Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0167710 | AFK42692.1 | 94.585 | 591 | 23 | 3 | 1 | 590 | 1 | 583 | 0.0 | 1132 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0167710 | sp|F4I8I0|SUN4_ARATH | 42.475 | 598 | 309 | 9 | 23 | 605 | 19 | 596 | 4.14e-150 | 448 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0167710 | I3SR00 | 94.585 | 591 | 23 | 3 | 1 | 590 | 1 | 583 | 0.0 | 1132 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0167710 | Msa0712860 | 0.809174 | 2.155356e-50 | -8.615850e-47 |
Msa0167710 | Msa0800480 | 0.808898 | 2.469316e-50 | -8.615850e-47 |
Msa0167710 | Msa1145450 | 0.881100 | 3.176553e-70 | -8.615850e-47 |
Msa0167710 | Msa1375200 | 0.911712 | 4.456108e-83 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0167710 | MtrunA17_Chr1g0183121 | 94.585 | 591 | 23 | 3 | 1 | 590 | 1 | 583 | 0.0 | 1130 |
Msa0167710 | MtrunA17_Chr4g0013761 | 81.186 | 590 | 103 | 4 | 1 | 585 | 1 | 587 | 0.0 | 947 |
Msa0167710 | MtrunA17_Chr3g0078011 | 61.238 | 614 | 203 | 13 | 1 | 604 | 1 | 589 | 0.0 | 697 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0167710 | AT1G71360.1 | 42.475 | 598 | 309 | 9 | 23 | 605 | 19 | 596 | 4.21e-151 | 448 |
Msa0167710 | AT1G71360.2 | 43.384 | 597 | 305 | 10 | 23 | 605 | 45 | 622 | 2.18e-150 | 447 |
Msa0167710 | AT1G22882.1 | 45.234 | 577 | 242 | 11 | 75 | 605 | 112 | 660 | 1.95e-145 | 436 |
Msa0167710 | AT4G23950.1 | 41.809 | 409 | 215 | 6 | 196 | 602 | 170 | 557 | 4.08e-95 | 303 |
Msa0167710 | AT4G23950.2 | 41.707 | 410 | 215 | 7 | 196 | 602 | 170 | 558 | 1.80e-93 | 298 |
Find 139 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTCTTTCTCTTCAGCTTA+TGG | 0.127257 | 1_4:-49656063 | Msa0167710:CDS |
TTTAGGTATCTTACCCATTT+TGG | 0.166001 | 1_4:+49654859 | None:intergenic |
GGCACCTTTCCCTTCTTTAT+TGG | 0.187268 | 1_4:+49655137 | None:intergenic |
AGACCTAAATTTAATTGTTT+TGG | 0.201241 | 1_4:-49654467 | Msa0167710:CDS |
CCGGGAGAAGCAGGTTTCTT+TGG | 0.240817 | 1_4:-49652179 | Msa0167710:CDS |
AACTACATGCTCCTCTTTAT+TGG | 0.244993 | 1_4:+49655380 | None:intergenic |
TTTCAGCTGGATTATCAAAT+TGG | 0.258814 | 1_4:-49655614 | Msa0167710:CDS |
ACTCTTTCTCTTCAGCTTAT+GGG | 0.261830 | 1_4:-49656062 | Msa0167710:CDS |
GCTCCAAAACAATTAAATTT+AGG | 0.263875 | 1_4:+49654464 | None:intergenic |
TTGTTCTTAAAGAGCCAAAA+TGG | 0.265261 | 1_4:-49654873 | Msa0167710:CDS |
TTTGTGTGGGTAGCTCTTCC+TGG | 0.271181 | 1_4:-49652024 | Msa0167710:CDS |
GGCTTTGAAGATTCAACTTT+AGG | 0.274884 | 1_4:+49654842 | None:intergenic |
TTTATTGGAACCTAAAACTT+TGG | 0.279402 | 1_4:+49655152 | None:intergenic |
ATCCCTGCTTAAGATATTAG+AGG | 0.285746 | 1_4:+49655116 | None:intergenic |
TGCTTTGTTACGGCTATCTT+TGG | 0.291860 | 1_4:-49652107 | Msa0167710:CDS |
TTTGAAAATATTGACATATC+TGG | 0.300686 | 1_4:+49654420 | None:intergenic |
GATTTCAAAGTCTTTCAAAT+TGG | 0.322234 | 1_4:+49654978 | None:intergenic |
GTTACGGCTATCTTTGGATA+TGG | 0.325038 | 1_4:-49652101 | Msa0167710:CDS |
TATTGACATATCTGGAGTTT+AGG | 0.333964 | 1_4:+49654428 | None:intergenic |
CAACCAGTTGGCAGGATGCC+TGG | 0.353646 | 1_4:-49654532 | Msa0167710:CDS |
CTTCCTACTGCTGCCTGCTT+AGG | 0.354545 | 1_4:+49656286 | None:intergenic |
ATGCTGGTGATCTCAATTCT+TGG | 0.382007 | 1_4:-49654191 | Msa0167710:CDS |
TTTCATTGATTGCTTTGTTA+CGG | 0.388387 | 1_4:-49652117 | Msa0167710:CDS |
ACTGTTTGCCGTTTCATGAT+TGG | 0.392357 | 1_4:+49654585 | None:intergenic |
ACGTAAAGCTCGCATGGAAT+TGG | 0.396219 | 1_4:-49656179 | Msa0167710:CDS |
GAACTTTCCAACAGATGCTT+GGG | 0.398646 | 1_4:-49654944 | Msa0167710:CDS |
ACTTAGTGTGCAATAAAATT+CGG | 0.412768 | 1_4:+49654810 | None:intergenic |
TGGAAGTGTAATACATAGAT+TGG | 0.414499 | 1_4:-49655220 | Msa0167710:CDS |
TGAACTTTCCAACAGATGCT+TGG | 0.423228 | 1_4:-49654945 | Msa0167710:CDS |
ACTTTGGGCAGAGGAAGAAA+TGG | 0.424463 | 1_4:+49656129 | None:intergenic |
GGTGGAGGTGCTGAGGCTAT+TGG | 0.424475 | 1_4:-49655486 | Msa0167710:CDS |
GTCTCAAGTTTCTTTGCAGT+TGG | 0.424631 | 1_4:-49654166 | Msa0167710:CDS |
CAAGACAATCTATTTGCATC+TGG | 0.428687 | 1_4:-49654727 | Msa0167710:CDS |
GGTTGACGGATTTCTTCAAC+TGG | 0.428942 | 1_4:+49654550 | None:intergenic |
AACCAGTTGGCAGGATGCCT+GGG | 0.431096 | 1_4:-49654531 | Msa0167710:CDS |
CGGATTTCTTCAACTGGAGC+AGG | 0.434396 | 1_4:+49654556 | None:intergenic |
TTGAATCTTCAAAGCCACTA+TGG | 0.437657 | 1_4:-49654835 | Msa0167710:CDS |
GCTGAGGCTATTGGTTTAGT+TGG | 0.437987 | 1_4:-49655477 | Msa0167710:CDS |
CCAAAGAAACCTGCTTCTCC+CGG | 0.438181 | 1_4:+49652179 | None:intergenic |
TTGAAAGACTTTGAAATCCA+TGG | 0.438972 | 1_4:-49654973 | Msa0167710:CDS |
CTTTGGGCAGAGGAAGAAAT+GGG | 0.450705 | 1_4:+49656130 | None:intergenic |
GAAGCTTTATTATACTCTAA+AGG | 0.451944 | 1_4:-49655507 | Msa0167710:CDS |
CAATTATGCTTCGGCATCAA+AGG | 0.453952 | 1_4:-49655178 | Msa0167710:CDS |
GGTCCGAGGTTGAAAAGGTC+CGG | 0.457513 | 1_4:-49652198 | Msa0167710:CDS |
TTGAGCATGCCTCACATTTG+AGG | 0.457552 | 1_4:+49654900 | None:intergenic |
GTTGACACTTACGAGCTTTG+TGG | 0.462014 | 1_4:+49656338 | None:intergenic |
GTGCCTCTAATATCTTAAGC+AGG | 0.467275 | 1_4:-49655119 | Msa0167710:CDS |
GCCGTTTCATGATTGGAAGA+AGG | 0.469531 | 1_4:+49654592 | None:intergenic |
ACCTCAAAACAGCATTGTCC+TGG | 0.471683 | 1_4:+49654133 | None:intergenic |
TAATAAAGAACATACTGATT+CGG | 0.472142 | 1_4:-49655403 | Msa0167710:CDS |
TCCCCAGGCATCCTGCCAAC+TGG | 0.474677 | 1_4:+49654529 | None:intergenic |
TGAAAAGGTCCGGGAGAAGC+AGG | 0.475416 | 1_4:-49652188 | Msa0167710:CDS |
CCGTTTCATGATTGGAAGAA+GGG | 0.475600 | 1_4:+49654593 | None:intergenic |
ATCAGTTCTAAAGTTAAGTC+AGG | 0.481166 | 1_4:-49655255 | Msa0167710:CDS |
ACTCTCAGCAGGATCGGGAT+GGG | 0.483817 | 1_4:+49654672 | None:intergenic |
