Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1221310 | sp|Q38910|XTH23_ARATH | 75.789 | 285 | 64 | 3 | 1 | 284 | 3 | 283 | 1.34e-159 | 448 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1221310 | G7JD12 | 96.528 | 288 | 7 | 2 | 1 | 286 | 1 | 287 | 0.0 | 568 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0719020 | Msa1221310 | 0.814823 | 1.266355e-51 | -8.615850e-47 |
Msa0839770 | Msa1221310 | 0.813183 | 2.912309e-51 | -8.615850e-47 |
Msa0209360 | Msa1221310 | 0.804718 | 1.888542e-49 | -8.615850e-47 |
Msa0464670 | Msa1221310 | 0.826296 | 2.931813e-54 | -8.615850e-47 |
Msa1151030 | Msa1221310 | 0.816179 | 6.319018e-52 | -8.615850e-47 |
Msa1200270 | Msa1221310 | 0.818949 | 1.500402e-52 | -8.615850e-47 |
Msa1200290 | Msa1221310 | 0.815277 | 1.003681e-51 | -8.615850e-47 |
Msa1221290 | Msa1221310 | 0.821230 | 4.508978e-53 | -8.615850e-47 |
Msa1221310 | Msa1265290 | 0.907839 | 3.283356e-81 | -8.615850e-47 |
Msa1221310 | Msa1337450 | 0.871759 | 5.351146e-67 | -8.615850e-47 |
Msa1221310 | Msa1337460 | 0.917651 | 4.094544e-86 | -8.615850e-47 |
Msa1221310 | Msa1338240 | 0.813933 | 1.991220e-51 | -8.615850e-47 |
Msa0510120 | Msa1221310 | 0.827548 | 1.471939e-54 | -8.615850e-47 |
Msa0521820 | Msa1221310 | 0.811737 | 6.028281e-51 | -8.615850e-47 |
Msa0581370 | Msa1221310 | 0.826897 | 2.108254e-54 | -8.615850e-47 |
Msa0581380 | Msa1221310 | 0.978465 | 6.992518e-146 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1221310 | MtrunA17_Chr4g0072671 | 96.528 | 288 | 7 | 2 | 1 | 286 | 1 | 287 | 0.0 | 568 |
Msa1221310 | MtrunA17_Chr4g0072611 | 82.500 | 280 | 43 | 3 | 5 | 284 | 7 | 280 | 5.37e-172 | 476 |
Msa1221310 | MtrunA17_Chr7g0258911 | 82.624 | 282 | 43 | 3 | 3 | 284 | 4 | 279 | 1.99e-168 | 468 |
Msa1221310 | MtrunA17_Chr4g0071341 | 77.736 | 265 | 58 | 1 | 21 | 285 | 19 | 282 | 4.69e-152 | 426 |
Msa1221310 | MtrunA17_Chr4g0072601 | 72.982 | 285 | 74 | 3 | 1 | 284 | 1 | 283 | 3.67e-150 | 421 |
Msa1221310 | MtrunA17_Chr2g0299061 | 70.213 | 282 | 76 | 3 | 7 | 284 | 9 | 286 | 3.59e-145 | 409 |
Msa1221310 | MtrunA17_Chr8g0377841 | 69.310 | 290 | 78 | 2 | 1 | 286 | 1 | 283 | 1.65e-144 | 407 |
Msa1221310 | MtrunA17_Chr3g0122021 | 70.175 | 285 | 76 | 2 | 1 | 284 | 1 | 277 | 4.03e-143 | 403 |
Msa1221310 | MtrunA17_Chr3g0122031 | 70.175 | 285 | 76 | 2 | 1 | 284 | 1 | 277 | 5.35e-143 | 403 |
Msa1221310 | MtrunA17_Chr4g0072681 | 73.984 | 246 | 56 | 3 | 48 | 286 | 1 | 245 | 2.58e-132 | 375 |
Msa1221310 | MtrunA17_Chr8g0389641 | 60.490 | 286 | 67 | 3 | 1 | 284 | 1 | 242 | 1.03e-120 | 345 |
Msa1221310 | MtrunA17_Chr6g0486581 | 52.962 | 287 | 128 | 5 | 1 | 284 | 1 | 283 | 2.52e-104 | 305 |
Msa1221310 | MtrunA17_Chr5g0443391 | 52.982 | 285 | 126 | 3 | 1 | 284 | 1 | 278 | 1.07e-102 | 301 |
Msa1221310 | MtrunA17_Chr6g0461761 | 56.538 | 260 | 111 | 2 | 27 | 286 | 32 | 289 | 3.14e-101 | 298 |
Msa1221310 | MtrunA17_Chr7g0252631 | 52.414 | 290 | 129 | 4 | 1 | 284 | 1 | 287 | 1.84e-100 | 296 |
Msa1221310 | MtrunA17_Chr6g0461731 | 55.985 | 259 | 112 | 2 | 27 | 285 | 55 | 311 | 2.56e-100 | 296 |
Msa1221310 | MtrunA17_Chr7g0252621 | 52.414 | 290 | 129 | 4 | 1 | 284 | 1 | 287 | 4.26e-100 | 295 |
Msa1221310 | MtrunA17_Chr3g0096651 | 53.053 | 262 | 116 | 3 | 24 | 284 | 27 | 282 | 4.74e-99 | 292 |
Msa1221310 | MtrunA17_Chr7g0252601 | 54.580 | 262 | 109 | 3 | 27 | 284 | 32 | 287 | 1.07e-98 | 291 |
Msa1221310 | MtrunA17_Chr4g0054431 | 49.821 | 279 | 134 | 4 | 9 | 284 | 12 | 287 | 1.69e-97 | 288 |
Msa1221310 | MtrunA17_Chr4g0054451 | 49.291 | 282 | 133 | 5 | 9 | 284 | 12 | 289 | 4.43e-97 | 287 |
Msa1221310 | MtrunA17_Chr2g0323161 | 47.782 | 293 | 139 | 6 | 1 | 285 | 1 | 287 | 6.59e-95 | 281 |
