Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152470 | KEH30043.1 | 95.652 | 46 | 2 | 0 | 1 | 46 | 1 | 46 | 5.42e-23 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152470 | A0A072ULU2 | 95.652 | 46 | 2 | 0 | 1 | 46 | 1 | 46 | 2.59e-23 | 94.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0810220 | Msa1152470 | 0.802286 | 6.028314e-49 | -8.615850e-47 |
| Msa1054810 | Msa1152470 | 0.800077 | 1.706894e-48 | -8.615850e-47 |
| Msa1152470 | Msa1403480 | 0.802769 | 4.794442e-49 | -8.615850e-47 |
| Msa1152470 | Msa1424290 | 0.801559 | 8.502257e-49 | -8.615850e-47 |
| Msa0925250 | Msa1152470 | 0.801789 | 7.627639e-49 | -8.615850e-47 |
| Msa0925290 | Msa1152470 | 0.801280 | 9.702114e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152470 | MtrunA17_Chr4g0029081 | 95.652 | 46 | 2 | 0 | 1 | 46 | 1 | 46 | 8.69e-27 | 93.6 |
| Msa1152470 | MtrunA17_Chr7g0262291 | 88.235 | 51 | 6 | 0 | 1 | 51 | 4 | 54 | 6.91e-26 | 91.3 |
| Msa1152470 | MtrunA17_Chr5g0447831 | 78.431 | 51 | 11 | 0 | 1 | 51 | 375 | 425 | 5.06e-18 | 77.8 |
| Msa1152470 | MtrunA17_Chr5g0448131 | 78.431 | 51 | 11 | 0 | 1 | 51 | 374 | 424 | 5.02e-17 | 75.1 |
| Msa1152470 | MtrunA17_Chr4g0056011 | 62.745 | 51 | 19 | 0 | 1 | 51 | 375 | 425 | 9.78e-12 | 60.1 |
| Msa1152470 | MtrunA17_Chr5g0436451 | 66.667 | 51 | 7 | 1 | 1 | 51 | 375 | 415 | 1.16e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTATCTGCTACATCTA+AGG | 0.222017 | 7_4:+38179155 | Msa1152470:CDS |
| GTAACAACAATTTAGAGATT+TGG | 0.250966 | 7_4:+38180609 | Msa1152470:three_prime_UTR |
| AGAACAATGTCTGGTTTACT+TGG | 0.347738 | 7_4:+38180233 | Msa1152470:intron |
| GAATAATGTCTAAGCTAAAT+AGG | 0.357719 | 7_4:-38180513 | None:intergenic |
| GTGTAGCAATAGCATGGATT+TGG | 0.417144 | 7_4:-38180297 | None:intergenic |
| TCATTAACTAGTGAAACCTT+TGG | 0.437784 | 7_4:-38179183 | None:intergenic |
| TGAGCTAATTGACAAAGCTT+CGG | 0.439718 | 7_4:-38180535 | None:intergenic |
| TAACTTACTAGAACAATGTC+TGG | 0.451496 | 7_4:+38180224 | Msa1152470:intron |
| GTAGCAGATAAAGTTGGAAA+TGG | 0.455975 | 7_4:-38179147 | None:intergenic |
| GGTTGTCTCTGCTACACAAC+AGG | 0.475736 | 7_4:+38179245 | Msa1152470:CDS |
| AAAGTTGGAAATGGTAACTT+GGG | 0.492147 | 7_4:-38179138 | None:intergenic |
| TAAAGTTGGAAATGGTAACT+TGG | 0.495805 | 7_4:-38179139 | None:intergenic |
| GAACAATGTCTGGTTTACTT+GGG | 0.510674 | 7_4:+38180234 | Msa1152470:intron |
| AGAAATAGCGGATGAGAGAA+AGG | 0.518377 | 7_4:+38179224 | Msa1152470:CDS |
| GAGAATGATAATGTAAATGA+AGG | 0.520490 | 7_4:+38180578 | Msa1152470:exon |
| TTAGATGTAGCAGATAAAGT+TGG | 0.526688 | 7_4:-38179153 | None:intergenic |
| AATGATAATGTAAATGAAGG+AGG | 0.528558 | 7_4:+38180581 | Msa1152470:exon |
| AACAATGTCTGGTTTACTTG+GGG | 0.535515 | 7_4:+38180235 | Msa1152470:CDS |
