Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149370 | KAG4380031.1 | 84.211 | 38 | 6 | 0 | 22 | 59 | 116 | 153 | 7.58e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149370 | A0A445JX74 | 84.211 | 38 | 6 | 0 | 22 | 59 | 334 | 371 | 4.65e-12 | 70.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0824390 | Msa1149370 | 0.803821 | 2.902601e-49 | -8.615850e-47 |
| Msa0390070 | Msa1149370 | 0.800326 | 1.518788e-48 | -8.615850e-47 |
| Msa0342750 | Msa1149370 | 0.800213 | 1.601523e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149370 | MtrunA17_Chr7g0242941 | 89.189 | 37 | 4 | 0 | 23 | 59 | 333 | 369 | 9.96e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149370 | AT3G08960.2 | 63.158 | 38 | 14 | 0 | 22 | 59 | 335 | 372 | 4.43e-11 | 57.4 |
| Msa1149370 | AT3G08960.1 | 63.158 | 38 | 14 | 0 | 22 | 59 | 335 | 372 | 4.43e-11 | 57.4 |
| Msa1149370 | AT3G08960.3 | 63.158 | 38 | 14 | 0 | 22 | 59 | 335 | 372 | 4.43e-11 | 57.4 |
Find 22 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCCAATCTTTGATATCT+TGG | 0.283677 | 7_4:-30622086 | None:intergenic |
| CAGTTCAATGACAGTAGATT+TGG | 0.316248 | 7_4:-30623253 | None:intergenic |
| ATACAAGCCTAGTCTCTTAA+TGG | 0.331983 | 7_4:+30623389 | Msa1149370:CDS |
| CGTCGGGTGGTGGATGAAAA+AGG | 0.335136 | 7_4:+30623345 | Msa1149370:CDS |
| GGTGATGATTAAGAATATTC+TGG | 0.335770 | 7_4:+30623293 | Msa1149370:CDS |
| GGTCGGATGGTGGATGAAAA+AGG | 0.353944 | 7_4:+30623410 | Msa1149370:CDS |
| TAAGAATATTCTGGAATGTA+AGG | 0.396830 | 7_4:+30623302 | Msa1149370:CDS |
| ACTGTTTCTCGTTCAATGTA+TGG | 0.414863 | 7_4:+30623272 | Msa1149370:CDS |
| CAATGACAGTAGATTTGGCT+TGG | 0.422323 | 7_4:-30623248 | None:intergenic |
| AGGAGTTACACTGGAATGTA+AGG | 0.439765 | 7_4:+30623365 | Msa1149370:CDS |
| AATGACAGTAGATTTGGCTT+GGG | 0.465313 | 7_4:-30623247 | None:intergenic |
| ATCAAAGATTGGCCAATAGC+AGG | 0.488443 | 7_4:+30622093 | Msa1149370:CDS |
| GAGTCTTACTCGTCGGGTGG+TGG | 0.495806 | 7_4:+30623335 | Msa1149370:CDS |
| AAGACCAAGATATCAAAGAT+TGG | 0.526398 | 7_4:+30622082 | Msa1149370:CDS |
| CAAGCCGAGTCTTACTCGTC+GGG | 0.527155 | 7_4:+30623329 | Msa1149370:CDS |
| GTCTCTTAATGGTCGGATGG+TGG | 0.556198 | 7_4:+30623400 | Msa1149370:CDS |
| CATCCGACCATTAAGAGACT+AGG | 0.564298 | 7_4:-30623396 | None:intergenic |
| CTAGTCTCTTAATGGTCGGA+TGG | 0.584797 | 7_4:+30623397 | Msa1149370:CDS |
| ACAAGCCGAGTCTTACTCGT+CGG | 0.615204 | 7_4:+30623328 | Msa1149370:CDS |
| AAGCCTAGTCTCTTAATGGT+CGG | 0.620780 | 7_4:+30623393 | Msa1149370:CDS |
| GCCGAGTCTTACTCGTCGGG+TGG | 0.638001 | 7_4:+30623332 | Msa1149370:CDS |
| ACCACCCGACGAGTAAGACT+CGG | 0.658122 | 7_4:-30623333 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTGTTGAATATTTTTTTTAA+CGG | + | chr7_4:30621866-30621885 | Msa1149370:intron | 15.0% |
