTCAAAGTCTTTCAAAT+TGG 0.322234 1_4:+49654978 None:intergenic
GTTACGGCTATCTTTGGATA+TGG 0.325038 1_4:-49652101 Msa0167710:CDS
TATTGACATATCTGGAGTTT+AGG 0.333964 1_4:+49654428 None:intergenic
CAACCAGTTGGCAGGATGCC+TGG 0.353646 1_4:-49654532 Msa0167710:CDS
CTTCCTACTGCTGCCTGCTT+AGG 0.354545 1_4:+49656286 None:intergenic
ATGCTGGTGATCTCAATTCT+TGG 0.382007 1_4:-49654191 Msa0167710:CDS
TTTCATTGATTGCTTTGTTA+CGG 0.388387 1_4:-49652117 Msa0167710:CDS
ACTGTTTGCCGTTTCATGAT+TGG 0.392357 1_4:+49654585 None:intergenic
ACGTAAAGCTCGCATGGAAT+TGG 0.396219 1_4:-49656179 Msa0167710:CDS
GAACTTTCCAACAGATGCTT+GGG 0.398646 1_4:-49654944 Msa0167710:CDS
ACTTAGTGTGCAATAAAATT+CGG 0.412768 1_4:+49654810 None:intergenic
TGGAAGTGTAATACATAGAT+TGG 0.414499 1_4:-49655220 Msa0167710:CDS
TGAACTTTCCAACAGATGCT+TGG 0.423228 1_4:-49654945 Msa0167710:CDS
ACTTTGGGCAGAGGAAGAAA+TGG 0.424463 1_4:+49656129 None:intergenic
GGTGGAGGTGCTGAGGCTAT+TGG 0.424475 1_4:-49655486 Msa0167710:CDS
GTCTCAAGTTTCTTTGCAGT+TGG 0.424631 1_4:-49654166 Msa0167710:CDS
CAAGACAATCTATTTGCATC+TGG 0.428687 1_4:-49654727 Msa0167710:CDS
GGTTGACGGATTTCTTCAAC+TGG 0.428942 1_4:+49654550 None:intergenic
AACCAGTTGGCAGGATGCCT+GGG 0.431096 1_4:-49654531 Msa0167710:CDS
CGGATTTCTTCAACTGGAGC+AGG 0.434396 1_4:+49654556 None:intergenic
TTGAATCTTCAAAGCCACTA+TGG 0.437657 1_4:-49654835 Msa0167710:CDS
GCTGAGGCTATTGGTTTAGT+TGG 0.437987 1_4:-49655477 Msa0167710:CDS
CCAAAGAAACCTGCTTCTCC+CGG 0.438181 1_4:+49652179 None:intergenic
TTGAAAGACTTTGAAATCCA+TGG 0.438972 1_4:-49654973 Msa0167710:CDS
CTTTGGGCAGAGGAAGAAAT+GGG 0.450705 1_4:+49656130 None:intergenic
GAAGCTTTATTATACTCTAA+AGG 0.451944 1_4:-49655507 Msa0167710:CDS
CAATTATGCTTCGGCATCAA+AGG 0.453952 1_4:-49655178 Msa0167710:CDS
GGTCCGAGGTTGAAAAGGTC+CGG 0.457513 1_4:-49652198 Msa0167710:CDS
TTGAGCATGCCTCACATTTG+AGG 0.457552 1_4:+49654900 None:intergenic
GTTGACACTTACGAGCTTTG+TGG 0.462014 1_4:+49656338 None:intergenic
GTGCCTCTAATATCTTAAGC+AGG 0.467275 1_4:-49655119 Msa0167710:CDS
GCCGTTTCATGATTGGAAGA+AGG 0.469531 1_4:+49654592 None:intergenic
ACCTCAAAACAGCATTGTCC+TGG 0.471683 1_4:+49654133 None:intergenic
TAATAAAGAACATACTGATT+CGG 0.472142 1_4:-49655403 Msa0167710:CDS
TCCCCAGGCATCCTGCCAAC+TGG 0.474677 1_4:+49654529 None:intergenic
TGAAAAGGTCCGGGAGAAGC+AGG 0.475416 1_4:-49652188 Msa0167710:CDS
CCGTTTCATGATTGGAAGAA+GGG 0.475600 1_4:+49654593 None:intergenic
ATCAGTTCTAAAGTTAAGTC+AGG 0.481166 1_4:-49655255 Msa0167710:CDS
ACTCTCAGCAGGATCGGGAT+GGG 0.483817 1_4:+49654672 None:intergenic
TTATCTCGGGCTGTGCCTCT+CGG 0.487582 1_4:-49655303 Msa0167710:CDS
GGATCTGAAGAGCTTTCAGC+TGG 0.490377 1_4:-49655627 Msa0167710:CDS
TGTTCACTCTCAGCAGGATC+GGG 0.492452 1_4:+49654667 None:intergenic
TAAGAATCTCATTGACCAGC+AGG 0.494809 1_4:-49654338 Msa0167710:CDS
AAGTCAGGCACTGATCAATC+TGG 0.498645 1_4:-49655240 Msa0167710:CDS
CACTCTCAGCAGGATCGGGA+TGG 0.499067 1_4:+49654671 None:intergenic
AAAATCTGATCTCTTATCTC+GGG 0.500552 1_4:-49655316 Msa0167710:CDS
CCCTTCTTCCAATCATGAAA+CGG 0.500904 1_4:-49654593 Msa0167710:CDS
TGTTCTTAAAGAGCCAAAAT+GGG 0.502493 1_4:-49654872 Msa0167710:CDS
GTTCTTCAGAAGATTAAAGA+AGG 0.507702 1_4:-49654364 Msa0167710:CDS
ATTCAGGTCCGAGGTTGAAA+AGG 0.511149 1_4:-49652203 Msa0167710:intron
GCAGGTTTCTTTGGAAAACA+AGG 0.518116 1_4:-49652170 Msa0167710:CDS
TTGATAGAACAGTTGACTCC+AGG 0.519777 1_4:-49652051 Msa0167710:CDS
AGTGGTGTTTATGCGCTACT+TGG 0.521605 1_4:-49655432 Msa0167710:CDS
AAATCCGTCAACCAGTTGGC+AGG 0.521805 1_4:-49654540 Msa0167710:CDS
TACTGATTCGGCCAATAAAG+AGG 0.522006 1_4:-49655391 Msa0167710:CDS
CTCTCAGCAGGATCGGGATG+GGG 0.523175 1_4:+49654673 None:intergenic
TTGGAAAGTTCAGACTTCCA+TGG 0.523368 1_4:+49654956 None:intergenic
TGCAGAATACAATTATGCTT+CGG 0.524753 1_4:-49655187 Msa0167710:CDS
GCATCCTGCCAACTGGTTGA+CGG 0.530318 1_4:+49654536 None:intergenic
GAAGAAGGGATATCTGAAGC+AGG 0.532449 1_4:+49654607 None:intergenic
GTCTTGATGAGTTCAAGAGC+AGG 0.532869 1_4:-49655281 Msa0167710:CDS
TCTTGTCATTCATCCTAAGC+AGG 0.535212 1_4:-49656299 Msa0167710:five_prime_UTR
TAGGAAGACAAGACGAGGGA+GGG 0.536721 1_4:-49656270 Msa0167710:five_prime_UTR
TGAACATGTTCACTCTCAGC+AGG 0.537283 1_4:+49654661 None:intergenic
AGGAAAACCCAAGCATCTGT+TGG 0.540357 1_4:+49654937 None:intergenic
ATGTTCACTCTCAGCAGGAT+CGG 0.540435 1_4:+49654666 None:intergenic
TAATTGTATTCTGCACCTCC+AGG 0.543624 1_4:+49655195 None:intergenic
GTCCGAGGTTGAAAAGGTCC+GGG 0.545030 1_4:-49652197 Msa0167710:CDS
AATAAAATTCGGAACCATAG+TGG 0.546010 1_4:+49654821 None:intergenic
AATTATGCTTCGGCATCAAA+GGG 0.548259 1_4:-49655177 Msa0167710:CDS
GCAGTTGGATCATATACTCC+AGG 0.548439 1_4:-49654151 Msa0167710:CDS
GGTGTTTATGCGCTACTTGG+TGG 0.549516 1_4:-49655429 Msa0167710:CDS
TTATTATACTCTAAAGGTGG+AGG 0.555825 1_4:-49655501 Msa0167710:CDS
CTCTAAAGGTGGAGGTGCTG+AGG 0.557047 1_4:-49655493 Msa0167710:CDS
AATCTATTTGCATCTGGAGA+AGG 0.558454 1_4:-49654721 Msa0167710:CDS
TCACTCACTGATAGAGAAAG+TGG 0.559066 1_4:-49655450 Msa0167710:CDS