TTATCTCGGGCTGTGCCTCT+CGG | 0.487582 | 1_4:-49655303 | Msa0167710:CDS |
GGATCTGAAGAGCTTTCAGC+TGG | 0.490377 | 1_4:-49655627 | Msa0167710:CDS |
TGTTCACTCTCAGCAGGATC+GGG | 0.492452 | 1_4:+49654667 | None:intergenic |
TAAGAATCTCATTGACCAGC+AGG | 0.494809 | 1_4:-49654338 | Msa0167710:CDS |
AAGTCAGGCACTGATCAATC+TGG | 0.498645 | 1_4:-49655240 | Msa0167710:CDS |
CACTCTCAGCAGGATCGGGA+TGG | 0.499067 | 1_4:+49654671 | None:intergenic |
AAAATCTGATCTCTTATCTC+GGG | 0.500552 | 1_4:-49655316 | Msa0167710:CDS |
CCCTTCTTCCAATCATGAAA+CGG | 0.500904 | 1_4:-49654593 | Msa0167710:CDS |
TGTTCTTAAAGAGCCAAAAT+GGG | 0.502493 | 1_4:-49654872 | Msa0167710:CDS |
GTTCTTCAGAAGATTAAAGA+AGG | 0.507702 | 1_4:-49654364 | Msa0167710:CDS |
ATTCAGGTCCGAGGTTGAAA+AGG | 0.511149 | 1_4:-49652203 | Msa0167710:intron |
GCAGGTTTCTTTGGAAAACA+AGG | 0.518116 | 1_4:-49652170 | Msa0167710:CDS |
TTGATAGAACAGTTGACTCC+AGG | 0.519777 | 1_4:-49652051 | Msa0167710:CDS |
AGTGGTGTTTATGCGCTACT+TGG | 0.521605 | 1_4:-49655432 | Msa0167710:CDS |
AAATCCGTCAACCAGTTGGC+AGG | 0.521805 | 1_4:-49654540 | Msa0167710:CDS |
TACTGATTCGGCCAATAAAG+AGG | 0.522006 | 1_4:-49655391 | Msa0167710:CDS |
CTCTCAGCAGGATCGGGATG+GGG | 0.523175 | 1_4:+49654673 | None:intergenic |
TTGGAAAGTTCAGACTTCCA+TGG | 0.523368 | 1_4:+49654956 | None:intergenic |
TGCAGAATACAATTATGCTT+CGG | 0.524753 | 1_4:-49655187 | Msa0167710:CDS |
GCATCCTGCCAACTGGTTGA+CGG | 0.530318 | 1_4:+49654536 | None:intergenic |
GAAGAAGGGATATCTGAAGC+AGG | 0.532449 | 1_4:+49654607 | None:intergenic |
GTCTTGATGAGTTCAAGAGC+AGG | 0.532869 | 1_4:-49655281 | Msa0167710:CDS |
TCTTGTCATTCATCCTAAGC+AGG | 0.535212 | 1_4:-49656299 | Msa0167710:five_prime_UTR |
TAGGAAGACAAGACGAGGGA+GGG | 0.536721 | 1_4:-49656270 | Msa0167710:five_prime_UTR |
TGAACATGTTCACTCTCAGC+AGG | 0.537283 | 1_4:+49654661 | None:intergenic |
AGGAAAACCCAAGCATCTGT+TGG | 0.540357 | 1_4:+49654937 | None:intergenic |
ATGTTCACTCTCAGCAGGAT+CGG | 0.540435 | 1_4:+49654666 | None:intergenic |
TAATTGTATTCTGCACCTCC+AGG | 0.543624 | 1_4:+49655195 | None:intergenic |
GTCCGAGGTTGAAAAGGTCC+GGG | 0.545030 | 1_4:-49652197 | Msa0167710:CDS |
AATAAAATTCGGAACCATAG+TGG | 0.546010 | 1_4:+49654821 | None:intergenic |
AATTATGCTTCGGCATCAAA+GGG | 0.548259 | 1_4:-49655177 | Msa0167710:CDS |
GCAGTTGGATCATATACTCC+AGG | 0.548439 | 1_4:-49654151 | Msa0167710:CDS |
GGTGTTTATGCGCTACTTGG+TGG | 0.549516 | 1_4:-49655429 | Msa0167710:CDS |
TTATTATACTCTAAAGGTGG+AGG | 0.555825 | 1_4:-49655501 | Msa0167710:CDS |
CTCTAAAGGTGGAGGTGCTG+AGG | 0.557047 | 1_4:-49655493 | Msa0167710:CDS |
AATCTATTTGCATCTGGAGA+AGG | 0.558454 | 1_4:-49654721 | Msa0167710:CDS |
TCACTCACTGATAGAGAAAG+TGG | 0.559066 | 1_4:-49655450 | Msa0167710:CDS |
AGAACTTTCAGAAGAAACCT+TGG | 0.560587 | 1_4:-49655040 | Msa0167710:CDS |
AGGAAGACAAGACGAGGGAG+GGG | 0.564035 | 1_4:-49656269 | Msa0167710:five_prime_UTR |
GAGATCACGTAAAGCTCGCA+TGG | 0.568513 | 1_4:-49656185 | Msa0167710:CDS |
AAAATGGAAACTTTGGGCAG+AGG | 0.570292 | 1_4:+49656120 | None:intergenic |
CTCGTGCAGGCAAAATATGC+TGG | 0.571157 | 1_4:-49654207 | Msa0167710:intron |
CATCCTAAGCAGGCAGCAGT+AGG | 0.571636 | 1_4:-49656289 | Msa0167710:five_prime_UTR |
CAAATGTGAGGCATGCTCAA+AGG | 0.572982 | 1_4:-49654897 | Msa0167710:CDS |
ATGGGGTTATGAAGAAGAGA+AGG | 0.573199 | 1_4:+49656148 | None:intergenic |
TTCTTAATAATTCAGGTCCG+AGG | 0.575561 | 1_4:-49652212 | Msa0167710:intron |
TTAAATTTAGGTCTAGAGTA+CGG | 0.576670 | 1_4:+49654476 | None:intergenic |
AGCTTATGGGTCACTCACAC+AGG | 0.578454 | 1_4:-49656049 | Msa0167710:intron |
AGGGATATCTGAAGCAGGGT+GGG | 0.581632 | 1_4:+49654612 | None:intergenic |
GGTTCCAATAAAGAAGGGAA+AGG | 0.581843 | 1_4:-49655141 | Msa0167710:CDS |
ATCCTCCAGCATCCTCTCAA+CGG | 0.584718 | 1_4:+49654762 | None:intergenic |
AATTTCTCCTCCACAGAACA+CGG | 0.585511 | 1_4:+49655072 | None:intergenic |
TGATAGAACAGTTGACTCCA+GGG | 0.585751 | 1_4:-49652050 | Msa0167710:CDS |
GTAATACATAGATTGGAGCC+TGG | 0.586563 | 1_4:-49655213 | Msa0167710:CDS |
GCTACCCACACAAAATTCCC+TGG | 0.586908 | 1_4:+49652033 | None:intergenic |
TACGCACTATAACATCCTGC+TGG | 0.589181 | 1_4:+49654323 | None:intergenic |
CAGGTTTCTTTGGAAAACAA+GGG | 0.589978 | 1_4:-49652169 | Msa0167710:CDS |
ATCTTGAGAACAGTATCCCC+AGG | 0.590052 | 1_4:+49654514 | None:intergenic |
TGCCTCTAATATCTTAAGCA+GGG | 0.597312 | 1_4:-49655118 | Msa0167710:CDS |
GAGTATAATAAAGCTTCTGA+CGG | 0.598371 | 1_4:+49655513 | None:intergenic |
GCTTTATTATACTCTAAAGG+TGG | 0.599801 | 1_4:-49655504 | Msa0167710:CDS |
TTGAGGCAGTAAAATTCCCA+AGG | 0.599930 | 1_4:+49654917 | None:intergenic |
GGATGCCGTTGAGAGGATGC+TGG | 0.600025 | 1_4:-49654767 | Msa0167710:CDS |
ACACTTACGAGCTTTGTGGT+TGG | 0.603026 | 1_4:+49656342 | None:intergenic |
TCTTCGAAATCCGTGTTCTG+TGG | 0.607278 | 1_4:-49655082 | Msa0167710:CDS |
CAGATATTTCACAAAATCCG+TGG | 0.609098 | 1_4:+49655580 | None:intergenic |
AGCAGTAGGAAGACAAGACG+AGG | 0.610538 | 1_4:-49656275 | Msa0167710:five_prime_UTR |
TTGGTGTGGATGCCGTTGAG+AGG | 0.612570 | 1_4:-49654774 | Msa0167710:CDS |
TCGAAATCCGTGTTCTGTGG+AGG | 0.612846 | 1_4:-49655079 | Msa0167710:CDS |
GAAGAAATCCGTCAACCAGT+TGG | 0.616669 | 1_4:-49654544 | Msa0167710:CDS |
GTAGGAAGACAAGACGAGGG+AGG | 0.637603 | 1_4:-49656271 | Msa0167710:five_prime_UTR |
TCTTGATGAGTTCAAGAGCA+GGG | 0.640578 | 1_4:-49655280 | Msa0167710:CDS |
TATTTCTACAGTATCTACCA+AGG | 0.649127 | 1_4:+49655023 | None:intergenic |
ACCAGTTGGCAGGATGCCTG+GGG | 0.649182 | 1_4:-49654530 | Msa0167710:CDS |
AATTGGAATCAAGTTAACCA+CGG | 0.654455 | 1_4:-49655597 | Msa0167710:CDS |
AAGAAGGGATATCTGAAGCA+GGG | 0.657621 | 1_4:+49654608 | None:intergenic |
AAGGGATATCTGAAGCAGGG+TGG | 0.666617 | 1_4:+49654611 | None:intergenic |