| !!! | CTTAATATATATTTAGCTTT+TGG | + | chr7_4:30622785-30622804 | Msa1149370:intron | 15.0% |
| !!! | AACTAAAATTTTCATCAATT+TGG | - | chr7_4:30623140-30623159 | None:intergenic | 15.0% |
| !!! | CTGTTGAATATTTTTTTTAA+CGG | + | chr7_4:30621866-30621885 | Msa1149370:intron | 15.0% |
| !!! | CTTAATATATATTTAGCTTT+TGG | + | chr7_4:30622785-30622804 | Msa1149370:intron | 15.0% |
| !!! | AACTAAAATTTTCATCAATT+TGG | - | chr7_4:30623140-30623159 | None:intergenic | 15.0% |
| !!! | AAAACTTTCAAGTTAACTAA+CGG | - | chr7_4:30622002-30622021 | None:intergenic | 20.0% |
| !!! | TTGTTGGATTTTTTTCATTT+TGG | + | chr7_4:30622047-30622066 | Msa1149370:intron | 20.0% |
| !! | AATTACTAAGAGTTAAAGTT+TGG | + | chr7_4:30622224-30622243 | Msa1149370:intron | 20.0% |
| !! | TTAATACAAACATTGTCAAA+TGG | + | chr7_4:30622496-30622515 | Msa1149370:intron | 20.0% |
| !!! | GTTTGAACTGTTAATATTTT+TGG | + | chr7_4:30622567-30622586 | Msa1149370:intron | 20.0% |
| !! | CACATAAATGTTATATTTGT+TGG | - | chr7_4:30622720-30622739 | None:intergenic | 20.0% |
| !!! | AAAATTTTAGTTTCCATTCA+GGG | + | chr7_4:30623148-30623167 | Msa1149370:intron | 20.0% |
| !!! | AAAACTTTCAAGTTAACTAA+CGG | - | chr7_4:30622002-30622021 | None:intergenic | 20.0% |
| !!! | TTGTTGGATTTTTTTCATTT+TGG | + | chr7_4:30622047-30622066 | Msa1149370:intron | 20.0% |
| !! | AATTACTAAGAGTTAAAGTT+TGG | + | chr7_4:30622224-30622243 | Msa1149370:intron | 20.0% |
| !! | TTAATACAAACATTGTCAAA+TGG | + | chr7_4:30622496-30622515 | Msa1149370:intron | 20.0% |
| !!! | GTTTGAACTGTTAATATTTT+TGG | + | chr7_4:30622567-30622586 | Msa1149370:intron | 20.0% |
| !! | CACATAAATGTTATATTTGT+TGG | - | chr7_4:30622720-30622739 | None:intergenic | 20.0% |
| !!! | AAAATTTTAGTTTCCATTCA+GGG | + | chr7_4:30623148-30623167 | Msa1149370:intron | 20.0% |
| !! | AAAGTTTTTGCCTATTCATT+GGG | + | chr7_4:30622014-30622033 | Msa1149370:intron | 25.0% |
| !!! | GATTTTTTTCATTTTGGTGT+TGG | + | chr7_4:30622053-30622072 | Msa1149370:intron | 25.0% |
| ! | GATTATAAAAAACCTGCTAT+TGG | - | chr7_4:30622108-30622127 | None:intergenic | 25.0% |
| ! | AGAAAAACAAAAAACTCCTT+GGG | - | chr7_4:30622260-30622279 | None:intergenic | 25.0% |
| ! | GAAGGGAAGAAAATATTTAA+AGG | - | chr7_4:30622911-30622930 | None:intergenic | 25.0% |
| !!! | GAAAATTTTAGTTTCCATTC+AGG | + | chr7_4:30623147-30623166 | Msa1149370:intron | 25.0% |
| !!! | TAAGAATATTCTGGAATGTA+AGG | + | chr7_4:30623302-30623321 | Msa1149370:CDS | 25.0% |
| !! | AAAGTTTTTGCCTATTCATT+GGG | + | chr7_4:30622014-30622033 | Msa1149370:intron | 25.0% |
| !!! | GATTTTTTTCATTTTGGTGT+TGG | + | chr7_4:30622053-30622072 | Msa1149370:intron | 25.0% |
| ! | GATTATAAAAAACCTGCTAT+TGG | - | chr7_4:30622108-30622127 | None:intergenic | 25.0% |
| ! | AGAAAAACAAAAAACTCCTT+GGG | - | chr7_4:30622260-30622279 | None:intergenic | 25.0% |
