Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110070 | XP_003623570.1 | 96.147 | 571 | 20 | 2 | 1 | 570 | 1 | 570 | 0.0 | 1100 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110070 | sp|F4ISY0|Y2837_ARATH | 42.294 | 558 | 247 | 14 | 14 | 555 | 6 | 504 | 6.05e-108 | 336 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110070 | G7KX28 | 96.147 | 571 | 20 | 2 | 1 | 570 | 1 | 570 | 0.0 | 1100 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0042610 | Msa1110070 | 0.802991 | 4.313640e-49 | -8.615850e-47 |
Msa0117480 | Msa1110070 | 0.800357 | 1.497026e-48 | -8.615850e-47 |
Msa0689230 | Msa1110070 | 0.828791 | 7.385135e-55 | -8.615850e-47 |
Msa0302170 | Msa1110070 | 0.811088 | 8.337815e-51 | -8.615850e-47 |
Msa1110070 | Msa1153730 | 0.803805 | 2.925378e-49 | -8.615850e-47 |
Msa1110070 | Msa1358220 | 0.823728 | 1.184728e-53 | -8.615850e-47 |
Msa1110070 | Msa1374550 | 0.813360 | 2.662898e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110070 | MtrunA17_Chr7g0244501 | 96.147 | 571 | 20 | 2 | 1 | 570 | 1 | 570 | 0.0 | 1100 |
Msa1110070 | MtrunA17_Chr4g0013151 | 64.195 | 553 | 160 | 12 | 12 | 552 | 76 | 602 | 0.0 | 588 |
Msa1110070 | MtrunA17_Chr3g0114551 | 35.788 | 584 | 305 | 10 | 26 | 552 | 21 | 591 | 1.65e-75 | 251 |
Msa1110070 | MtrunA17_Chr5g0438111 | 36.364 | 561 | 280 | 14 | 26 | 562 | 27 | 534 | 1.64e-70 | 236 |
Msa1110070 | MtrunA17_Chr3g0133891 | 31.408 | 277 | 186 | 2 | 176 | 448 | 595 | 871 | 3.85e-26 | 113 |
Msa1110070 | MtrunA17_Chr1g0153431 | 30.072 | 276 | 165 | 5 | 176 | 434 | 576 | 840 | 9.26e-20 | 93.6 |
Msa1110070 | MtrunA17_Chr8g0369191 | 27.925 | 265 | 184 | 2 | 176 | 433 | 285 | 549 | 5.51e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110070 | AT2G38370.1 | 42.294 | 558 | 247 | 14 | 14 | 555 | 6 | 504 | 6.15e-109 | 336 |
Msa1110070 | AT2G38370.2 | 42.294 | 558 | 247 | 14 | 14 | 555 | 23 | 521 | 6.50e-109 | 337 |
Msa1110070 | AT2G40480.1 | 36.531 | 542 | 259 | 15 | 26 | 562 | 54 | 515 | 1.86e-65 | 222 |
Msa1110070 | AT3G51720.1 | 36.007 | 536 | 182 | 19 | 26 | 555 | 8 | 388 | 3.00e-58 | 200 |
Msa1110070 | AT3G56270.1 | 34.052 | 464 | 218 | 15 | 27 | 486 | 41 | 420 | 1.53e-38 | 147 |
Msa1110070 | AT2G26570.1 | 32.414 | 290 | 184 | 4 | 166 | 444 | 452 | 740 | 1.33e-26 | 115 |
Msa1110070 | AT2G26570.1 | 40.496 | 121 | 52 | 3 | 11 | 123 | 145 | 253 | 1.85e-13 | 73.9 |
Msa1110070 | AT2G26570.2 | 32.414 | 290 | 184 | 4 | 166 | 444 | 452 | 740 | 1.33e-26 | 115 |
Msa1110070 | AT2G26570.2 | 40.496 | 121 | 52 | 3 | 11 | 123 | 145 | 253 | 1.85e-13 | 73.9 |
Msa1110070 | AT5G42880.1 | 33.203 | 256 | 157 | 4 | 193 | 434 | 413 | 668 | 4.46e-19 | 91.7 |
Msa1110070 | AT4G33390.1 | 32.210 | 267 | 177 | 2 | 176 | 438 | 460 | 726 | 2.19e-18 | 89.7 |
Msa1110070 | AT4G33390.1 | 41.000 | 100 | 55 | 1 | 24 | 123 | 149 | 244 | 4.00e-12 | 69.7 |
Msa1110070 | AT1G45545.2 | 28.185 | 259 | 161 | 2 | 176 | 432 | 444 | 679 | 1.76e-15 | 80.5 |
Msa1110070 | AT1G45545.1 | 28.185 | 259 | 161 | 2 | 176 | 432 | 443 | 678 | 1.79e-15 | 80.5 |
Find 116 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGAAGTTGAAGAGGCTTTA+AGG | 0.157861 | 7_3:+54669833 | Msa1110070:CDS |
ATTCGGTTACTTGATGTAAA+TGG | 0.201330 | 7_3:+54669946 | Msa1110070:CDS |
TTCTTCAAGGGCCTTCTTGC+AGG | 0.218507 | 7_3:-54669773 | None:intergenic |
TCTTCGGTGGTGTTGGTTAC+TGG | 0.225889 | 7_3:+54667387 | Msa1110070:CDS |
ATCTCTCACTTCTCATTCTA+AGG | 0.237177 | 7_3:+54667430 | Msa1110070:CDS |
TGATGTAAATGGATTGAATT+TGG | 0.242394 | 7_3:+54669957 | Msa1110070:CDS |
CAAATCTTCAACAAGCCTTT+TGG | 0.268546 | 7_3:-54668903 | None:intergenic |
GGCAATATCATGAGTAGTTT+TGG | 0.272866 | 7_3:-54669140 | None:intergenic |