AGAACTTTCAGAAGAAACCT+TGG 0.560587 1_4:-49655040 Msa0167710:CDS
AGGAAGACAAGACGAGGGAG+GGG 0.564035 1_4:-49656269 Msa0167710:five_prime_UTR
GAGATCACGTAAAGCTCGCA+TGG 0.568513 1_4:-49656185 Msa0167710:CDS
AAAATGGAAACTTTGGGCAG+AGG 0.570292 1_4:+49656120 None:intergenic
CTCGTGCAGGCAAAATATGC+TGG 0.571157 1_4:-49654207 Msa0167710:intron
CATCCTAAGCAGGCAGCAGT+AGG 0.571636 1_4:-49656289 Msa0167710:five_prime_UTR
CAAATGTGAGGCATGCTCAA+AGG 0.572982 1_4:-49654897 Msa0167710:CDS
ATGGGGTTATGAAGAAGAGA+AGG 0.573199 1_4:+49656148 None:intergenic
TTCTTAATAATTCAGGTCCG+AGG 0.575561 1_4:-49652212 Msa0167710:intron
TTAAATTTAGGTCTAGAGTA+CGG 0.576670 1_4:+49654476 None:intergenic
AGCTTATGGGTCACTCACAC+AGG 0.578454 1_4:-49656049 Msa0167710:intron
AGGGATATCTGAAGCAGGGT+GGG 0.581632 1_4:+49654612 None:intergenic
GGTTCCAATAAAGAAGGGAA+AGG 0.581843 1_4:-49655141 Msa0167710:CDS
ATCCTCCAGCATCCTCTCAA+CGG 0.584718 1_4:+49654762 None:intergenic
AATTTCTCCTCCACAGAACA+CGG 0.585511 1_4:+49655072 None:intergenic
TGATAGAACAGTTGACTCCA+GGG 0.585751 1_4:-49652050 Msa0167710:CDS
GTAATACATAGATTGGAGCC+TGG 0.586563 1_4:-49655213 Msa0167710:CDS
GCTACCCACACAAAATTCCC+TGG 0.586908 1_4:+49652033 None:intergenic
TACGCACTATAACATCCTGC+TGG 0.589181 1_4:+49654323 None:intergenic
CAGGTTTCTTTGGAAAACAA+GGG 0.589978 1_4:-49652169 Msa0167710:CDS
ATCTTGAGAACAGTATCCCC+AGG 0.590052 1_4:+49654514 None:intergenic
TGCCTCTAATATCTTAAGCA+GGG 0.597312 1_4:-49655118 Msa0167710:CDS
GAGTATAATAAAGCTTCTGA+CGG 0.598371 1_4:+49655513 None:intergenic
GCTTTATTATACTCTAAAGG+TGG 0.599801 1_4:-49655504 Msa0167710:CDS
TTGAGGCAGTAAAATTCCCA+AGG 0.599930 1_4:+49654917 None:intergenic
GGATGCCGTTGAGAGGATGC+TGG 0.600025 1_4:-49654767 Msa0167710:CDS
ACACTTACGAGCTTTGTGGT+TGG 0.603026 1_4:+49656342 None:intergenic
TCTTCGAAATCCGTGTTCTG+TGG 0.607278 1_4:-49655082 Msa0167710:CDS
CAGATATTTCACAAAATCCG+TGG 0.609098 1_4:+49655580 None:intergenic
AGCAGTAGGAAGACAAGACG+AGG 0.610538 1_4:-49656275 Msa0167710:five_prime_UTR
TTGGTGTGGATGCCGTTGAG+AGG 0.612570 1_4:-49654774 Msa0167710:CDS
TCGAAATCCGTGTTCTGTGG+AGG 0.612846 1_4:-49655079 Msa0167710:CDS
GAAGAAATCCGTCAACCAGT+TGG 0.616669 1_4:-49654544 Msa0167710:CDS
GTAGGAAGACAAGACGAGGG+AGG 0.637603 1_4:-49656271 Msa0167710:five_prime_UTR
TCTTGATGAGTTCAAGAGCA+GGG 0.640578 1_4:-49655280 Msa0167710:CDS
TATTTCTACAGTATCTACCA+AGG 0.649127 1_4:+49655023 None:intergenic
ACCAGTTGGCAGGATGCCTG+GGG 0.649182 1_4:-49654530 Msa0167710:CDS
AATTGGAATCAAGTTAACCA+CGG 0.654455 1_4:-49655597 Msa0167710:CDS
AAGAAGGGATATCTGAAGCA+GGG 0.657621 1_4:+49654608 None:intergenic
AAGGGATATCTGAAGCAGGG+TGG 0.666617 1_4:+49654611 None:intergenic
ACTCAATAATAGAAGAAACC+AGG 0.679333 1_4:+49652006 None:intergenic
GCAGTAGGAAGACAAGACGA+GGG 0.683870 1_4:-49656274 Msa0167710:five_prime_UTR
ATTGTGCAGAAGTCGAGTCG+CGG 0.701757 1_4:+49656222 None:intergenic
ATACATAGATTGGAGCCTGG+AGG 0.724979 1_4:-49655210 Msa0167710:CDS
TGCCGTTGAGAGGATGCTGG+AGG 0.725275 1_4:-49654764 Msa0167710:CDS
TTGAACTCATCAAGACCGAG+AGG 0.728710 1_4:+49655288 None:intergenic
TTTGGGCAGAGGAAGAAATG+GGG 0.747784 1_4:+49656131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATATAATAATGGAAA+TGG + chr1_4:49654526-49654545 None:intergenic 10.0%
!! TAAGGAATTAAATATAATAA+TGG + chr1_4:49654532-49654551 None:intergenic 10.0%
!!! ATTTTTTTTCTTAATAATTC+AGG - chr1_4:49656102-49656121 Msa0167710:CDS 10.0%
!!! TTTATTATTTTGTATGTAGA+TGG - chr1_4:49652673-49652692 Msa0167710:intron 15.0%
!!! AAACCAAAATTTCAATTTTT+AGG - chr1_4:49655094-49655113 Msa0167710:CDS 15.0%
!!! TTTTATTGAAATAATGAGAA+AGG - chr1_4:49655749-49655768 Msa0167710:intron 15.0%
!!! TTCTATTTCTTAATAAACTA+TGG + chr1_4:49656018-49656037 None:intergenic 15.0%
!! TTGATAAAAATGGAAACTTT+GGG + chr1_4:49652210-49652229 None:intergenic 20.0%
!!! TAATAAAGAACATACTGATT+CGG - chr1_4:49652918-49652937 Msa0167710:intron 20.0%
!!! AGACCTAAATTTAATTGTTT+TGG - chr1_4:49653854-49653873 Msa0167710:intron 20.0%
!!! TAAATTTAATTGTTTTGGAG+CGG - chr1_4:49653859-49653878 Msa0167710:intron 20.0%
!! TTTGAAAATATTGACATATC+TGG + chr1_4:49653904-49653923 None:intergenic 20.0%
!! TACCTAGTGTAAATATTAAT+TGG - chr1_4:49654279-49654298 Msa0167710:intron 20.0%
!! ACATGTGAATAAACTATATT+GGG + chr1_4:49654319-49654338 None:intergenic 20.0%
!! TACATGTGAATAAACTATAT+TGG + chr1_4:49654320-49654339 None:intergenic 20.0%
!! TATTCACATGTATTAGAATA+AGG - chr1_4:49654328-49654347 Msa0167710:intron 20.0%
!!! CATCCTAAAAATTGAAATTT+TGG + chr1_4:49655100-49655119 None:intergenic 20.0%
!!! CAAAATTTCAATTTTTAGGA+TGG - chr1_4:49655098-49655117 Msa0167710:CDS 20.0%
!! ATTGTAATTTCTGTAACTTA+TGG + chr1_4:49655162-49655181 None:intergenic 20.0%
!! TTAAAAATTGTGTGATTCAA+AGG - chr1_4:49655223-49655242 Msa0167710:CDS 20.0%
!! ATCATAAATGATCTATCAAT+CGG + chr1_4:49655295-49655314 None:intergenic 20.0%
!! ATTGATAGATCATTTATGAT+TGG - chr1_4:49655295-49655314 Msa0167710:CDS 20.0%
!! TTGATAGATCATTTATGATT+GGG - chr1_4:49655296-49655315 Msa0167710:CDS 20.0%