Msa1221310 | MtrunA17_Chr4g0023961 | 46.939 | 294 | 144 | 5 | 1 | 286 | 1 | 290 | 8.17e-94 | 279 |
Msa1221310 | MtrunA17_Chr1g0206681 | 49.254 | 268 | 128 | 3 | 22 | 285 | 29 | 292 | 8.05e-93 | 276 |
Msa1221310 | MtrunA17_Chr1g0206081 | 45.238 | 294 | 145 | 6 | 3 | 285 | 7 | 295 | 8.16e-86 | 259 |
Msa1221310 | MtrunA17_Chr8g0390201 | 56.633 | 196 | 81 | 2 | 92 | 284 | 15 | 209 | 1.74e-78 | 237 |
Msa1221310 | MtrunA17_Chr8g0340001 | 46.218 | 238 | 107 | 5 | 58 | 286 | 8 | 233 | 9.04e-68 | 210 |
Msa1221310 | MtrunA17_Chr4g0072641 | 72.868 | 129 | 19 | 1 | 157 | 285 | 37 | 149 | 7.06e-63 | 195 |
Msa1221310 | MtrunA17_Chr4g0028221 | 42.322 | 267 | 135 | 9 | 26 | 284 | 49 | 304 | 1.16e-61 | 197 |
Msa1221310 | MtrunA17_Chr7g0264731 | 41.418 | 268 | 138 | 7 | 26 | 285 | 36 | 292 | 2.18e-61 | 196 |
Msa1221310 | MtrunA17_Chr2g0327411 | 40.149 | 269 | 139 | 8 | 26 | 284 | 53 | 309 | 3.37e-59 | 191 |
Msa1221310 | MtrunA17_Chr2g0303861 | 38.754 | 289 | 164 | 7 | 1 | 286 | 3 | 281 | 5.38e-59 | 189 |
Msa1221310 | MtrunA17_Chr1g0180451 | 37.671 | 292 | 162 | 8 | 1 | 284 | 15 | 294 | 2.91e-58 | 188 |
Msa1221310 | MtrunA17_Chr2g0303721 | 38.163 | 283 | 151 | 8 | 7 | 282 | 10 | 275 | 4.63e-55 | 179 |
Msa1221310 | MtrunA17_Chr8g0375981 | 37.828 | 267 | 152 | 7 | 27 | 285 | 31 | 291 | 4.87e-55 | 181 |
Msa1221310 | MtrunA17_Chr1g0161951 | 36.934 | 287 | 166 | 8 | 7 | 285 | 13 | 292 | 6.88e-55 | 180 |
Msa1221310 | MtrunA17_Chr7g0235541 | 45.872 | 218 | 100 | 7 | 74 | 284 | 1 | 207 | 6.03e-54 | 174 |
Msa1221310 | MtrunA17_Chr8g0365231 | 36.431 | 269 | 148 | 7 | 31 | 284 | 50 | 310 | 3.47e-51 | 170 |
Msa1221310 | MtrunA17_Chr5g0410621 | 35.448 | 268 | 159 | 8 | 27 | 284 | 42 | 305 | 1.90e-48 | 164 |
Msa1221310 | MtrunA17_Chr8g0382041 | 34.909 | 275 | 150 | 11 | 27 | 285 | 34 | 295 | 1.13e-42 | 149 |
Msa1221310 | MtrunA17_Chr4g0072631 | 62.651 | 83 | 29 | 1 | 5 | 87 | 11 | 91 | 6.19e-25 | 95.9 |
Msa1221310 | MtrunA17_Chr8g0374231 | 45.370 | 108 | 48 | 6 | 183 | 285 | 1 | 102 | 2.96e-22 | 89.0 |
Msa1221310 | MtrunA17_Chr8g0390181 | 48.864 | 88 | 43 | 1 | 7 | 94 | 8 | 93 | 2.71e-19 | 80.9 |
Msa1221310 | MtrunA17_Chr8g0350711 | 33.333 | 177 | 110 | 4 | 46 | 220 | 51 | 221 | 4.72e-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1221310 | AT4G25810.1 | 75.789 | 285 | 64 | 3 | 1 | 284 | 3 | 283 | 1.37e-160 | 448 |
Msa1221310 | AT5G57560.1 | 72.887 | 284 | 71 | 3 | 3 | 284 | 2 | 281 | 4.07e-156 | 437 |
Msa1221310 | AT5G57550.1 | 67.820 | 289 | 85 | 3 | 1 | 286 | 1 | 284 | 1.41e-147 | 415 |
Msa1221310 | AT4G30270.1 | 68.592 | 277 | 71 | 2 | 9 | 285 | 6 | 266 | 3.24e-143 | 404 |
Msa1221310 | AT5G48070.1 | 65.343 | 277 | 89 | 3 | 10 | 285 | 12 | 282 | 1.70e-139 | 394 |
Msa1221310 | AT2G18800.1 | 63.636 | 297 | 96 | 4 | 1 | 285 | 1 | 297 | 5.24e-139 | 394 |
Msa1221310 | AT3G23730.1 | 66.071 | 280 | 90 | 3 | 9 | 284 | 8 | 286 | 2.03e-137 | 390 |
Msa1221310 | AT4G14130.1 | 64.912 | 285 | 98 | 2 | 1 | 284 | 1 | 284 | 9.20e-136 | 385 |
Msa1221310 | AT5G57530.1 | 66.791 | 268 | 79 | 2 | 21 | 284 | 21 | 282 | 2.21e-132 | 377 |
Msa1221310 | AT4G30280.1 | 62.587 | 286 | 100 | 3 | 1 | 285 | 3 | 282 | 1.35e-129 | 369 |
Msa1221310 | AT5G57540.1 | 65.779 | 263 | 84 | 2 | 24 | 284 | 23 | 281 | 2.85e-129 | 369 |
Msa1221310 | AT4G30290.1 | 63.345 | 281 | 94 | 4 | 6 | 285 | 5 | 277 | 1.15e-127 | 364 |
Msa1221310 | AT1G65310.2 | 65.299 | 268 | 86 | 3 | 19 | 285 | 43 | 304 | 8.10e-127 | 363 |
Msa1221310 | AT1G65310.1 | 65.299 | 268 | 86 | 3 | 19 | 285 | 21 | 282 | 1.20e-126 | 362 |
Msa1221310 | AT4G25820.1 | 65.918 | 267 | 85 | 2 | 20 | 284 | 23 | 285 | 1.55e-126 | 362 |
