AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221310 MtrunA17_Chr4g0072671 96.528 288 7 2 1 286 1 287 0.0 568
Msa1221310 MtrunA17_Chr4g0072611 82.500 280 43 3 5 284 7 280 5.37e-172 476
Msa1221310 MtrunA17_Chr7g0258911 82.624 282 43 3 3 284 4 279 1.99e-168 468
Msa1221310 MtrunA17_Chr4g0071341 77.736 265 58 1 21 285 19 282 4.69e-152 426
Msa1221310 MtrunA17_Chr4g0072601 72.982 285 74 3 1 284 1 283 3.67e-150 421
Msa1221310 MtrunA17_Chr2g0299061 70.213 282 76 3 7 284 9 286 3.59e-145 409
Msa1221310 MtrunA17_Chr8g0377841 69.310 290 78 2 1 286 1 283 1.65e-144 407
Msa1221310 MtrunA17_Chr3g0122021 70.175 285 76 2 1 284 1 277 4.03e-143 403
Msa1221310 MtrunA17_Chr3g0122031 70.175 285 76 2 1 284 1 277 5.35e-143 403
Msa1221310 MtrunA17_Chr4g0072681 73.984 246 56 3 48 286 1 245 2.58e-132 375
Msa1221310 MtrunA17_Chr8g0389641 60.490 286 67 3 1 284 1 242 1.03e-120 345
Msa1221310 MtrunA17_Chr6g0486581 52.962 287 128 5 1 284 1 283 2.52e-104 305
Msa1221310 MtrunA17_Chr5g0443391 52.982 285 126 3 1 284 1 278 1.07e-102 301
Msa1221310 MtrunA17_Chr6g0461761 56.538 260 111 2 27 286 32 289 3.14e-101 298
Msa1221310 MtrunA17_Chr7g0252631 52.414 290 129 4 1 284 1 287 1.84e-100 296
Msa1221310 MtrunA17_Chr6g0461731 55.985 259 112 2 27 285 55 311 2.56e-100 296
Msa1221310 MtrunA17_Chr7g0252621 52.414 290 129 4 1 284 1 287 4.26e-100 295
Msa1221310 MtrunA17_Chr3g0096651 53.053 262 116 3 24 284 27 282 4.74e-99 292
Msa1221310 MtrunA17_Chr7g0252601 54.580 262 109 3 27 284 32 287 1.07e-98 291
Msa1221310 MtrunA17_Chr4g0054431 49.821 279 134 4 9 284 12 287 1.69e-97 288
Msa1221310 MtrunA17_Chr4g0054451 49.291 282 133 5 9 284 12 289 4.43e-97 287
Msa1221310 MtrunA17_Chr2g0323161 47.782 293 139 6 1 285 1 287 6.59e-95 281
Msa1221310 MtrunA17_Chr4g0023961 46.939 294 144 5 1 286 1 290 8.17e-94 279
Msa1221310 MtrunA17_Chr1g0206681 49.254 268 128 3 22 285 29 292 8.05e-93 276
Msa1221310 MtrunA17_Chr1g0206081 45.238 294 145 6 3 285 7 295 8.16e-86 259
Msa1221310 MtrunA17_Chr8g0390201 56.633 196 81 2 92 284 15 209 1.74e-78 237
Msa1221310 MtrunA17_Chr8g0340001 46.218 238 107 5 58 286 8 233 9.04e-68 210
Msa1221310 MtrunA17_Chr4g0072641 72.868 129 19 1 157 285 37 149 7.06e-63 195
Msa1221310 MtrunA17_Chr4g0028221 42.322 267 135 9 26 284 49 304 1.16e-61 197
Msa1221310 MtrunA17_Chr7g0264731 41.418 268 138 7 26 285 36 292 2.18e-61 196
Msa1221310 MtrunA17_Chr2g0327411 40.149 269 139 8 26 284 53 309 3.37e-59 191
Msa1221310 MtrunA17_Chr2g0303861 38.754 289 164 7 1 286 3 281 5.38e-59 189
Msa1221310 MtrunA17_Chr1g0180451 37.671 292 162 8 1 284 15 294 2.91e-58 188
Msa1221310 MtrunA17_Chr2g0303721 38.163 283 151 8 7 282 10 275 4.63e-55 179
Msa1221310 MtrunA17_Chr8g0375981 37.828 267 152 7 27 285 31 291 4.87e-55 181
Msa1221310 MtrunA17_Chr1g0161951 36.934 287 166 8 7 285 13 292 6.88e-55 180
Msa1221310 MtrunA17_Chr7g0235541 45.872 218 100 7 74 284 1 207 6.03e-54 174
Msa1221310 MtrunA17_Chr8g0365231 36.431 269 148 7 31 284 50 310 3.47e-51 170
Msa1221310 MtrunA17_Chr5g0410621 35.448 268 159 8 27 284 42 305 1.90e-48 164