!! TTGTAAATAGATATGTGTTA+GGG + chr1_4:49655636-49655655 None:intergenic 20.0%
!! TATTTCTTAATAAACTATGG+TGG + chr1_4:49656015-49656034 None:intergenic 20.0%
!! GTTGATAAAAATGGAAACTT+TGG + chr1_4:49652211-49652230 None:intergenic 25.0%
! AACAAATTAACCACTAACAT+CGG + chr1_4:49652368-49652387 None:intergenic 25.0%
!! CACAAAGTGTTATCAAATAA+AGG - chr1_4:49652469-49652488 Msa0167710:intron 25.0%
! TTATCAAATAAAGGCTATAG+TGG - chr1_4:49652478-49652497 Msa0167710:intron 25.0%
! AAAAATAATTGGATGACAGA+TGG + chr1_4:49652613-49652632 None:intergenic 25.0%
! TGCAACGAAGTAAAAATAAT+TGG + chr1_4:49652624-49652643 None:intergenic 25.0%
!!! GAAGCTTTATTATACTCTAA+AGG - chr1_4:49652814-49652833 Msa0167710:intron 25.0%
! AAAAATCTGATCTCTTATCT+CGG - chr1_4:49653004-49653023 Msa0167710:intron 25.0%
! TTTATTGGAACCTAAAACTT+TGG + chr1_4:49653172-49653191 None:intergenic 25.0%
!!! TTTTAGGTTCCAATAAAGAA+GGG - chr1_4:49653175-49653194 Msa0167710:intron 25.0%
! GATTTCAAAGTCTTTCAAAT+TGG + chr1_4:49653346-49653365 None:intergenic 25.0%
! ACTTAGTGTGCAATAAAATT+CGG + chr1_4:49653514-49653533 None:intergenic 25.0%
!! TTAAATTTAGGTCTAGAGTA+CGG + chr1_4:49653848-49653867 None:intergenic 25.0%
! GCTCCAAAACAATTAAATTT+AGG + chr1_4:49653860-49653879 None:intergenic 25.0%
! ATTTCCAAAATGAATAGAGT+AGG + chr1_4:49654085-49654104 None:intergenic 25.0%
! ACATGTATTAGAATAAGGAT+GGG - chr1_4:49654333-49654352 Msa0167710:CDS 25.0%
! AGTTTACTGATAGATGAATA+AGG + chr1_4:49654550-49654569 None:intergenic 25.0%
! ATTCATCTATCAGTAAACTT+CGG - chr1_4:49654551-49654570 Msa0167710:CDS 25.0%
! AAACTATATAAGCACAACTT+AGG + chr1_4:49654972-49654991 None:intergenic 25.0%
! TAAGTTGTGCTTATATAGTT+TGG - chr1_4:49654971-49654990 Msa0167710:CDS 25.0%
! AAGTTGTGCTTATATAGTTT+GGG - chr1_4:49654972-49654991 Msa0167710:CDS 25.0%
!!! ACTTTACAAGTTGGTTTTAT+AGG - chr1_4:49655003-49655022 Msa0167710:CDS 25.0%
!! TGGATCTTAAAATTTGAGTT+GGG + chr1_4:49655039-49655058 None:intergenic 25.0%
!! AAATTTCTGAAAGAAAGACA+AGG - chr1_4:49655321-49655340 Msa0167710:CDS 25.0%
! GTTGTAAATAGATATGTGTT+AGG + chr1_4:49655637-49655656 None:intergenic 25.0%
! TTACTTTGTAGTCATTTGTT+AGG - chr1_4:49655695-49655714 Msa0167710:intron 25.0%
!! ACTCTTTTCAATTCAATTCT+GGG + chr1_4:49655723-49655742 None:intergenic 25.0%
! AATAAACCTCCTATTTATAC+AGG - chr1_4:49655879-49655898 Msa0167710:intron 25.0%
! TTGACATTATTTACTGTTTC+TGG - chr1_4:49655938-49655957 Msa0167710:intron 25.0%
! AATAAACTATGGTGGTAAAA+AGG + chr1_4:49656007-49656026 None:intergenic 25.0%
! CTACGAACTATATAGTTATT+TGG - chr1_4:49656072-49656091 Msa0167710:CDS 25.0%
!! TTTCATTGATTGCTTTGTTA+CGG - chr1_4:49656204-49656223 Msa0167710:exon 25.0%
!! GCAGAGAAAGTTGATAAAAA+TGG + chr1_4:49652220-49652239 None:intergenic 30.0%
!!! TTTCTCTGCTTTTTGATTTG+TGG - chr1_4:49652231-49652250 Msa0167710:intron 30.0%
!!! TTCTCTGCTTTTTGATTTGT+GGG - chr1_4:49652232-49652251 Msa0167710:intron 30.0%
AGAAACAAAACAAGAAAGGA+TGG + chr1_4:49652315-49652334 None:intergenic 30.0%
GGAAAGAAACAAAACAAGAA+AGG + chr1_4:49652319-49652338 None:intergenic 30.0%
!! GTTAGTGGTTAATTTGTTCT+CGG - chr1_4:49652370-49652389 Msa0167710:intron 30.0%
!! ATAGTCTTATACTTTGTGGT+TGG - chr1_4:49652518-49652537 Msa0167710:intron 30.0%
!! TAGTCTTATACTTTGTGGTT+GGG - chr1_4:49652519-49652538 Msa0167710:intron 30.0%
GAGCAAGTATTTATAAGTGA+GGG + chr1_4:49652587-49652606 None:intergenic 30.0%
TGAGCAAGTATTTATAAGTG+AGG + chr1_4:49652588-49652607 None:intergenic 30.0%
CATACGTCTCATAATCTTAT+TGG - chr1_4:49652646-49652665 Msa0167710:intron 30.0%
TTTCAGCTGGATTATCAAAT+TGG - chr1_4:49652707-49652726 Msa0167710:intron 30.0%
AATTGGAATCAAGTTAACCA+CGG - chr1_4:49652724-49652743 Msa0167710:intron 30.0%
GAGTATAATAAAGCTTCTGA+CGG + chr1_4:49652811-49652830 None:intergenic 30.0%
! GCTTTATTATACTCTAAAGG+TGG - chr1_4:49652817-49652836 Msa0167710:intron 30.0%
! TTATTATACTCTAAAGGTGG+AGG - chr1_4:49652820-49652839 Msa0167710:intron 30.0%
AAAATCTGATCTCTTATCTC+GGG - chr1_4:49653005-49653024 Msa0167710:intron 30.0%
!! ATCAGTTCTAAAGTTAAGTC+AGG - chr1_4:49653066-49653085 Msa0167710:intron 30.0%
! TGGAAGTGTAATACATAGAT+TGG - chr1_4:49653101-49653120 Msa0167710:intron 30.0%
TGCAGAATACAATTATGCTT+CGG - chr1_4:49653134-49653153 Msa0167710:intron 30.0%
!!! GTTTTAGGTTCCAATAAAGA+AGG - chr1_4:49653174-49653193 Msa0167710:intron 30.0%
! TATTTCTACAGTATCTACCA+AGG + chr1_4:49653301-49653320 None:intergenic 30.0%
!! TTGAAAGACTTTGAAATCCA+TGG - chr1_4:49653348-49653367 Msa0167710:intron 30.0%
TTGTTCTTAAAGAGCCAAAA+TGG - chr1_4:49653448-49653467 Msa0167710:intron 30.0%
TGTTCTTAAAGAGCCAAAAT+GGG - chr1_4:49653449-49653468 Msa0167710:intron 30.0%
! TTTAGGTATCTTACCCATTT+TGG + chr1_4:49653465-49653484 None:intergenic 30.0%
AATAAAATTCGGAACCATAG+TGG + chr1_4:49653503-49653522 None:intergenic 30.0%
!! CTAAGTGTTGTTGAAGTTTT+TGG - chr1_4:49653528-49653547 Msa0167710:intron 30.0%
! TATTGACATATCTGGAGTTT+AGG + chr1_4:49653896-49653915 None:intergenic 30.0%