Msa1221310 | AT5G13870.2 | 52.448 | 286 | 132 | 3 | 1 | 284 | 4 | 287 | 4.37e-99 | 292 |
Msa1221310 | AT5G13870.1 | 52.448 | 286 | 132 | 3 | 1 | 284 | 4 | 287 | 4.37e-99 | 292 |
Msa1221310 | AT5G13870.3 | 52.448 | 286 | 132 | 3 | 1 | 284 | 4 | 287 | 4.37e-99 | 292 |
Msa1221310 | AT5G65730.1 | 46.454 | 282 | 147 | 3 | 4 | 284 | 12 | 290 | 7.31e-95 | 282 |
Msa1221310 | AT4G28850.1 | 47.887 | 284 | 141 | 3 | 6 | 285 | 8 | 288 | 6.76e-94 | 279 |
Msa1221310 | AT2G06850.1 | 53.488 | 258 | 118 | 2 | 27 | 284 | 35 | 290 | 1.22e-93 | 279 |
Msa1221310 | AT4G37800.1 | 48.399 | 281 | 140 | 4 | 6 | 285 | 14 | 290 | 5.78e-93 | 277 |
Msa1221310 | AT4G03210.1 | 49.110 | 281 | 136 | 5 | 9 | 286 | 10 | 286 | 1.38e-92 | 276 |
Msa1221310 | AT2G14620.1 | 48.188 | 276 | 136 | 5 | 14 | 285 | 23 | 295 | 3.66e-89 | 268 |
Msa1221310 | AT2G06850.2 | 56.140 | 228 | 98 | 2 | 57 | 284 | 5 | 230 | 2.60e-88 | 263 |
Msa1221310 | AT4G03210.2 | 53.200 | 250 | 108 | 5 | 39 | 286 | 16 | 258 | 7.46e-88 | 263 |
Msa1221310 | AT1G11545.1 | 46.622 | 296 | 139 | 8 | 2 | 285 | 12 | 300 | 5.88e-87 | 262 |
Msa1221310 | AT4G13090.1 | 45.583 | 283 | 144 | 6 | 8 | 284 | 10 | 288 | 6.77e-79 | 241 |
Msa1221310 | AT2G14620.2 | 50.649 | 231 | 108 | 4 | 58 | 285 | 18 | 245 | 3.18e-78 | 238 |
Msa1221310 | AT4G13080.1 | 45.070 | 284 | 147 | 6 | 5 | 284 | 13 | 291 | 1.93e-76 | 235 |
Msa1221310 | AT2G14620.3 | 51.351 | 222 | 102 | 4 | 67 | 285 | 16 | 234 | 1.97e-76 | 233 |
Msa1221310 | AT3G25050.1 | 45.211 | 261 | 134 | 6 | 27 | 284 | 35 | 289 | 1.18e-74 | 230 |
Msa1221310 | AT2G36870.1 | 42.322 | 267 | 135 | 6 | 26 | 284 | 42 | 297 | 1.67e-62 | 199 |
Msa1221310 | AT3G44990.1 | 42.105 | 266 | 135 | 7 | 27 | 284 | 39 | 293 | 2.23e-61 | 196 |
Msa1221310 | AT1G10550.1 | 36.015 | 261 | 150 | 6 | 38 | 284 | 52 | 309 | 3.96e-52 | 173 |
Msa1221310 | AT1G32170.1 | 33.775 | 302 | 175 | 10 | 1 | 285 | 1 | 294 | 2.80e-50 | 169 |
Msa1221310 | AT1G14720.1 | 35.955 | 267 | 159 | 7 | 26 | 285 | 30 | 291 | 8.91e-50 | 167 |
Msa1221310 | AT2G01850.1 | 31.987 | 297 | 184 | 8 | 1 | 285 | 1 | 291 | 5.05e-48 | 163 |
Msa1221310 | AT3G48580.1 | 36.653 | 251 | 141 | 7 | 34 | 284 | 41 | 273 | 1.45e-44 | 152 |
Msa1221310 | AT4G18990.1 | 33.438 | 317 | 160 | 12 | 12 | 285 | 5 | 313 | 2.70e-44 | 154 |
Msa1221310 | AT3G48580.3 | 35.526 | 228 | 130 | 6 | 57 | 284 | 4 | 214 | 1.00e-38 | 135 |
Msa1221310 | AT4G18990.2 | 34.722 | 216 | 113 | 8 | 92 | 285 | 30 | 239 | 4.51e-35 | 128 |
Msa1221310 | AT2G36870.2 | 46.043 | 139 | 65 | 3 | 26 | 156 | 42 | 178 | 3.38e-32 | 117 |
Msa1221310 | AT3G48580.2 | 31.474 | 251 | 134 | 8 | 34 | 284 | 41 | 253 | 1.01e-27 | 108 |
Find 64 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGGCGTTGTTGAGTATTT+TGG | 0.226569 | 8_1:-84862730 | None:intergenic |
CTGTAGATGGAACTCCAATT+AGG | 0.235182 | 8_1:+84863303 | Msa1221310:CDS |
CTCCATTTACCGCTTCTTAC+AGG | 0.238448 | 8_1:+84863456 | Msa1221310:CDS |
ATGTTCTTGAATTCCCTAAT+TGG | 0.259290 | 8_1:-84863317 | None:intergenic |
TGAGAATCTATTCTAGTCTT+TGG | 0.265403 | 8_1:+84863378 | Msa1221310:CDS |
TGCTTCTTATTCCTCTGCTT+TGG | 0.286665 | 8_1:+84862637 | Msa1221310:CDS |
GAGATAGACTTTGAATTCTT+AGG | 0.299139 | 8_1:+84863013 | Msa1221310:CDS |
TTCCTGTAAGAAGCGGTAAA+TGG | 0.328030 | 8_1:-84863458 | None:intergenic |
GTCTTTGGAATGCTGATGAT+TGG | 0.342081 | 8_1:+84863393 | Msa1221310:CDS |
TGTAGATGGAACTCCAATTA+GGG | 0.398243 | 8_1:+84863304 | Msa1221310:CDS |
CTTGACAAAGCCTCTGGCTC+TGG | 0.398860 | 8_1:+84862768 | Msa1221310:CDS |
GTTCCATGTACAAGCATTGT+TGG | 0.399945 | 8_1:-84863489 | None:intergenic |