TCTGCTAAGAGAAAGAAATT+TGG | 0.281302 | 7_3:+54670204 | Msa1110070:CDS |
TTGTGTCGTGTTGGAGTGTT+TGG | 0.292270 | 7_3:-54667158 | None:intergenic |
TGCCACTTGCAGTCTTAATC+TGG | 0.293211 | 7_3:-54669293 | None:intergenic |
CTGCTAAGAGAAAGAAATTT+GGG | 0.308164 | 7_3:+54670205 | Msa1110070:CDS |
CAAAAGTAGCGTCTCCTATT+AGG | 0.313248 | 7_3:+54670351 | Msa1110070:three_prime_UTR |
TGCCGCAACCAACCTGATTT+CGG | 0.328768 | 7_3:-54669473 | None:intergenic |
CTTGCAGTCTTAATCTGGTT+TGG | 0.345195 | 7_3:-54669288 | None:intergenic |
GGAATGTGCTGAGGCCTAAT+AGG | 0.345830 | 7_3:-54670365 | None:intergenic |
CCCTTTGTAGAGCTTCTTCA+AGG | 0.349108 | 7_3:-54669786 | None:intergenic |
GTGGCAAAAGGTGCTGCTTC+TGG | 0.361274 | 7_3:+54669310 | Msa1110070:CDS |
TTCTCCAGACTTGATACTAA+TGG | 0.384913 | 7_3:+54669090 | Msa1110070:CDS |
GAGCAAACTGAGAAAGAAAA+TGG | 0.397534 | 7_3:+54670165 | Msa1110070:CDS |
GATAGAGTCGGCTTTAAAAC+AGG | 0.402456 | 7_3:-54669997 | None:intergenic |
ACCACATAGAAGAGCTTGAC+AGG | 0.409010 | 7_3:+54668789 | Msa1110070:CDS |
ATCGGTTCTTCAAACTCTTC+TGG | 0.412083 | 7_3:-54670054 | None:intergenic |
TGATAAGAACTGCCGAAATC+AGG | 0.412600 | 7_3:+54669461 | Msa1110070:CDS |
AGAGATGGAAGATTGGTAAA+GGG | 0.415316 | 7_3:-54667413 | None:intergenic |
GGCTGCAGATAGAGGGAAGT+TGG | 0.415532 | 7_3:+54669813 | Msa1110070:CDS |
TTAAAGCCGACTCTATCAAT+AGG | 0.421757 | 7_3:+54670003 | Msa1110070:CDS |
ACTCTGGTCCATCTGATCAT+AGG | 0.422249 | 7_3:+54669917 | Msa1110070:CDS |
CAAATTCATTCACTTGAAGA+TGG | 0.426934 | 7_3:+54667232 | Msa1110070:exon |
CTGAAACAATATTGAATCTC+GGG | 0.430024 | 7_3:+54668951 | Msa1110070:CDS |
AATTCCATTAGTATCAAGTC+TGG | 0.436262 | 7_3:-54669094 | None:intergenic |
AGAAGTGAGAGATGGAAGAT+TGG | 0.437847 | 7_3:-54667420 | None:intergenic |
GACGACGTATCAAGCTGAAC+CGG | 0.439494 | 7_3:+54667274 | Msa1110070:CDS |
ATCTTCAAAGAACAAGATAA+TGG | 0.450459 | 7_3:+54667301 | Msa1110070:CDS |
AAACAGCAGAAGGTGTCATT+AGG | 0.452154 | 7_3:+54670102 | Msa1110070:CDS |
AAGAACTGATCCTAAAAGAA+AGG | 0.454762 | 7_3:+54668846 | Msa1110070:CDS |
TAGCTCTTGTCATTGCTAGA+TGG | 0.456272 | 7_3:-54670324 | None:intergenic |
GAGAGATGGAAGATTGGTAA+AGG | 0.460116 | 7_3:-54667414 | None:intergenic |
AGGGAAGTTGGAAGTTGAAG+AGG | 0.467502 | 7_3:+54669825 | Msa1110070:CDS |
GCTTCTTTCACAGATTCAAA+TGG | 0.467986 | 7_3:-54667356 | None:intergenic |
AACTAAGTTAATATAAAAGC+AGG | 0.469656 | 7_3:-54670530 | None:intergenic |
AGGCATAGAACATTCCTTCA+TGG | 0.469854 | 7_3:-54669056 | None:intergenic |
AAAGAAGCTGTTAACCTCTT+CGG | 0.478043 | 7_3:+54667371 | Msa1110070:CDS |
TCTGAAACAATATTGAATCT+CGG | 0.479141 | 7_3:+54668950 | Msa1110070:CDS |
TGTAGATGAGAAAGAAGTAA+AGG | 0.480056 | 7_3:+54669000 | Msa1110070:CDS |
CTAAATACCATACAAAATGT+AGG | 0.483597 | 7_3:-54670498 | None:intergenic |
CGCTTCTGCATACACTCGTC+TGG | 0.489501 | 7_3:-54669577 | None:intergenic |
AAGAATTAGAAAAGACCAAA+AGG | 0.492625 | 7_3:+54668888 | Msa1110070:CDS |
CTGATCATAGGAGAGATATT+CGG | 0.493121 | 7_3:+54669929 | Msa1110070:CDS |
TGCCGAAATCAGGTTGGTTG+CGG | 0.495008 | 7_3:+54669471 | Msa1110070:CDS |
CAGGGAGAAACTAGAGGAGC+AGG | 0.495153 | 7_3:+54668808 | Msa1110070:CDS |
GTTAACCTCTTCGGTGGTGT+TGG | 0.495906 | 7_3:+54667380 | Msa1110070:CDS |
TTGAAGAGGCTTTAAGGAAG+TGG | 0.497849 | 7_3:+54669839 | Msa1110070:CDS |
AGTCGGCTTTAAAACAGGCT+TGG | 0.498226 | 7_3:-54669992 | None:intergenic |
AGTTCTGTTGTAACATCTAA+AGG | 0.502149 | 7_3:-54669337 | None:intergenic |
AGGGTAGAGGCTGCAGATAG+AGG | 0.502926 | 7_3:+54669805 | Msa1110070:CDS |
ATTCACCTCAAGTTCAGCAT+TGG | 0.508102 | 7_3:-54670279 | None:intergenic |
AGAACTGATCCTAAAAGAAA+GGG | 0.516905 | 7_3:+54668847 | Msa1110070:CDS |