| ! | GAAGGGAAGAAAATATTTAA+AGG | - | chr7_4:30622911-30622930 | None:intergenic | 25.0% |
| !!! | GAAAATTTTAGTTTCCATTC+AGG | + | chr7_4:30623147-30623166 | Msa1149370:intron | 25.0% |
| !!! | TAAGAATATTCTGGAATGTA+AGG | + | chr7_4:30623302-30623321 | Msa1149370:CDS | 25.0% |
| ATGCTGTTGAATATGATCTT+TGG | + | chr7_4:30621892-30621911 | Msa1149370:intron | 30.0% | |
| TGTTGAATATGATCTTTGGA+AGG | + | chr7_4:30621896-30621915 | Msa1149370:intron | 30.0% | |
| ! | GAAAGTTTTTGCCTATTCAT+TGG | + | chr7_4:30622013-30622032 | Msa1149370:intron | 30.0% |
| AAAAAAATCCAACAACGAAG+TGG | - | chr7_4:30622042-30622061 | None:intergenic | 30.0% | |
| AAGACCAAGATATCAAAGAT+TGG | + | chr7_4:30622082-30622101 | Msa1149370:CDS | 30.0% | |
| CTATATACAATTTCAGTGTC+AGG | + | chr7_4:30622146-30622165 | Msa1149370:intron | 30.0% | |
| GAGAAAAACAAAAAACTCCT+TGG | - | chr7_4:30622261-30622280 | None:intergenic | 30.0% | |
| ATCTTTGTTCTGTTTGATCA+AGG | - | chr7_4:30622325-30622344 | None:intergenic | 30.0% | |
| TCACAATGTTGCTAAATAGT+TGG | + | chr7_4:30622422-30622441 | Msa1149370:intron | 30.0% | |
| ATACAAACATTGTCAAATGG+CGG | + | chr7_4:30622499-30622518 | Msa1149370:intron | 30.0% | |
| !!! | TTTTGGATTAGTCAATTTGC+AGG | + | chr7_4:30622584-30622603 | Msa1149370:intron | 30.0% |
| !! | TTTGGATTAGTCAATTTGCA+GGG | + | chr7_4:30622585-30622604 | Msa1149370:intron | 30.0% |
| AAAGATAAGATCTTGAGTGT+AGG | + | chr7_4:30622608-30622627 | Msa1149370:intron | 30.0% | |
| AAGATAAGATCTTGAGTGTA+GGG | + | chr7_4:30622609-30622628 | Msa1149370:intron | 30.0% | |
| AATGTACAAACAAAACCACT+AGG | - | chr7_4:30622691-30622710 | None:intergenic | 30.0% | |
| ATAGACAGTAGCTATATGAT+AGG | + | chr7_4:30622858-30622877 | Msa1149370:intron | 30.0% | |
| !! | TAAAGGTTCGAATTTTAGCA+TGG | - | chr7_4:30622894-30622913 | None:intergenic | 30.0% |
| ! | AAAAGCAGCATCCTAAATTT+TGG | + | chr7_4:30623094-30623113 | Msa1149370:intron | 30.0% |
| ! | AAAGCAGCATCCTAAATTTT+GGG | + | chr7_4:30623095-30623114 | Msa1149370:intron | 30.0% |
| !! | TCTTTAGAGTCCCAAAATTT+AGG | - | chr7_4:30623108-30623127 | None:intergenic | 30.0% |
| !!! | TAAATTTTGGGACTCTAAAG+AGG | + | chr7_4:30623107-30623126 | Msa1149370:intron | 30.0% |
| !!! | AAATTTTGGGACTCTAAAGA+GGG | + | chr7_4:30623108-30623127 | Msa1149370:intron | 30.0% |
| GGTGATGATTAAGAATATTC+TGG | + | chr7_4:30623293-30623312 | Msa1149370:CDS | 30.0% | |
| ATGCTGTTGAATATGATCTT+TGG | + | chr7_4:30621892-30621911 | Msa1149370:intron | 30.0% | |
| TGTTGAATATGATCTTTGGA+AGG | + | chr7_4:30621896-30621915 | Msa1149370:intron | 30.0% | |
| ! | GAAAGTTTTTGCCTATTCAT+TGG | + | chr7_4:30622013-30622032 | Msa1149370:intron | 30.0% |
| AAAAAAATCCAACAACGAAG+TGG | - | chr7_4:30622042-30622061 | None:intergenic | 30.0% | |
| AAGACCAAGATATCAAAGAT+TGG | + | chr7_4:30622082-30622101 | Msa1149370:CDS | 30.0% | |