Msa1221310 MtrunA17_Chr8g0382041 34.909 275 150 11 27 285 34 295 1.13e-42 149
Msa1221310 MtrunA17_Chr4g0072631 62.651 83 29 1 5 87 11 91 6.19e-25 95.9
Msa1221310 MtrunA17_Chr8g0374231 45.370 108 48 6 183 285 1 102 2.96e-22 89.0
Msa1221310 MtrunA17_Chr8g0390181 48.864 88 43 1 7 94 8 93 2.71e-19 80.9
Msa1221310 MtrunA17_Chr8g0350711 33.333 177 110 4 46 220 51 221 4.72e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221310 AT4G25810.1 75.789 285 64 3 1 284 3 283 1.37e-160 448
Msa1221310 AT5G57560.1 72.887 284 71 3 3 284 2 281 4.07e-156 437
Msa1221310 AT5G57550.1 67.820 289 85 3 1 286 1 284 1.41e-147 415
Msa1221310 AT4G30270.1 68.592 277 71 2 9 285 6 266 3.24e-143 404
Msa1221310 AT5G48070.1 65.343 277 89 3 10 285 12 282 1.70e-139 394
Msa1221310 AT2G18800.1 63.636 297 96 4 1 285 1 297 5.24e-139 394
Msa1221310 AT3G23730.1 66.071 280 90 3 9 284 8 286 2.03e-137 390
Msa1221310 AT4G14130.1 64.912 285 98 2 1 284 1 284 9.20e-136 385
Msa1221310 AT5G57530.1 66.791 268 79 2 21 284 21 282 2.21e-132 377
Msa1221310 AT4G30280.1 62.587 286 100 3 1 285 3 282 1.35e-129 369
Msa1221310 AT5G57540.1 65.779 263 84 2 24 284 23 281 2.85e-129 369
Msa1221310 AT4G30290.1 63.345 281 94 4 6 285 5 277 1.15e-127 364
Msa1221310 AT1G65310.2 65.299 268 86 3 19 285 43 304 8.10e-127 363
Msa1221310 AT1G65310.1 65.299 268 86 3 19 285 21 282 1.20e-126 362
Msa1221310 AT4G25820.1 65.918 267 85 2 20 284 23 285 1.55e-126 362
Msa1221310 AT5G13870.2 52.448 286 132 3 1 284 4 287 4.37e-99 292
Msa1221310 AT5G13870.1 52.448 286 132 3 1 284 4 287 4.37e-99 292
Msa1221310 AT5G13870.3 52.448 286 132 3 1 284 4 287 4.37e-99 292
Msa1221310 AT5G65730.1 46.454 282 147 3 4 284 12 290 7.31e-95 282
Msa1221310 AT4G28850.1 47.887 284 141 3 6 285 8 288 6.76e-94 279
Msa1221310 AT2G06850.1 53.488 258 118 2 27 284 35 290 1.22e-93 279
Msa1221310 AT4G37800.1 48.399 281 140 4 6 285 14 290 5.78e-93 277
Msa1221310 AT4G03210.1 49.110 281 136 5 9 286 10 286 1.38e-92 276
Msa1221310 AT2G14620.1 48.188 276 136 5 14 285 23 295 3.66e-89 268
Msa1221310 AT2G06850.2 56.140 228 98 2 57 284 5 230 2.60e-88 263
Msa1221310 AT4G03210.2 53.200 250 108 5 39 286 16 258 7.46e-88 263
Msa1221310 AT1G11545.1 46.622 296 139 8 2 285 12 300 5.88e-87 262
Msa1221310 AT4G13090.1 45.583 283 144 6 8 284 10 288 6.77e-79 241
Msa1221310 AT2G14620.2 50.649 231 108 4 58 285 18 245 3.18e-78 238
Msa1221310 AT4G13080.1 45.070 284 147 6 5 284 13 291 1.93e-76 235
Msa1221310 AT2G14620.3 51.351 222 102 4 67 285 16 234 1.97e-76 233
Msa1221310 AT3G25050.1 45.211 261 134 6 27 284 35 289 1.18e-74 230
Msa1221310 AT2G36870.1 42.322 267 135 6 26 284 42 297 1.67e-62 199
Msa1221310 AT3G44990.1 42.105 266 135 7 27 284 39 293 2.23e-61 196
Msa1221310 AT1G10550.1 36.015 261 150 6 38 284 52 309 3.96e-52 173
Msa1221310 AT1G32170.1 33.775 302 175 10 1 285 1 294 2.80e-50 169
Msa1221310 AT1G14720.1 35.955 267 159 7 26 285 30 291 8.91e-50 167
Msa1221310 AT2G01850.1 31.987 297 184 8 1 285 1 291 5.05e-48 163
Msa1221310 AT3G48580.1 36.653 251 141 7 34 284 41 273 1.45e-44 152