GGGTAGAGGCTGCAGATAGA+GGG | 0.517190 | 7_3:+54669806 | Msa1110070:CDS |
AGAGGAGCAGGCAAGAGCGT+TGG | 0.517338 | 7_3:+54668820 | Msa1110070:CDS |
CCCTGTCAAGCTCTTCTATG+TGG | 0.518116 | 7_3:-54668790 | None:intergenic |
CAATAGGACAAATACTGAGC+AGG | 0.522093 | 7_3:+54670019 | Msa1110070:CDS |
GGCATAGAACATTCCTTCAT+GGG | 0.522442 | 7_3:-54669055 | None:intergenic |
GATACTAATGGAATTGAAGC+AGG | 0.525759 | 7_3:+54669102 | Msa1110070:CDS |
TTAAGACTGCAAGTGGCAAA+AGG | 0.531244 | 7_3:+54669298 | Msa1110070:CDS |
TGTGTCGTGTTGGAGTGTTT+GGG | 0.531540 | 7_3:-54667157 | None:intergenic |
TCAAGTCTGGAGAAGATACA+TGG | 0.533490 | 7_3:-54669081 | None:intergenic |
TAAATACCATACAAAATGTA+GGG | 0.543938 | 7_3:-54670497 | None:intergenic |
TCAGTTTGCTCGTCAAACAA+TGG | 0.549642 | 7_3:-54670153 | None:intergenic |
ATTTGTCCTATTGATAGAGT+CGG | 0.552627 | 7_3:-54670009 | None:intergenic |
CGGCCTCTGAACTCAATCGA+TGG | 0.552819 | 7_3:-54669360 | None:intergenic |
CCTTTGTAGAGCTTCTTCAA+GGG | 0.554451 | 7_3:-54669785 | None:intergenic |
GAACCTCAGACGGACTCGAT+TGG | 0.556300 | 7_3:-54669027 | None:intergenic |
TTTGAAGAACCGATGGTGCA+TGG | 0.559513 | 7_3:+54670063 | Msa1110070:CDS |
AACCAGATTAAGACTGCAAG+TGG | 0.562004 | 7_3:+54669291 | Msa1110070:CDS |
TGAGGTTCTTCAACCCATGA+AGG | 0.563383 | 7_3:+54669042 | Msa1110070:CDS |
ATATCTCTCCTATGATCAGA+TGG | 0.563474 | 7_3:-54669925 | None:intergenic |
TTGTTCTTTGAAGATGAACC+CGG | 0.563644 | 7_3:-54667293 | None:intergenic |
ACTCGTCTGGTGTACCCTCA+TGG | 0.568839 | 7_3:-54669564 | None:intergenic |
CAATGCGTTAATTTCTGCAA+GGG | 0.572501 | 7_3:-54669536 | None:intergenic |
TTAGAATGAGAAGTGAGAGA+TGG | 0.574843 | 7_3:-54667428 | None:intergenic |
TTCAACAGTAGCTCGTACAT+CGG | 0.575007 | 7_3:-54669161 | None:intergenic |
TTAAGGAAGTGGCGATCTGA+CGG | 0.579749 | 7_3:+54669850 | Msa1110070:CDS |
AGAAGTTCAAACCTGCAAGA+AGG | 0.580057 | 7_3:+54669762 | Msa1110070:CDS |
CCTTGAAGAAGCTCTACAAA+GGG | 0.582325 | 7_3:+54669786 | Msa1110070:CDS |
GTGAAGATGTTGTGTCGTGT+TGG | 0.585533 | 7_3:-54667167 | None:intergenic |
TAGGCCTCAGCACATTCCCT+AGG | 0.586745 | 7_3:+54670370 | Msa1110070:three_prime_UTR |
TTTGAAATCAAAGCTACAGA+AGG | 0.588441 | 7_3:+54668922 | Msa1110070:CDS |
GTGTCATTAGGTCATATGCT+TGG | 0.589947 | 7_3:+54670114 | Msa1110070:CDS |
CCCTTGAAGAAGCTCTACAA+AGG | 0.590773 | 7_3:+54669785 | Msa1110070:CDS |
ATGGGTTGAAGAACCTCAGA+CGG | 0.594605 | 7_3:-54669037 | None:intergenic |
ACAATGCGTTAATTTCTGCA+AGG | 0.601615 | 7_3:-54669537 | None:intergenic |
AGAAACCAATGCTGAACTTG+AGG | 0.604096 | 7_3:+54670274 | Msa1110070:CDS |
AGAAGCTCTACAAAGGGTAG+AGG | 0.607835 | 7_3:+54669792 | Msa1110070:CDS |
ACTATTTCTCCATGCACCAT+CGG | 0.609425 | 7_3:-54670072 | None:intergenic |
ACGACGTATCAAGCTGAACC+GGG | 0.613614 | 7_3:+54667275 | Msa1110070:CDS |
GGTTGCGGCAAGGAAAATGA+AGG | 0.614865 | 7_3:+54669486 | Msa1110070:CDS |
AAACCAATCGAGTCCGTCTG+AGG | 0.623782 | 7_3:+54669024 | Msa1110070:CDS |
AACGCATTGTCTAGCCATGA+GGG | 0.624553 | 7_3:+54669550 | Msa1110070:CDS |
TAACGCATTGTCTAGCCATG+AGG | 0.637064 | 7_3:+54669549 | Msa1110070:CDS |
AGAAGAGTTTGAAGAACCGA+TGG | 0.638252 | 7_3:+54670056 | Msa1110070:CDS |
AAATCAGGTTGGTTGCGGCA+AGG | 0.638872 | 7_3:+54669476 | Msa1110070:CDS |
ACTAAGTTAATATAAAAGCA+GGG | 0.639970 | 7_3:-54670529 | None:intergenic |
TCGTAAAGCTCAAGAAGCAG+AGG | 0.644575 | 7_3:+54669642 | Msa1110070:CDS |
AGCACCTAGGGAATGTGCTG+AGG | 0.644735 | 7_3:-54670374 | None:intergenic |
GAAGCTGTTAACCTCTTCGG+TGG | 0.645746 | 7_3:+54667374 | Msa1110070:CDS |
AAGAACTGCCGAAATCAGGT+TGG | 0.651437 | 7_3:+54669465 | Msa1110070:CDS |
AGTAACCAACACCACCGAAG+AGG | 0.655481 | 7_3:-54667385 | None:intergenic |
CACTTGAGAAAACCCGTGAG+AGG | 0.664946 | 7_3:+54669218 | Msa1110070:CDS |