ACTCAATAATAGAAGAAACC+AGG | 0.679333 | 1_4:+49652006 | None:intergenic |
GCAGTAGGAAGACAAGACGA+GGG | 0.683870 | 1_4:-49656274 | Msa0167710:five_prime_UTR |
ATTGTGCAGAAGTCGAGTCG+CGG | 0.701757 | 1_4:+49656222 | None:intergenic |
ATACATAGATTGGAGCCTGG+AGG | 0.724979 | 1_4:-49655210 | Msa0167710:CDS |
TGCCGTTGAGAGGATGCTGG+AGG | 0.725275 | 1_4:-49654764 | Msa0167710:CDS |
TTGAACTCATCAAGACCGAG+AGG | 0.728710 | 1_4:+49655288 | None:intergenic |
TTTGGGCAGAGGAAGAAATG+GGG | 0.747784 | 1_4:+49656131 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAAATATAATAATGGAAA+TGG | + | chr1_4:49654526-49654545 | None:intergenic | 10.0% |
!! | TAAGGAATTAAATATAATAA+TGG | + | chr1_4:49654532-49654551 | None:intergenic | 10.0% |
!!! | ATTTTTTTTCTTAATAATTC+AGG | - | chr1_4:49656102-49656121 | Msa0167710:CDS | 10.0% |
!!! | TTTATTATTTTGTATGTAGA+TGG | - | chr1_4:49652673-49652692 | Msa0167710:intron | 15.0% |
!!! | AAACCAAAATTTCAATTTTT+AGG | - | chr1_4:49655094-49655113 | Msa0167710:CDS | 15.0% |
!!! | TTTTATTGAAATAATGAGAA+AGG | - | chr1_4:49655749-49655768 | Msa0167710:intron | 15.0% |
!!! | TTCTATTTCTTAATAAACTA+TGG | + | chr1_4:49656018-49656037 | None:intergenic | 15.0% |
!! | TTGATAAAAATGGAAACTTT+GGG | + | chr1_4:49652210-49652229 | None:intergenic | 20.0% |
!!! | TAATAAAGAACATACTGATT+CGG | - | chr1_4:49652918-49652937 | Msa0167710:intron | 20.0% |
!!! | AGACCTAAATTTAATTGTTT+TGG | - | chr1_4:49653854-49653873 | Msa0167710:intron | 20.0% |
!!! | TAAATTTAATTGTTTTGGAG+CGG | - | chr1_4:49653859-49653878 | Msa0167710:intron | 20.0% |
!! | TTTGAAAATATTGACATATC+TGG | + | chr1_4:49653904-49653923 | None:intergenic | 20.0% |
!! | TACCTAGTGTAAATATTAAT+TGG | - | chr1_4:49654279-49654298 | Msa0167710:intron | 20.0% |
!! | ACATGTGAATAAACTATATT+GGG | + | chr1_4:49654319-49654338 | None:intergenic | 20.0% |
!! | TACATGTGAATAAACTATAT+TGG | + | chr1_4:49654320-49654339 | None:intergenic | 20.0% |
!! | TATTCACATGTATTAGAATA+AGG | - | chr1_4:49654328-49654347 | Msa0167710:intron | 20.0% |
!!! | CATCCTAAAAATTGAAATTT+TGG | + | chr1_4:49655100-49655119 | None:intergenic | 20.0% |
!!! | CAAAATTTCAATTTTTAGGA+TGG | - | chr1_4:49655098-49655117 | Msa0167710:CDS | 20.0% |
!! | ATTGTAATTTCTGTAACTTA+TGG | + | chr1_4:49655162-49655181 | None:intergenic | 20.0% |
!! | TTAAAAATTGTGTGATTCAA+AGG | - | chr1_4:49655223-49655242 | Msa0167710:CDS | 20.0% |
!! | ATCATAAATGATCTATCAAT+CGG | + | chr1_4:49655295-49655314 | None:intergenic | 20.0% |
!! | ATTGATAGATCATTTATGAT+TGG | - | chr1_4:49655295-49655314 | Msa0167710:CDS | 20.0% |
!! | TTGATAGATCATTTATGATT+GGG | - | chr1_4:49655296-49655315 | Msa0167710:CDS | 20.0% |
!! | TTGTAAATAGATATGTGTTA+GGG | + | chr1_4:49655636-49655655 | None:intergenic | 20.0% |
!! | TATTTCTTAATAAACTATGG+TGG | + | chr1_4:49656015-49656034 | None:intergenic | 20.0% |
!! | GTTGATAAAAATGGAAACTT+TGG | + | chr1_4:49652211-49652230 | None:intergenic | 25.0% |
! | AACAAATTAACCACTAACAT+CGG | + | chr1_4:49652368-49652387 | None:intergenic | 25.0% |
!! | CACAAAGTGTTATCAAATAA+AGG | - | chr1_4:49652469-49652488 | Msa0167710:intron | 25.0% |
! | TTATCAAATAAAGGCTATAG+TGG | - | chr1_4:49652478-49652497 | Msa0167710:intron | 25.0% |
! | AAAAATAATTGGATGACAGA+TGG | + | chr1_4:49652613-49652632 | None:intergenic | 25.0% |
! | TGCAACGAAGTAAAAATAAT+TGG | + | chr1_4:49652624-49652643 | None:intergenic | 25.0% |
!!! | GAAGCTTTATTATACTCTAA+AGG | - | chr1_4:49652814-49652833 | Msa0167710:intron | 25.0% |
! | AAAAATCTGATCTCTTATCT+CGG | - | chr1_4:49653004-49653023 | Msa0167710:intron | 25.0% |
! | TTTATTGGAACCTAAAACTT+TGG | + | chr1_4:49653172-49653191 | None:intergenic | 25.0% |
!!! | TTTTAGGTTCCAATAAAGAA+GGG | - | chr1_4:49653175-49653194 | Msa0167710:intron | 25.0% |
! | GATTTCAAAGTCTTTCAAAT+TGG | + | chr1_4:49653346-49653365 | None:intergenic | 25.0% |
! | ACTTAGTGTGCAATAAAATT+CGG | + | chr1_4:49653514-49653533 | None:intergenic | 25.0% |
!! | TTAAATTTAGGTCTAGAGTA+CGG | + | chr1_4:49653848-49653867 | None:intergenic | 25.0% |
! | GCTCCAAAACAATTAAATTT+AGG | + | chr1_4:49653860-49653879 | None:intergenic | 25.0% |
! | ATTTCCAAAATGAATAGAGT+AGG | + | chr1_4:49654085-49654104 | None:intergenic | 25.0% |
! | ACATGTATTAGAATAAGGAT+GGG | - | chr1_4:49654333-49654352 | Msa0167710:CDS | 25.0% |
! | AGTTTACTGATAGATGAATA+AGG | + | chr1_4:49654550-49654569 | None:intergenic | 25.0% |
! | ATTCATCTATCAGTAAACTT+CGG | - | chr1_4:49654551-49654570 | Msa0167710:CDS | 25.0% |
! | AAACTATATAAGCACAACTT+AGG | + | chr1_4:49654972-49654991 | None:intergenic | 25.0% |
! | TAAGTTGTGCTTATATAGTT+TGG | - | chr1_4:49654971-49654990 | Msa0167710:CDS | 25.0% |
! | AAGTTGTGCTTATATAGTTT+GGG | - | chr1_4:49654972-49654991 | Msa0167710:CDS | 25.0% |
!!! | ACTTTACAAGTTGGTTTTAT+AGG | - | chr1_4:49655003-49655022 | Msa0167710:CDS | 25.0% |
!! | TGGATCTTAAAATTTGAGTT+GGG | + | chr1_4:49655039-49655058 | None:intergenic | 25.0% |
!! | AAATTTCTGAAAGAAAGACA+AGG | - | chr1_4:49655321-49655340 | Msa0167710:CDS | 25.0% |
! | GTTGTAAATAGATATGTGTT+AGG | + | chr1_4:49655637-49655656 | None:intergenic | 25.0% |
! | TTACTTTGTAGTCATTTGTT+AGG | - | chr1_4:49655695-49655714 | Msa0167710:intron | 25.0% |
!! | ACTCTTTTCAATTCAATTCT+GGG | + | chr1_4:49655723-49655742 | None:intergenic | 25.0% |
! | AATAAACCTCCTATTTATAC+AGG | - | chr1_4:49655879-49655898 | Msa0167710:intron | 25.0% |
! | TTGACATTATTTACTGTTTC+TGG | - | chr1_4:49655938-49655957 | Msa0167710:intron | 25.0% |
! | AATAAACTATGGTGGTAAAA+AGG | + | chr1_4:49656007-49656026 | None:intergenic | 25.0% |
! | CTACGAACTATATAGTTATT+TGG | - | chr1_4:49656072-49656091 | Msa0167710:CDS | 25.0% |