Msa1221310 AT4G18990.1 33.438 317 160 12 12 285 5 313 2.70e-44 154
Msa1221310 AT3G48580.3 35.526 228 130 6 57 284 4 214 1.00e-38 135
Msa1221310 AT4G18990.2 34.722 216 113 8 92 285 30 239 4.51e-35 128
Msa1221310 AT2G36870.2 46.043 139 65 3 26 156 42 178 3.38e-32 117
Msa1221310 AT3G48580.2 31.474 251 134 8 34 284 41 253 1.01e-27 108

Find 64 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGCGTTGTTGAGTATTT+TGG 0.226569 8_1:-84862730 None:intergenic
CTGTAGATGGAACTCCAATT+AGG 0.235182 8_1:+84863303 Msa1221310:CDS
CTCCATTTACCGCTTCTTAC+AGG 0.238448 8_1:+84863456 Msa1221310:CDS
ATGTTCTTGAATTCCCTAAT+TGG 0.259290 8_1:-84863317 None:intergenic
TGAGAATCTATTCTAGTCTT+TGG 0.265403 8_1:+84863378 Msa1221310:CDS
TGCTTCTTATTCCTCTGCTT+TGG 0.286665 8_1:+84862637 Msa1221310:CDS
GAGATAGACTTTGAATTCTT+AGG 0.299139 8_1:+84863013 Msa1221310:CDS
TTCCTGTAAGAAGCGGTAAA+TGG 0.328030 8_1:-84863458 None:intergenic
GTCTTTGGAATGCTGATGAT+TGG 0.342081 8_1:+84863393 Msa1221310:CDS
TGTAGATGGAACTCCAATTA+GGG 0.398243 8_1:+84863304 Msa1221310:CDS
CTTGACAAAGCCTCTGGCTC+TGG 0.398860 8_1:+84862768 Msa1221310:CDS
GTTCCATGTACAAGCATTGT+TGG 0.399945 8_1:-84863489 None:intergenic
ATCTAGTGAGTGCATTCAAC+TGG 0.406472 8_1:-84863671 None:intergenic
ATGCAGATTAAGCTTGTTCC+AGG 0.407701 8_1:+84862831 Msa1221310:CDS
GCTCTCTGTTACCTTTCCCT+TGG 0.417997 8_1:-84863081 None:intergenic
AGACTAGAATAGATTCTCAT+TGG 0.441045 8_1:-84863374 None:intergenic
AGAAGCGGTAAATGGAGCTT+TGG 0.460589 8_1:-84863450 None:intergenic
TCACAACAGCTTGACTCAAC+AGG 0.461793 8_1:+84863566 Msa1221310:CDS
AGATCTTAGTCATATACTAT+AGG 0.464222 8_1:+84863690 Msa1221310:exon
TAGAATAGATTCTCATTGGT+TGG 0.468992 8_1:-84863370 None:intergenic
TCTTTGGAATGCTGATGATT+GGG 0.473720 8_1:+84863394 Msa1221310:CDS
CTTGTTCCAGGCAACTCTGC+TGG 0.477831 8_1:+84862843 Msa1221310:CDS
CTGTCTCTTGACAAAGCCTC+TGG 0.485728 8_1:+84862762 Msa1221310:CDS
CCCATGTAATCTGAAAATCT+TGG 0.491907 8_1:-84862695 None:intergenic
ACATTGGTGTGAAGGATGTA+AGG 0.496890 8_1:-84863052 None:intergenic
CAGGTCTGCAGAGGCTGAGG+TGG 0.507933 8_1:+84863585 Msa1221310:CDS
GTGGACTTGTTAAGACAGAT+TGG 0.508499 8_1:+84863426 Msa1221310:CDS
CAACAGGTCTGCAGAGGCTG+AGG 0.508970 8_1:+84863582 Msa1221310:CDS
CACACCAATGTCTTTAGCCA+AGG 0.515110 8_1:+84863064 Msa1221310:CDS
TTTCAGATTACATGGGGAGA+TGG 0.522270 8_1:+84862702 Msa1221310:CDS
ACAGTGCCAGCAGAGTTGCC+TGG 0.527429 8_1:-84862849 None:intergenic
AAGAGACAGAGTAAGAAGAT+TGG 0.527904 8_1:-84862748 None:intergenic
TCACTTCAGCTATCATCAAA+AGG 0.530973 8_1:+84862977 Msa1221310:intron
ATGCCAACAATGCTTGTACA+TGG 0.537452 8_1:+84863486 Msa1221310:CDS
TTCACACATACTCAATTCTG+TGG 0.546538 8_1:+84863140 Msa1221310:CDS
CATTCAACTGGAAGGCCTTG+TGG 0.552461 8_1:-84863659 None:intergenic
TTTCCCTTGGCTAAAGACAT+TGG 0.555935 8_1:-84863068 None:intergenic
CAAAAGCCTCTGCTTCCTCA+TGG 0.559152 8_1:+84863540 Msa1221310:CDS
ATCATCAAAAGGAGGTGCAT+GGG 0.570048 8_1:+84862988 Msa1221310:CDS
AATAATGTAGCATGTGCTGC+TGG 0.571781 8_1:+84862663 Msa1221310:CDS
TATCATCAAAAGGAGGTGCA+TGG 0.582020 8_1:+84862987 Msa1221310:CDS