TCTGGAGAAGATACATGGGA+AGG | 0.668166 | 7_3:-54669076 | None:intergenic |
GGTGCATGGAGAAATAGTCT+CGG | 0.669815 | 7_3:+54670077 | Msa1110070:CDS |
ACTCCATCGATTGAGTTCAG+AGG | 0.670068 | 7_3:+54669357 | Msa1110070:CDS |
CAAGTCTGGAGAAGATACAT+GGG | 0.676113 | 7_3:-54669080 | None:intergenic |
GCTTGACAGGGAGAAACTAG+AGG | 0.676961 | 7_3:+54668802 | Msa1110070:CDS |
CCACATAGAAGAGCTTGACA+GGG | 0.677555 | 7_3:+54668790 | Msa1110070:CDS |
AGTCTCGGTGAAACAGCAGA+AGG | 0.690368 | 7_3:+54670092 | Msa1110070:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATTTATATA+TGG | + | chr7_3:54667522-54667541 | Msa1110070:intron | 0.0% |
!! | ATATATATATATATATATAT+AGG | - | chr7_3:54667507-54667526 | None:intergenic | 0.0% |
!!! | GTTTTTTTTTTTTTTTTTAC+TGG | + | chr7_3:54667826-54667845 | Msa1110070:intron | 10.0% |
!!! | AATCTAATTTTTGATATATA+TGG | - | chr7_3:54668299-54668318 | None:intergenic | 10.0% |
!!! | AATTGACATTTTTTCATTTT+GGG | - | chr7_3:54668359-54668378 | None:intergenic | 15.0% |
!!! | GATTTTGTTTTCAAAATTTT+GGG | + | chr7_3:54668456-54668475 | Msa1110070:intron | 15.0% |
!!! | ATTTTGTTTTCAAAATTTTG+GGG | + | chr7_3:54668457-54668476 | Msa1110070:intron | 15.0% |
!!! | TTTATTAATTTTGCGTATTT+GGG | + | chr7_3:54668540-54668559 | Msa1110070:intron | 15.0% |
!! | TTTAGTTATAACTTTGCTAA+AGG | + | chr7_3:54667598-54667617 | Msa1110070:intron | 20.0% |
!! | AAACTATTTATGTGACTAAT+AGG | + | chr7_3:54667804-54667823 | Msa1110070:intron | 20.0% |
!!! | TGTAATTTTGATGTCAAATA+TGG | + | chr7_3:54668033-54668052 | Msa1110070:intron | 20.0% |
!! | AAACAATGTAACTATAAATG+AGG | - | chr7_3:54668180-54668199 | None:intergenic | 20.0% |
!!! | GAATTGACATTTTTTCATTT+TGG | - | chr7_3:54668360-54668379 | None:intergenic | 20.0% |
!!! | CGATTTTGTTTTCAAAATTT+TGG | + | chr7_3:54668455-54668474 | Msa1110070:intron | 20.0% |
!!! | AAAGTATTGGTATAAGATAT+GGG | + | chr7_3:54668503-54668522 | Msa1110070:intron | 20.0% |
!! | ACGCAAAATTAATAAAGTAT+CGG | - | chr7_3:54668536-54668555 | None:intergenic | 20.0% |
!!! | CTTTATTAATTTTGCGTATT+TGG | + | chr7_3:54668539-54668558 | Msa1110070:intron | 20.0% |
!!! | TTTTAAAACTTCTGATTTTG+CGG | - | chr7_3:54669410-54669429 | None:intergenic | 20.0% |
!!! | GCAGATGAATATTTTTAAAA+GGG | + | chr7_3:54669723-54669742 | Msa1110070:CDS | 20.0% |
!! | TAAATACCATACAAAATGTA+GGG | - | chr7_3:54670500-54670519 | None:intergenic | 20.0% |
!! | ACTAAGTTAATATAAAAGCA+GGG | - | chr7_3:54670532-54670551 | None:intergenic | 20.0% |
!! | AACTAAGTTAATATAAAAGC+AGG | - | chr7_3:54670533-54670552 | None:intergenic | 20.0% |
! | ATCTTCAAAGAACAAGATAA+TGG | + | chr7_3:54667301-54667320 | Msa1110070:CDS | 25.0% |
!! | ATAGAAGACACATTTTATGA+AGG | - | chr7_3:54667689-54667708 | None:intergenic | 25.0% |
!!! | TAGTGATTTGTTGCATTTTA+TGG | + | chr7_3:54667772-54667791 | Msa1110070:intron | 25.0% |
! | ATACATAGAGAAATGATGTT+TGG | + | chr7_3:54667942-54667961 | Msa1110070:intron | 25.0% |
!! | TGATTTTAGATGAAGAATGT+TGG | + | chr7_3:54668124-54668143 | Msa1110070:intron | 25.0% |
! | ATGAAGAATGTTGGAAAATT+TGG | + | chr7_3:54668133-54668152 | Msa1110070:intron | 25.0% |
! | TGAAGAATGTTGGAAAATTT+GGG | + | chr7_3:54668134-54668153 | Msa1110070:intron | 25.0% |
! | TATAGTTACATTGTTTGTGA+AGG | + | chr7_3:54668184-54668203 | Msa1110070:intron | 25.0% |
! | CTAACTTAACGTATATAGAA+TGG | - | chr7_3:54668220-54668239 | None:intergenic | 25.0% |
! | GAAAACAAAATCGATATGTT+TGG | - | chr7_3:54668448-54668467 | None:intergenic | 25.0% |
!! | TGATATGTATCTGAAAGTAT+TGG | + | chr7_3:54668490-54668509 | Msa1110070:intron | 25.0% |
!!! | GAAAGTATTGGTATAAGATA+TGG | + | chr7_3:54668502-54668521 | Msa1110070:intron | 25.0% |