ATCTAGTGAGTGCATTCAAC+TGG | 0.406472 | 8_1:-84863671 | None:intergenic |
ATGCAGATTAAGCTTGTTCC+AGG | 0.407701 | 8_1:+84862831 | Msa1221310:CDS |
GCTCTCTGTTACCTTTCCCT+TGG | 0.417997 | 8_1:-84863081 | None:intergenic |
AGACTAGAATAGATTCTCAT+TGG | 0.441045 | 8_1:-84863374 | None:intergenic |
AGAAGCGGTAAATGGAGCTT+TGG | 0.460589 | 8_1:-84863450 | None:intergenic |
TCACAACAGCTTGACTCAAC+AGG | 0.461793 | 8_1:+84863566 | Msa1221310:CDS |
AGATCTTAGTCATATACTAT+AGG | 0.464222 | 8_1:+84863690 | Msa1221310:exon |
TAGAATAGATTCTCATTGGT+TGG | 0.468992 | 8_1:-84863370 | None:intergenic |
TCTTTGGAATGCTGATGATT+GGG | 0.473720 | 8_1:+84863394 | Msa1221310:CDS |
CTTGTTCCAGGCAACTCTGC+TGG | 0.477831 | 8_1:+84862843 | Msa1221310:CDS |
CTGTCTCTTGACAAAGCCTC+TGG | 0.485728 | 8_1:+84862762 | Msa1221310:CDS |
CCCATGTAATCTGAAAATCT+TGG | 0.491907 | 8_1:-84862695 | None:intergenic |
ACATTGGTGTGAAGGATGTA+AGG | 0.496890 | 8_1:-84863052 | None:intergenic |
CAGGTCTGCAGAGGCTGAGG+TGG | 0.507933 | 8_1:+84863585 | Msa1221310:CDS |
GTGGACTTGTTAAGACAGAT+TGG | 0.508499 | 8_1:+84863426 | Msa1221310:CDS |
CAACAGGTCTGCAGAGGCTG+AGG | 0.508970 | 8_1:+84863582 | Msa1221310:CDS |
CACACCAATGTCTTTAGCCA+AGG | 0.515110 | 8_1:+84863064 | Msa1221310:CDS |
TTTCAGATTACATGGGGAGA+TGG | 0.522270 | 8_1:+84862702 | Msa1221310:CDS |
ACAGTGCCAGCAGAGTTGCC+TGG | 0.527429 | 8_1:-84862849 | None:intergenic |
AAGAGACAGAGTAAGAAGAT+TGG | 0.527904 | 8_1:-84862748 | None:intergenic |
TCACTTCAGCTATCATCAAA+AGG | 0.530973 | 8_1:+84862977 | Msa1221310:intron |
ATGCCAACAATGCTTGTACA+TGG | 0.537452 | 8_1:+84863486 | Msa1221310:CDS |
TTCACACATACTCAATTCTG+TGG | 0.546538 | 8_1:+84863140 | Msa1221310:CDS |
CATTCAACTGGAAGGCCTTG+TGG | 0.552461 | 8_1:-84863659 | None:intergenic |
TTTCCCTTGGCTAAAGACAT+TGG | 0.555935 | 8_1:-84863068 | None:intergenic |
CAAAAGCCTCTGCTTCCTCA+TGG | 0.559152 | 8_1:+84863540 | Msa1221310:CDS |
ATCATCAAAAGGAGGTGCAT+GGG | 0.570048 | 8_1:+84862988 | Msa1221310:CDS |
AATAATGTAGCATGTGCTGC+TGG | 0.571781 | 8_1:+84862663 | Msa1221310:CDS |
TATCATCAAAAGGAGGTGCA+TGG | 0.582020 | 8_1:+84862987 | Msa1221310:CDS |
CTGCAGTTGGGTCAAACCAA+AGG | 0.586715 | 8_1:-84863114 | None:intergenic |
AATTAGGGAATTCAAGAACA+TGG | 0.587989 | 8_1:+84863319 | Msa1221310:CDS |
AGGTCTGCAGAGGCTGAGGT+GGG | 0.596207 | 8_1:+84863586 | Msa1221310:CDS |
GATGATTGGGCTACAAGAGG+TGG | 0.596350 | 8_1:+84863407 | Msa1221310:CDS |
GGCTAAAGACATTGGTGTGA+AGG | 0.601842 | 8_1:-84863060 | None:intergenic |
ACACCAATGTCTTTAGCCAA+GGG | 0.604485 | 8_1:+84863065 | Msa1221310:CDS |
GGATTGAAAGCCAGAGCCAG+AGG | 0.605791 | 8_1:-84862778 | None:intergenic |
ATGTGTGAAAATCTGCAGTT+GGG | 0.606525 | 8_1:-84863126 | None:intergenic |
AATGCTTGTACATGGAACAA+TGG | 0.607069 | 8_1:+84863494 | Msa1221310:CDS |
AGTACTTACACAATACGTTG+TGG | 0.616337 | 8_1:-84863166 | None:intergenic |
TATGTGTGAAAATCTGCAGT+TGG | 0.616665 | 8_1:-84863127 | None:intergenic |
TTGACTCAACAGGTCTGCAG+AGG | 0.621733 | 8_1:+84863576 | Msa1221310:CDS |
TTCAAGAACATGGAATCAAG+TGG | 0.625602 | 8_1:+84863329 | Msa1221310:CDS |
AATGTCTTTAGCCAAGGGAA+AGG | 0.633429 | 8_1:+84863070 | Msa1221310:CDS |
TGATAGCCATGAGGAAGCAG+AGG | 0.634325 | 8_1:-84863546 | None:intergenic |
AGTGAGTGCATTCAACTGGA+AGG | 0.634779 | 8_1:-84863667 | None:intergenic |
ATTGAAATTCCTGTAAGAAG+CGG | 0.652103 | 8_1:-84863465 | None:intergenic |
GAATTCTTAGGAAATTTGAG+TGG | 0.658307 | 8_1:+84863025 | Msa1221310:CDS |
CTTCAGCTATCATCAAAAGG+AGG | 0.677139 | 8_1:+84862980 | Msa1221310:intron |
GCTGATGATTGGGCTACAAG+AGG | 0.684485 | 8_1:+84863404 | Msa1221310:CDS |
ACATTATTAATCCAAAGCAG+AGG | 0.697684 | 8_1:-84862648 | None:intergenic |