CTGCAGTTGGGTCAAACCAA+AGG 0.586715 8_1:-84863114 None:intergenic
AATTAGGGAATTCAAGAACA+TGG 0.587989 8_1:+84863319 Msa1221310:CDS
AGGTCTGCAGAGGCTGAGGT+GGG 0.596207 8_1:+84863586 Msa1221310:CDS
GATGATTGGGCTACAAGAGG+TGG 0.596350 8_1:+84863407 Msa1221310:CDS
GGCTAAAGACATTGGTGTGA+AGG 0.601842 8_1:-84863060 None:intergenic
ACACCAATGTCTTTAGCCAA+GGG 0.604485 8_1:+84863065 Msa1221310:CDS
GGATTGAAAGCCAGAGCCAG+AGG 0.605791 8_1:-84862778 None:intergenic
ATGTGTGAAAATCTGCAGTT+GGG 0.606525 8_1:-84863126 None:intergenic
AATGCTTGTACATGGAACAA+TGG 0.607069 8_1:+84863494 Msa1221310:CDS
AGTACTTACACAATACGTTG+TGG 0.616337 8_1:-84863166 None:intergenic
TATGTGTGAAAATCTGCAGT+TGG 0.616665 8_1:-84863127 None:intergenic
TTGACTCAACAGGTCTGCAG+AGG 0.621733 8_1:+84863576 Msa1221310:CDS
TTCAAGAACATGGAATCAAG+TGG 0.625602 8_1:+84863329 Msa1221310:CDS
AATGTCTTTAGCCAAGGGAA+AGG 0.633429 8_1:+84863070 Msa1221310:CDS
TGATAGCCATGAGGAAGCAG+AGG 0.634325 8_1:-84863546 None:intergenic
AGTGAGTGCATTCAACTGGA+AGG 0.634779 8_1:-84863667 None:intergenic
ATTGAAATTCCTGTAAGAAG+CGG 0.652103 8_1:-84863465 None:intergenic
GAATTCTTAGGAAATTTGAG+TGG 0.658307 8_1:+84863025 Msa1221310:CDS
CTTCAGCTATCATCAAAAGG+AGG 0.677139 8_1:+84862980 Msa1221310:intron
GCTGATGATTGGGCTACAAG+AGG 0.684485 8_1:+84863404 Msa1221310:CDS
ACATTATTAATCCAAAGCAG+AGG 0.697684 8_1:-84862648 None:intergenic
AAGCTGTTGTGATAGCCATG+AGG 0.744355 8_1:-84863555 None:intergenic
GATAAGAAGAGATTTCCACA+AGG 0.790444 8_1:+84863644 Msa1221310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCCAAAAATGAATACTTATT+TGG + chr8_1:84862798-84862817 Msa1221310:CDS 20.0%
!! AAAAAAAACATTACTTGTGT+TGG + chr8_1:84863235-84863254 Msa1221310:intron 20.0%
!! TCCAAAAATGAATACTTATT+TGG + chr8_1:84862798-84862817 Msa1221310:CDS 20.0%
!! AAAAAAAACATTACTTGTGT+TGG + chr8_1:84863235-84863254 Msa1221310:intron 20.0%
!! GCCAAATAAGTATTCATTTT+TGG - chr8_1:84862802-84862821 None:intergenic 25.0%
! AGATCTTAGTCATATACTAT+AGG + chr8_1:84863690-84863709 Msa1221310:exon 25.0%
!! GCCAAATAAGTATTCATTTT+TGG - chr8_1:84862802-84862821 None:intergenic 25.0%
! AGATCTTAGTCATATACTAT+AGG + chr8_1:84863690-84863709 Msa1221310:exon 25.0%
ACATTATTAATCCAAAGCAG+AGG - chr8_1:84862651-84862670 None:intergenic 30.0%
! ACCAAGATTTTCAGATTACA+TGG + chr8_1:84862694-84862713 Msa1221310:CDS 30.0%
! CCAAGATTTTCAGATTACAT+GGG + chr8_1:84862695-84862714 Msa1221310:CDS 30.0%
! CAAGATTTTCAGATTACATG+GGG + chr8_1:84862696-84862715 Msa1221310:CDS 30.0%
GAGATAGACTTTGAATTCTT+AGG + chr8_1:84863013-84863032 Msa1221310:CDS 30.0%
GAATTCTTAGGAAATTTGAG+TGG + chr8_1:84863025-84863044 Msa1221310:CDS 30.0%
!! TTTTTCAGTTTCTCTGTAGA+TGG + chr8_1:84863290-84863309 Msa1221310:intron 30.0%
ATGTTCTTGAATTCCCTAAT+TGG - chr8_1:84863320-84863339 None:intergenic 30.0%
AATTAGGGAATTCAAGAACA+TGG + chr8_1:84863319-84863338 Msa1221310:CDS 30.0%
!!! ATTCTCATTGGTTGGTTTTT+GGG - chr8_1:84863365-84863384 None:intergenic 30.0%
TAGAATAGATTCTCATTGGT+TGG - chr8_1:84863373-84863392 None:intergenic 30.0%
AGACTAGAATAGATTCTCAT+TGG - chr8_1:84863377-84863396 None:intergenic 30.0%