| CTATATACAATTTCAGTGTC+AGG | + | chr7_4:30622146-30622165 | Msa1149370:intron | 30.0% | |
| GAGAAAAACAAAAAACTCCT+TGG | - | chr7_4:30622261-30622280 | None:intergenic | 30.0% | |
| ATCTTTGTTCTGTTTGATCA+AGG | - | chr7_4:30622325-30622344 | None:intergenic | 30.0% | |
| TCACAATGTTGCTAAATAGT+TGG | + | chr7_4:30622422-30622441 | Msa1149370:intron | 30.0% | |
| ATACAAACATTGTCAAATGG+CGG | + | chr7_4:30622499-30622518 | Msa1149370:intron | 30.0% | |
| !!! | TTTTGGATTAGTCAATTTGC+AGG | + | chr7_4:30622584-30622603 | Msa1149370:intron | 30.0% |
| !! | TTTGGATTAGTCAATTTGCA+GGG | + | chr7_4:30622585-30622604 | Msa1149370:intron | 30.0% |
| AAAGATAAGATCTTGAGTGT+AGG | + | chr7_4:30622608-30622627 | Msa1149370:intron | 30.0% | |
| AAGATAAGATCTTGAGTGTA+GGG | + | chr7_4:30622609-30622628 | Msa1149370:intron | 30.0% | |
| AATGTACAAACAAAACCACT+AGG | - | chr7_4:30622691-30622710 | None:intergenic | 30.0% | |
| ATAGACAGTAGCTATATGAT+AGG | + | chr7_4:30622858-30622877 | Msa1149370:intron | 30.0% | |
| !! | TAAAGGTTCGAATTTTAGCA+TGG | - | chr7_4:30622894-30622913 | None:intergenic | 30.0% |
| ! | AAAAGCAGCATCCTAAATTT+TGG | + | chr7_4:30623094-30623113 | Msa1149370:intron | 30.0% |
| ! | AAAGCAGCATCCTAAATTTT+GGG | + | chr7_4:30623095-30623114 | Msa1149370:intron | 30.0% |
| !! | TCTTTAGAGTCCCAAAATTT+AGG | - | chr7_4:30623108-30623127 | None:intergenic | 30.0% |
| !!! | TAAATTTTGGGACTCTAAAG+AGG | + | chr7_4:30623107-30623126 | Msa1149370:intron | 30.0% |
| !!! | AAATTTTGGGACTCTAAAGA+GGG | + | chr7_4:30623108-30623127 | Msa1149370:intron | 30.0% |
| GGTGATGATTAAGAATATTC+TGG | + | chr7_4:30623293-30623312 | Msa1149370:CDS | 30.0% | |
| ! | TGAATATGATCTTTGGAAGG+TGG | + | chr7_4:30621899-30621918 | Msa1149370:intron | 35.0% |
| !!! | TTTTTCATTTTGGTGTTGGC+AGG | + | chr7_4:30622057-30622076 | Msa1149370:intron | 35.0% |
| TTGGCCAATCTTTGATATCT+TGG | - | chr7_4:30622089-30622108 | None:intergenic | 35.0% | |
| ACATTGTGATCATCTTCAAG+TGG | - | chr7_4:30622411-30622430 | None:intergenic | 35.0% | |
| !! | GTGTAGGGATATTTTTGTGA+AGG | + | chr7_4:30622624-30622643 | Msa1149370:intron | 35.0% |
| TAGACATTGTAGAGTGAGAA+GGG | - | chr7_4:30622928-30622947 | None:intergenic | 35.0% | |
| ! | ACAATGTCTAGTTCGCATAT+TGG | + | chr7_4:30622938-30622957 | Msa1149370:intron | 35.0% |
| !! | TTTTGAAAAGACGAATCTGC+AGG | - | chr7_4:30623078-30623097 | None:intergenic | 35.0% |
| ATTTGTGCTTTCATCAGTCA+CGG | + | chr7_4:30623198-30623217 | Msa1149370:intron | 35.0% | |
| ! | AATGACAGTAGATTTGGCTT+GGG | - | chr7_4:30623250-30623269 | None:intergenic | 35.0% |
| CAGTTCAATGACAGTAGATT+TGG | - | chr7_4:30623256-30623275 | None:intergenic | 35.0% | |
| ! | ACTGTTTCTCGTTCAATGTA+TGG | + | chr7_4:30623272-30623291 | Msa1149370:CDS | 35.0% |
| ATACAAGCCTAGTCTCTTAA+TGG | + | chr7_4:30623389-30623408 | Msa1149370:CDS | 35.0% | |