GTTCTTCAGAAGATTAAAGA+AGG - chr1_4:49653957-49653976 Msa0167710:intron 30.0%
! TATAGTGCGTAATTTTGTCA+TGG - chr1_4:49654010-49654029 Msa0167710:intron 30.0%
! CTATCCTACTCTATTCATTT+TGG - chr1_4:49654078-49654097 Msa0167710:intron 30.0%
GGCCAATTAATATTTACACT+AGG + chr1_4:49654284-49654303 None:intergenic 30.0%
CACATGTATTAGAATAAGGA+TGG - chr1_4:49654332-49654351 Msa0167710:CDS 30.0%
TCAATAGAAGTTCACTTGTT+GGG + chr1_4:49654727-49654746 None:intergenic 30.0%
TTCAATAGAAGTTCACTTGT+TGG + chr1_4:49654728-49654747 None:intergenic 30.0%
AGTGAACTTCTATTGAAACA+TGG - chr1_4:49654731-49654750 Msa0167710:CDS 30.0%
!!! TTGGTTTTATAGGTTGAGTT+AGG - chr1_4:49655013-49655032 Msa0167710:CDS 30.0%
CTGGATCTTAAAATTTGAGT+TGG + chr1_4:49655040-49655059 None:intergenic 30.0%
TTATTTACGAACTGATGCAT+CGG - chr1_4:49655134-49655153 Msa0167710:CDS 30.0%
TGAAAGAAAGACAAGGAAAA+AGG - chr1_4:49655328-49655347 Msa0167710:CDS 30.0%
GAAAGAAAGACAAGGAAAAA+GGG - chr1_4:49655329-49655348 Msa0167710:CDS 30.0%
AGAATCAGAAAAAACCCAAT+TGG - chr1_4:49655526-49655545 Msa0167710:CDS 30.0%
TAATTTCCTAAACGACTCTT+AGG - chr1_4:49655603-49655622 Msa0167710:CDS 30.0%
! CACTCTTTTCAATTCAATTC+TGG + chr1_4:49655724-49655743 None:intergenic 30.0%
GTAGGATATCCTGTATAAAT+AGG + chr1_4:49655891-49655910 None:intergenic 30.0%
TGTATGACGATAATACACTT+AGG - chr1_4:49655911-49655930 Msa0167710:intron 30.0%
ACTCAATAATAGAAGAAACC+AGG + chr1_4:49656318-49656337 None:intergenic 30.0%
TACTCTTTCTCTTCAGCTTA+TGG - chr1_4:49652258-49652277 Msa0167710:intron 35.0%
ACTCTTTCTCTTCAGCTTAT+GGG - chr1_4:49652259-49652278 Msa0167710:intron 35.0%
!!! GTTTTGTTTCTTTCCATTCC+AGG - chr1_4:49652324-49652343 Msa0167710:intron 35.0%
TTGTTGGTATCATAGCATAG+CGG - chr1_4:49652405-49652424 Msa0167710:intron 35.0%
!! CAGCATAGTCTTATACTTTG+TGG - chr1_4:49652514-49652533 Msa0167710:intron 35.0%
CAGATATTTCACAAAATCCG+TGG + chr1_4:49652744-49652763 None:intergenic 35.0%
AACTACATGCTCCTCTTTAT+TGG + chr1_4:49652944-49652963 None:intergenic 35.0%
AATTATGCTTCGGCATCAAA+GGG - chr1_4:49653144-49653163 Msa0167710:intron 35.0%
TGCCTCTAATATCTTAAGCA+GGG - chr1_4:49653203-49653222 Msa0167710:intron 35.0%
ATCCCTGCTTAAGATATTAG+AGG + chr1_4:49653208-49653227 None:intergenic 35.0%
AGAACTTTCAGAAGAAACCT+TGG - chr1_4:49653281-49653300 Msa0167710:intron 35.0%
! ATTTTACTGCCTCAAATGTG+AGG - chr1_4:49653412-49653431 Msa0167710:intron 35.0%
!! GGCTTTGAAGATTCAACTTT+AGG + chr1_4:49653482-49653501 None:intergenic 35.0%
TTGAATCTTCAAAGCCACTA+TGG - chr1_4:49653486-49653505 Msa0167710:intron 35.0%
!!! TGTTGTTGAAGTTTTTGGTG+TGG - chr1_4:49653533-49653552 Msa0167710:intron 35.0%
CAAGACAATCTATTTGCATC+TGG - chr1_4:49653594-49653613 Msa0167710:intron 35.0%
AATCTATTTGCATCTGGAGA+AGG - chr1_4:49653600-49653619 Msa0167710:intron 35.0%
! TGTTCAGCAAAACACTTTTG+AGG - chr1_4:49653677-49653696 Msa0167710:intron 35.0%
! GTTCAGCAAAACACTTTTGA+GGG - chr1_4:49653678-49653697 Msa0167710:intron 35.0%
! TTCAGCAAAACACTTTTGAG+GGG - chr1_4:49653679-49653698 Msa0167710:intron 35.0%
!!! AATTGTTTTGGAGCGGTATA+TGG - chr1_4:49653866-49653885 Msa0167710:intron 35.0%
ATTTCTGACCATATGAACTC+AGG - chr1_4:49654239-49654258 Msa0167710:intron 35.0%
TATTAATTGGCCCAATAGAC+AGG - chr1_4:49654292-49654311 Msa0167710:intron 35.0%
ATTAATTGGCCCAATAGACA+GGG - chr1_4:49654293-49654312 Msa0167710:intron 35.0%
GATGGGCATTTATTGCTAAT+CGG - chr1_4:49654350-49654369 Msa0167710:CDS 35.0%
TGCTAATCGGTTGTTTATGT+TGG - chr1_4:49654363-49654382 Msa0167710:CDS 35.0%
TTGTTTATGTTGGAGAGACT+AGG - chr1_4:49654373-49654392 Msa0167710:CDS 35.0%
ACAGAGACAATTTCACAACA+GGG + chr1_4:49654464-49654483 None:intergenic 35.0%
AACAGAGACAATTTCACAAC+AGG + chr1_4:49654465-49654484 None:intergenic 35.0%
TGTTGTGAAATTGTCTCTGT+TGG - chr1_4:49654464-49654483 Msa0167710:CDS 35.0%
GCACTATTATTGAACTTCTC+TGG + chr1_4:49654498-49654517 None:intergenic 35.0%
!!! TTTTTTTGTCACTGACCAGT+CGG + chr1_4:49654652-49654671 None:intergenic 35.0%
AAATAGTGAACTACTGACAG+TGG - chr1_4:49654670-49654689 Msa0167710:CDS 35.0%
AATAGTGAACTACTGACAGT+GGG - chr1_4:49654671-49654690 Msa0167710:CDS 35.0%
GATGTATTCAAACTTGACGT+TGG - chr1_4:49654815-49654834 Msa0167710:CDS 35.0%
ATTTAGTCCTACATTGCCTA+AGG - chr1_4:49654946-49654965 Msa0167710:CDS 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr1_4:49655429-49655448 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr1_4:49655428-49655447 Msa0167710:CDS 35.0%
TCTGATTCTTTCCTTAACCT+TGG + chr1_4:49655515-49655534 None:intergenic 35.0%
! GAAAAGTGGATTCTTTCCTT+GGG + chr1_4:49655559-49655578 None:intergenic 35.0%
! TGAAAAGTGGATTCTTTCCT+TGG + chr1_4:49655560-49655579 None:intergenic 35.0%
!! GGAAAGAATCCACTTTTCAA+CGG - chr1_4:49655561-49655580 Msa0167710:CDS 35.0%
!! GAAAGAATCCACTTTTCAAC+GGG - chr1_4:49655562-49655581 Msa0167710:CDS 35.0%
GAGGTTTATTGAGTTAGAGA+GGG + chr1_4:49655869-49655888 None:intergenic 35.0%
GGATATCCTGTATAAATAGG+AGG + chr1_4:49655888-49655907 None:intergenic 35.0%
GTGTATTATCGTCATACAGT+AGG + chr1_4:49655909-49655928 None:intergenic 35.0%