AAGCTGTTGTGATAGCCATG+AGG | 0.744355 | 8_1:-84863555 | None:intergenic |
GATAAGAAGAGATTTCCACA+AGG | 0.790444 | 8_1:+84863644 | Msa1221310:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCCAAAAATGAATACTTATT+TGG | + | chr8_1:84862798-84862817 | Msa1221310:CDS | 20.0% |
!! | AAAAAAAACATTACTTGTGT+TGG | + | chr8_1:84863235-84863254 | Msa1221310:intron | 20.0% |
!! | TCCAAAAATGAATACTTATT+TGG | + | chr8_1:84862798-84862817 | Msa1221310:CDS | 20.0% |
!! | AAAAAAAACATTACTTGTGT+TGG | + | chr8_1:84863235-84863254 | Msa1221310:intron | 20.0% |
!! | GCCAAATAAGTATTCATTTT+TGG | - | chr8_1:84862802-84862821 | None:intergenic | 25.0% |
! | AGATCTTAGTCATATACTAT+AGG | + | chr8_1:84863690-84863709 | Msa1221310:exon | 25.0% |
!! | GCCAAATAAGTATTCATTTT+TGG | - | chr8_1:84862802-84862821 | None:intergenic | 25.0% |
! | AGATCTTAGTCATATACTAT+AGG | + | chr8_1:84863690-84863709 | Msa1221310:exon | 25.0% |
ACATTATTAATCCAAAGCAG+AGG | - | chr8_1:84862651-84862670 | None:intergenic | 30.0% | |
! | ACCAAGATTTTCAGATTACA+TGG | + | chr8_1:84862694-84862713 | Msa1221310:CDS | 30.0% |
! | CCAAGATTTTCAGATTACAT+GGG | + | chr8_1:84862695-84862714 | Msa1221310:CDS | 30.0% |
! | CAAGATTTTCAGATTACATG+GGG | + | chr8_1:84862696-84862715 | Msa1221310:CDS | 30.0% |
GAGATAGACTTTGAATTCTT+AGG | + | chr8_1:84863013-84863032 | Msa1221310:CDS | 30.0% | |
GAATTCTTAGGAAATTTGAG+TGG | + | chr8_1:84863025-84863044 | Msa1221310:CDS | 30.0% | |
!! | TTTTTCAGTTTCTCTGTAGA+TGG | + | chr8_1:84863290-84863309 | Msa1221310:intron | 30.0% |
ATGTTCTTGAATTCCCTAAT+TGG | - | chr8_1:84863320-84863339 | None:intergenic | 30.0% | |
AATTAGGGAATTCAAGAACA+TGG | + | chr8_1:84863319-84863338 | Msa1221310:CDS | 30.0% | |
!!! | ATTCTCATTGGTTGGTTTTT+GGG | - | chr8_1:84863365-84863384 | None:intergenic | 30.0% |
TAGAATAGATTCTCATTGGT+TGG | - | chr8_1:84863373-84863392 | None:intergenic | 30.0% | |
AGACTAGAATAGATTCTCAT+TGG | - | chr8_1:84863377-84863396 | None:intergenic | 30.0% | |
! | TGAGAATCTATTCTAGTCTT+TGG | + | chr8_1:84863378-84863397 | Msa1221310:CDS | 30.0% |
ATTGAAATTCCTGTAAGAAG+CGG | - | chr8_1:84863468-84863487 | None:intergenic | 30.0% | |
ACATTATTAATCCAAAGCAG+AGG | - | chr8_1:84862651-84862670 | None:intergenic | 30.0% | |
! | ACCAAGATTTTCAGATTACA+TGG | + | chr8_1:84862694-84862713 | Msa1221310:CDS | 30.0% |
! | CCAAGATTTTCAGATTACAT+GGG | + | chr8_1:84862695-84862714 | Msa1221310:CDS | 30.0% |
! | CAAGATTTTCAGATTACATG+GGG | + | chr8_1:84862696-84862715 | Msa1221310:CDS | 30.0% |
GAGATAGACTTTGAATTCTT+AGG | + | chr8_1:84863013-84863032 | Msa1221310:CDS | 30.0% | |
GAATTCTTAGGAAATTTGAG+TGG | + | chr8_1:84863025-84863044 | Msa1221310:CDS | 30.0% | |
!! | TTTTTCAGTTTCTCTGTAGA+TGG | + | chr8_1:84863290-84863309 | Msa1221310:intron | 30.0% |
ATGTTCTTGAATTCCCTAAT+TGG | - | chr8_1:84863320-84863339 | None:intergenic | 30.0% | |
AATTAGGGAATTCAAGAACA+TGG | + | chr8_1:84863319-84863338 | Msa1221310:CDS | 30.0% | |
!!! | ATTCTCATTGGTTGGTTTTT+GGG | - | chr8_1:84863365-84863384 | None:intergenic | 30.0% |
TAGAATAGATTCTCATTGGT+TGG | - | chr8_1:84863373-84863392 | None:intergenic | 30.0% | |
AGACTAGAATAGATTCTCAT+TGG | - | chr8_1:84863377-84863396 | None:intergenic | 30.0% | |
! | TGAGAATCTATTCTAGTCTT+TGG | + | chr8_1:84863378-84863397 | Msa1221310:CDS | 30.0% |
ATTGAAATTCCTGTAAGAAG+CGG | - | chr8_1:84863468-84863487 | None:intergenic | 30.0% | |
CCCATGTAATCTGAAAATCT+TGG | - | chr8_1:84862698-84862717 | None:intergenic | 35.0% | |
! | ATTGGCGTTGTTGAGTATTT+TGG | - | chr8_1:84862733-84862752 | None:intergenic | 35.0% |
AAGAGACAGAGTAAGAAGAT+TGG | - | chr8_1:84862751-84862770 | None:intergenic | 35.0% | |