! | TCTTATAGAAGATTCATGAA+CGG | + | chr7_3:54668586-54668605 | Msa1110070:intron | 25.0% |
! | AAGAATTAGAAAAGACCAAA+AGG | + | chr7_3:54668888-54668907 | Msa1110070:CDS | 25.0% |
!! | TCTGAAACAATATTGAATCT+CGG | + | chr7_3:54668950-54668969 | Msa1110070:CDS | 25.0% |
!!! | CGCAGATGAATATTTTTAAA+AGG | + | chr7_3:54669722-54669741 | Msa1110070:CDS | 25.0% |
!!! | GAATATTTTTAAAAGGGTAG+AGG | + | chr7_3:54669729-54669748 | Msa1110070:CDS | 25.0% |
! | TGTATGAAGTTTAAAAACTC+TGG | + | chr7_3:54669901-54669920 | Msa1110070:CDS | 25.0% |
!!! | TGATGTAAATGGATTGAATT+TGG | + | chr7_3:54669957-54669976 | Msa1110070:CDS | 25.0% |
! | CTAAATACCATACAAAATGT+AGG | - | chr7_3:54670501-54670520 | None:intergenic | 25.0% |
!! | CTACATTTTGTATGGTATTT+AGG | + | chr7_3:54670499-54670518 | Msa1110070:three_prime_UTR | 25.0% |
TGAAAAAAGAGAGATAGAAC+AGG | - | chr7_3:54667214-54667233 | None:intergenic | 30.0% | |
CAAATTCATTCACTTGAAGA+TGG | + | chr7_3:54667232-54667251 | Msa1110070:exon | 30.0% | |
!! | AAAGACACCAACTTACTTTT+AGG | - | chr7_3:54667631-54667650 | None:intergenic | 30.0% |
!! | GACTATCAAAATTTTGATGC+CGG | + | chr7_3:54667964-54667983 | Msa1110070:intron | 30.0% |
GCAAATTCGATTATACATTC+CGG | - | chr7_3:54667986-54668005 | None:intergenic | 30.0% | |
! | ATCATAAAGTATCATCGAAG+AGG | + | chr7_3:54668418-54668437 | Msa1110070:intron | 30.0% |
AAGAACTGATCCTAAAAGAA+AGG | + | chr7_3:54668846-54668865 | Msa1110070:CDS | 30.0% | |
AGAACTGATCCTAAAAGAAA+GGG | + | chr7_3:54668847-54668866 | Msa1110070:CDS | 30.0% | |
! | TTTGAAATCAAAGCTACAGA+AGG | + | chr7_3:54668922-54668941 | Msa1110070:CDS | 30.0% |
CTGAAACAATATTGAATCTC+GGG | + | chr7_3:54668951-54668970 | Msa1110070:CDS | 30.0% | |
TGTAGATGAGAAAGAAGTAA+AGG | + | chr7_3:54669000-54669019 | Msa1110070:CDS | 30.0% | |
AATTCCATTAGTATCAAGTC+TGG | - | chr7_3:54669097-54669116 | None:intergenic | 30.0% | |
!!! | AGTTTTGGTTAGGTTCAATT+TGG | - | chr7_3:54669128-54669147 | None:intergenic | 30.0% |
!!! | TATCATGAGTAGTTTTGGTT+AGG | - | chr7_3:54669138-54669157 | None:intergenic | 30.0% |
!! | AATTTTGAGTAAACCTCTCA+CGG | - | chr7_3:54669234-54669253 | None:intergenic | 30.0% |
AGTTCTGTTGTAACATCTAA+AGG | - | chr7_3:54669340-54669359 | None:intergenic | 30.0% | |
!!! | TCTCTTTTTTCTGAAATGCT+CGG | - | chr7_3:54669383-54669402 | None:intergenic | 30.0% |
ATTCGGTTACTTGATGTAAA+TGG | + | chr7_3:54669946-54669965 | Msa1110070:CDS | 30.0% | |
ATTTGTCCTATTGATAGAGT+CGG | - | chr7_3:54670012-54670031 | None:intergenic | 30.0% | |
TCTGCTAAGAGAAAGAAATT+TGG | + | chr7_3:54670204-54670223 | Msa1110070:CDS | 30.0% | |
CTGCTAAGAGAAAGAAATTT+GGG | + | chr7_3:54670205-54670224 | Msa1110070:CDS | 30.0% | |
GAAATAAAAAACAGCACCTA+GGG | - | chr7_3:54670389-54670408 | None:intergenic | 30.0% | |
TGAAATAAAAAACAGCACCT+AGG | - | chr7_3:54670390-54670409 | None:intergenic | 30.0% | |
! | TTGTTCTTTGAAGATGAACC+CGG | - | chr7_3:54667296-54667315 | None:intergenic | 35.0% |
GCTTCTTTCACAGATTCAAA+TGG | - | chr7_3:54667359-54667378 | None:intergenic | 35.0% | |
AAAGAAGCTGTTAACCTCTT+CGG | + | chr7_3:54667371-54667390 | Msa1110070:CDS | 35.0% | |
AGAGATGGAAGATTGGTAAA+GGG | - | chr7_3:54667416-54667435 | None:intergenic | 35.0% | |
TTAGAATGAGAAGTGAGAGA+TGG | - | chr7_3:54667431-54667450 | None:intergenic | 35.0% | |
ATCTCTCACTTCTCATTCTA+AGG | + | chr7_3:54667430-54667449 | Msa1110070:CDS | 35.0% | |
TTTGTTAAAAAGCCACCCTT+TGG | + | chr7_3:54667546-54667565 | Msa1110070:intron | 35.0% | |
TGATAAAAGACACCACCAAA+GGG | - | chr7_3:54667564-54667583 | None:intergenic | 35.0% | |
TTGATAAAAGACACCACCAA+AGG | - | chr7_3:54667565-54667584 | None:intergenic | 35.0% | |