| ATGATAATGTAAATGAAGGA+GGG | 0.540562 | 7_4:+38180582 | Msa1152470:exon |
| ACTTTATCTGCTACATCTAA+GGG | 0.542719 | 7_4:+38179156 | Msa1152470:CDS |
| TAGCAATAGCATGGATTTGG+AGG | 0.546543 | 7_4:-38180294 | None:intergenic |
| TGATAATGTAAATGAAGGAG+GGG | 0.567534 | 7_4:+38180583 | Msa1152470:exon |
| GATTGAGAAAACAGAACGTA+AGG | 0.573319 | 7_4:+38180261 | Msa1152470:CDS |
| GGAAATGGTAACTTGGGTTG+TGG | 0.573827 | 7_4:-38179132 | None:intergenic |
| CAATAGCATGGATTTGGAGG+CGG | 0.581791 | 7_4:-38180291 | None:intergenic |
| TACATCTAAGGGAGAACCAA+AGG | 0.594122 | 7_4:+38179167 | Msa1152470:CDS |
| TTACATGTGTAGCAATAGCA+TGG | 0.607729 | 7_4:-38180303 | None:intergenic |
| GATGAATATACAAGAAATAG+CGG | 0.611131 | 7_4:+38179212 | Msa1152470:CDS |
| AAGGTTTCACTAGTTAATGA+CGG | 0.614585 | 7_4:+38179186 | Msa1152470:CDS |
| TGAGAAAACAGAACGTAAGG+TGG | 0.630458 | 7_4:+38180264 | Msa1152470:CDS |
| ACAATGTCTGGTTTACTTGG+GGG | 0.643464 | 7_4:+38180236 | Msa1152470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGAAAAAATAAATAACA+TGG | - | chr7_4:38179886-38179905 | None:intergenic | 10.0% |
| !!! | ATATTATTATTTTTAGGTAA+TGG | + | chr7_4:38180652-38180671 | Msa1152470:three_prime_UTR | 10.0% |
| !! | TATTGAAAAAATAAATAACA+TGG | - | chr7_4:38179886-38179905 | None:intergenic | 10.0% |
| !!! | ATATTATTATTTTTAGGTAA+TGG | + | chr7_4:38180652-38180671 | Msa1152470:three_prime_UTR | 10.0% |
| !! | AATACATAAATTGTCAAGTT+GGG | - | chr7_4:38179642-38179661 | None:intergenic | 20.0% |
| !! | AAATACATAAATTGTCAAGT+TGG | - | chr7_4:38179643-38179662 | None:intergenic | 20.0% |
| !!! | GTGTTAATTGTTATTATCTA+AGG | - | chr7_4:38179739-38179758 | None:intergenic | 20.0% |
| !! | GTTTATTGTTCTATACATAA+TGG | + | chr7_4:38180363-38180382 | Msa1152470:intron | 20.0% |
| !!! | CTGCAAAATTTAAAATATGT+GGG | - | chr7_4:38180479-38180498 | None:intergenic | 20.0% |
| !! | AATACATAAATTGTCAAGTT+GGG | - | chr7_4:38179642-38179661 | None:intergenic | 20.0% |
| !! | AAATACATAAATTGTCAAGT+TGG | - | chr7_4:38179643-38179662 | None:intergenic | 20.0% |
| !!! | GTGTTAATTGTTATTATCTA+AGG | - | chr7_4:38179739-38179758 | None:intergenic | 20.0% |
| !! | GTTTATTGTTCTATACATAA+TGG | + | chr7_4:38180363-38180382 | Msa1152470:intron | 20.0% |
| !!! | CTGCAAAATTTAAAATATGT+GGG | - | chr7_4:38180479-38180498 | None:intergenic | 20.0% |
| ! | GATGAATATACAAGAAATAG+CGG | + | chr7_4:38179212-38179231 | Msa1152470:CDS | 25.0% |
| !! | ATGGAACATTTAGTTTACAT+GGG | + | chr7_4:38179301-38179320 | Msa1152470:intron | 25.0% |
| !!! | GTTGGTAATTTAAAGTAACT+AGG | - | chr7_4:38179434-38179453 | None:intergenic | 25.0% |
| ! | AAAGATAGAAAACTTCAATC+TGG | - | chr7_4:38179790-38179809 | None:intergenic | 25.0% |
| !! | TAGTACAATTGTCTCTAAAA+AGG | + | chr7_4:38179835-38179854 | Msa1152470:intron | 25.0% |