TTCTTAATAATTCAGGTCCG+AGG - chr1_4:49656109-49656128 Msa0167710:CDS 35.0%
! CAGGTTTCTTTGGAAAACAA+GGG - chr1_4:49656152-49656171 Msa0167710:CDS 35.0%
TCTTGTCATTCATCCTAAGC+AGG - chr1_4:49652022-49652041 Msa0167710:CDS 40.0%
ATGGGGTTATGAAGAAGAGA+AGG + chr1_4:49652176-49652195 None:intergenic 40.0%
AAAATGGAAACTTTGGGCAG+AGG + chr1_4:49652204-49652223 None:intergenic 40.0%
!! GGTTAATTTGTTCTCGGATG+AGG - chr1_4:49652376-49652395 Msa0167710:intron 40.0%
!! TAATTTGTTCTCGGATGAGG+AGG - chr1_4:49652379-49652398 Msa0167710:intron 40.0%
! AATTTGTTCTCGGATGAGGA+GGG - chr1_4:49652380-49652399 Msa0167710:intron 40.0%
TTAACTCAACCCCAACAAAC+CGG - chr1_4:49652543-49652562 Msa0167710:intron 40.0%
TCACTCACTGATAGAGAAAG+TGG - chr1_4:49652871-49652890 Msa0167710:intron 40.0%
!! TACTGATTCGGCCAATAAAG+AGG - chr1_4:49652930-49652949 Msa0167710:intron 40.0%
TCTTGATGAGTTCAAGAGCA+GGG - chr1_4:49653041-49653060 Msa0167710:intron 40.0%
GTAATACATAGATTGGAGCC+TGG - chr1_4:49653108-49653127 Msa0167710:intron 40.0%
TAATTGTATTCTGCACCTCC+AGG + chr1_4:49653129-49653148 None:intergenic 40.0%
CAATTATGCTTCGGCATCAA+AGG - chr1_4:49653143-49653162 Msa0167710:intron 40.0%
! TCAAAGGGAGCCAAAGTTTT+AGG - chr1_4:49653159-49653178 Msa0167710:intron 40.0%
GGTTCCAATAAAGAAGGGAA+AGG - chr1_4:49653180-49653199 Msa0167710:intron 40.0%
GTGCCTCTAATATCTTAAGC+AGG - chr1_4:49653202-49653221 Msa0167710:intron 40.0%
AATTTCTCCTCCACAGAACA+CGG + chr1_4:49653252-49653271 None:intergenic 40.0%
TTGGAAAGTTCAGACTTCCA+TGG + chr1_4:49653368-49653387 None:intergenic 40.0%
TGAACTTTCCAACAGATGCT+TGG - chr1_4:49653376-49653395 Msa0167710:intron 40.0%
GAACTTTCCAACAGATGCTT+GGG - chr1_4:49653377-49653396 Msa0167710:intron 40.0%
TTGAGGCAGTAAAATTCCCA+AGG + chr1_4:49653407-49653426 None:intergenic 40.0%
! AAGAAGGGATATCTGAAGCA+GGG + chr1_4:49653716-49653735 None:intergenic 40.0%
CCGTTTCATGATTGGAAGAA+GGG + chr1_4:49653731-49653750 None:intergenic 40.0%
CCCTTCTTCCAATCATGAAA+CGG - chr1_4:49653728-49653747 Msa0167710:intron 40.0%
! ACTGTTTGCCGTTTCATGAT+TGG + chr1_4:49653739-49653758 None:intergenic 40.0%
TAAGAATCTCATTGACCAGC+AGG - chr1_4:49653983-49654002 Msa0167710:intron 40.0%
ATGCTGGTGATCTCAATTCT+TGG - chr1_4:49654130-49654149 Msa0167710:intron 40.0%
GTCTCAAGTTTCTTTGCAGT+TGG - chr1_4:49654155-49654174 Msa0167710:CDS 40.0%
AATGAGCTCCTGAGTTCATA+TGG + chr1_4:49654250-49654269 None:intergenic 40.0%
TATATTGGGCCCTGTCTATT+GGG + chr1_4:49654305-49654324 None:intergenic 40.0%
CAGAGACAATTTCACAACAG+GGG + chr1_4:49654463-49654482 None:intergenic 40.0%
CATCTATCAGTAAACTTCGG+AGG - chr1_4:49654554-49654573 Msa0167710:CDS 40.0%
GAACTCCGATAGAAAGACTA+AGG + chr1_4:49654618-49654637 None:intergenic 40.0%
!!! TTTTTTGTCACTGACCAGTC+GGG + chr1_4:49654651-49654670 None:intergenic 40.0%
CAGAATAAACTAGCCAGATC+TGG - chr1_4:49654701-49654720 Msa0167710:CDS 40.0%
ATAAGCACAACTTAGGCCTT+AGG + chr1_4:49654965-49654984 None:intergenic 40.0%
GCTGTACTCACTTTACAAGT+TGG - chr1_4:49654994-49655013 Msa0167710:CDS 40.0%
CAGAAGCTCGTCATCAAAAT+CGG + chr1_4:49655069-49655088 None:intergenic 40.0%
TTCAAAGGCTCTGCTGATAT+TGG - chr1_4:49655238-49655257 Msa0167710:CDS 40.0%
ATTGGTACTCCCTCGAAAAA+CGG - chr1_4:49655256-49655275 Msa0167710:CDS 40.0%
CGTACAATACACCAAATGGT+GGG + chr1_4:49655403-49655422 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr1_4:49655434-49655453 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr1_4:49655435-49655454 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr1_4:49655479-49655498 None:intergenic 40.0%
! ACTGTTTTCCCGTTGAAAAG+TGG + chr1_4:49655573-49655592 None:intergenic 40.0%
AGTACACCTAAGAGTCGTTT+AGG + chr1_4:49655612-49655631 None:intergenic 40.0%
AGTTAGCTACTTAGCTGAAG+TGG + chr1_4:49655671-49655690 None:intergenic 40.0%
AGTAGTGACTCTTTGTGAAG+GGG + chr1_4:49655815-49655834 None:intergenic 40.0%
GAGTAGTGACTCTTTGTGAA+GGG + chr1_4:49655816-49655835 None:intergenic 40.0%
AGAGTAGTGACTCTTTGTGA+AGG + chr1_4:49655817-49655836 None:intergenic 40.0%
GGAGGTTTATTGAGTTAGAG+AGG + chr1_4:49655870-49655889 None:intergenic 40.0%
! GGTCATTGCTCTAAGTTTAG+TGG - chr1_4:49655959-49655978 Msa0167710:intron 40.0%
! GCAGGTTTCTTTGGAAAACA+AGG - chr1_4:49656151-49656170 Msa0167710:CDS 40.0%
! TGCTTTGTTACGGCTATCTT+TGG - chr1_4:49656214-49656233 Msa0167710:five_prime_UTR 40.0%
GTTACGGCTATCTTTGGATA+TGG - chr1_4:49656220-49656239 Msa0167710:five_prime_UTR 40.0%
! TTGATAGAACAGTTGACTCC+AGG - chr1_4:49656270-49656289 Msa0167710:five_prime_UTR 40.0%
! TGATAGAACAGTTGACTCCA+GGG - chr1_4:49656271-49656290 Msa0167710:five_prime_UTR 40.0%
! ACACTTACGAGCTTTGTGGT+TGG + chr1_4:49651982-49652001 None:intergenic 45.0%
GTTGACACTTACGAGCTTTG+TGG + chr1_4:49651986-49652005 None:intergenic 45.0%
ACGTAAAGCTCGCATGGAAT+TGG - chr1_4:49652142-49652161 Msa0167710:CDS 45.0%
TTTGGGCAGAGGAAGAAATG+GGG + chr1_4:49652193-49652212 None:intergenic 45.0%
CTTTGGGCAGAGGAAGAAAT+GGG + chr1_4:49652194-49652213 None:intergenic 45.0%