ACACCTTCCTAAAAGTAAGT+TGG | + | chr7_3:54667621-54667640 | Msa1110070:intron | 35.0% | |
!! | ACACCAACTTACTTTTAGGA+AGG | - | chr7_3:54667627-54667646 | None:intergenic | 35.0% |
! | TGTTGCTATTATTGAGTGCT+AGG | + | chr7_3:54667896-54667915 | Msa1110070:intron | 35.0% |
! | GTTGCTATTATTGAGTGCTA+GGG | + | chr7_3:54667897-54667916 | Msa1110070:intron | 35.0% |
!!! | TATTGAGTGCTAGGGTTTTT+TGG | + | chr7_3:54667905-54667924 | Msa1110070:intron | 35.0% |
TGTGTGTAAATTGTCACGTA+CGG | + | chr7_3:54668070-54668089 | Msa1110070:intron | 35.0% | |
TGTTGGAAAATTTGGGAAGT+AGG | + | chr7_3:54668141-54668160 | Msa1110070:intron | 35.0% | |
ACATCTGTGACATACATACT+AGG | - | chr7_3:54668327-54668346 | None:intergenic | 35.0% | |
!! | ATGACAGTTGGTCTTAAATG+GGG | - | chr7_3:54668663-54668682 | None:intergenic | 35.0% |
!! | CATGACAGTTGGTCTTAAAT+GGG | - | chr7_3:54668664-54668683 | None:intergenic | 35.0% |
!! | TCATGACAGTTGGTCTTAAA+TGG | - | chr7_3:54668665-54668684 | None:intergenic | 35.0% |
! | CAAGAGTTTCCCTTTCTTTT+AGG | - | chr7_3:54668859-54668878 | None:intergenic | 35.0% |
! | CAAATCTTCAACAAGCCTTT+TGG | - | chr7_3:54668906-54668925 | None:intergenic | 35.0% |
TTCTCCAGACTTGATACTAA+TGG | + | chr7_3:54669090-54669109 | Msa1110070:CDS | 35.0% | |
GATACTAATGGAATTGAAGC+AGG | + | chr7_3:54669102-54669121 | Msa1110070:CDS | 35.0% | |
! | GGCAATATCATGAGTAGTTT+TGG | - | chr7_3:54669143-54669162 | None:intergenic | 35.0% |
!! | ATTTTGAGTAAACCTCTCAC+GGG | - | chr7_3:54669233-54669252 | None:intergenic | 35.0% |
CAATGCGTTAATTTCTGCAA+GGG | - | chr7_3:54669539-54669558 | None:intergenic | 35.0% | |
ACAATGCGTTAATTTCTGCA+AGG | - | chr7_3:54669540-54669559 | None:intergenic | 35.0% | |
ATATCTCTCCTATGATCAGA+TGG | - | chr7_3:54669928-54669947 | None:intergenic | 35.0% | |
CTGATCATAGGAGAGATATT+CGG | + | chr7_3:54669929-54669948 | Msa1110070:CDS | 35.0% | |
! | TTAAAGCCGACTCTATCAAT+AGG | + | chr7_3:54670003-54670022 | Msa1110070:CDS | 35.0% |
GAGCAAACTGAGAAAGAAAA+TGG | + | chr7_3:54670165-54670184 | Msa1110070:CDS | 35.0% | |
! | GTCATTCCCTACATTTTGTA+TGG | + | chr7_3:54670491-54670510 | Msa1110070:three_prime_UTR | 35.0% |
GAGAGATGGAAGATTGGTAA+AGG | - | chr7_3:54667417-54667436 | None:intergenic | 40.0% | |
AGAAGTGAGAGATGGAAGAT+TGG | - | chr7_3:54667423-54667442 | None:intergenic | 40.0% | |
!! | TGACAGTTGGTCTTAAATGG+GGG | - | chr7_3:54668662-54668681 | None:intergenic | 40.0% |
GACCAACTGTCATGAAAATC+TGG | + | chr7_3:54668670-54668689 | Msa1110070:intron | 40.0% | |
! | TGCCAGATTTTCATGACAGT+TGG | - | chr7_3:54668675-54668694 | None:intergenic | 40.0% |
GGCATAGAACATTCCTTCAT+GGG | - | chr7_3:54669058-54669077 | None:intergenic | 40.0% | |
AGGCATAGAACATTCCTTCA+TGG | - | chr7_3:54669059-54669078 | None:intergenic | 40.0% | |
CAAGTCTGGAGAAGATACAT+GGG | - | chr7_3:54669083-54669102 | None:intergenic | 40.0% | |
TCAAGTCTGGAGAAGATACA+TGG | - | chr7_3:54669084-54669103 | None:intergenic | 40.0% | |
TTCAACAGTAGCTCGTACAT+CGG | - | chr7_3:54669164-54669183 | None:intergenic | 40.0% | |
CTTGCAGTCTTAATCTGGTT+TGG | - | chr7_3:54669291-54669310 | None:intergenic | 40.0% | |
AACCAGATTAAGACTGCAAG+TGG | + | chr7_3:54669291-54669310 | Msa1110070:CDS | 40.0% | |
TTAAGACTGCAAGTGGCAAA+AGG | + | chr7_3:54669298-54669317 | Msa1110070:CDS | 40.0% | |
TGATAAGAACTGCCGAAATC+AGG | + | chr7_3:54669461-54669480 | Msa1110070:CDS | 40.0% | |
AGAAGTTCAAACCTGCAAGA+AGG | + | chr7_3:54669762-54669781 | Msa1110070:CDS | 40.0% | |
CCTTTGTAGAGCTTCTTCAA+GGG | - | chr7_3:54669788-54669807 | None:intergenic | 40.0% | |
CCTTGAAGAAGCTCTACAAA+GGG | + | chr7_3:54669786-54669805 | Msa1110070:CDS | 40.0% | |
TGGAAGTTGAAGAGGCTTTA+AGG | + | chr7_3:54669833-54669852 | Msa1110070:CDS | 40.0% | |