| ! | TGAATATGATCTTTGGAAGG+TGG | + | chr7_4:30621899-30621918 | Msa1149370:intron | 35.0% |
| !!! | TTTTTCATTTTGGTGTTGGC+AGG | + | chr7_4:30622057-30622076 | Msa1149370:intron | 35.0% |
| TTGGCCAATCTTTGATATCT+TGG | - | chr7_4:30622089-30622108 | None:intergenic | 35.0% | |
| ACATTGTGATCATCTTCAAG+TGG | - | chr7_4:30622411-30622430 | None:intergenic | 35.0% | |
| !! | GTGTAGGGATATTTTTGTGA+AGG | + | chr7_4:30622624-30622643 | Msa1149370:intron | 35.0% |
| TAGACATTGTAGAGTGAGAA+GGG | - | chr7_4:30622928-30622947 | None:intergenic | 35.0% | |
| ! | ACAATGTCTAGTTCGCATAT+TGG | + | chr7_4:30622938-30622957 | Msa1149370:intron | 35.0% |
| !! | TTTTGAAAAGACGAATCTGC+AGG | - | chr7_4:30623078-30623097 | None:intergenic | 35.0% |
| ATTTGTGCTTTCATCAGTCA+CGG | + | chr7_4:30623198-30623217 | Msa1149370:intron | 35.0% | |
| ! | AATGACAGTAGATTTGGCTT+GGG | - | chr7_4:30623250-30623269 | None:intergenic | 35.0% |
| CAGTTCAATGACAGTAGATT+TGG | - | chr7_4:30623256-30623275 | None:intergenic | 35.0% | |
| ! | ACTGTTTCTCGTTCAATGTA+TGG | + | chr7_4:30623272-30623291 | Msa1149370:CDS | 35.0% |
| ATACAAGCCTAGTCTCTTAA+TGG | + | chr7_4:30623389-30623408 | Msa1149370:CDS | 35.0% | |
| ! | ATATGATCTTTGGAAGGTGG+TGG | + | chr7_4:30621902-30621921 | Msa1149370:intron | 40.0% |
| TAACTATCTATCCATTGCCG+AGG | + | chr7_4:30621946-30621965 | Msa1149370:intron | 40.0% | |
| ! | ATCAAAGATTGGCCAATAGC+AGG | + | chr7_4:30622093-30622112 | Msa1149370:CDS | 40.0% |
| GTTTGGAAGTAATGTTCCCA+AGG | + | chr7_4:30622241-30622260 | Msa1149370:intron | 40.0% | |
| AATAGTTGGCTATAGCACAG+CGG | + | chr7_4:30622436-30622455 | Msa1149370:intron | 40.0% | |
| TGCACGGAATTTGAACAAAC+TGG | + | chr7_4:30622545-30622564 | Msa1149370:intron | 40.0% | |
| ACCACTAGGACAGATTAAAG+AGG | - | chr7_4:30622677-30622696 | None:intergenic | 40.0% | |
| !!! | ATATTTAGCTTTTGGTGCCC+AGG | + | chr7_4:30622793-30622812 | Msa1149370:intron | 40.0% |
| CTAGACATTGTAGAGTGAGA+AGG | - | chr7_4:30622929-30622948 | None:intergenic | 40.0% | |
| ! | ATGTCTAGTTCGCATATTGG+TGG | + | chr7_4:30622941-30622960 | Msa1149370:intron | 40.0% |
| AATCTATCCCCAAAGGAGTA+AGG | - | chr7_4:30623181-30623200 | None:intergenic | 40.0% | |
| AAGCACAAATCTATCCCCAA+AGG | - | chr7_4:30623188-30623207 | None:intergenic | 40.0% | |
| CAATGACAGTAGATTTGGCT+TGG | - | chr7_4:30623251-30623270 | None:intergenic | 40.0% | |
| GGATGAAAAAGGAGTTACAC+TGG | + | chr7_4:30623356-30623375 | Msa1149370:CDS | 40.0% | |
| AGGAGTTACACTGGAATGTA+AGG | + | chr7_4:30623365-30623384 | Msa1149370:CDS | 40.0% | |
| AAGCCTAGTCTCTTAATGGT+CGG | + | chr7_4:30623393-30623412 | Msa1149370:CDS | 40.0% | |
| GGATGAAAAAGGAGTTACAC+TGG | + | chr7_4:30623356-30623375 | Msa1149370:CDS | 40.0% | |