! TGAGAATCTATTCTAGTCTT+TGG + chr8_1:84863378-84863397 Msa1221310:CDS 30.0%
ATTGAAATTCCTGTAAGAAG+CGG - chr8_1:84863468-84863487 None:intergenic 30.0%
ACATTATTAATCCAAAGCAG+AGG - chr8_1:84862651-84862670 None:intergenic 30.0%
! ACCAAGATTTTCAGATTACA+TGG + chr8_1:84862694-84862713 Msa1221310:CDS 30.0%
! CCAAGATTTTCAGATTACAT+GGG + chr8_1:84862695-84862714 Msa1221310:CDS 30.0%
! CAAGATTTTCAGATTACATG+GGG + chr8_1:84862696-84862715 Msa1221310:CDS 30.0%
GAGATAGACTTTGAATTCTT+AGG + chr8_1:84863013-84863032 Msa1221310:CDS 30.0%
GAATTCTTAGGAAATTTGAG+TGG + chr8_1:84863025-84863044 Msa1221310:CDS 30.0%
!! TTTTTCAGTTTCTCTGTAGA+TGG + chr8_1:84863290-84863309 Msa1221310:intron 30.0%
ATGTTCTTGAATTCCCTAAT+TGG - chr8_1:84863320-84863339 None:intergenic 30.0%
AATTAGGGAATTCAAGAACA+TGG + chr8_1:84863319-84863338 Msa1221310:CDS 30.0%
!!! ATTCTCATTGGTTGGTTTTT+GGG - chr8_1:84863365-84863384 None:intergenic 30.0%
TAGAATAGATTCTCATTGGT+TGG - chr8_1:84863373-84863392 None:intergenic 30.0%
AGACTAGAATAGATTCTCAT+TGG - chr8_1:84863377-84863396 None:intergenic 30.0%
! TGAGAATCTATTCTAGTCTT+TGG + chr8_1:84863378-84863397 Msa1221310:CDS 30.0%
ATTGAAATTCCTGTAAGAAG+CGG - chr8_1:84863468-84863487 None:intergenic 30.0%
CCCATGTAATCTGAAAATCT+TGG - chr8_1:84862698-84862717 None:intergenic 35.0%
! ATTGGCGTTGTTGAGTATTT+TGG - chr8_1:84862733-84862752 None:intergenic 35.0%
AAGAGACAGAGTAAGAAGAT+TGG - chr8_1:84862751-84862770 None:intergenic 35.0%
TCACTTCAGCTATCATCAAA+AGG + chr8_1:84862977-84862996 Msa1221310:intron 35.0%
! GAGAGCAACAATTTTACCTT+TGG + chr8_1:84863098-84863117 Msa1221310:CDS 35.0%
ATGTGTGAAAATCTGCAGTT+GGG - chr8_1:84863129-84863148 None:intergenic 35.0%
TATGTGTGAAAATCTGCAGT+TGG - chr8_1:84863130-84863149 None:intergenic 35.0%
TTCACACATACTCAATTCTG+TGG + chr8_1:84863140-84863159 Msa1221310:CDS 35.0%
AGTACTTACACAATACGTTG+TGG - chr8_1:84863169-84863188 None:intergenic 35.0%
TGTAGATGGAACTCCAATTA+GGG + chr8_1:84863304-84863323 Msa1221310:CDS 35.0%
TTCAAGAACATGGAATCAAG+TGG + chr8_1:84863329-84863348 Msa1221310:CDS 35.0%
!!! TTCTCATTGGTTGGTTTTTG+GGG - chr8_1:84863364-84863383 None:intergenic 35.0%
!!! GATTCTCATTGGTTGGTTTT+TGG - chr8_1:84863366-84863385 None:intergenic 35.0%
!! TCTTTGGAATGCTGATGATT+GGG + chr8_1:84863394-84863413 Msa1221310:CDS 35.0%
AATGCTTGTACATGGAACAA+TGG + chr8_1:84863494-84863513 Msa1221310:CDS 35.0%
GATAAGAAGAGATTTCCACA+AGG + chr8_1:84863644-84863663 Msa1221310:CDS 35.0%
CCCATGTAATCTGAAAATCT+TGG - chr8_1:84862698-84862717 None:intergenic 35.0%
! ATTGGCGTTGTTGAGTATTT+TGG - chr8_1:84862733-84862752 None:intergenic 35.0%
AAGAGACAGAGTAAGAAGAT+TGG - chr8_1:84862751-84862770 None:intergenic 35.0%
TCACTTCAGCTATCATCAAA+AGG + chr8_1:84862977-84862996 Msa1221310:intron 35.0%
! GAGAGCAACAATTTTACCTT+TGG + chr8_1:84863098-84863117 Msa1221310:CDS 35.0%
ATGTGTGAAAATCTGCAGTT+GGG - chr8_1:84863129-84863148 None:intergenic 35.0%
TATGTGTGAAAATCTGCAGT+TGG - chr8_1:84863130-84863149 None:intergenic 35.0%
TTCACACATACTCAATTCTG+TGG + chr8_1:84863140-84863159 Msa1221310:CDS 35.0%