TCACTTCAGCTATCATCAAA+AGG | + | chr8_1:84862977-84862996 | Msa1221310:intron | 35.0% | |
! | GAGAGCAACAATTTTACCTT+TGG | + | chr8_1:84863098-84863117 | Msa1221310:CDS | 35.0% |
ATGTGTGAAAATCTGCAGTT+GGG | - | chr8_1:84863129-84863148 | None:intergenic | 35.0% | |
TATGTGTGAAAATCTGCAGT+TGG | - | chr8_1:84863130-84863149 | None:intergenic | 35.0% | |
TTCACACATACTCAATTCTG+TGG | + | chr8_1:84863140-84863159 | Msa1221310:CDS | 35.0% | |
AGTACTTACACAATACGTTG+TGG | - | chr8_1:84863169-84863188 | None:intergenic | 35.0% | |
TGTAGATGGAACTCCAATTA+GGG | + | chr8_1:84863304-84863323 | Msa1221310:CDS | 35.0% | |
TTCAAGAACATGGAATCAAG+TGG | + | chr8_1:84863329-84863348 | Msa1221310:CDS | 35.0% | |
!!! | TTCTCATTGGTTGGTTTTTG+GGG | - | chr8_1:84863364-84863383 | None:intergenic | 35.0% |
!!! | GATTCTCATTGGTTGGTTTT+TGG | - | chr8_1:84863366-84863385 | None:intergenic | 35.0% |
!! | TCTTTGGAATGCTGATGATT+GGG | + | chr8_1:84863394-84863413 | Msa1221310:CDS | 35.0% |
AATGCTTGTACATGGAACAA+TGG | + | chr8_1:84863494-84863513 | Msa1221310:CDS | 35.0% | |
GATAAGAAGAGATTTCCACA+AGG | + | chr8_1:84863644-84863663 | Msa1221310:CDS | 35.0% | |
CCCATGTAATCTGAAAATCT+TGG | - | chr8_1:84862698-84862717 | None:intergenic | 35.0% | |
! | ATTGGCGTTGTTGAGTATTT+TGG | - | chr8_1:84862733-84862752 | None:intergenic | 35.0% |
AAGAGACAGAGTAAGAAGAT+TGG | - | chr8_1:84862751-84862770 | None:intergenic | 35.0% | |
TCACTTCAGCTATCATCAAA+AGG | + | chr8_1:84862977-84862996 | Msa1221310:intron | 35.0% | |
! | GAGAGCAACAATTTTACCTT+TGG | + | chr8_1:84863098-84863117 | Msa1221310:CDS | 35.0% |
ATGTGTGAAAATCTGCAGTT+GGG | - | chr8_1:84863129-84863148 | None:intergenic | 35.0% | |
TATGTGTGAAAATCTGCAGT+TGG | - | chr8_1:84863130-84863149 | None:intergenic | 35.0% | |
TTCACACATACTCAATTCTG+TGG | + | chr8_1:84863140-84863159 | Msa1221310:CDS | 35.0% | |
AGTACTTACACAATACGTTG+TGG | - | chr8_1:84863169-84863188 | None:intergenic | 35.0% | |
TGTAGATGGAACTCCAATTA+GGG | + | chr8_1:84863304-84863323 | Msa1221310:CDS | 35.0% | |
TTCAAGAACATGGAATCAAG+TGG | + | chr8_1:84863329-84863348 | Msa1221310:CDS | 35.0% | |
!!! | TTCTCATTGGTTGGTTTTTG+GGG | - | chr8_1:84863364-84863383 | None:intergenic | 35.0% |
!!! | GATTCTCATTGGTTGGTTTT+TGG | - | chr8_1:84863366-84863385 | None:intergenic | 35.0% |
!! | TCTTTGGAATGCTGATGATT+GGG | + | chr8_1:84863394-84863413 | Msa1221310:CDS | 35.0% |
AATGCTTGTACATGGAACAA+TGG | + | chr8_1:84863494-84863513 | Msa1221310:CDS | 35.0% | |
GATAAGAAGAGATTTCCACA+AGG | + | chr8_1:84863644-84863663 | Msa1221310:CDS | 35.0% | |
TGCTTCTTATTCCTCTGCTT+TGG | + | chr8_1:84862637-84862656 | Msa1221310:CDS | 40.0% | |
AATAATGTAGCATGTGCTGC+TGG | + | chr8_1:84862663-84862682 | Msa1221310:CDS | 40.0% | |
TTTCAGATTACATGGGGAGA+TGG | + | chr8_1:84862702-84862721 | Msa1221310:CDS | 40.0% | |
! | ATGCAGATTAAGCTTGTTCC+AGG | + | chr8_1:84862831-84862850 | Msa1221310:CDS | 40.0% |
CTTCAGCTATCATCAAAAGG+AGG | + | chr8_1:84862980-84862999 | Msa1221310:intron | 40.0% | |
! | TATCATCAAAAGGAGGTGCA+TGG | + | chr8_1:84862987-84863006 | Msa1221310:CDS | 40.0% |
! | ATCATCAAAAGGAGGTGCAT+GGG | + | chr8_1:84862988-84863007 | Msa1221310:CDS | 40.0% |
ACATTGGTGTGAAGGATGTA+AGG | - | chr8_1:84863055-84863074 | None:intergenic | 40.0% | |
ACACCAATGTCTTTAGCCAA+GGG | + | chr8_1:84863065-84863084 | Msa1221310:CDS | 40.0% | |
TTTCCCTTGGCTAAAGACAT+TGG | - | chr8_1:84863071-84863090 | None:intergenic | 40.0% | |
AATGTCTTTAGCCAAGGGAA+AGG | + | chr8_1:84863070-84863089 | Msa1221310:CDS | 40.0% | |
CTGTAGATGGAACTCCAATT+AGG | + | chr8_1:84863303-84863322 | Msa1221310:CDS | 40.0% | |
!!! | ATTGGTTGGTTTTTGGGGAA+TGG | - | chr8_1:84863359-84863378 | None:intergenic | 40.0% |