!! | TTGAAGAGGCTTTAAGGAAG+TGG | + | chr7_3:54669839-54669858 | Msa1110070:CDS | 40.0% |
!! | GATAGAGTCGGCTTTAAAAC+AGG | - | chr7_3:54670000-54670019 | None:intergenic | 40.0% |
CAATAGGACAAATACTGAGC+AGG | + | chr7_3:54670019-54670038 | Msa1110070:CDS | 40.0% | |
! | ATCGGTTCTTCAAACTCTTC+TGG | - | chr7_3:54670057-54670076 | None:intergenic | 40.0% |
AGAAGAGTTTGAAGAACCGA+TGG | + | chr7_3:54670056-54670075 | Msa1110070:CDS | 40.0% | |
! | ACTATTTCTCCATGCACCAT+CGG | - | chr7_3:54670075-54670094 | None:intergenic | 40.0% |
!! | AAACAGCAGAAGGTGTCATT+AGG | + | chr7_3:54670102-54670121 | Msa1110070:CDS | 40.0% |
! | GTGTCATTAGGTCATATGCT+TGG | + | chr7_3:54670114-54670133 | Msa1110070:CDS | 40.0% |
! | TCAGTTTGCTCGTCAAACAA+TGG | - | chr7_3:54670156-54670175 | None:intergenic | 40.0% |
AGAAACCAATGCTGAACTTG+AGG | + | chr7_3:54670274-54670293 | Msa1110070:CDS | 40.0% | |
ATTCACCTCAAGTTCAGCAT+TGG | - | chr7_3:54670282-54670301 | None:intergenic | 40.0% | |
TAGCTCTTGTCATTGCTAGA+TGG | - | chr7_3:54670327-54670346 | None:intergenic | 40.0% | |
CAAAAGTAGCGTCTCCTATT+AGG | + | chr7_3:54670351-54670370 | Msa1110070:three_prime_UTR | 40.0% | |
! | TGTGTCGTGTTGGAGTGTTT+GGG | - | chr7_3:54667160-54667179 | None:intergenic | 45.0% |
! | TTGTGTCGTGTTGGAGTGTT+TGG | - | chr7_3:54667161-54667180 | None:intergenic | 45.0% |
GTGAAGATGTTGTGTCGTGT+TGG | - | chr7_3:54667170-54667189 | None:intergenic | 45.0% | |
GTTAAAAAGCCACCCTTTGG+TGG | + | chr7_3:54667549-54667568 | Msa1110070:intron | 45.0% | |
TAAAAGACACCACCAAAGGG+TGG | - | chr7_3:54667561-54667580 | None:intergenic | 45.0% | |
! | AGGACAATGTAGCTCTGTGA+TGG | - | chr7_3:54668633-54668652 | None:intergenic | 45.0% |
! | GTCTTAAATGGGGGTGTAGA+AGG | - | chr7_3:54668653-54668672 | None:intergenic | 45.0% |
!! | TGGTGCTGCAAACAAACAAG+AGG | - | chr7_3:54668773-54668792 | None:intergenic | 45.0% |
ACCACATAGAAGAGCTTGAC+AGG | + | chr7_3:54668789-54668808 | Msa1110070:CDS | 45.0% | |
CCACATAGAAGAGCTTGACA+GGG | + | chr7_3:54668790-54668809 | Msa1110070:CDS | 45.0% | |
! | ATGGGTTGAAGAACCTCAGA+CGG | - | chr7_3:54669040-54669059 | None:intergenic | 45.0% |
TGAGGTTCTTCAACCCATGA+AGG | + | chr7_3:54669042-54669061 | Msa1110070:CDS | 45.0% | |
TCTGGAGAAGATACATGGGA+AGG | - | chr7_3:54669079-54669098 | None:intergenic | 45.0% | |
! | TGCCACTTGCAGTCTTAATC+TGG | - | chr7_3:54669296-54669315 | None:intergenic | 45.0% |
! | ACTCCATCGATTGAGTTCAG+AGG | + | chr7_3:54669357-54669376 | Msa1110070:CDS | 45.0% |
AAGAACTGCCGAAATCAGGT+TGG | + | chr7_3:54669465-54669484 | Msa1110070:CDS | 45.0% | |
TAACGCATTGTCTAGCCATG+AGG | + | chr7_3:54669549-54669568 | Msa1110070:CDS | 45.0% | |
AACGCATTGTCTAGCCATGA+GGG | + | chr7_3:54669550-54669569 | Msa1110070:CDS | 45.0% | |
TCGTAAAGCTCAAGAAGCAG+AGG | + | chr7_3:54669642-54669661 | Msa1110070:CDS | 45.0% | |
CCCTTGAAGAAGCTCTACAA+AGG | + | chr7_3:54669785-54669804 | Msa1110070:CDS | 45.0% | |
CCCTTTGTAGAGCTTCTTCA+AGG | - | chr7_3:54669789-54669808 | None:intergenic | 45.0% | |
AGAAGCTCTACAAAGGGTAG+AGG | + | chr7_3:54669792-54669811 | Msa1110070:CDS | 45.0% | |
AGGGAAGTTGGAAGTTGAAG+AGG | + | chr7_3:54669825-54669844 | Msa1110070:CDS | 45.0% | |
TTAAGGAAGTGGCGATCTGA+CGG | + | chr7_3:54669850-54669869 | Msa1110070:CDS | 45.0% | |
ACTCTGGTCCATCTGATCAT+AGG | + | chr7_3:54669917-54669936 | Msa1110070:CDS | 45.0% | |
!! | AGTCGGCTTTAAAACAGGCT+TGG | - | chr7_3:54669995-54670014 | None:intergenic | 45.0% |
TTTGAAGAACCGATGGTGCA+TGG | + | chr7_3:54670063-54670082 | Msa1110070:CDS | 45.0% | |
GGTGCATGGAGAAATAGTCT+CGG | + | chr7_3:54670077-54670096 | Msa1110070:CDS | 45.0% | |
GACGACGTATCAAGCTGAAC+CGG | + | chr7_3:54667274-54667293 | Msa1110070:CDS | 50.0% | |