!! | TTTCATTGATTGCTTTGTTA+CGG | - | chr1_4:49656204-49656223 | Msa0167710:exon | 25.0% |
!! | GCAGAGAAAGTTGATAAAAA+TGG | + | chr1_4:49652220-49652239 | None:intergenic | 30.0% |
!!! | TTTCTCTGCTTTTTGATTTG+TGG | - | chr1_4:49652231-49652250 | Msa0167710:intron | 30.0% |
!!! | TTCTCTGCTTTTTGATTTGT+GGG | - | chr1_4:49652232-49652251 | Msa0167710:intron | 30.0% |
AGAAACAAAACAAGAAAGGA+TGG | + | chr1_4:49652315-49652334 | None:intergenic | 30.0% | |
GGAAAGAAACAAAACAAGAA+AGG | + | chr1_4:49652319-49652338 | None:intergenic | 30.0% | |
!! | GTTAGTGGTTAATTTGTTCT+CGG | - | chr1_4:49652370-49652389 | Msa0167710:intron | 30.0% |
!! | ATAGTCTTATACTTTGTGGT+TGG | - | chr1_4:49652518-49652537 | Msa0167710:intron | 30.0% |
!! | TAGTCTTATACTTTGTGGTT+GGG | - | chr1_4:49652519-49652538 | Msa0167710:intron | 30.0% |
GAGCAAGTATTTATAAGTGA+GGG | + | chr1_4:49652587-49652606 | None:intergenic | 30.0% | |
TGAGCAAGTATTTATAAGTG+AGG | + | chr1_4:49652588-49652607 | None:intergenic | 30.0% | |
CATACGTCTCATAATCTTAT+TGG | - | chr1_4:49652646-49652665 | Msa0167710:intron | 30.0% | |
TTTCAGCTGGATTATCAAAT+TGG | - | chr1_4:49652707-49652726 | Msa0167710:intron | 30.0% | |
AATTGGAATCAAGTTAACCA+CGG | - | chr1_4:49652724-49652743 | Msa0167710:intron | 30.0% | |
GAGTATAATAAAGCTTCTGA+CGG | + | chr1_4:49652811-49652830 | None:intergenic | 30.0% | |
! | GCTTTATTATACTCTAAAGG+TGG | - | chr1_4:49652817-49652836 | Msa0167710:intron | 30.0% |
! | TTATTATACTCTAAAGGTGG+AGG | - | chr1_4:49652820-49652839 | Msa0167710:intron | 30.0% |
AAAATCTGATCTCTTATCTC+GGG | - | chr1_4:49653005-49653024 | Msa0167710:intron | 30.0% | |
!! | ATCAGTTCTAAAGTTAAGTC+AGG | - | chr1_4:49653066-49653085 | Msa0167710:intron | 30.0% |
! | TGGAAGTGTAATACATAGAT+TGG | - | chr1_4:49653101-49653120 | Msa0167710:intron | 30.0% |
TGCAGAATACAATTATGCTT+CGG | - | chr1_4:49653134-49653153 | Msa0167710:intron | 30.0% | |
!!! | GTTTTAGGTTCCAATAAAGA+AGG | - | chr1_4:49653174-49653193 | Msa0167710:intron | 30.0% |
! | TATTTCTACAGTATCTACCA+AGG | + | chr1_4:49653301-49653320 | None:intergenic | 30.0% |
!! | TTGAAAGACTTTGAAATCCA+TGG | - | chr1_4:49653348-49653367 | Msa0167710:intron | 30.0% |
TTGTTCTTAAAGAGCCAAAA+TGG | - | chr1_4:49653448-49653467 | Msa0167710:intron | 30.0% | |
TGTTCTTAAAGAGCCAAAAT+GGG | - | chr1_4:49653449-49653468 | Msa0167710:intron | 30.0% | |
! | TTTAGGTATCTTACCCATTT+TGG | + | chr1_4:49653465-49653484 | None:intergenic | 30.0% |
AATAAAATTCGGAACCATAG+TGG | + | chr1_4:49653503-49653522 | None:intergenic | 30.0% | |
!! | CTAAGTGTTGTTGAAGTTTT+TGG | - | chr1_4:49653528-49653547 | Msa0167710:intron | 30.0% |
! | TATTGACATATCTGGAGTTT+AGG | + | chr1_4:49653896-49653915 | None:intergenic | 30.0% |
GTTCTTCAGAAGATTAAAGA+AGG | - | chr1_4:49653957-49653976 | Msa0167710:intron | 30.0% | |
! | TATAGTGCGTAATTTTGTCA+TGG | - | chr1_4:49654010-49654029 | Msa0167710:intron | 30.0% |
! | CTATCCTACTCTATTCATTT+TGG | - | chr1_4:49654078-49654097 | Msa0167710:intron | 30.0% |
GGCCAATTAATATTTACACT+AGG | + | chr1_4:49654284-49654303 | None:intergenic | 30.0% | |
CACATGTATTAGAATAAGGA+TGG | - | chr1_4:49654332-49654351 | Msa0167710:CDS | 30.0% | |
TCAATAGAAGTTCACTTGTT+GGG | + | chr1_4:49654727-49654746 | None:intergenic | 30.0% | |
TTCAATAGAAGTTCACTTGT+TGG | + | chr1_4:49654728-49654747 | None:intergenic | 30.0% | |
AGTGAACTTCTATTGAAACA+TGG | - | chr1_4:49654731-49654750 | Msa0167710:CDS | 30.0% | |
!!! | TTGGTTTTATAGGTTGAGTT+AGG | - | chr1_4:49655013-49655032 | Msa0167710:CDS | 30.0% |
CTGGATCTTAAAATTTGAGT+TGG | + | chr1_4:49655040-49655059 | None:intergenic | 30.0% | |
TTATTTACGAACTGATGCAT+CGG | - | chr1_4:49655134-49655153 | Msa0167710:CDS | 30.0% | |
TGAAAGAAAGACAAGGAAAA+AGG | - | chr1_4:49655328-49655347 | Msa0167710:CDS | 30.0% | |
GAAAGAAAGACAAGGAAAAA+GGG | - | chr1_4:49655329-49655348 | Msa0167710:CDS | 30.0% | |
AGAATCAGAAAAAACCCAAT+TGG | - | chr1_4:49655526-49655545 | Msa0167710:CDS | 30.0% | |
TAATTTCCTAAACGACTCTT+AGG | - | chr1_4:49655603-49655622 | Msa0167710:CDS | 30.0% | |
! | CACTCTTTTCAATTCAATTC+TGG | + | chr1_4:49655724-49655743 | None:intergenic | 30.0% |
GTAGGATATCCTGTATAAAT+AGG | + | chr1_4:49655891-49655910 | None:intergenic | 30.0% | |
TGTATGACGATAATACACTT+AGG | - | chr1_4:49655911-49655930 | Msa0167710:intron | 30.0% | |
ACTCAATAATAGAAGAAACC+AGG | + | chr1_4:49656318-49656337 | None:intergenic | 30.0% | |
TACTCTTTCTCTTCAGCTTA+TGG | - | chr1_4:49652258-49652277 | Msa0167710:intron | 35.0% | |
ACTCTTTCTCTTCAGCTTAT+GGG | - | chr1_4:49652259-49652278 | Msa0167710:intron | 35.0% | |
!!! | GTTTTGTTTCTTTCCATTCC+AGG | - | chr1_4:49652324-49652343 | Msa0167710:intron | 35.0% |
TTGTTGGTATCATAGCATAG+CGG | - | chr1_4:49652405-49652424 | Msa0167710:intron | 35.0% | |
!! | CAGCATAGTCTTATACTTTG+TGG | - | chr1_4:49652514-49652533 | Msa0167710:intron | 35.0% |
CAGATATTTCACAAAATCCG+TGG | + | chr1_4:49652744-49652763 | None:intergenic | 35.0% | |
AACTACATGCTCCTCTTTAT+TGG | + | chr1_4:49652944-49652963 | None:intergenic | 35.0% | |
AATTATGCTTCGGCATCAAA+GGG | - | chr1_4:49653144-49653163 | Msa0167710:intron | 35.0% | |
TGCCTCTAATATCTTAAGCA+GGG | - | chr1_4:49653203-49653222 | Msa0167710:intron | 35.0% | |
ATCCCTGCTTAAGATATTAG+AGG | + | chr1_4:49653208-49653227 | None:intergenic | 35.0% | |
AGAACTTTCAGAAGAAACCT+TGG | - | chr1_4:49653281-49653300 | Msa0167710:intron | 35.0% | |
! | ATTTTACTGCCTCAAATGTG+AGG | - | chr1_4:49653412-49653431 | Msa0167710:intron | 35.0% |
!! | GGCTTTGAAGATTCAACTTT+AGG | + | chr1_4:49653482-49653501 | None:intergenic | 35.0% |
TTGAATCTTCAAAGCCACTA+TGG | - | chr1_4:49653486-49653505 | Msa0167710:intron | 35.0% | |