AGTACTTACACAATACGTTG+TGG - chr8_1:84863169-84863188 None:intergenic 35.0%
TGTAGATGGAACTCCAATTA+GGG + chr8_1:84863304-84863323 Msa1221310:CDS 35.0%
TTCAAGAACATGGAATCAAG+TGG + chr8_1:84863329-84863348 Msa1221310:CDS 35.0%
!!! TTCTCATTGGTTGGTTTTTG+GGG - chr8_1:84863364-84863383 None:intergenic 35.0%
!!! GATTCTCATTGGTTGGTTTT+TGG - chr8_1:84863366-84863385 None:intergenic 35.0%
!! TCTTTGGAATGCTGATGATT+GGG + chr8_1:84863394-84863413 Msa1221310:CDS 35.0%
AATGCTTGTACATGGAACAA+TGG + chr8_1:84863494-84863513 Msa1221310:CDS 35.0%
GATAAGAAGAGATTTCCACA+AGG + chr8_1:84863644-84863663 Msa1221310:CDS 35.0%
TGCTTCTTATTCCTCTGCTT+TGG + chr8_1:84862637-84862656 Msa1221310:CDS 40.0%
AATAATGTAGCATGTGCTGC+TGG + chr8_1:84862663-84862682 Msa1221310:CDS 40.0%
TTTCAGATTACATGGGGAGA+TGG + chr8_1:84862702-84862721 Msa1221310:CDS 40.0%
! ATGCAGATTAAGCTTGTTCC+AGG + chr8_1:84862831-84862850 Msa1221310:CDS 40.0%
CTTCAGCTATCATCAAAAGG+AGG + chr8_1:84862980-84862999 Msa1221310:intron 40.0%
! TATCATCAAAAGGAGGTGCA+TGG + chr8_1:84862987-84863006 Msa1221310:CDS 40.0%
! ATCATCAAAAGGAGGTGCAT+GGG + chr8_1:84862988-84863007 Msa1221310:CDS 40.0%
ACATTGGTGTGAAGGATGTA+AGG - chr8_1:84863055-84863074 None:intergenic 40.0%
ACACCAATGTCTTTAGCCAA+GGG + chr8_1:84863065-84863084 Msa1221310:CDS 40.0%
TTTCCCTTGGCTAAAGACAT+TGG - chr8_1:84863071-84863090 None:intergenic 40.0%
AATGTCTTTAGCCAAGGGAA+AGG + chr8_1:84863070-84863089 Msa1221310:CDS 40.0%
CTGTAGATGGAACTCCAATT+AGG + chr8_1:84863303-84863322 Msa1221310:CDS 40.0%
!!! ATTGGTTGGTTTTTGGGGAA+TGG - chr8_1:84863359-84863378 None:intergenic 40.0%
!! GTCTTTGGAATGCTGATGAT+TGG + chr8_1:84863393-84863412 Msa1221310:CDS 40.0%
!! GTGGACTTGTTAAGACAGAT+TGG + chr8_1:84863426-84863445 Msa1221310:CDS 40.0%
TTCCTGTAAGAAGCGGTAAA+TGG - chr8_1:84863461-84863480 None:intergenic 40.0%
ATGCCAACAATGCTTGTACA+TGG + chr8_1:84863486-84863505 Msa1221310:CDS 40.0%
! GTTCCATGTACAAGCATTGT+TGG - chr8_1:84863492-84863511 None:intergenic 40.0%
ATCTAGTGAGTGCATTCAAC+TGG - chr8_1:84863674-84863693 None:intergenic 40.0%
TGCTTCTTATTCCTCTGCTT+TGG + chr8_1:84862637-84862656 Msa1221310:CDS 40.0%
AATAATGTAGCATGTGCTGC+TGG + chr8_1:84862663-84862682 Msa1221310:CDS 40.0%
TTTCAGATTACATGGGGAGA+TGG + chr8_1:84862702-84862721 Msa1221310:CDS 40.0%
! ATGCAGATTAAGCTTGTTCC+AGG + chr8_1:84862831-84862850 Msa1221310:CDS 40.0%
CTTCAGCTATCATCAAAAGG+AGG + chr8_1:84862980-84862999 Msa1221310:intron 40.0%
! TATCATCAAAAGGAGGTGCA+TGG + chr8_1:84862987-84863006 Msa1221310:CDS 40.0%
! ATCATCAAAAGGAGGTGCAT+GGG + chr8_1:84862988-84863007 Msa1221310:CDS 40.0%
ACATTGGTGTGAAGGATGTA+AGG - chr8_1:84863055-84863074 None:intergenic 40.0%
ACACCAATGTCTTTAGCCAA+GGG + chr8_1:84863065-84863084 Msa1221310:CDS 40.0%
TTTCCCTTGGCTAAAGACAT+TGG - chr8_1:84863071-84863090 None:intergenic 40.0%
AATGTCTTTAGCCAAGGGAA+AGG + chr8_1:84863070-84863089 Msa1221310:CDS 40.0%
CTGTAGATGGAACTCCAATT+AGG + chr8_1:84863303-84863322 Msa1221310:CDS 40.0%
!!! ATTGGTTGGTTTTTGGGGAA+TGG - chr8_1:84863359-84863378 None:intergenic 40.0%