!! | GTCTTTGGAATGCTGATGAT+TGG | + | chr8_1:84863393-84863412 | Msa1221310:CDS | 40.0% |
!! | GTGGACTTGTTAAGACAGAT+TGG | + | chr8_1:84863426-84863445 | Msa1221310:CDS | 40.0% |
TTCCTGTAAGAAGCGGTAAA+TGG | - | chr8_1:84863461-84863480 | None:intergenic | 40.0% | |
ATGCCAACAATGCTTGTACA+TGG | + | chr8_1:84863486-84863505 | Msa1221310:CDS | 40.0% | |
! | GTTCCATGTACAAGCATTGT+TGG | - | chr8_1:84863492-84863511 | None:intergenic | 40.0% |
ATCTAGTGAGTGCATTCAAC+TGG | - | chr8_1:84863674-84863693 | None:intergenic | 40.0% | |
TGCTTCTTATTCCTCTGCTT+TGG | + | chr8_1:84862637-84862656 | Msa1221310:CDS | 40.0% | |
AATAATGTAGCATGTGCTGC+TGG | + | chr8_1:84862663-84862682 | Msa1221310:CDS | 40.0% | |
TTTCAGATTACATGGGGAGA+TGG | + | chr8_1:84862702-84862721 | Msa1221310:CDS | 40.0% | |
! | ATGCAGATTAAGCTTGTTCC+AGG | + | chr8_1:84862831-84862850 | Msa1221310:CDS | 40.0% |
CTTCAGCTATCATCAAAAGG+AGG | + | chr8_1:84862980-84862999 | Msa1221310:intron | 40.0% | |
! | TATCATCAAAAGGAGGTGCA+TGG | + | chr8_1:84862987-84863006 | Msa1221310:CDS | 40.0% |
! | ATCATCAAAAGGAGGTGCAT+GGG | + | chr8_1:84862988-84863007 | Msa1221310:CDS | 40.0% |
ACATTGGTGTGAAGGATGTA+AGG | - | chr8_1:84863055-84863074 | None:intergenic | 40.0% | |
ACACCAATGTCTTTAGCCAA+GGG | + | chr8_1:84863065-84863084 | Msa1221310:CDS | 40.0% | |
TTTCCCTTGGCTAAAGACAT+TGG | - | chr8_1:84863071-84863090 | None:intergenic | 40.0% | |
AATGTCTTTAGCCAAGGGAA+AGG | + | chr8_1:84863070-84863089 | Msa1221310:CDS | 40.0% | |
CTGTAGATGGAACTCCAATT+AGG | + | chr8_1:84863303-84863322 | Msa1221310:CDS | 40.0% | |
!!! | ATTGGTTGGTTTTTGGGGAA+TGG | - | chr8_1:84863359-84863378 | None:intergenic | 40.0% |
!! | GTCTTTGGAATGCTGATGAT+TGG | + | chr8_1:84863393-84863412 | Msa1221310:CDS | 40.0% |
!! | GTGGACTTGTTAAGACAGAT+TGG | + | chr8_1:84863426-84863445 | Msa1221310:CDS | 40.0% |
TTCCTGTAAGAAGCGGTAAA+TGG | - | chr8_1:84863461-84863480 | None:intergenic | 40.0% | |
ATGCCAACAATGCTTGTACA+TGG | + | chr8_1:84863486-84863505 | Msa1221310:CDS | 40.0% | |
! | GTTCCATGTACAAGCATTGT+TGG | - | chr8_1:84863492-84863511 | None:intergenic | 40.0% |
ATCTAGTGAGTGCATTCAAC+TGG | - | chr8_1:84863674-84863693 | None:intergenic | 40.0% | |
GGCTAAAGACATTGGTGTGA+AGG | - | chr8_1:84863063-84863082 | None:intergenic | 45.0% | |
CACACCAATGTCTTTAGCCA+AGG | + | chr8_1:84863064-84863083 | Msa1221310:CDS | 45.0% | |
AGAAGCGGTAAATGGAGCTT+TGG | - | chr8_1:84863453-84863472 | None:intergenic | 45.0% | |
CTCCATTTACCGCTTCTTAC+AGG | + | chr8_1:84863456-84863475 | Msa1221310:CDS | 45.0% | |
AAGCTGTTGTGATAGCCATG+AGG | - | chr8_1:84863558-84863577 | None:intergenic | 45.0% | |
TCACAACAGCTTGACTCAAC+AGG | + | chr8_1:84863566-84863585 | Msa1221310:CDS | 45.0% | |
AGTGAGTGCATTCAACTGGA+AGG | - | chr8_1:84863670-84863689 | None:intergenic | 45.0% | |
GGCTAAAGACATTGGTGTGA+AGG | - | chr8_1:84863063-84863082 | None:intergenic | 45.0% | |
CACACCAATGTCTTTAGCCA+AGG | + | chr8_1:84863064-84863083 | Msa1221310:CDS | 45.0% | |
AGAAGCGGTAAATGGAGCTT+TGG | - | chr8_1:84863453-84863472 | None:intergenic | 45.0% | |
CTCCATTTACCGCTTCTTAC+AGG | + | chr8_1:84863456-84863475 | Msa1221310:CDS | 45.0% | |
AAGCTGTTGTGATAGCCATG+AGG | - | chr8_1:84863558-84863577 | None:intergenic | 45.0% | |
TCACAACAGCTTGACTCAAC+AGG | + | chr8_1:84863566-84863585 | Msa1221310:CDS | 45.0% | |
AGTGAGTGCATTCAACTGGA+AGG | - | chr8_1:84863670-84863689 | None:intergenic | 45.0% | |
CTGTCTCTTGACAAAGCCTC+TGG | + | chr8_1:84862762-84862781 | Msa1221310:CDS | 50.0% | |
GCTCTCTGTTACCTTTCCCT+TGG | - | chr8_1:84863084-84863103 | None:intergenic | 50.0% | |