!!! | TGTTGTTGAAGTTTTTGGTG+TGG | - | chr1_4:49653533-49653552 | Msa0167710:intron | 35.0% |
CAAGACAATCTATTTGCATC+TGG | - | chr1_4:49653594-49653613 | Msa0167710:intron | 35.0% | |
AATCTATTTGCATCTGGAGA+AGG | - | chr1_4:49653600-49653619 | Msa0167710:intron | 35.0% | |
! | TGTTCAGCAAAACACTTTTG+AGG | - | chr1_4:49653677-49653696 | Msa0167710:intron | 35.0% |
! | GTTCAGCAAAACACTTTTGA+GGG | - | chr1_4:49653678-49653697 | Msa0167710:intron | 35.0% |
! | TTCAGCAAAACACTTTTGAG+GGG | - | chr1_4:49653679-49653698 | Msa0167710:intron | 35.0% |
!!! | AATTGTTTTGGAGCGGTATA+TGG | - | chr1_4:49653866-49653885 | Msa0167710:intron | 35.0% |
ATTTCTGACCATATGAACTC+AGG | - | chr1_4:49654239-49654258 | Msa0167710:intron | 35.0% | |
TATTAATTGGCCCAATAGAC+AGG | - | chr1_4:49654292-49654311 | Msa0167710:intron | 35.0% | |
ATTAATTGGCCCAATAGACA+GGG | - | chr1_4:49654293-49654312 | Msa0167710:intron | 35.0% | |
GATGGGCATTTATTGCTAAT+CGG | - | chr1_4:49654350-49654369 | Msa0167710:CDS | 35.0% | |
TGCTAATCGGTTGTTTATGT+TGG | - | chr1_4:49654363-49654382 | Msa0167710:CDS | 35.0% | |
TTGTTTATGTTGGAGAGACT+AGG | - | chr1_4:49654373-49654392 | Msa0167710:CDS | 35.0% | |
ACAGAGACAATTTCACAACA+GGG | + | chr1_4:49654464-49654483 | None:intergenic | 35.0% | |
AACAGAGACAATTTCACAAC+AGG | + | chr1_4:49654465-49654484 | None:intergenic | 35.0% | |
TGTTGTGAAATTGTCTCTGT+TGG | - | chr1_4:49654464-49654483 | Msa0167710:CDS | 35.0% | |
GCACTATTATTGAACTTCTC+TGG | + | chr1_4:49654498-49654517 | None:intergenic | 35.0% | |
!!! | TTTTTTTGTCACTGACCAGT+CGG | + | chr1_4:49654652-49654671 | None:intergenic | 35.0% |
AAATAGTGAACTACTGACAG+TGG | - | chr1_4:49654670-49654689 | Msa0167710:CDS | 35.0% | |
AATAGTGAACTACTGACAGT+GGG | - | chr1_4:49654671-49654690 | Msa0167710:CDS | 35.0% | |
GATGTATTCAAACTTGACGT+TGG | - | chr1_4:49654815-49654834 | Msa0167710:CDS | 35.0% | |
ATTTAGTCCTACATTGCCTA+AGG | - | chr1_4:49654946-49654965 | Msa0167710:CDS | 35.0% | |
TCTTGTGTAAAAACAGGGTA+AGG | + | chr1_4:49655429-49655448 | None:intergenic | 35.0% | |
!!! | TTACCCTGTTTTTACACAAG+AGG | - | chr1_4:49655428-49655447 | Msa0167710:CDS | 35.0% |
TCTGATTCTTTCCTTAACCT+TGG | + | chr1_4:49655515-49655534 | None:intergenic | 35.0% | |
! | GAAAAGTGGATTCTTTCCTT+GGG | + | chr1_4:49655559-49655578 | None:intergenic | 35.0% |
! | TGAAAAGTGGATTCTTTCCT+TGG | + | chr1_4:49655560-49655579 | None:intergenic | 35.0% |
!! | GGAAAGAATCCACTTTTCAA+CGG | - | chr1_4:49655561-49655580 | Msa0167710:CDS | 35.0% |
!! | GAAAGAATCCACTTTTCAAC+GGG | - | chr1_4:49655562-49655581 | Msa0167710:CDS | 35.0% |
GAGGTTTATTGAGTTAGAGA+GGG | + | chr1_4:49655869-49655888 | None:intergenic | 35.0% | |
GGATATCCTGTATAAATAGG+AGG | + | chr1_4:49655888-49655907 | None:intergenic | 35.0% | |
GTGTATTATCGTCATACAGT+AGG | + | chr1_4:49655909-49655928 | None:intergenic | 35.0% | |
TTCTTAATAATTCAGGTCCG+AGG | - | chr1_4:49656109-49656128 | Msa0167710:CDS | 35.0% | |
! | CAGGTTTCTTTGGAAAACAA+GGG | - | chr1_4:49656152-49656171 | Msa0167710:CDS | 35.0% |
TCTTGTCATTCATCCTAAGC+AGG | - | chr1_4:49652022-49652041 | Msa0167710:CDS | 40.0% | |
ATGGGGTTATGAAGAAGAGA+AGG | + | chr1_4:49652176-49652195 | None:intergenic | 40.0% | |
AAAATGGAAACTTTGGGCAG+AGG | + | chr1_4:49652204-49652223 | None:intergenic | 40.0% | |
!! | GGTTAATTTGTTCTCGGATG+AGG | - | chr1_4:49652376-49652395 | Msa0167710:intron | 40.0% |
!! | TAATTTGTTCTCGGATGAGG+AGG | - | chr1_4:49652379-49652398 | Msa0167710:intron | 40.0% |
! | AATTTGTTCTCGGATGAGGA+GGG | - | chr1_4:49652380-49652399 | Msa0167710:intron | 40.0% |
TTAACTCAACCCCAACAAAC+CGG | - | chr1_4:49652543-49652562 | Msa0167710:intron | 40.0% | |
TCACTCACTGATAGAGAAAG+TGG | - | chr1_4:49652871-49652890 | Msa0167710:intron | 40.0% | |
!! | TACTGATTCGGCCAATAAAG+AGG | - | chr1_4:49652930-49652949 | Msa0167710:intron | 40.0% |
TCTTGATGAGTTCAAGAGCA+GGG | - | chr1_4:49653041-49653060 | Msa0167710:intron | 40.0% | |
GTAATACATAGATTGGAGCC+TGG | - | chr1_4:49653108-49653127 | Msa0167710:intron | 40.0% | |
TAATTGTATTCTGCACCTCC+AGG | + | chr1_4:49653129-49653148 | None:intergenic | 40.0% | |
CAATTATGCTTCGGCATCAA+AGG | - | chr1_4:49653143-49653162 | Msa0167710:intron | 40.0% | |
! | TCAAAGGGAGCCAAAGTTTT+AGG | - | chr1_4:49653159-49653178 | Msa0167710:intron | 40.0% |
GGTTCCAATAAAGAAGGGAA+AGG | - | chr1_4:49653180-49653199 | Msa0167710:intron | 40.0% | |
GTGCCTCTAATATCTTAAGC+AGG | - | chr1_4:49653202-49653221 | Msa0167710:intron | 40.0% | |
AATTTCTCCTCCACAGAACA+CGG | + | chr1_4:49653252-49653271 | None:intergenic | 40.0% | |
TTGGAAAGTTCAGACTTCCA+TGG | + | chr1_4:49653368-49653387 | None:intergenic | 40.0% | |
TGAACTTTCCAACAGATGCT+TGG | - | chr1_4:49653376-49653395 | Msa0167710:intron | 40.0% | |
GAACTTTCCAACAGATGCTT+GGG | - | chr1_4:49653377-49653396 | Msa0167710:intron | 40.0% | |
TTGAGGCAGTAAAATTCCCA+AGG | + | chr1_4:49653407-49653426 | None:intergenic | 40.0% | |
! | AAGAAGGGATATCTGAAGCA+GGG | + | chr1_4:49653716-49653735 | None:intergenic | 40.0% |
CCGTTTCATGATTGGAAGAA+GGG | + | chr1_4:49653731-49653750 | None:intergenic | 40.0% | |
CCCTTCTTCCAATCATGAAA+CGG | - | chr1_4:49653728-49653747 | Msa0167710:intron | 40.0% | |
! | ACTGTTTGCCGTTTCATGAT+TGG | + | chr1_4:49653739-49653758 | None:intergenic | 40.0% |
TAAGAATCTCATTGACCAGC+AGG | - | chr1_4:49653983-49654002 | Msa0167710:intron | 40.0% | |
ATGCTGGTGATCTCAATTCT+TGG | - | chr1_4:49654130-49654149 | Msa0167710:intron | 40.0% | |
GTCTCAAGTTTCTTTGCAGT+TGG | - | chr1_4:49654155-49654174 | Msa0167710:CDS | 40.0% | |
AATGAGCTCCTGAGTTCATA+TGG | + | chr1_4:49654250-49654269 | None:intergenic | 40.0% | |
TATATTGGGCCCTGTCTATT+GGG | + | chr1_4:49654305-49654324 | None:intergenic | 40.0% | |