ACGACGTATCAAGCTGAACC+GGG | + | chr7_3:54667275-54667294 | Msa1110070:CDS | 50.0% | |
GAAGCTGTTAACCTCTTCGG+TGG | + | chr7_3:54667374-54667393 | Msa1110070:CDS | 50.0% | |
GTTAACCTCTTCGGTGGTGT+TGG | + | chr7_3:54667380-54667399 | Msa1110070:CDS | 50.0% | |
AGTAACCAACACCACCGAAG+AGG | - | chr7_3:54667388-54667407 | None:intergenic | 50.0% | |
!! | TCTTCGGTGGTGTTGGTTAC+TGG | + | chr7_3:54667387-54667406 | Msa1110070:CDS | 50.0% |
CCCTGTCAAGCTCTTCTATG+TGG | - | chr7_3:54668793-54668812 | None:intergenic | 50.0% | |
GCTTGACAGGGAGAAACTAG+AGG | + | chr7_3:54668802-54668821 | Msa1110070:CDS | 50.0% | |
AAACCAATCGAGTCCGTCTG+AGG | + | chr7_3:54669024-54669043 | Msa1110070:CDS | 50.0% | |
CACTTGAGAAAACCCGTGAG+AGG | + | chr7_3:54669218-54669237 | Msa1110070:CDS | 50.0% | |
!! | TGCCGAAATCAGGTTGGTTG+CGG | + | chr7_3:54669471-54669490 | Msa1110070:CDS | 50.0% |
TGCCGCAACCAACCTGATTT+CGG | - | chr7_3:54669476-54669495 | None:intergenic | 50.0% | |
!! | AAATCAGGTTGGTTGCGGCA+AGG | + | chr7_3:54669476-54669495 | Msa1110070:CDS | 50.0% |
GGTTGCGGCAAGGAAAATGA+AGG | + | chr7_3:54669486-54669505 | Msa1110070:CDS | 50.0% | |
TTCTTCAAGGGCCTTCTTGC+AGG | - | chr7_3:54669776-54669795 | None:intergenic | 50.0% | |
GGCGATCTGACGGTCAAAAA+AGG | + | chr7_3:54669860-54669879 | Msa1110070:CDS | 50.0% | |
AGTCTCGGTGAAACAGCAGA+AGG | + | chr7_3:54670092-54670111 | Msa1110070:CDS | 50.0% | |
GGAATGTGCTGAGGCCTAAT+AGG | - | chr7_3:54670368-54670387 | None:intergenic | 50.0% | |
CAGGGAGAAACTAGAGGAGC+AGG | + | chr7_3:54668808-54668827 | Msa1110070:CDS | 55.0% | |
! | GAACCTCAGACGGACTCGAT+TGG | - | chr7_3:54669030-54669049 | None:intergenic | 55.0% |
!! | GTGGCAAAAGGTGCTGCTTC+TGG | + | chr7_3:54669310-54669329 | Msa1110070:CDS | 55.0% |
CGGCCTCTGAACTCAATCGA+TGG | - | chr7_3:54669363-54669382 | None:intergenic | 55.0% | |
ACTCGTCTGGTGTACCCTCA+TGG | - | chr7_3:54669567-54669586 | None:intergenic | 55.0% | |
CGCTTCTGCATACACTCGTC+TGG | - | chr7_3:54669580-54669599 | None:intergenic | 55.0% | |
AGGGTAGAGGCTGCAGATAG+AGG | + | chr7_3:54669805-54669824 | Msa1110070:CDS | 55.0% | |
GGGTAGAGGCTGCAGATAGA+GGG | + | chr7_3:54669806-54669825 | Msa1110070:CDS | 55.0% | |
GGCTGCAGATAGAGGGAAGT+TGG | + | chr7_3:54669813-54669832 | Msa1110070:CDS | 55.0% | |
TAGGCCTCAGCACATTCCCT+AGG | + | chr7_3:54670370-54670389 | Msa1110070:three_prime_UTR | 55.0% | |
AGCACCTAGGGAATGTGCTG+AGG | - | chr7_3:54670377-54670396 | None:intergenic | 55.0% | |
! | AGAGGAGCAGGCAAGAGCGT+TGG | + | chr7_3:54668820-54668839 | Msa1110070:CDS | 60.0% |
! | CGAGTGTATGCAGAAGCGCG+AGG | + | chr7_3:54669582-54669601 | Msa1110070:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 54667149 | 54670569 | 54667149 | ID=Msa1110070;Name=Msa1110070 |
chr7_3 | mRNA | 54667149 | 54670569 | 54667149 | ID=Msa1110070-mRNA-1;Parent=Msa1110070;Name=Msa1110070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=102|1|1|1|1|1|2|270|570 |
chr7_3 | exon | 54667149 | 54667451 | 54667149 | ID=Msa1110070-mRNA-1:exon:11490;Parent=Msa1110070-mRNA-1 |
chr7_3 | exon | 54668788 | 54670569 | 54668788 | ID=Msa1110070-mRNA-1:exon:11491;Parent=Msa1110070-mRNA-1 |
chr7_3 | five_prime_UTR | 54667149 | 54667250 | 54667149 | ID=Msa1110070-mRNA-1:five_prime_utr;Parent=Msa1110070-mRNA-1 |
chr7_3 | CDS | 54667251 | 54667451 | 54667251 | ID=Msa1110070-mRNA-1:cds;Parent=Msa1110070-mRNA-1 |
chr7_3 | CDS | 54668788 | 54670299 | 54668788 | ID=Msa1110070-mRNA-1:cds;Parent=Msa1110070-mRNA-1 |
chr7_3 | three_prime_UTR | 54670300 | 54670569 | 54670300 | ID=Msa1110070-mRNA-1:three_prime_utr;Parent=Msa1110070-mRNA-1 |
Gene Sequence |
Protein sequence |