| ! | ATATGATCTTTGGAAGGTGG+TGG | + | chr7_4:30621902-30621921 | Msa1149370:intron | 40.0% |
| TAACTATCTATCCATTGCCG+AGG | + | chr7_4:30621946-30621965 | Msa1149370:intron | 40.0% | |
| ! | ATCAAAGATTGGCCAATAGC+AGG | + | chr7_4:30622093-30622112 | Msa1149370:CDS | 40.0% |
| GTTTGGAAGTAATGTTCCCA+AGG | + | chr7_4:30622241-30622260 | Msa1149370:intron | 40.0% | |
| AATAGTTGGCTATAGCACAG+CGG | + | chr7_4:30622436-30622455 | Msa1149370:intron | 40.0% | |
| TGCACGGAATTTGAACAAAC+TGG | + | chr7_4:30622545-30622564 | Msa1149370:intron | 40.0% | |
| ACCACTAGGACAGATTAAAG+AGG | - | chr7_4:30622677-30622696 | None:intergenic | 40.0% | |
| !!! | ATATTTAGCTTTTGGTGCCC+AGG | + | chr7_4:30622793-30622812 | Msa1149370:intron | 40.0% |
| CTAGACATTGTAGAGTGAGA+AGG | - | chr7_4:30622929-30622948 | None:intergenic | 40.0% | |
| ! | ATGTCTAGTTCGCATATTGG+TGG | + | chr7_4:30622941-30622960 | Msa1149370:intron | 40.0% |
| AATCTATCCCCAAAGGAGTA+AGG | - | chr7_4:30623181-30623200 | None:intergenic | 40.0% | |
| AAGCACAAATCTATCCCCAA+AGG | - | chr7_4:30623188-30623207 | None:intergenic | 40.0% | |
| CAATGACAGTAGATTTGGCT+TGG | - | chr7_4:30623251-30623270 | None:intergenic | 40.0% | |
| GGATGAAAAAGGAGTTACAC+TGG | + | chr7_4:30623356-30623375 | Msa1149370:CDS | 40.0% | |
| AGGAGTTACACTGGAATGTA+AGG | + | chr7_4:30623365-30623384 | Msa1149370:CDS | 40.0% | |
| AAGCCTAGTCTCTTAATGGT+CGG | + | chr7_4:30623393-30623412 | Msa1149370:CDS | 40.0% | |
| GGATGAAAAAGGAGTTACAC+TGG | + | chr7_4:30623356-30623375 | Msa1149370:CDS | 40.0% | |
| ! | TTTGGAAGGTGGTGGCAAAA+GGG | + | chr7_4:30621910-30621929 | Msa1149370:intron | 45.0% |
| TACCAGCTAAGAGAATGCCT+CGG | - | chr7_4:30621966-30621985 | None:intergenic | 45.0% | |
| CGAAGTGGTTCCCAATGAAT+AGG | - | chr7_4:30622027-30622046 | None:intergenic | 45.0% | |
| ATTGGGAACCACTTCGTTGT+TGG | + | chr7_4:30622031-30622050 | Msa1149370:intron | 45.0% | |
| GCCTCTTTAATCTGTCCTAG+TGG | + | chr7_4:30622673-30622692 | Msa1149370:intron | 45.0% | |
| AAACCAGTGTGCTACAACCT+GGG | - | chr7_4:30622813-30622832 | None:intergenic | 45.0% | |
| AGGCAAAGAAAATGTCCCCT+GGG | - | chr7_4:30623058-30623077 | None:intergenic | 45.0% | |
| GCAGTCATCCTTACTCCTTT+GGG | + | chr7_4:30623170-30623189 | Msa1149370:intron | 45.0% | |
| CAGTCATCCTTACTCCTTTG+GGG | + | chr7_4:30623171-30623190 | Msa1149370:intron | 45.0% | |
| CATCCGACCATTAAGAGACT+AGG | - | chr7_4:30623399-30623418 | None:intergenic | 45.0% | |
| CTAGTCTCTTAATGGTCGGA+TGG | + | chr7_4:30623397-30623416 | Msa1149370:CDS | 45.0% | |
| ! | TTTGGAAGGTGGTGGCAAAA+GGG | + | chr7_4:30621910-30621929 | Msa1149370:intron | 45.0% |
| TACCAGCTAAGAGAATGCCT+CGG | - | chr7_4:30621966-30621985 | None:intergenic | 45.0% | |
| CGAAGTGGTTCCCAATGAAT+AGG | - | chr7_4:30622027-30622046 | None:intergenic | 45.0% | |
| ATTGGGAACCACTTCGTTGT+TGG | + | chr7_4:30622031-30622050 | Msa1149370:intron | 45.0% | |