| !! | TGATTTAGAACATGATTTGA+AGG | + | chr7_4:38179924-38179943 | Msa1152470:intron | 25.0% |
| ! | CAATATCAACTACTTGTTTA+AGG | + | chr7_4:38180035-38180054 | Msa1152470:intron | 25.0% |
| !! | CATTAGTTTATGTCTAAACA+AGG | + | chr7_4:38180096-38180115 | Msa1152470:intron | 25.0% |
| !! | TTGAATATGACTTCAAGTTT+CGG | + | chr7_4:38180178-38180197 | Msa1152470:intron | 25.0% |
| !! | TGTTTTCAATAATTATGCCA+AGG | - | chr7_4:38180437-38180456 | None:intergenic | 25.0% |
| !! | CCTGCAAAATTTAAAATATG+TGG | - | chr7_4:38180480-38180499 | None:intergenic | 25.0% |
| !!! | CCACATATTTTAAATTTTGC+AGG | + | chr7_4:38180477-38180496 | Msa1152470:intron | 25.0% |
| ! | GAATAATGTCTAAGCTAAAT+AGG | - | chr7_4:38180516-38180535 | None:intergenic | 25.0% |
| !! | GAGAATGATAATGTAAATGA+AGG | + | chr7_4:38180578-38180597 | Msa1152470:exon | 25.0% |
| !! | AATGATAATGTAAATGAAGG+AGG | + | chr7_4:38180581-38180600 | Msa1152470:exon | 25.0% |
| !! | ATGATAATGTAAATGAAGGA+GGG | + | chr7_4:38180582-38180601 | Msa1152470:exon | 25.0% |
| ! | GTAACAACAATTTAGAGATT+TGG | + | chr7_4:38180609-38180628 | Msa1152470:three_prime_UTR | 25.0% |
| ! | GATGAATATACAAGAAATAG+CGG | + | chr7_4:38179212-38179231 | Msa1152470:CDS | 25.0% |
| !! | ATGGAACATTTAGTTTACAT+GGG | + | chr7_4:38179301-38179320 | Msa1152470:intron | 25.0% |
| !!! | GTTGGTAATTTAAAGTAACT+AGG | - | chr7_4:38179434-38179453 | None:intergenic | 25.0% |
| ! | AAAGATAGAAAACTTCAATC+TGG | - | chr7_4:38179790-38179809 | None:intergenic | 25.0% |
| !! | TAGTACAATTGTCTCTAAAA+AGG | + | chr7_4:38179835-38179854 | Msa1152470:intron | 25.0% |
| !! | TGATTTAGAACATGATTTGA+AGG | + | chr7_4:38179924-38179943 | Msa1152470:intron | 25.0% |
| ! | CAATATCAACTACTTGTTTA+AGG | + | chr7_4:38180035-38180054 | Msa1152470:intron | 25.0% |
| !! | CATTAGTTTATGTCTAAACA+AGG | + | chr7_4:38180096-38180115 | Msa1152470:intron | 25.0% |
| !! | TTGAATATGACTTCAAGTTT+CGG | + | chr7_4:38180178-38180197 | Msa1152470:intron | 25.0% |
| !! | TGTTTTCAATAATTATGCCA+AGG | - | chr7_4:38180437-38180456 | None:intergenic | 25.0% |
| !! | CCTGCAAAATTTAAAATATG+TGG | - | chr7_4:38180480-38180499 | None:intergenic | 25.0% |
| !!! | CCACATATTTTAAATTTTGC+AGG | + | chr7_4:38180477-38180496 | Msa1152470:intron | 25.0% |
| ! | GAATAATGTCTAAGCTAAAT+AGG | - | chr7_4:38180516-38180535 | None:intergenic | 25.0% |
| !! | GAGAATGATAATGTAAATGA+AGG | + | chr7_4:38180578-38180597 | Msa1152470:exon | 25.0% |
| !! | AATGATAATGTAAATGAAGG+AGG | + | chr7_4:38180581-38180600 | Msa1152470:exon | 25.0% |
| !! | ATGATAATGTAAATGAAGGA+GGG | + | chr7_4:38180582-38180601 | Msa1152470:exon | 25.0% |
| ! | GTAACAACAATTTAGAGATT+TGG | + | chr7_4:38180609-38180628 | Msa1152470:three_prime_UTR | 25.0% |