ACTTTGGGCAGAGGAAGAAA+TGG + chr1_4:49652195-49652214 None:intergenic 45.0%
GTTTCTTTCCATTCCAGGCA+TGG - chr1_4:49652329-49652348 Msa0167710:intron 45.0%
GACTTATAGGCCGATGTTAG+TGG - chr1_4:49652355-49652374 Msa0167710:intron 45.0%
!! GCTGAGGCTATTGGTTTAGT+TGG - chr1_4:49652844-49652863 Msa0167710:intron 45.0%
AGTGGTGTTTATGCGCTACT+TGG - chr1_4:49652889-49652908 Msa0167710:intron 45.0%
TTGAACTCATCAAGACCGAG+AGG + chr1_4:49653036-49653055 None:intergenic 45.0%
GTCTTGATGAGTTCAAGAGC+AGG - chr1_4:49653040-49653059 Msa0167710:intron 45.0%
!! AAGTCAGGCACTGATCAATC+TGG - chr1_4:49653081-49653100 Msa0167710:intron 45.0%
ATACATAGATTGGAGCCTGG+AGG - chr1_4:49653111-49653130 Msa0167710:intron 45.0%
GGCACCTTTCCCTTCTTTAT+TGG + chr1_4:49653187-49653206 None:intergenic 45.0%
TCTTCGAAATCCGTGTTCTG+TGG - chr1_4:49653239-49653258 Msa0167710:intron 45.0%
AGGAAAACCCAAGCATCTGT+TGG + chr1_4:49653387-49653406 None:intergenic 45.0%
! ACAGATGCTTGGGTTTTCCT+TGG - chr1_4:49653387-49653406 Msa0167710:intron 45.0%
! CAGATGCTTGGGTTTTCCTT+GGG - chr1_4:49653388-49653407 Msa0167710:intron 45.0%
TTGAGCATGCCTCACATTTG+AGG + chr1_4:49653424-49653443 None:intergenic 45.0%
CAAATGTGAGGCATGCTCAA+AGG - chr1_4:49653424-49653443 Msa0167710:intron 45.0%
ATGTTCACTCTCAGCAGGAT+CGG + chr1_4:49653658-49653677 None:intergenic 45.0%
TGAACATGTTCACTCTCAGC+AGG + chr1_4:49653663-49653682 None:intergenic 45.0%
! GAAGAAGGGATATCTGAAGC+AGG + chr1_4:49653717-49653736 None:intergenic 45.0%
GCCGTTTCATGATTGGAAGA+AGG + chr1_4:49653732-49653751 None:intergenic 45.0%
!! GGTTGACGGATTTCTTCAAC+TGG + chr1_4:49653774-49653793 None:intergenic 45.0%
GAAGAAATCCGTCAACCAGT+TGG - chr1_4:49653777-49653796 Msa0167710:intron 45.0%
ATCTTGAGAACAGTATCCCC+AGG + chr1_4:49653810-49653829 None:intergenic 45.0%
TACGCACTATAACATCCTGC+TGG + chr1_4:49654001-49654020 None:intergenic 45.0%
AAATGATTCGTTGCTCGTGC+AGG - chr1_4:49654101-49654120 Msa0167710:intron 45.0%
GCAGTTGGATCATATACTCC+AGG - chr1_4:49654170-49654189 Msa0167710:CDS 45.0%
!!! TCCAGGACAATGCTGTTTTG+AGG - chr1_4:49654187-49654206 Msa0167710:CDS 45.0%
ACCTCAAAACAGCATTGTCC+TGG + chr1_4:49654191-49654210 None:intergenic 45.0%
CTATATTGGGCCCTGTCTAT+TGG + chr1_4:49654306-49654325 None:intergenic 45.0%
AGAGACTAGGCTCGAATTAG+AGG - chr1_4:49654386-49654405 Msa0167710:CDS 45.0%
CCGATAGAAAGACTAAGGCA+GGG + chr1_4:49654613-49654632 None:intergenic 45.0%
! CCCTGCCTTAGTCTTTCTAT+CGG - chr1_4:49654610-49654629 Msa0167710:CDS 45.0%
TCCGATAGAAAGACTAAGGC+AGG + chr1_4:49654614-49654633 None:intergenic 45.0%
GGAGACTACAACTGCAACAA+AGG + chr1_4:49654896-49654915 None:intergenic 45.0%
! AGTCTCCAGCACCATTGTTT+TGG - chr1_4:49654909-49654928 Msa0167710:CDS 45.0%
! GTCTCCAGCACCATTGTTTT+GGG - chr1_4:49654910-49654929 Msa0167710:CDS 45.0%
!!! CACCATTGTTTTGGGTGTGA+GGG - chr1_4:49654918-49654937 Msa0167710:CDS 45.0%
!!! ACCATTGTTTTGGGTGTGAG+GGG - chr1_4:49654919-49654938 Msa0167710:CDS 45.0%
ACTTAGGCCTTAGGCAATGT+AGG + chr1_4:49654956-49654975 None:intergenic 45.0%
TCATCAAAATCGGCAGATGC+TGG + chr1_4:49655059-49655078 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG + chr1_4:49655404-49655423 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1_4:49655407-49655426 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr1_4:49655439-49655458 Msa0167710:CDS 45.0%
CCTTGGGAGCAAAACCAATT+GGG + chr1_4:49655543-49655562 None:intergenic 45.0%
TCCTTGGGAGCAAAACCAAT+TGG + chr1_4:49655544-49655563 None:intergenic 45.0%
TGAGAGAAATCTCTCCTCCA+AGG - chr1_4:49655785-49655804 Msa0167710:intron 45.0%
GAGAGAAATCTCTCCTCCAA+GGG - chr1_4:49655786-49655805 Msa0167710:intron 45.0%
ATTCAGGTCCGAGGTTGAAA+AGG - chr1_4:49656118-49656137 Msa0167710:CDS 45.0%
! TGACTCCAGGGAATTTTGTG+TGG - chr1_4:49656283-49656302 Msa0167710:five_prime_UTR 45.0%
! GACTCCAGGGAATTTTGTGT+GGG - chr1_4:49656284-49656303 Msa0167710:five_prime_UTR 45.0%
AGCAGTAGGAAGACAAGACG+AGG - chr1_4:49652046-49652065 Msa0167710:CDS 50.0%
GCAGTAGGAAGACAAGACGA+GGG - chr1_4:49652047-49652066 Msa0167710:CDS 50.0%
TAGGAAGACAAGACGAGGGA+GGG - chr1_4:49652051-49652070 Msa0167710:CDS 50.0%
ATTGTGCAGAAGTCGAGTCG+CGG + chr1_4:49652102-49652121 None:intergenic 50.0%
GAGATCACGTAAAGCTCGCA+TGG - chr1_4:49652136-49652155 Msa0167710:CDS 50.0%
AGCTTATGGGTCACTCACAC+AGG - chr1_4:49652272-49652291 Msa0167710:intron 50.0%
CTTTCCATTCCAGGCATGGT+AGG - chr1_4:49652333-49652352 Msa0167710:intron 50.0%
AAGTCCTACCATGCCTGGAA+TGG + chr1_4:49652340-49652359 None:intergenic 50.0%
CCTATAAGTCCTACCATGCC+TGG + chr1_4:49652345-49652364 None:intergenic 50.0%
CCAGGCATGGTAGGACTTAT+AGG - chr1_4:49652342-49652361 Msa0167710:intron 50.0%
TCGGATGAGGAGGGATTTGT+TGG - chr1_4:49652389-49652408 Msa0167710:intron 50.0%
GGATCTGAAGAGCTTTCAGC+TGG - chr1_4:49652694-49652713 Msa0167710:intron 50.0%
GGTGTTTATGCGCTACTTGG+TGG - chr1_4:49652892-49652911 Msa0167710:intron 50.0%
TCGAAATCCGTGTTCTGTGG+AGG - chr1_4:49653242-49653261 Msa0167710:intron 50.0%