!! GTCTTTGGAATGCTGATGAT+TGG + chr8_1:84863393-84863412 Msa1221310:CDS 40.0%
!! GTGGACTTGTTAAGACAGAT+TGG + chr8_1:84863426-84863445 Msa1221310:CDS 40.0%
TTCCTGTAAGAAGCGGTAAA+TGG - chr8_1:84863461-84863480 None:intergenic 40.0%
ATGCCAACAATGCTTGTACA+TGG + chr8_1:84863486-84863505 Msa1221310:CDS 40.0%
! GTTCCATGTACAAGCATTGT+TGG - chr8_1:84863492-84863511 None:intergenic 40.0%
ATCTAGTGAGTGCATTCAAC+TGG - chr8_1:84863674-84863693 None:intergenic 40.0%
GGCTAAAGACATTGGTGTGA+AGG - chr8_1:84863063-84863082 None:intergenic 45.0%
CACACCAATGTCTTTAGCCA+AGG + chr8_1:84863064-84863083 Msa1221310:CDS 45.0%
AGAAGCGGTAAATGGAGCTT+TGG - chr8_1:84863453-84863472 None:intergenic 45.0%
CTCCATTTACCGCTTCTTAC+AGG + chr8_1:84863456-84863475 Msa1221310:CDS 45.0%
AAGCTGTTGTGATAGCCATG+AGG - chr8_1:84863558-84863577 None:intergenic 45.0%
TCACAACAGCTTGACTCAAC+AGG + chr8_1:84863566-84863585 Msa1221310:CDS 45.0%
AGTGAGTGCATTCAACTGGA+AGG - chr8_1:84863670-84863689 None:intergenic 45.0%
GGCTAAAGACATTGGTGTGA+AGG - chr8_1:84863063-84863082 None:intergenic 45.0%
CACACCAATGTCTTTAGCCA+AGG + chr8_1:84863064-84863083 Msa1221310:CDS 45.0%
AGAAGCGGTAAATGGAGCTT+TGG - chr8_1:84863453-84863472 None:intergenic 45.0%
CTCCATTTACCGCTTCTTAC+AGG + chr8_1:84863456-84863475 Msa1221310:CDS 45.0%
AAGCTGTTGTGATAGCCATG+AGG - chr8_1:84863558-84863577 None:intergenic 45.0%
TCACAACAGCTTGACTCAAC+AGG + chr8_1:84863566-84863585 Msa1221310:CDS 45.0%
AGTGAGTGCATTCAACTGGA+AGG - chr8_1:84863670-84863689 None:intergenic 45.0%
CTGTCTCTTGACAAAGCCTC+TGG + chr8_1:84862762-84862781 Msa1221310:CDS 50.0%
GCTCTCTGTTACCTTTCCCT+TGG - chr8_1:84863084-84863103 None:intergenic 50.0%
CTGCAGTTGGGTCAAACCAA+AGG - chr8_1:84863117-84863136 None:intergenic 50.0%
GCTGATGATTGGGCTACAAG+AGG + chr8_1:84863404-84863423 Msa1221310:CDS 50.0%
GATGATTGGGCTACAAGAGG+TGG + chr8_1:84863407-84863426 Msa1221310:CDS 50.0%
CAAAAGCCTCTGCTTCCTCA+TGG + chr8_1:84863540-84863559 Msa1221310:CDS 50.0%
TGATAGCCATGAGGAAGCAG+AGG - chr8_1:84863549-84863568 None:intergenic 50.0%
TTGACTCAACAGGTCTGCAG+AGG + chr8_1:84863576-84863595 Msa1221310:CDS 50.0%
CATTCAACTGGAAGGCCTTG+TGG - chr8_1:84863662-84863681 None:intergenic 50.0%
CTGTCTCTTGACAAAGCCTC+TGG + chr8_1:84862762-84862781 Msa1221310:CDS 50.0%
GCTCTCTGTTACCTTTCCCT+TGG - chr8_1:84863084-84863103 None:intergenic 50.0%
CTGCAGTTGGGTCAAACCAA+AGG - chr8_1:84863117-84863136 None:intergenic 50.0%
GCTGATGATTGGGCTACAAG+AGG + chr8_1:84863404-84863423 Msa1221310:CDS 50.0%
GATGATTGGGCTACAAGAGG+TGG + chr8_1:84863407-84863426 Msa1221310:CDS 50.0%
CAAAAGCCTCTGCTTCCTCA+TGG + chr8_1:84863540-84863559 Msa1221310:CDS 50.0%
TGATAGCCATGAGGAAGCAG+AGG - chr8_1:84863549-84863568 None:intergenic 50.0%
TTGACTCAACAGGTCTGCAG+AGG + chr8_1:84863576-84863595 Msa1221310:CDS 50.0%
CATTCAACTGGAAGGCCTTG+TGG - chr8_1:84863662-84863681 None:intergenic 50.0%
! CTTGACAAAGCCTCTGGCTC+TGG + chr8_1:84862768-84862787 Msa1221310:CDS 55.0%
GGATTGAAAGCCAGAGCCAG+AGG - chr8_1:84862781-84862800 None:intergenic 55.0%
CTTGTTCCAGGCAACTCTGC+TGG + chr8_1:84862843-84862862 Msa1221310:CDS 55.0%