| AAAGTTGGAAATGGTAACTT+GGG | - | chr7_4:38179141-38179160 | None:intergenic | 30.0% | |
| TAAAGTTGGAAATGGTAACT+TGG | - | chr7_4:38179142-38179161 | None:intergenic | 30.0% | |
| TTAGATGTAGCAGATAAAGT+TGG | - | chr7_4:38179156-38179175 | None:intergenic | 30.0% | |
| AACTTTATCTGCTACATCTA+AGG | + | chr7_4:38179155-38179174 | Msa1152470:CDS | 30.0% | |
| ACTTTATCTGCTACATCTAA+GGG | + | chr7_4:38179156-38179175 | Msa1152470:CDS | 30.0% | |
| TCATTAACTAGTGAAACCTT+TGG | - | chr7_4:38179186-38179205 | None:intergenic | 30.0% | |
| AAGGTTTCACTAGTTAATGA+CGG | + | chr7_4:38179186-38179205 | Msa1152470:CDS | 30.0% | |
| ! | GATGGAACATTTAGTTTACA+TGG | + | chr7_4:38179300-38179319 | Msa1152470:intron | 30.0% |
| TAGTTTACATGGGAAATACA+TGG | + | chr7_4:38179311-38179330 | Msa1152470:intron | 30.0% | |
| TGTTGCGTAAAACAAAGAAA+AGG | - | chr7_4:38179761-38179780 | None:intergenic | 30.0% | |
| AGAGACAATTGTACTAGATA+TGG | - | chr7_4:38179831-38179850 | None:intergenic | 30.0% | |
| !! | TGTAGGATATTGTGTTTTGA+AGG | + | chr7_4:38179959-38179978 | Msa1152470:intron | 30.0% |
| ! | GTAGTTGATATTGAATACCT+AGG | - | chr7_4:38180028-38180047 | None:intergenic | 30.0% |
| ! | TCAACTACTTGTTTAAGGTT+TGG | + | chr7_4:38180040-38180059 | Msa1152470:intron | 30.0% |
| TAACTTACTAGAACAATGTC+TGG | + | chr7_4:38180224-38180243 | Msa1152470:intron | 30.0% | |
| ! | TTTTAAATTTTGCAGGCTGA+TGG | + | chr7_4:38180484-38180503 | Msa1152470:intron | 30.0% |
| ! | TGATAATGTAAATGAAGGAG+GGG | + | chr7_4:38180583-38180602 | Msa1152470:exon | 30.0% |
| AAAGTTGGAAATGGTAACTT+GGG | - | chr7_4:38179141-38179160 | None:intergenic | 30.0% | |
| TAAAGTTGGAAATGGTAACT+TGG | - | chr7_4:38179142-38179161 | None:intergenic | 30.0% | |
| TTAGATGTAGCAGATAAAGT+TGG | - | chr7_4:38179156-38179175 | None:intergenic | 30.0% | |
| AACTTTATCTGCTACATCTA+AGG | + | chr7_4:38179155-38179174 | Msa1152470:CDS | 30.0% | |
| ACTTTATCTGCTACATCTAA+GGG | + | chr7_4:38179156-38179175 | Msa1152470:CDS | 30.0% | |
| TCATTAACTAGTGAAACCTT+TGG | - | chr7_4:38179186-38179205 | None:intergenic | 30.0% | |
| AAGGTTTCACTAGTTAATGA+CGG | + | chr7_4:38179186-38179205 | Msa1152470:CDS | 30.0% | |
| ! | GATGGAACATTTAGTTTACA+TGG | + | chr7_4:38179300-38179319 | Msa1152470:intron | 30.0% |
| TAGTTTACATGGGAAATACA+TGG | + | chr7_4:38179311-38179330 | Msa1152470:intron | 30.0% | |
| TGTTGCGTAAAACAAAGAAA+AGG | - | chr7_4:38179761-38179780 | None:intergenic | 30.0% | |
| AGAGACAATTGTACTAGATA+TGG | - | chr7_4:38179831-38179850 | None:intergenic | 30.0% | |
| !! | TGTAGGATATTGTGTTTTGA+AGG | + | chr7_4:38179959-38179978 | Msa1152470:intron | 30.0% |
| ! | GTAGTTGATATTGAATACCT+AGG | - | chr7_4:38180028-38180047 | None:intergenic | 30.0% |
| ! | TCAACTACTTGTTTAAGGTT+TGG | + | chr7_4:38180040-38180059 | Msa1152470:intron | 30.0% |