ATCCTCCAGCATCCTCTCAA+CGG + chr1_4:49653562-49653581 None:intergenic 50.0%
TGTTCACTCTCAGCAGGATC+GGG + chr1_4:49653657-49653676 None:intergenic 50.0%
! AGGGATATCTGAAGCAGGGT+GGG + chr1_4:49653712-49653731 None:intergenic 50.0%
! AAGGGATATCTGAAGCAGGG+TGG + chr1_4:49653713-49653732 None:intergenic 50.0%
CGGATTTCTTCAACTGGAGC+AGG + chr1_4:49653768-49653787 None:intergenic 50.0%
AAATCCGTCAACCAGTTGGC+AGG - chr1_4:49653781-49653800 Msa0167710:intron 50.0%
CTCGTGCAGGCAAAATATGC+TGG - chr1_4:49654114-49654133 Msa0167710:intron 50.0%
GTTCTATGCTAAGACCCGAC+TGG - chr1_4:49654634-49654653 Msa0167710:CDS 50.0%
! TTCACTTGTTGGGCCAGATC+TGG + chr1_4:49654717-49654736 None:intergenic 50.0%
CACACCCAAAACAATGGTGC+TGG + chr1_4:49654917-49654936 None:intergenic 50.0%
!!! GCACCATTGTTTTGGGTGTG+AGG - chr1_4:49654917-49654936 Msa0167710:CDS 50.0%
TCCCCTCACACCCAAAACAA+TGG + chr1_4:49654923-49654942 None:intergenic 50.0%
GTACTCCCTCGAAAAACGGA+GGG - chr1_4:49655260-49655279 Msa0167710:CDS 50.0%
!! TCCAACCCTCCGTTTTTCGA+GGG + chr1_4:49655268-49655287 None:intergenic 50.0%
TCGAAAAACGGAGGGTTGGA+CGG - chr1_4:49655268-49655287 Msa0167710:CDS 50.0%
GACAAGGAAAAAGGGCAACC+TGG - chr1_4:49655337-49655356 Msa0167710:CDS 50.0%
AAGGTCACGAGTTCAAGTCC+TGG + chr1_4:49655460-49655479 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_4:49655495-49655514 Msa0167710:CDS 50.0%
TACCAGTTGCGCCAAGGTTA+AGG - chr1_4:49655501-49655520 Msa0167710:CDS 50.0%
TTCCTTAACCTTGGCGCAAC+TGG + chr1_4:49655506-49655525 None:intergenic 50.0%
!!! CCCAATTGGTTTTGCTCCCA+AGG - chr1_4:49655540-49655559 Msa0167710:CDS 50.0%
CTTTGTGAAGGGGAAACCCT+TGG + chr1_4:49655805-49655824 None:intergenic 50.0%
CCAAAGAAACCTGCTTCTCC+CGG + chr1_4:49656145-49656164 None:intergenic 50.0%
GCTACCCACACAAAATTCCC+TGG + chr1_4:49656291-49656310 None:intergenic 50.0%
TTTGTGTGGGTAGCTCTTCC+TGG - chr1_4:49656297-49656316 Msa0167710:five_prime_UTR 50.0%
CATCCTAAGCAGGCAGCAGT+AGG - chr1_4:49652032-49652051 Msa0167710:CDS 55.0%
CTTCCTACTGCTGCCTGCTT+AGG + chr1_4:49652038-49652057 None:intergenic 55.0%
GTAGGAAGACAAGACGAGGG+AGG - chr1_4:49652050-49652069 Msa0167710:CDS 55.0%
AGGAAGACAAGACGAGGGAG+GGG - chr1_4:49652052-49652071 Msa0167710:CDS 55.0%
!! CCTCACAAGCCGGTTTGTTG+GGG + chr1_4:49652555-49652574 None:intergenic 55.0%
!! GCCTCACAAGCCGGTTTGTT+GGG + chr1_4:49652556-49652575 None:intergenic 55.0%
GCAATCTTCGCCTCACAAGC+CGG + chr1_4:49652565-49652584 None:intergenic 55.0%
!! CTCTAAAGGTGGAGGTGCTG+AGG - chr1_4:49652828-49652847 Msa0167710:intron 55.0%
TTATCTCGGGCTGTGCCTCT+CGG - chr1_4:49653018-49653037 Msa0167710:intron 55.0%
TTGGTGTGGATGCCGTTGAG+AGG - chr1_4:49653547-49653566 Msa0167710:intron 55.0%
ACTCTCAGCAGGATCGGGAT+GGG + chr1_4:49653652-49653671 None:intergenic 55.0%
GCATCCTGCCAACTGGTTGA+CGG + chr1_4:49653788-49653807 None:intergenic 55.0%
AACCAGTTGGCAGGATGCCT+GGG - chr1_4:49653790-49653809 Msa0167710:intron 55.0%
AGAGGGGACTGCAATTCAGG+CGG + chr1_4:49654846-49654865 None:intergenic 55.0%
GCTAGAGGGGACTGCAATTC+AGG + chr1_4:49654849-49654868 None:intergenic 55.0%
AGCCACCTAAGTGCGGCATT+TGG - chr1_4:49654866-49654885 Msa0167710:CDS 55.0%
GCCACCTAAGTGCGGCATTT+GGG - chr1_4:49654867-49654886 Msa0167710:CDS 55.0%
ACCCAAATGCCGCACTTAGG+TGG + chr1_4:49654871-49654890 None:intergenic 55.0%
GCAACCCAAATGCCGCACTT+AGG + chr1_4:49654874-49654893 None:intergenic 55.0%
GGTACTCCCTCGAAAAACGG+AGG - chr1_4:49655259-49655278 Msa0167710:CDS 55.0%
TCCCTCGAAAAACGGAGGGT+TGG - chr1_4:49655264-49655283 Msa0167710:CDS 55.0%
!! GTCCAACCCTCCGTTTTTCG+AGG + chr1_4:49655269-49655288 None:intergenic 55.0%
TGTGAAGGGGAAACCCTTGG+AGG + chr1_4:49655802-49655821 None:intergenic 55.0%
GGTCCGAGGTTGAAAAGGTC+CGG - chr1_4:49656123-49656142 Msa0167710:CDS 55.0%
GTCCGAGGTTGAAAAGGTCC+GGG - chr1_4:49656124-49656143 Msa0167710:CDS 55.0%
! CTCCCGGACCTTTTCAACCT+CGG + chr1_4:49656129-49656148 None:intergenic 55.0%
TGAAAAGGTCCGGGAGAAGC+AGG - chr1_4:49656133-49656152 Msa0167710:CDS 55.0%
CCGGGAGAAGCAGGTTTCTT+TGG - chr1_4:49656142-49656161 Msa0167710:CDS 55.0%
!! CCCCAACAAACCGGCTTGTG+AGG - chr1_4:49652552-49652571 Msa0167710:intron 60.0%
!! CGCCTCACAAGCCGGTTTGT+TGG + chr1_4:49652557-49652576 None:intergenic 60.0%
!! GGTGGAGGTGCTGAGGCTAT+TGG - chr1_4:49652835-49652854 Msa0167710:intron 60.0%
GGATGCCGTTGAGAGGATGC+TGG - chr1_4:49653554-49653573 Msa0167710:intron 60.0%
TGCCGTTGAGAGGATGCTGG+AGG - chr1_4:49653557-49653576 Msa0167710:intron 60.0%
CTCTCAGCAGGATCGGGATG+GGG + chr1_4:49653651-49653670 None:intergenic 60.0%
CACTCTCAGCAGGATCGGGA+TGG + chr1_4:49653653-49653672 None:intergenic 60.0%
CAACCAGTTGGCAGGATGCC+TGG - chr1_4:49653789-49653808 Msa0167710:intron 60.0%
ACCAGTTGGCAGGATGCCTG+GGG - chr1_4:49653791-49653810 Msa0167710:intron 60.0%
CCGCACTTAGGTGGCTAGAG+GGG + chr1_4:49654862-49654881 None:intergenic 60.0%
CCCCTCTAGCCACCTAAGTG+CGG - chr1_4:49654859-49654878 Msa0167710:CDS 60.0%
GCCGCACTTAGGTGGCTAGA+GGG + chr1_4:49654863-49654882 None:intergenic 60.0%