CAGAGACAATTTCACAACAG+GGG | + | chr1_4:49654463-49654482 | None:intergenic | 40.0% | |
CATCTATCAGTAAACTTCGG+AGG | - | chr1_4:49654554-49654573 | Msa0167710:CDS | 40.0% | |
GAACTCCGATAGAAAGACTA+AGG | + | chr1_4:49654618-49654637 | None:intergenic | 40.0% | |
!!! | TTTTTTGTCACTGACCAGTC+GGG | + | chr1_4:49654651-49654670 | None:intergenic | 40.0% |
CAGAATAAACTAGCCAGATC+TGG | - | chr1_4:49654701-49654720 | Msa0167710:CDS | 40.0% | |
ATAAGCACAACTTAGGCCTT+AGG | + | chr1_4:49654965-49654984 | None:intergenic | 40.0% | |
GCTGTACTCACTTTACAAGT+TGG | - | chr1_4:49654994-49655013 | Msa0167710:CDS | 40.0% | |
CAGAAGCTCGTCATCAAAAT+CGG | + | chr1_4:49655069-49655088 | None:intergenic | 40.0% | |
TTCAAAGGCTCTGCTGATAT+TGG | - | chr1_4:49655238-49655257 | Msa0167710:CDS | 40.0% | |
ATTGGTACTCCCTCGAAAAA+CGG | - | chr1_4:49655256-49655275 | Msa0167710:CDS | 40.0% | |
CGTACAATACACCAAATGGT+GGG | + | chr1_4:49655403-49655422 | None:intergenic | 40.0% | |
CAGCCTCTTGTGTAAAAACA+GGG | + | chr1_4:49655434-49655453 | None:intergenic | 40.0% | |
ACAGCCTCTTGTGTAAAAAC+AGG | + | chr1_4:49655435-49655454 | None:intergenic | 40.0% | |
GTTGTTGTCATGTGACTGTA+AGG | + | chr1_4:49655479-49655498 | None:intergenic | 40.0% | |
! | ACTGTTTTCCCGTTGAAAAG+TGG | + | chr1_4:49655573-49655592 | None:intergenic | 40.0% |
AGTACACCTAAGAGTCGTTT+AGG | + | chr1_4:49655612-49655631 | None:intergenic | 40.0% | |
AGTTAGCTACTTAGCTGAAG+TGG | + | chr1_4:49655671-49655690 | None:intergenic | 40.0% | |
AGTAGTGACTCTTTGTGAAG+GGG | + | chr1_4:49655815-49655834 | None:intergenic | 40.0% | |
GAGTAGTGACTCTTTGTGAA+GGG | + | chr1_4:49655816-49655835 | None:intergenic | 40.0% | |
AGAGTAGTGACTCTTTGTGA+AGG | + | chr1_4:49655817-49655836 | None:intergenic | 40.0% | |
GGAGGTTTATTGAGTTAGAG+AGG | + | chr1_4:49655870-49655889 | None:intergenic | 40.0% | |
! | GGTCATTGCTCTAAGTTTAG+TGG | - | chr1_4:49655959-49655978 | Msa0167710:intron | 40.0% |
! | GCAGGTTTCTTTGGAAAACA+AGG | - | chr1_4:49656151-49656170 | Msa0167710:CDS | 40.0% |
! | TGCTTTGTTACGGCTATCTT+TGG | - | chr1_4:49656214-49656233 | Msa0167710:five_prime_UTR | 40.0% |
GTTACGGCTATCTTTGGATA+TGG | - | chr1_4:49656220-49656239 | Msa0167710:five_prime_UTR | 40.0% | |
! | TTGATAGAACAGTTGACTCC+AGG | - | chr1_4:49656270-49656289 | Msa0167710:five_prime_UTR | 40.0% |
! | TGATAGAACAGTTGACTCCA+GGG | - | chr1_4:49656271-49656290 | Msa0167710:five_prime_UTR | 40.0% |
! | ACACTTACGAGCTTTGTGGT+TGG | + | chr1_4:49651982-49652001 | None:intergenic | 45.0% |
GTTGACACTTACGAGCTTTG+TGG | + | chr1_4:49651986-49652005 | None:intergenic | 45.0% | |
ACGTAAAGCTCGCATGGAAT+TGG | - | chr1_4:49652142-49652161 | Msa0167710:CDS | 45.0% | |
TTTGGGCAGAGGAAGAAATG+GGG | + | chr1_4:49652193-49652212 | None:intergenic | 45.0% | |
CTTTGGGCAGAGGAAGAAAT+GGG | + | chr1_4:49652194-49652213 | None:intergenic | 45.0% | |
ACTTTGGGCAGAGGAAGAAA+TGG | + | chr1_4:49652195-49652214 | None:intergenic | 45.0% | |
GTTTCTTTCCATTCCAGGCA+TGG | - | chr1_4:49652329-49652348 | Msa0167710:intron | 45.0% | |
GACTTATAGGCCGATGTTAG+TGG | - | chr1_4:49652355-49652374 | Msa0167710:intron | 45.0% | |
!! | GCTGAGGCTATTGGTTTAGT+TGG | - | chr1_4:49652844-49652863 | Msa0167710:intron | 45.0% |
AGTGGTGTTTATGCGCTACT+TGG | - | chr1_4:49652889-49652908 | Msa0167710:intron | 45.0% | |
TTGAACTCATCAAGACCGAG+AGG | + | chr1_4:49653036-49653055 | None:intergenic | 45.0% | |
GTCTTGATGAGTTCAAGAGC+AGG | - | chr1_4:49653040-49653059 | Msa0167710:intron | 45.0% | |
!! | AAGTCAGGCACTGATCAATC+TGG | - | chr1_4:49653081-49653100 | Msa0167710:intron | 45.0% |
ATACATAGATTGGAGCCTGG+AGG | - | chr1_4:49653111-49653130 | Msa0167710:intron | 45.0% | |
GGCACCTTTCCCTTCTTTAT+TGG | + | chr1_4:49653187-49653206 | None:intergenic | 45.0% | |
TCTTCGAAATCCGTGTTCTG+TGG | - | chr1_4:49653239-49653258 | Msa0167710:intron | 45.0% | |
AGGAAAACCCAAGCATCTGT+TGG | + | chr1_4:49653387-49653406 | None:intergenic | 45.0% | |
! | ACAGATGCTTGGGTTTTCCT+TGG | - | chr1_4:49653387-49653406 | Msa0167710:intron | 45.0% |
! | CAGATGCTTGGGTTTTCCTT+GGG | - | chr1_4:49653388-49653407 | Msa0167710:intron | 45.0% |
TTGAGCATGCCTCACATTTG+AGG | + | chr1_4:49653424-49653443 | None:intergenic | 45.0% | |
CAAATGTGAGGCATGCTCAA+AGG | - | chr1_4:49653424-49653443 | Msa0167710:intron | 45.0% | |
ATGTTCACTCTCAGCAGGAT+CGG | + | chr1_4:49653658-49653677 | None:intergenic | 45.0% | |
TGAACATGTTCACTCTCAGC+AGG | + | chr1_4:49653663-49653682 | None:intergenic | 45.0% | |
! | GAAGAAGGGATATCTGAAGC+AGG | + | chr1_4:49653717-49653736 | None:intergenic | 45.0% |
GCCGTTTCATGATTGGAAGA+AGG | + | chr1_4:49653732-49653751 | None:intergenic | 45.0% | |
!! | GGTTGACGGATTTCTTCAAC+TGG | + | chr1_4:49653774-49653793 | None:intergenic | 45.0% |
GAAGAAATCCGTCAACCAGT+TGG | - | chr1_4:49653777-49653796 | Msa0167710:intron | 45.0% | |
ATCTTGAGAACAGTATCCCC+AGG | + | chr1_4:49653810-49653829 | None:intergenic | 45.0% | |
TACGCACTATAACATCCTGC+TGG | + | chr1_4:49654001-49654020 | None:intergenic | 45.0% | |
AAATGATTCGTTGCTCGTGC+AGG | - | chr1_4:49654101-49654120 | Msa0167710:intron | 45.0% | |
GCAGTTGGATCATATACTCC+AGG | - | chr1_4:49654170-49654189 | Msa0167710:CDS | 45.0% | |
!!! | TCCAGGACAATGCTGTTTTG+AGG | - | chr1_4:49654187-49654206 | Msa0167710:CDS | 45.0% |
ACCTCAAAACAGCATTGTCC+TGG | + | chr1_4:49654191-49654210 | None:intergenic | 45.0% | |
CTATATTGGGCCCTGTCTAT+TGG | + | chr1_4:49654306-49654325 | None:intergenic | 45.0% | |
AGAGACTAGGCTCGAATTAG+AGG | - | chr1_4:49654386-49654405 | Msa0167710:CDS | 45.0% | |
CCGATAGAAAGACTAAGGCA+GGG | + | chr1_4:49654613-49654632 | None:intergenic | 45.0% | |