CTGCAGTTGGGTCAAACCAA+AGG | - | chr8_1:84863117-84863136 | None:intergenic | 50.0% | |
GCTGATGATTGGGCTACAAG+AGG | + | chr8_1:84863404-84863423 | Msa1221310:CDS | 50.0% | |
GATGATTGGGCTACAAGAGG+TGG | + | chr8_1:84863407-84863426 | Msa1221310:CDS | 50.0% | |
CAAAAGCCTCTGCTTCCTCA+TGG | + | chr8_1:84863540-84863559 | Msa1221310:CDS | 50.0% | |
TGATAGCCATGAGGAAGCAG+AGG | - | chr8_1:84863549-84863568 | None:intergenic | 50.0% | |
TTGACTCAACAGGTCTGCAG+AGG | + | chr8_1:84863576-84863595 | Msa1221310:CDS | 50.0% | |
CATTCAACTGGAAGGCCTTG+TGG | - | chr8_1:84863662-84863681 | None:intergenic | 50.0% | |
CTGTCTCTTGACAAAGCCTC+TGG | + | chr8_1:84862762-84862781 | Msa1221310:CDS | 50.0% | |
GCTCTCTGTTACCTTTCCCT+TGG | - | chr8_1:84863084-84863103 | None:intergenic | 50.0% | |
CTGCAGTTGGGTCAAACCAA+AGG | - | chr8_1:84863117-84863136 | None:intergenic | 50.0% | |
GCTGATGATTGGGCTACAAG+AGG | + | chr8_1:84863404-84863423 | Msa1221310:CDS | 50.0% | |
GATGATTGGGCTACAAGAGG+TGG | + | chr8_1:84863407-84863426 | Msa1221310:CDS | 50.0% | |
CAAAAGCCTCTGCTTCCTCA+TGG | + | chr8_1:84863540-84863559 | Msa1221310:CDS | 50.0% | |
TGATAGCCATGAGGAAGCAG+AGG | - | chr8_1:84863549-84863568 | None:intergenic | 50.0% | |
TTGACTCAACAGGTCTGCAG+AGG | + | chr8_1:84863576-84863595 | Msa1221310:CDS | 50.0% | |
CATTCAACTGGAAGGCCTTG+TGG | - | chr8_1:84863662-84863681 | None:intergenic | 50.0% | |
! | CTTGACAAAGCCTCTGGCTC+TGG | + | chr8_1:84862768-84862787 | Msa1221310:CDS | 55.0% |
GGATTGAAAGCCAGAGCCAG+AGG | - | chr8_1:84862781-84862800 | None:intergenic | 55.0% | |
CTTGTTCCAGGCAACTCTGC+TGG | + | chr8_1:84862843-84862862 | Msa1221310:CDS | 55.0% | |
! | CTTGACAAAGCCTCTGGCTC+TGG | + | chr8_1:84862768-84862787 | Msa1221310:CDS | 55.0% |
GGATTGAAAGCCAGAGCCAG+AGG | - | chr8_1:84862781-84862800 | None:intergenic | 55.0% | |
CTTGTTCCAGGCAACTCTGC+TGG | + | chr8_1:84862843-84862862 | Msa1221310:CDS | 55.0% | |
ACAGTGCCAGCAGAGTTGCC+TGG | - | chr8_1:84862852-84862871 | None:intergenic | 60.0% | |
CAACAGGTCTGCAGAGGCTG+AGG | + | chr8_1:84863582-84863601 | Msa1221310:CDS | 60.0% | |
AGGTCTGCAGAGGCTGAGGT+GGG | + | chr8_1:84863586-84863605 | Msa1221310:CDS | 60.0% | |
ACAGTGCCAGCAGAGTTGCC+TGG | - | chr8_1:84862852-84862871 | None:intergenic | 60.0% | |
CAACAGGTCTGCAGAGGCTG+AGG | + | chr8_1:84863582-84863601 | Msa1221310:CDS | 60.0% | |
AGGTCTGCAGAGGCTGAGGT+GGG | + | chr8_1:84863586-84863605 | Msa1221310:CDS | 60.0% | |
CAGGTCTGCAGAGGCTGAGG+TGG | + | chr8_1:84863585-84863604 | Msa1221310:CDS | 65.0% | |
CAGGTCTGCAGAGGCTGAGG+TGG | + | chr8_1:84863585-84863604 | Msa1221310:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 84862612 | 84863728 | 84862612 | ID=Msa1221310;Name=Msa1221310 |
chr8_1 | mRNA | 84862612 | 84863728 | 84862612 | ID=Msa1221310-mRNA-1;Parent=Msa1221310;Name=Msa1221310-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|1|0.66|1|1|1|3|37|286 |
chr8_1 | exon | 84862612 | 84862884 | 84862612 | ID=Msa1221310-mRNA-1:exon:30474;Parent=Msa1221310-mRNA-1 |
chr8_1 | exon | 84862986 | 84863179 | 84862986 | ID=Msa1221310-mRNA-1:exon:30475;Parent=Msa1221310-mRNA-1 |
chr8_1 | exon | 84863298 | 84863728 | 84863298 | ID=Msa1221310-mRNA-1:exon:30476;Parent=Msa1221310-mRNA-1 |
chr8_1 | CDS | 84862612 | 84862884 | 84862612 | ID=Msa1221310-mRNA-1:cds;Parent=Msa1221310-mRNA-1 |
chr8_1 | CDS | 84862986 | 84863179 | 84862986 | ID=Msa1221310-mRNA-1:cds;Parent=Msa1221310-mRNA-1 |
chr8_1 | CDS | 84863298 | 84863691 | 84863298 | ID=Msa1221310-mRNA-1:cds;Parent=Msa1221310-mRNA-1 |
chr8_1 | three_prime_UTR | 84863692 | 84863728 | 84863692 | ID=Msa1221310-mRNA-1:three_prime_utr;Parent=Msa1221310-mRNA-1 |
Gene Sequence |
Protein sequence |