| TAACTTACTAGAACAATGTC+TGG | + | chr7_4:38180224-38180243 | Msa1152470:intron | 30.0% | |
| ! | TTTTAAATTTTGCAGGCTGA+TGG | + | chr7_4:38180484-38180503 | Msa1152470:intron | 30.0% |
| ! | TGATAATGTAAATGAAGGAG+GGG | + | chr7_4:38180583-38180602 | Msa1152470:exon | 30.0% |
| GTAGCAGATAAAGTTGGAAA+TGG | - | chr7_4:38179150-38179169 | None:intergenic | 35.0% | |
| TATGTGAGTAAGTCAAGATG+AGG | + | chr7_4:38179336-38179355 | Msa1152470:intron | 35.0% | |
| AACAAACTAATCACTTGCCT+TGG | - | chr7_4:38179535-38179554 | None:intergenic | 35.0% | |
| TATTGAATAACTGCCCATGA+GGG | - | chr7_4:38179692-38179711 | None:intergenic | 35.0% | |
| ATATTGAATAACTGCCCATG+AGG | - | chr7_4:38179693-38179712 | None:intergenic | 35.0% | |
| !! | AGTTGGTTTGCAAGGATAAT+AGG | + | chr7_4:38179994-38180013 | Msa1152470:intron | 35.0% |
| GATAATAGGATATCACACCT+AGG | + | chr7_4:38180008-38180027 | Msa1152470:intron | 35.0% | |
| ! | AGAACAATGTCTGGTTTACT+TGG | + | chr7_4:38180233-38180252 | Msa1152470:intron | 35.0% |
| ! | GAACAATGTCTGGTTTACTT+GGG | + | chr7_4:38180234-38180253 | Msa1152470:intron | 35.0% |
| ! | AACAATGTCTGGTTTACTTG+GGG | + | chr7_4:38180235-38180254 | Msa1152470:CDS | 35.0% |
| GATTGAGAAAACAGAACGTA+AGG | + | chr7_4:38180261-38180280 | Msa1152470:CDS | 35.0% | |
| TTACATGTGTAGCAATAGCA+TGG | - | chr7_4:38180306-38180325 | None:intergenic | 35.0% | |
| !! | TTGACATTGCTTTGTTTCCT+TGG | + | chr7_4:38180417-38180436 | Msa1152470:intron | 35.0% |
| TGAGCTAATTGACAAAGCTT+CGG | - | chr7_4:38180538-38180557 | None:intergenic | 35.0% | |
| GTAGCAGATAAAGTTGGAAA+TGG | - | chr7_4:38179150-38179169 | None:intergenic | 35.0% | |
| TATGTGAGTAAGTCAAGATG+AGG | + | chr7_4:38179336-38179355 | Msa1152470:intron | 35.0% | |
| AACAAACTAATCACTTGCCT+TGG | - | chr7_4:38179535-38179554 | None:intergenic | 35.0% | |
| TATTGAATAACTGCCCATGA+GGG | - | chr7_4:38179692-38179711 | None:intergenic | 35.0% | |
| ATATTGAATAACTGCCCATG+AGG | - | chr7_4:38179693-38179712 | None:intergenic | 35.0% | |
| !! | AGTTGGTTTGCAAGGATAAT+AGG | + | chr7_4:38179994-38180013 | Msa1152470:intron | 35.0% |
| GATAATAGGATATCACACCT+AGG | + | chr7_4:38180008-38180027 | Msa1152470:intron | 35.0% | |
| ! | AGAACAATGTCTGGTTTACT+TGG | + | chr7_4:38180233-38180252 | Msa1152470:intron | 35.0% |
| ! | GAACAATGTCTGGTTTACTT+GGG | + | chr7_4:38180234-38180253 | Msa1152470:intron | 35.0% |
| ! | AACAATGTCTGGTTTACTTG+GGG | + | chr7_4:38180235-38180254 | Msa1152470:CDS | 35.0% |
| GATTGAGAAAACAGAACGTA+AGG | + | chr7_4:38180261-38180280 | Msa1152470:CDS | 35.0% | |
| TTACATGTGTAGCAATAGCA+TGG | - | chr7_4:38180306-38180325 | None:intergenic | 35.0% | |
| !! | TTGACATTGCTTTGTTTCCT+TGG | + | chr7_4:38180417-38180436 | Msa1152470:intron | 35.0% |