! | CCCTGCCTTAGTCTTTCTAT+CGG | - | chr1_4:49654610-49654629 | Msa0167710:CDS | 45.0% |
TCCGATAGAAAGACTAAGGC+AGG | + | chr1_4:49654614-49654633 | None:intergenic | 45.0% | |
GGAGACTACAACTGCAACAA+AGG | + | chr1_4:49654896-49654915 | None:intergenic | 45.0% | |
! | AGTCTCCAGCACCATTGTTT+TGG | - | chr1_4:49654909-49654928 | Msa0167710:CDS | 45.0% |
! | GTCTCCAGCACCATTGTTTT+GGG | - | chr1_4:49654910-49654929 | Msa0167710:CDS | 45.0% |
!!! | CACCATTGTTTTGGGTGTGA+GGG | - | chr1_4:49654918-49654937 | Msa0167710:CDS | 45.0% |
!!! | ACCATTGTTTTGGGTGTGAG+GGG | - | chr1_4:49654919-49654938 | Msa0167710:CDS | 45.0% |
ACTTAGGCCTTAGGCAATGT+AGG | + | chr1_4:49654956-49654975 | None:intergenic | 45.0% | |
TCATCAAAATCGGCAGATGC+TGG | + | chr1_4:49655059-49655078 | None:intergenic | 45.0% | |
GCGTACAATACACCAAATGG+TGG | + | chr1_4:49655404-49655423 | None:intergenic | 45.0% | |
GCTGCGTACAATACACCAAA+TGG | + | chr1_4:49655407-49655426 | None:intergenic | 45.0% | |
! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_4:49655439-49655458 | Msa0167710:CDS | 45.0% |
CCTTGGGAGCAAAACCAATT+GGG | + | chr1_4:49655543-49655562 | None:intergenic | 45.0% | |
TCCTTGGGAGCAAAACCAAT+TGG | + | chr1_4:49655544-49655563 | None:intergenic | 45.0% | |
TGAGAGAAATCTCTCCTCCA+AGG | - | chr1_4:49655785-49655804 | Msa0167710:intron | 45.0% | |
GAGAGAAATCTCTCCTCCAA+GGG | - | chr1_4:49655786-49655805 | Msa0167710:intron | 45.0% | |
ATTCAGGTCCGAGGTTGAAA+AGG | - | chr1_4:49656118-49656137 | Msa0167710:CDS | 45.0% | |
! | TGACTCCAGGGAATTTTGTG+TGG | - | chr1_4:49656283-49656302 | Msa0167710:five_prime_UTR | 45.0% |
! | GACTCCAGGGAATTTTGTGT+GGG | - | chr1_4:49656284-49656303 | Msa0167710:five_prime_UTR | 45.0% |
AGCAGTAGGAAGACAAGACG+AGG | - | chr1_4:49652046-49652065 | Msa0167710:CDS | 50.0% | |
GCAGTAGGAAGACAAGACGA+GGG | - | chr1_4:49652047-49652066 | Msa0167710:CDS | 50.0% | |
TAGGAAGACAAGACGAGGGA+GGG | - | chr1_4:49652051-49652070 | Msa0167710:CDS | 50.0% | |
ATTGTGCAGAAGTCGAGTCG+CGG | + | chr1_4:49652102-49652121 | None:intergenic | 50.0% | |
GAGATCACGTAAAGCTCGCA+TGG | - | chr1_4:49652136-49652155 | Msa0167710:CDS | 50.0% | |
AGCTTATGGGTCACTCACAC+AGG | - | chr1_4:49652272-49652291 | Msa0167710:intron | 50.0% | |
CTTTCCATTCCAGGCATGGT+AGG | - | chr1_4:49652333-49652352 | Msa0167710:intron | 50.0% | |
AAGTCCTACCATGCCTGGAA+TGG | + | chr1_4:49652340-49652359 | None:intergenic | 50.0% | |
CCTATAAGTCCTACCATGCC+TGG | + | chr1_4:49652345-49652364 | None:intergenic | 50.0% | |
CCAGGCATGGTAGGACTTAT+AGG | - | chr1_4:49652342-49652361 | Msa0167710:intron | 50.0% | |
TCGGATGAGGAGGGATTTGT+TGG | - | chr1_4:49652389-49652408 | Msa0167710:intron | 50.0% | |
GGATCTGAAGAGCTTTCAGC+TGG | - | chr1_4:49652694-49652713 | Msa0167710:intron | 50.0% | |
GGTGTTTATGCGCTACTTGG+TGG | - | chr1_4:49652892-49652911 | Msa0167710:intron | 50.0% | |
TCGAAATCCGTGTTCTGTGG+AGG | - | chr1_4:49653242-49653261 | Msa0167710:intron | 50.0% | |
ATCCTCCAGCATCCTCTCAA+CGG | + | chr1_4:49653562-49653581 | None:intergenic | 50.0% | |
TGTTCACTCTCAGCAGGATC+GGG | + | chr1_4:49653657-49653676 | None:intergenic | 50.0% | |
! | AGGGATATCTGAAGCAGGGT+GGG | + | chr1_4:49653712-49653731 | None:intergenic | 50.0% |
! | AAGGGATATCTGAAGCAGGG+TGG | + | chr1_4:49653713-49653732 | None:intergenic | 50.0% |
CGGATTTCTTCAACTGGAGC+AGG | + | chr1_4:49653768-49653787 | None:intergenic | 50.0% | |
AAATCCGTCAACCAGTTGGC+AGG | - | chr1_4:49653781-49653800 | Msa0167710:intron | 50.0% | |
CTCGTGCAGGCAAAATATGC+TGG | - | chr1_4:49654114-49654133 | Msa0167710:intron | 50.0% | |
GTTCTATGCTAAGACCCGAC+TGG | - | chr1_4:49654634-49654653 | Msa0167710:CDS | 50.0% | |
! | TTCACTTGTTGGGCCAGATC+TGG | + | chr1_4:49654717-49654736 | None:intergenic | 50.0% |
CACACCCAAAACAATGGTGC+TGG | + | chr1_4:49654917-49654936 | None:intergenic | 50.0% | |
!!! | GCACCATTGTTTTGGGTGTG+AGG | - | chr1_4:49654917-49654936 | Msa0167710:CDS | 50.0% |
TCCCCTCACACCCAAAACAA+TGG | + | chr1_4:49654923-49654942 | None:intergenic | 50.0% | |
GTACTCCCTCGAAAAACGGA+GGG | - | chr1_4:49655260-49655279 | Msa0167710:CDS | 50.0% | |
!! | TCCAACCCTCCGTTTTTCGA+GGG | + | chr1_4:49655268-49655287 | None:intergenic | 50.0% |
TCGAAAAACGGAGGGTTGGA+CGG | - | chr1_4:49655268-49655287 | Msa0167710:CDS | 50.0% | |
GACAAGGAAAAAGGGCAACC+TGG | - | chr1_4:49655337-49655356 | Msa0167710:CDS | 50.0% | |
AAGGTCACGAGTTCAAGTCC+TGG | + | chr1_4:49655460-49655479 | None:intergenic | 50.0% | |
CAACTTTACCAGTTGCGCCA+AGG | - | chr1_4:49655495-49655514 | Msa0167710:CDS | 50.0% | |
TACCAGTTGCGCCAAGGTTA+AGG | - | chr1_4:49655501-49655520 | Msa0167710:CDS | 50.0% | |
TTCCTTAACCTTGGCGCAAC+TGG | + | chr1_4:49655506-49655525 | None:intergenic | 50.0% | |
!!! | CCCAATTGGTTTTGCTCCCA+AGG | - | chr1_4:49655540-49655559 | Msa0167710:CDS | 50.0% |
CTTTGTGAAGGGGAAACCCT+TGG | + | chr1_4:49655805-49655824 | None:intergenic | 50.0% | |
CCAAAGAAACCTGCTTCTCC+CGG | + | chr1_4:49656145-49656164 | None:intergenic | 50.0% | |
GCTACCCACACAAAATTCCC+TGG | + | chr1_4:49656291-49656310 | None:intergenic | 50.0% | |
TTTGTGTGGGTAGCTCTTCC+TGG | - | chr1_4:49656297-49656316 | Msa0167710:five_prime_UTR | 50.0% | |
CATCCTAAGCAGGCAGCAGT+AGG | - | chr1_4:49652032-49652051 | Msa0167710:CDS | 55.0% | |
CTTCCTACTGCTGCCTGCTT+AGG | + | chr1_4:49652038-49652057 | None:intergenic | 55.0% | |
GTAGGAAGACAAGACGAGGG+AGG | - | chr1_4:49652050-49652069 | Msa0167710:CDS | 55.0% | |
AGGAAGACAAGACGAGGGAG+GGG | - | chr1_4:49652052-49652071 | Msa0167710:CDS | 55.0% | |
!! | CCTCACAAGCCGGTTTGTTG+GGG | + | chr1_4:49652555-49652574 | None:intergenic | 55.0% |
!! | GCCTCACAAGCCGGTTTGTT+GGG | + | chr1_4:49652556-49652575 | None:intergenic | 55.0% |