! CTTGACAAAGCCTCTGGCTC+TGG + chr8_1:84862768-84862787 Msa1221310:CDS 55.0%
GGATTGAAAGCCAGAGCCAG+AGG - chr8_1:84862781-84862800 None:intergenic 55.0%
CTTGTTCCAGGCAACTCTGC+TGG + chr8_1:84862843-84862862 Msa1221310:CDS 55.0%
ACAGTGCCAGCAGAGTTGCC+TGG - chr8_1:84862852-84862871 None:intergenic 60.0%
CAACAGGTCTGCAGAGGCTG+AGG + chr8_1:84863582-84863601 Msa1221310:CDS 60.0%
AGGTCTGCAGAGGCTGAGGT+GGG + chr8_1:84863586-84863605 Msa1221310:CDS 60.0%
ACAGTGCCAGCAGAGTTGCC+TGG - chr8_1:84862852-84862871 None:intergenic 60.0%
CAACAGGTCTGCAGAGGCTG+AGG + chr8_1:84863582-84863601 Msa1221310:CDS 60.0%
AGGTCTGCAGAGGCTGAGGT+GGG + chr8_1:84863586-84863605 Msa1221310:CDS 60.0%
CAGGTCTGCAGAGGCTGAGG+TGG + chr8_1:84863585-84863604 Msa1221310:CDS 65.0%
CAGGTCTGCAGAGGCTGAGG+TGG + chr8_1:84863585-84863604 Msa1221310:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 84862612 84863728 84862612 ID=Msa1221310;Name=Msa1221310
chr8_1 mRNA 84862612 84863728 84862612 ID=Msa1221310-mRNA-1;Parent=Msa1221310;Name=Msa1221310-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|1|0.66|1|1|1|3|37|286
chr8_1 exon 84862612 84862884 84862612 ID=Msa1221310-mRNA-1:exon:30474;Parent=Msa1221310-mRNA-1
chr8_1 exon 84862986 84863179 84862986 ID=Msa1221310-mRNA-1:exon:30475;Parent=Msa1221310-mRNA-1
chr8_1 exon 84863298 84863728 84863298 ID=Msa1221310-mRNA-1:exon:30476;Parent=Msa1221310-mRNA-1
chr8_1 CDS 84862612 84862884 84862612 ID=Msa1221310-mRNA-1:cds;Parent=Msa1221310-mRNA-1
chr8_1 CDS 84862986 84863179 84862986 ID=Msa1221310-mRNA-1:cds;Parent=Msa1221310-mRNA-1
chr8_1 CDS 84863298 84863691 84863298 ID=Msa1221310-mRNA-1:cds;Parent=Msa1221310-mRNA-1
chr8_1 three_prime_UTR 84863692 84863728 84863692 ID=Msa1221310-mRNA-1:three_prime_utr;Parent=Msa1221310-mRNA-1
Gene Sequence

>Msa1221310

ATGGCTTCTACTACTACTTTGCTAGTGCTTCTTATTCCTCTGCTTTGGATTAATAATGTAGCATGTGCTGCTGGTAACTTCAACCAAGATTTTCAGATTACATGGGGAGATGGTCGTGCCAAAATACTCAACAACGCCAATCTTCTTACTCTGTCTCTTGACAAAGCCTCTGGCTCTGGCTTTCAATCCAAAAATGAATACTTATTTGGCAAAATTGATATGCAGATTAAGCTTGTTCCAGGCAACTCTGCTGGCACTGTCACTGCTTATTATCTATCATCAAAAGGAGGTGCATGGGATGAGATAGACTTTGAATTCTTAGGAAATTTGAGTGGTGATCCTTACATCCTTCACACCAATGTCTTTAGCCAAGGGAAAGGTAACAGAGAGCAACAATTTTACCTTTGGTTTGACCCAACTGCAGATTTTCACACATACTCAATTCTGTGGAATCCACAACGTATTGTTTTCTCTGTAGATGGAACTCCAATTAGGGAATTCAAGAACATGGAATCAAGTGGTGTTCCATTCCCCAAAAACCAACCAATGAGAATCTATTCTAGTCTTTGGAATGCTGATGATTGGGCTACAAGAGGTGGACTTGTTAAGACAGATTGGTCCAAAGCTCCATTTACCGCTTCTTACAGGAATTTCAATGCCAACAATGCTTGTACATGGAACAATGGAAAATCATCATGCAAATCATCATCAAAAGCCTCTGCTTCCTCATGGCTATCACAACAGCTTGACTCAACAGGTCTGCAGAGGCTGAGGTGGGTGCAGAAGAACTACATGATTTATAATTACTGCTCAGATAAGAAGAGATTTCCACAAGGCCTTCCAGTTGAATGCACTCACTAG

Protein sequence

>Msa1221310

MASTTTLLVLLIPLLWINNVACAAGNFNQDFQITWGDGRAKILNNANLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVPGNSAGTVTAYYLSSKGGAWDEIDFEFLGNLSGDPYILHTNVFSQGKGNREQQFYLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNMESSGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTASYRNFNANNACTWNNGKSSCKSSSKASASSWLSQQLDSTGLQRLRWVQKNYMIYNYCSDKKRFPQGLPVECTH*