| TGAGCTAATTGACAAAGCTT+CGG | - | chr7_4:38180538-38180557 | None:intergenic | 35.0% | |
| TACATCTAAGGGAGAACCAA+AGG | + | chr7_4:38179167-38179186 | Msa1152470:CDS | 40.0% | |
| !! | AGAAATAGCGGATGAGAGAA+AGG | + | chr7_4:38179224-38179243 | Msa1152470:CDS | 40.0% |
| ATGATCCTTAGAGTTGCTGA+TGG | + | chr7_4:38179282-38179301 | Msa1152470:intron | 40.0% | |
| ATGTTCCATCAGCAACTCTA+AGG | - | chr7_4:38179290-38179309 | None:intergenic | 40.0% | |
| CTTGTCTAAACACTTGGAAG+CGG | - | chr7_4:38179511-38179530 | None:intergenic | 40.0% | |
| !! | CTTGGTCTTGTCTAAACACT+TGG | - | chr7_4:38179517-38179536 | None:intergenic | 40.0% |
| CAAGTGTTTAGACAAGACCA+AGG | + | chr7_4:38179515-38179534 | Msa1152470:intron | 40.0% | |
| ACTTACGATTGAATCCCTCA+TGG | + | chr7_4:38179675-38179694 | Msa1152470:intron | 40.0% | |
| CTTACGATTGAATCCCTCAT+GGG | + | chr7_4:38179676-38179695 | Msa1152470:intron | 40.0% | |
| ! | GAAGGCTGTCTTTGTTATGT+AGG | + | chr7_4:38179942-38179961 | Msa1152470:intron | 40.0% |
| !! | CTGACTTTAGTTGGTTTGCA+AGG | + | chr7_4:38179986-38180005 | Msa1152470:intron | 40.0% |
| ! | ACAATGTCTGGTTTACTTGG+GGG | + | chr7_4:38180236-38180255 | Msa1152470:CDS | 40.0% |
| TGAGAAAACAGAACGTAAGG+TGG | + | chr7_4:38180264-38180283 | Msa1152470:CDS | 40.0% | |
| TAGCAATAGCATGGATTTGG+AGG | - | chr7_4:38180297-38180316 | None:intergenic | 40.0% | |
| GTGTAGCAATAGCATGGATT+TGG | - | chr7_4:38180300-38180319 | None:intergenic | 40.0% | |
| TACATCTAAGGGAGAACCAA+AGG | + | chr7_4:38179167-38179186 | Msa1152470:CDS | 40.0% | |
| !! | AGAAATAGCGGATGAGAGAA+AGG | + | chr7_4:38179224-38179243 | Msa1152470:CDS | 40.0% |
| ATGATCCTTAGAGTTGCTGA+TGG | + | chr7_4:38179282-38179301 | Msa1152470:intron | 40.0% | |
| ATGTTCCATCAGCAACTCTA+AGG | - | chr7_4:38179290-38179309 | None:intergenic | 40.0% | |
| CTTGTCTAAACACTTGGAAG+CGG | - | chr7_4:38179511-38179530 | None:intergenic | 40.0% | |
| !! | CTTGGTCTTGTCTAAACACT+TGG | - | chr7_4:38179517-38179536 | None:intergenic | 40.0% |
| CAAGTGTTTAGACAAGACCA+AGG | + | chr7_4:38179515-38179534 | Msa1152470:intron | 40.0% | |
| ACTTACGATTGAATCCCTCA+TGG | + | chr7_4:38179675-38179694 | Msa1152470:intron | 40.0% | |
| CTTACGATTGAATCCCTCAT+GGG | + | chr7_4:38179676-38179695 | Msa1152470:intron | 40.0% | |
| ! | GAAGGCTGTCTTTGTTATGT+AGG | + | chr7_4:38179942-38179961 | Msa1152470:intron | 40.0% |
| !! | CTGACTTTAGTTGGTTTGCA+AGG | + | chr7_4:38179986-38180005 | Msa1152470:intron | 40.0% |
| ! | ACAATGTCTGGTTTACTTGG+GGG | + | chr7_4:38180236-38180255 | Msa1152470:CDS | 40.0% |
| TGAGAAAACAGAACGTAAGG+TGG | + | chr7_4:38180264-38180283 | Msa1152470:CDS | 40.0% | |
| TAGCAATAGCATGGATTTGG+AGG | - | chr7_4:38180297-38180316 | None:intergenic | 40.0% | |
| GTGTAGCAATAGCATGGATT+TGG | - | chr7_4:38180300-38180319 | None:intergenic | 40.0% | |