| GCCTCTTTAATCTGTCCTAG+TGG | + | chr7_4:30622673-30622692 | Msa1149370:intron | 45.0% | |
| AAACCAGTGTGCTACAACCT+GGG | - | chr7_4:30622813-30622832 | None:intergenic | 45.0% | |
| AGGCAAAGAAAATGTCCCCT+GGG | - | chr7_4:30623058-30623077 | None:intergenic | 45.0% | |
| GCAGTCATCCTTACTCCTTT+GGG | + | chr7_4:30623170-30623189 | Msa1149370:intron | 45.0% | |
| CAGTCATCCTTACTCCTTTG+GGG | + | chr7_4:30623171-30623190 | Msa1149370:intron | 45.0% | |
| CATCCGACCATTAAGAGACT+AGG | - | chr7_4:30623399-30623418 | None:intergenic | 45.0% | |
| CTAGTCTCTTAATGGTCGGA+TGG | + | chr7_4:30623397-30623416 | Msa1149370:CDS | 45.0% | |
| ! | CTTTGGAAGGTGGTGGCAAA+AGG | + | chr7_4:30621909-30621928 | Msa1149370:intron | 50.0% |
| ! | TTGGAAGGTGGTGGCAAAAG+GGG | + | chr7_4:30621911-30621930 | Msa1149370:intron | 50.0% |
| CTAAGAGAATGCCTCGGCAA+TGG | - | chr7_4:30621960-30621979 | None:intergenic | 50.0% | |
| TCCGTGCAACACTGCTATAG+CGG | - | chr7_4:30622533-30622552 | None:intergenic | 50.0% | |
| CAAACCAGTGTGCTACAACC+TGG | - | chr7_4:30622814-30622833 | None:intergenic | 50.0% | |
| CAGGCAAAGAAAATGTCCCC+TGG | - | chr7_4:30623059-30623078 | None:intergenic | 50.0% | |
| GTAAGGATGACTGCCCTGAA+TGG | - | chr7_4:30623164-30623183 | None:intergenic | 50.0% | |
| GGCAGTCATCCTTACTCCTT+TGG | + | chr7_4:30623169-30623188 | Msa1149370:intron | 50.0% | |
| ACAAGCCGAGTCTTACTCGT+CGG | + | chr7_4:30623328-30623347 | Msa1149370:CDS | 50.0% | |
| GTCTCTTAATGGTCGGATGG+TGG | + | chr7_4:30623400-30623419 | Msa1149370:CDS | 50.0% | |
| !! | GGTCGGATGGTGGATGAAAA+AGG | + | chr7_4:30623410-30623429 | Msa1149370:CDS | 50.0% |
| ! | CTTTGGAAGGTGGTGGCAAA+AGG | + | chr7_4:30621909-30621928 | Msa1149370:intron | 50.0% |
| ! | TTGGAAGGTGGTGGCAAAAG+GGG | + | chr7_4:30621911-30621930 | Msa1149370:intron | 50.0% |
| CTAAGAGAATGCCTCGGCAA+TGG | - | chr7_4:30621960-30621979 | None:intergenic | 50.0% | |
| TCCGTGCAACACTGCTATAG+CGG | - | chr7_4:30622533-30622552 | None:intergenic | 50.0% | |
| CAAACCAGTGTGCTACAACC+TGG | - | chr7_4:30622814-30622833 | None:intergenic | 50.0% | |
| CAGGCAAAGAAAATGTCCCC+TGG | - | chr7_4:30623059-30623078 | None:intergenic | 50.0% | |
| GTAAGGATGACTGCCCTGAA+TGG | - | chr7_4:30623164-30623183 | None:intergenic | 50.0% | |
| GGCAGTCATCCTTACTCCTT+TGG | + | chr7_4:30623169-30623188 | Msa1149370:intron | 50.0% | |
| ACAAGCCGAGTCTTACTCGT+CGG | + | chr7_4:30623328-30623347 | Msa1149370:CDS | 50.0% | |
| GTCTCTTAATGGTCGGATGG+TGG | + | chr7_4:30623400-30623419 | Msa1149370:CDS | 50.0% | |
| !! | GGTCGGATGGTGGATGAAAA+AGG | + | chr7_4:30623410-30623429 | Msa1149370:CDS | 50.0% |
| ! | TGCCGAGGCATTCTCTTAGC+TGG | + | chr7_4:30621961-30621980 | Msa1149370:intron | 55.0% |
| GCCGCTATAGCAGTGTTGCA+CGG | + | chr7_4:30622529-30622548 | Msa1149370:intron | 55.0% | |