GCAATCTTCGCCTCACAAGC+CGG | + | chr1_4:49652565-49652584 | None:intergenic | 55.0% | |
!! | CTCTAAAGGTGGAGGTGCTG+AGG | - | chr1_4:49652828-49652847 | Msa0167710:intron | 55.0% |
TTATCTCGGGCTGTGCCTCT+CGG | - | chr1_4:49653018-49653037 | Msa0167710:intron | 55.0% | |
TTGGTGTGGATGCCGTTGAG+AGG | - | chr1_4:49653547-49653566 | Msa0167710:intron | 55.0% | |
ACTCTCAGCAGGATCGGGAT+GGG | + | chr1_4:49653652-49653671 | None:intergenic | 55.0% | |
GCATCCTGCCAACTGGTTGA+CGG | + | chr1_4:49653788-49653807 | None:intergenic | 55.0% | |
AACCAGTTGGCAGGATGCCT+GGG | - | chr1_4:49653790-49653809 | Msa0167710:intron | 55.0% | |
AGAGGGGACTGCAATTCAGG+CGG | + | chr1_4:49654846-49654865 | None:intergenic | 55.0% | |
GCTAGAGGGGACTGCAATTC+AGG | + | chr1_4:49654849-49654868 | None:intergenic | 55.0% | |
AGCCACCTAAGTGCGGCATT+TGG | - | chr1_4:49654866-49654885 | Msa0167710:CDS | 55.0% | |
GCCACCTAAGTGCGGCATTT+GGG | - | chr1_4:49654867-49654886 | Msa0167710:CDS | 55.0% | |
ACCCAAATGCCGCACTTAGG+TGG | + | chr1_4:49654871-49654890 | None:intergenic | 55.0% | |
GCAACCCAAATGCCGCACTT+AGG | + | chr1_4:49654874-49654893 | None:intergenic | 55.0% | |
GGTACTCCCTCGAAAAACGG+AGG | - | chr1_4:49655259-49655278 | Msa0167710:CDS | 55.0% | |
TCCCTCGAAAAACGGAGGGT+TGG | - | chr1_4:49655264-49655283 | Msa0167710:CDS | 55.0% | |
!! | GTCCAACCCTCCGTTTTTCG+AGG | + | chr1_4:49655269-49655288 | None:intergenic | 55.0% |
TGTGAAGGGGAAACCCTTGG+AGG | + | chr1_4:49655802-49655821 | None:intergenic | 55.0% | |
GGTCCGAGGTTGAAAAGGTC+CGG | - | chr1_4:49656123-49656142 | Msa0167710:CDS | 55.0% | |
GTCCGAGGTTGAAAAGGTCC+GGG | - | chr1_4:49656124-49656143 | Msa0167710:CDS | 55.0% | |
! | CTCCCGGACCTTTTCAACCT+CGG | + | chr1_4:49656129-49656148 | None:intergenic | 55.0% |
TGAAAAGGTCCGGGAGAAGC+AGG | - | chr1_4:49656133-49656152 | Msa0167710:CDS | 55.0% | |
CCGGGAGAAGCAGGTTTCTT+TGG | - | chr1_4:49656142-49656161 | Msa0167710:CDS | 55.0% | |
!! | CCCCAACAAACCGGCTTGTG+AGG | - | chr1_4:49652552-49652571 | Msa0167710:intron | 60.0% |
!! | CGCCTCACAAGCCGGTTTGT+TGG | + | chr1_4:49652557-49652576 | None:intergenic | 60.0% |
!! | GGTGGAGGTGCTGAGGCTAT+TGG | - | chr1_4:49652835-49652854 | Msa0167710:intron | 60.0% |
GGATGCCGTTGAGAGGATGC+TGG | - | chr1_4:49653554-49653573 | Msa0167710:intron | 60.0% | |
TGCCGTTGAGAGGATGCTGG+AGG | - | chr1_4:49653557-49653576 | Msa0167710:intron | 60.0% | |
CTCTCAGCAGGATCGGGATG+GGG | + | chr1_4:49653651-49653670 | None:intergenic | 60.0% | |
CACTCTCAGCAGGATCGGGA+TGG | + | chr1_4:49653653-49653672 | None:intergenic | 60.0% | |
CAACCAGTTGGCAGGATGCC+TGG | - | chr1_4:49653789-49653808 | Msa0167710:intron | 60.0% | |
ACCAGTTGGCAGGATGCCTG+GGG | - | chr1_4:49653791-49653810 | Msa0167710:intron | 60.0% | |
CCGCACTTAGGTGGCTAGAG+GGG | + | chr1_4:49654862-49654881 | None:intergenic | 60.0% | |
CCCCTCTAGCCACCTAAGTG+CGG | - | chr1_4:49654859-49654878 | Msa0167710:CDS | 60.0% | |
GCCGCACTTAGGTGGCTAGA+GGG | + | chr1_4:49654863-49654882 | None:intergenic | 60.0% | |
TGCCGCACTTAGGTGGCTAG+AGG | + | chr1_4:49654864-49654883 | None:intergenic | 60.0% | |
ACTGAAGCTCCCGCATACGC+AGG | - | chr1_4:49655363-49655382 | Msa0167710:CDS | 60.0% | |
CTGAAGCTCCCGCATACGCA+GGG | - | chr1_4:49655364-49655383 | Msa0167710:CDS | 60.0% | |
! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1_4:49655391-49655410 | None:intergenic | 60.0% |
TCCCCAGGCATCCTGCCAAC+TGG | + | chr1_4:49653795-49653814 | None:intergenic | 65.0% | |
TGCGGGAGCTTCAGTGCACC+AGG | + | chr1_4:49655358-49655377 | None:intergenic | 65.0% | |
TTCCCGGACCCTGCGTATGC+GGG | + | chr1_4:49655375-49655394 | None:intergenic | 65.0% | |
CTTCCCGGACCCTGCGTATG+CGG | + | chr1_4:49655376-49655395 | None:intergenic | 65.0% | |
GCATACGCAGGGTCCGGGAA+GGG | - | chr1_4:49655375-49655394 | Msa0167710:CDS | 65.0% | |
CATACGCAGGGTCCGGGAAG+GGG | - | chr1_4:49655376-49655395 | Msa0167710:CDS | 65.0% | |
CGGGAAGGGGTCCCACCATT+TGG | - | chr1_4:49655389-49655408 | Msa0167710:CDS | 65.0% | |
GCTCCCGCATACGCAGGGTC+CGG | - | chr1_4:49655369-49655388 | Msa0167710:CDS | 70.0% | |
CTCCCGCATACGCAGGGTCC+GGG | - | chr1_4:49655370-49655389 | Msa0167710:CDS | 70.0% | |
CGCATACGCAGGGTCCGGGA+AGG | - | chr1_4:49655374-49655393 | Msa0167710:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 49651965 | 49656378 | 49651965 | ID=Msa0167710;Name=Msa0167710 |
chr1_4 | mRNA | 49651965 | 49656378 | 49651965 | ID=Msa0167710-mRNA-1;Parent=Msa0167710;Name=Msa0167710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=166|1|1|1|1|1|4|8|605 |
chr1_4 | exon | 49651965 | 49652219 | 49651965 | ID=Msa0167710-mRNA-1:exon:14643;Parent=Msa0167710-mRNA-1 |
chr1_4 | exon | 49654135 | 49654220 | 49654135 | ID=Msa0167710-mRNA-1:exon:14642;Parent=Msa0167710-mRNA-1 |
chr1_4 | exon | 49654330 | 49655651 | 49654330 | ID=Msa0167710-mRNA-1:exon:14641;Parent=Msa0167710-mRNA-1 |
chr1_4 | exon | 49656050 | 49656378 | 49656050 | ID=Msa0167710-mRNA-1:exon:14640;Parent=Msa0167710-mRNA-1 |
chr1_4 | five_prime_UTR | 49656213 | 49656378 | 49656213 | ID=Msa0167710-mRNA-1:five_prime_utr;Parent=Msa0167710-mRNA-1 |
chr1_4 | CDS | 49656050 | 49656212 | 49656050 | ID=Msa0167710-mRNA-1:cds;Parent=Msa0167710-mRNA-1 |
chr1_4 | CDS | 49654330 | 49655651 | 49654330 | ID=Msa0167710-mRNA-1:cds;Parent=Msa0167710-mRNA-1 |
chr1_4 | CDS | 49654135 | 49654220 | 49654135 | ID=Msa0167710-mRNA-1:cds;Parent=Msa0167710-mRNA-1 |
chr1_4 | CDS | 49651973 | 49652219 | 49651973 | ID=Msa0167710-mRNA-1:cds;Parent=Msa0167710-mRNA-1 |
chr1_4 | three_prime_UTR | 49651965 | 49651972 | 49651965 | ID=Msa0167710-mRNA-1:three_prime_utr;Parent=Msa0167710-mRNA-1 |
Gene Sequence |
Protein sequence |