| ! | GGAAATGGTAACTTGGGTTG+TGG | - | chr7_4:38179135-38179154 | None:intergenic | 45.0% |
| AACACAGACAGAGAGAGAGT+TGG | - | chr7_4:38179456-38179475 | None:intergenic | 45.0% | |
| TGTGTTTAGTTGCAGCAGCA+GGG | + | chr7_4:38179470-38179489 | Msa1152470:intron | 45.0% | |
| ! | GAAGGCTGACTGACTTTAGT+TGG | + | chr7_4:38179977-38179996 | Msa1152470:intron | 45.0% |
| CAATAGCATGGATTTGGAGG+CGG | - | chr7_4:38180294-38180313 | None:intergenic | 45.0% | |
| ! | GGAAATGGTAACTTGGGTTG+TGG | - | chr7_4:38179135-38179154 | None:intergenic | 45.0% |
| AACACAGACAGAGAGAGAGT+TGG | - | chr7_4:38179456-38179475 | None:intergenic | 45.0% | |
| TGTGTTTAGTTGCAGCAGCA+GGG | + | chr7_4:38179470-38179489 | Msa1152470:intron | 45.0% | |
| ! | GAAGGCTGACTGACTTTAGT+TGG | + | chr7_4:38179977-38179996 | Msa1152470:intron | 45.0% |
| CAATAGCATGGATTTGGAGG+CGG | - | chr7_4:38180294-38180313 | None:intergenic | 45.0% | |
| !!! | ATTATCATATTATTATTTTT+AGG | + | chr7_4:38180646-38180665 | Msa1152470:three_prime_UTR | 5.0% |
| !!! | ATTATCATATTATTATTTTT+AGG | + | chr7_4:38180646-38180665 | Msa1152470:three_prime_UTR | 5.0% |
| GGTTGTCTCTGCTACACAAC+AGG | + | chr7_4:38179245-38179264 | Msa1152470:CDS | 50.0% | |
| ! | CAGACAGAGAGAGAGTTGGT+TGG | - | chr7_4:38179452-38179471 | None:intergenic | 50.0% |
| CTGTGTTTAGTTGCAGCAGC+AGG | + | chr7_4:38179469-38179488 | Msa1152470:intron | 50.0% | |
| GGTTGTCTCTGCTACACAAC+AGG | + | chr7_4:38179245-38179264 | Msa1152470:CDS | 50.0% | |
| ! | CAGACAGAGAGAGAGTTGGT+TGG | - | chr7_4:38179452-38179471 | None:intergenic | 50.0% |
| CTGTGTTTAGTTGCAGCAGC+AGG | + | chr7_4:38179469-38179488 | Msa1152470:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 38179114 | 38180723 | 38179114 | ID=Msa1152470;Name=Msa1152470 |
| chr7_4 | mRNA | 38179114 | 38180723 | 38179114 | ID=Msa1152470-mRNA-1;Parent=Msa1152470;Name=Msa1152470-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.33|1|1|1|3|138|108 |
| chr7_4 | exon | 38179114 | 38179266 | 38179114 | ID=Msa1152470-mRNA-1:exon:9090;Parent=Msa1152470-mRNA-1 |
| chr7_4 | exon | 38180235 | 38180321 | 38180235 | ID=Msa1152470-mRNA-1:exon:9091;Parent=Msa1152470-mRNA-1 |
| chr7_4 | exon | 38180499 | 38180723 | 38180499 | ID=Msa1152470-mRNA-1:exon:9092;Parent=Msa1152470-mRNA-1 |
| chr7_4 | CDS | 38179114 | 38179266 | 38179114 | ID=Msa1152470-mRNA-1:cds;Parent=Msa1152470-mRNA-1 |
| chr7_4 | CDS | 38180235 | 38180321 | 38180235 | ID=Msa1152470-mRNA-1:cds;Parent=Msa1152470-mRNA-1 |
| chr7_4 | CDS | 38180499 | 38180585 | 38180499 | ID=Msa1152470-mRNA-1:cds;Parent=Msa1152470-mRNA-1 |
| chr7_4 | three_prime_UTR | 38180586 | 38180723 | 38180586 | ID=Msa1152470-mRNA-1:three_prime_utr;Parent=Msa1152470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