TGCCGCACTTAGGTGGCTAG+AGG + chr1_4:49654864-49654883 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG - chr1_4:49655363-49655382 Msa0167710:CDS 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr1_4:49655364-49655383 Msa0167710:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr1_4:49655391-49655410 None:intergenic 60.0%
TCCCCAGGCATCCTGCCAAC+TGG + chr1_4:49653795-49653814 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+AGG + chr1_4:49655358-49655377 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr1_4:49655375-49655394 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr1_4:49655376-49655395 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr1_4:49655375-49655394 Msa0167710:CDS 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr1_4:49655376-49655395 Msa0167710:CDS 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr1_4:49655389-49655408 Msa0167710:CDS 65.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1_4:49655369-49655388 Msa0167710:CDS 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr1_4:49655370-49655389 Msa0167710:CDS 70.0%
CGCATACGCAGGGTCCGGGA+AGG - chr1_4:49655374-49655393 Msa0167710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 49651965 49656378 49651965 ID=Msa0167710;Name=Msa0167710
chr1_4 mRNA 49651965 49656378 49651965 ID=Msa0167710-mRNA-1;Parent=Msa0167710;Name=Msa0167710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=166|1|1|1|1|1|4|8|605
chr1_4 exon 49651965 49652219 49651965 ID=Msa0167710-mRNA-1:exon:14643;Parent=Msa0167710-mRNA-1
chr1_4 exon 49654135 49654220 49654135 ID=Msa0167710-mRNA-1:exon:14642;Parent=Msa0167710-mRNA-1
chr1_4 exon 49654330 49655651 49654330 ID=Msa0167710-mRNA-1:exon:14641;Parent=Msa0167710-mRNA-1
chr1_4 exon 49656050 49656378 49656050 ID=Msa0167710-mRNA-1:exon:14640;Parent=Msa0167710-mRNA-1
chr1_4 five_prime_UTR 49656213 49656378 49656213 ID=Msa0167710-mRNA-1:five_prime_utr;Parent=Msa0167710-mRNA-1
chr1_4 CDS 49656050 49656212 49656050 ID=Msa0167710-mRNA-1:cds;Parent=Msa0167710-mRNA-1
chr1_4 CDS 49654330 49655651 49654330 ID=Msa0167710-mRNA-1:cds;Parent=Msa0167710-mRNA-1
chr1_4 CDS 49654135 49654220 49654135 ID=Msa0167710-mRNA-1:cds;Parent=Msa0167710-mRNA-1
chr1_4 CDS 49651973 49652219 49651973 ID=Msa0167710-mRNA-1:cds;Parent=Msa0167710-mRNA-1
chr1_4 three_prime_UTR 49651965 49651972 49651965 ID=Msa0167710-mRNA-1:three_prime_utr;Parent=Msa0167710-mRNA-1
Gene Sequence

>Msa0167710

ATGCAGAGATCACGTAAAGCTCGCATGGAATTGGAAAGAAGACCTTCTCTTCTTCATAACCCCATTTCTTCCTCTGCCCAAAGTTTCCATTTTTATCAACTTTCTCTGCTTTTTGATTTGTGGGTTTTACTCTTTCTCTTCAGCTTATGGGTCACTCACACAGATGGATCTGAAGAGCTTTCAGCTGGATTATCAAATTGGAATCAAGTTAACCACGGATTTTGTGAAATATCTGATACTGTTGATAAAAATTGTATTGAAGAAAGTGATGCTTGCGTTCCGTCAGAAGCTTTATTATACTCTAAAGGTGGAGGTGCTGAGGCTATTGGTTTAGTTGGTGAGTCACTCACTGATAGAGAAAGTGGTGTTTATGCGCTACTTGGTGGTTGTAATAAAGAACATACTGATTCGGCCAATAAAGAGGAGCATGTAGTTGAGAGTTCTGAATCTGCTGTCAAACATGAAAATGATGTCAAAAAATCTGATCTCTTATCTCGGGCTGTGCCTCTCGGTCTTGATGAGTTCAAGAGCAGGGCGATCAGTTCTAAAGTTAAGTCAGGCACTGATCAATCTGGAAGTGTAATACATAGATTGGAGCCTGGAGGTGCAGAATACAATTATGCTTCGGCATCAAAGGGAGCCAAAGTTTTAGGTTCCAATAAAGAAGGGAAAGGTGCCTCTAATATCTTAAGCAGGGATAAAGACAAGTATCTTCGAAATCCGTGTTCTGTGGAGGAGAAATTTGTCATCATAGAACTTTCAGAAGAAACCTTGGTAGATACTGTAGAAATAGCTAATTTTGAACATCACTCTTCCAATTTGAAAGACTTTGAAATCCATGGAAGTCTGAACTTTCCAACAGATGCTTGGGTTTTCCTTGGGAATTTTACTGCCTCAAATGTGAGGCATGCTCAAAGGTTTGTTCTTAAAGAGCCAAAATGGGTAAGATACCTAAAGTTGAATCTTCAAAGCCACTATGGTTCCGAATTTTATTGCACACTAAGTGTTGTTGAAGTTTTTGGTGTGGATGCCGTTGAGAGGATGCTGGAGGATTTAATTAGTACTCAAGACAATCTATTTGCATCTGGAGAAGGCAATGATGATAAGAAGATAGTATCACCCCATCCCGATCCTGCTGAGAGTGAACATGTTCAGCAAAACACTTTTGAGGGGATGAATTCCCACCCTGCTTCAGATATCCCTTCTTCCAATCATGAAACGGCAAACAGTAATGTTCCTGCTCCAGTTGAAGAAATCCGTCAACCAGTTGGCAGGATGCCTGGGGATACTGTTCTCAAGATTCTAATGCAGAAAGTCCGTACTCTAGACCTAAATTTAATTGTTTTGGAGCGGTATATGGAAGACCTAAACTCCAGATATGTCAATATTTTCAAAGAGTACAGCAAAGACATAGAAGAAACAGATGTAGTTCTTCAGAAGATTAAAGAAGGCATTAAGAATCTCATTGACCAGCAGGATGTTATAGCAAAATATGCTGGTGATCTCAATTCTTGGAAGTCTCAAGTTTCTTTGCAGTTGGATCATATACTCCAGGACAATGCTGTTTTGAGGTCCGAGGTTGAAAAGGTCCGGGAGAAGCAGGTTTCTTTGGAAAACAAGGGTGTGATTGTGTTTCTATTATGTTGTATTTTTTCATTGATTGCTTTGTTACGGCTATCTTTGGATATGGCTAAGAATGTTTATAGAGCACTTAGTGTTGATAGAACAGTTGACTCCAGGGAATTTTGTGTGGGTAGCTCTTCCTGGTTTCTTCTATTATTGAGTTGTATCATTATCATTTTCATATTAACCTTTTGA

Protein sequence

>Msa0167710

MQRSRKARMELERRPSLLHNPISSSAQSFHFYQLSLLFDLWVLLFLFSLWVTHTDGSEELSAGLSNWNQVNHGFCEISDTVDKNCIEESDACVPSEALLYSKGGGAEAIGLVGESLTDRESGVYALLGGCNKEHTDSANKEEHVVESSESAVKHENDVKKSDLLSRAVPLGLDEFKSRAISSKVKSGTDQSGSVIHRLEPGGAEYNYASASKGAKVLGSNKEGKGASNILSRDKDKYLRNPCSVEEKFVIIELSEETLVDTVEIANFEHHSSNLKDFEIHGSLNFPTDAWVFLGNFTASNVRHAQRFVLKEPKWVRYLKLNLQSHYGSEFYCTLSVVEVFGVDAVERMLEDLISTQDNLFASGEGNDDKKIVSPHPDPAESEHVQQNTFEGMNSHPASDIPSSNHETANSNVPAPVEEIRQPVGRMPGDTVLKILMQKVRTLDLNLIVLERYMEDLNSRYVNIFKEYSKDIEETDVVLQKIKEGIKNLIDQQDVIAKYAGDLNSWKSQVSLQLDHILQDNAVLRSEVEKVREKQVSLENKGVIVFLLCCIFSLIALLRLSLDMAKNVYRALSVDRTVDSREFCVGSSSWFLLLLSCIIIIFILTF*