| !! | TGCGCTTAGTCTTACGTCCC+AGG | + | chr7_4:30623038-30623057 | Msa1149370:intron | 55.0% |
| !! | GCGCTTAGTCTTACGTCCCA+GGG | + | chr7_4:30623039-30623058 | Msa1149370:intron | 55.0% |
| !! | CGCTTAGTCTTACGTCCCAG+GGG | + | chr7_4:30623040-30623059 | Msa1149370:intron | 55.0% |
| CAAGCCGAGTCTTACTCGTC+GGG | + | chr7_4:30623329-30623348 | Msa1149370:CDS | 55.0% | |
| ACCACCCGACGAGTAAGACT+CGG | - | chr7_4:30623336-30623355 | None:intergenic | 55.0% | |
| !! | CGTCGGGTGGTGGATGAAAA+AGG | + | chr7_4:30623345-30623364 | Msa1149370:CDS | 55.0% |
| ! | TGCCGAGGCATTCTCTTAGC+TGG | + | chr7_4:30621961-30621980 | Msa1149370:intron | 55.0% |
| GCCGCTATAGCAGTGTTGCA+CGG | + | chr7_4:30622529-30622548 | Msa1149370:intron | 55.0% | |
| !! | TGCGCTTAGTCTTACGTCCC+AGG | + | chr7_4:30623038-30623057 | Msa1149370:intron | 55.0% |
| !! | GCGCTTAGTCTTACGTCCCA+GGG | + | chr7_4:30623039-30623058 | Msa1149370:intron | 55.0% |
| !! | CGCTTAGTCTTACGTCCCAG+GGG | + | chr7_4:30623040-30623059 | Msa1149370:intron | 55.0% |
| CAAGCCGAGTCTTACTCGTC+GGG | + | chr7_4:30623329-30623348 | Msa1149370:CDS | 55.0% | |
| ACCACCCGACGAGTAAGACT+CGG | - | chr7_4:30623336-30623355 | None:intergenic | 55.0% | |
| !! | CGTCGGGTGGTGGATGAAAA+AGG | + | chr7_4:30623345-30623364 | Msa1149370:CDS | 55.0% |
| GTGCCCAGGTTGTAGCACAC+TGG | + | chr7_4:30622807-30622826 | Msa1149370:intron | 60.0% | |
| GAGTCTTACTCGTCGGGTGG+TGG | + | chr7_4:30623335-30623354 | Msa1149370:CDS | 60.0% | |
| GTGCCCAGGTTGTAGCACAC+TGG | + | chr7_4:30622807-30622826 | Msa1149370:intron | 60.0% | |
| GAGTCTTACTCGTCGGGTGG+TGG | + | chr7_4:30623335-30623354 | Msa1149370:CDS | 60.0% | |
| GCCGAGTCTTACTCGTCGGG+TGG | + | chr7_4:30623332-30623351 | Msa1149370:CDS | 65.0% | |
| GCCGAGTCTTACTCGTCGGG+TGG | + | chr7_4:30623332-30623351 | Msa1149370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 30621856 | 30623452 | 30621856 | ID=Msa1149370;Name=Msa1149370 |
| chr7_4 | mRNA | 30621856 | 30623452 | 30621856 | ID=Msa1149370-mRNA-1;Parent=Msa1149370;Name=Msa1149370-mRNA-1;_AED=0.62;_eAED=0.91;_QI=0|0|0|1|0|0|3|0|82 |
| chr7_4 | exon | 30621856 | 30621860 | 30621856 | ID=Msa1149370-mRNA-1:exon:7479;Parent=Msa1149370-mRNA-1 |
| chr7_4 | exon | 30622079 | 30622114 | 30622079 | ID=Msa1149370-mRNA-1:exon:7480;Parent=Msa1149370-mRNA-1 |
| chr7_4 | exon | 30623245 | 30623452 | 30623245 | ID=Msa1149370-mRNA-1:exon:7481;Parent=Msa1149370-mRNA-1 |
| chr7_4 | CDS | 30621856 | 30621860 | 30621856 | ID=Msa1149370-mRNA-1:cds;Parent=Msa1149370-mRNA-1 |
| chr7_4 | CDS | 30622079 | 30622114 | 30622079 | ID=Msa1149370-mRNA-1:cds;Parent=Msa1149370-mRNA-1 |
| chr7_4 | CDS | 30623245 | 30623452 | 30623245 | ID=Msa1149370-mRNA-1:cds;Parent=Msa1149370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
