AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1110070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110070 MtrunA17_Chr7g0244501 96.147 571 20 2 1 570 1 570 0.0 1100
Msa1110070 MtrunA17_Chr4g0013151 64.195 553 160 12 12 552 76 602 0.0 588
Msa1110070 MtrunA17_Chr3g0114551 35.788 584 305 10 26 552 21 591 1.65e-75 251
Msa1110070 MtrunA17_Chr5g0438111 36.364 561 280 14 26 562 27 534 1.64e-70 236
Msa1110070 MtrunA17_Chr3g0133891 31.408 277 186 2 176 448 595 871 3.85e-26 113
Msa1110070 MtrunA17_Chr1g0153431 30.072 276 165 5 176 434 576 840 9.26e-20 93.6
Msa1110070 MtrunA17_Chr8g0369191 27.925 265 184 2 176 433 285 549 5.51e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110070 AT2G38370.1 42.294 558 247 14 14 555 6 504 6.15e-109 336
Msa1110070 AT2G38370.2 42.294 558 247 14 14 555 23 521 6.50e-109 337
Msa1110070 AT2G40480.1 36.531 542 259 15 26 562 54 515 1.86e-65 222
Msa1110070 AT3G51720.1 36.007 536 182 19 26 555 8 388 3.00e-58 200
Msa1110070 AT3G56270.1 34.052 464 218 15 27 486 41 420 1.53e-38 147
Msa1110070 AT2G26570.1 32.414 290 184 4 166 444 452 740 1.33e-26 115
Msa1110070 AT2G26570.1 40.496 121 52 3 11 123 145 253 1.85e-13 73.9
Msa1110070 AT2G26570.2 32.414 290 184 4 166 444 452 740 1.33e-26 115
Msa1110070 AT2G26570.2 40.496 121 52 3 11 123 145 253 1.85e-13 73.9
Msa1110070 AT5G42880.1 33.203 256 157 4 193 434 413 668 4.46e-19 91.7
Msa1110070 AT4G33390.1 32.210 267 177 2 176 438 460 726 2.19e-18 89.7
Msa1110070 AT4G33390.1 41.000 100 55 1 24 123 149 244 4.00e-12 69.7
Msa1110070 AT1G45545.2 28.185 259 161 2 176 432 444 679 1.76e-15 80.5
Msa1110070 AT1G45545.1 28.185 259 161 2 176 432 443 678 1.79e-15 80.5

Find 116 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGTTGAAGAGGCTTTA+AGG 0.157861 7_3:+54669833 Msa1110070:CDS
ATTCGGTTACTTGATGTAAA+TGG 0.201330 7_3:+54669946 Msa1110070:CDS
TTCTTCAAGGGCCTTCTTGC+AGG 0.218507 7_3:-54669773 None:intergenic
TCTTCGGTGGTGTTGGTTAC+TGG 0.225889 7_3:+54667387 Msa1110070:CDS
ATCTCTCACTTCTCATTCTA+AGG 0.237177 7_3:+54667430 Msa1110070:CDS
TGATGTAAATGGATTGAATT+TGG 0.242394 7_3:+54669957 Msa1110070:CDS
CAAATCTTCAACAAGCCTTT+TGG 0.268546 7_3:-54668903 None:intergenic
GGCAATATCATGAGTAGTTT+TGG 0.272866 7_3:-54669140 None:intergenic
TCTGCTAAGAGAAAGAAATT+TGG 0.281302 7_3:+54670204 Msa1110070:CDS
TTGTGTCGTGTTGGAGTGTT+TGG 0.292270 7_3:-54667158 None:intergenic
TGCCACTTGCAGTCTTAATC+TGG 0.293211 7_3:-54669293 None:intergenic
CTGCTAAGAGAAAGAAATTT+GGG 0.308164 7_3:+54670205 Msa1110070:CDS
CAAAAGTAGCGTCTCCTATT+AGG 0.313248 7_3:+54670351 Msa1110070:three_prime_UTR
TGCCGCAACCAACCTGATTT+CGG 0.328768 7_3:-54669473 None:intergenic
CTTGCAGTCTTAATCTGGTT+TGG 0.345195 7_3:-54669288 None:intergenic
GGAATGTGCTGAGGCCTAAT+AGG 0.345830 7_3:-54670365 None:intergenic
CCCTTTGTAGAGCTTCTTCA+AGG 0.349108 7_3:-54669786 None:intergenic
GTGGCAAAAGGTGCTGCTTC+TGG 0.361274 7_3:+54669310 Msa1110070:CDS
TTCTCCAGACTTGATACTAA+TGG 0.384913 7_3:+54669090 Msa1110070:CDS
GAGCAAACTGAGAAAGAAAA+TGG 0.397534 7_3:+54670165 Msa1110070:CDS
GATAGAGTCGGCTTTAAAAC+AGG 0.402456 7_3:-54669997 None:intergenic
ACCACATAGAAGAGCTTGAC+AGG 0.409010 7_3:+54668789 Msa1110070:CDS
ATCGGTTCTTCAAACTCTTC+TGG 0.412083 7_3:-54670054 None:intergenic
TGATAAGAACTGCCGAAATC+AGG 0.412600 7_3:+54669461 Msa1110070:CDS
AGAGATGGAAGATTGGTAAA+GGG 0.415316 7_3:-54667413 None:intergenic
GGCTGCAGATAGAGGGAAGT+TGG 0.415532 7_3:+54669813 Msa1110070:CDS
TTAAAGCCGACTCTATCAAT+AGG 0.421757 7_3:+54670003 Msa1110070:CDS
ACTCTGGTCCATCTGATCAT+AGG 0.422249 7_3:+54669917 Msa1110070:CDS
CAAATTCATTCACTTGAAGA+TGG 0.426934 7_3:+54667232 Msa1110070:exon
CTGAAACAATATTGAATCTC+GGG 0.430024 7_3:+54668951 Msa1110070:CDS
AATTCCATTAGTATCAAGTC+TGG 0.436262 7_3:-54669094 None:intergenic
AGAAGTGAGAGATGGAAGAT+TGG 0.437847 7_3:-54667420 None:intergenic
GACGACGTATCAAGCTGAAC+CGG 0.439494 7_3:+54667274 Msa1110070:CDS
ATCTTCAAAGAACAAGATAA+TGG 0.450459 7_3:+54667301 Msa1110070:CDS
AAACAGCAGAAGGTGTCATT+AGG 0.452154 7_3:+54670102 Msa1110070:CDS
AAGAACTGATCCTAAAAGAA+AGG 0.454762 7_3:+54668846 Msa1110070:CDS
TAGCTCTTGTCATTGCTAGA+TGG 0.456272 7_3:-54670324 None:intergenic
GAGAGATGGAAGATTGGTAA+AGG 0.460116 7_3:-54667414 None:intergenic
AGGGAAGTTGGAAGTTGAAG+AGG 0.467502 7_3:+54669825 Msa1110070:CDS
GCTTCTTTCACAGATTCAAA+TGG 0.467986 7_3:-54667356 None:intergenic
AACTAAGTTAATATAAAAGC+AGG 0.469656 7_3:-54670530 None:intergenic
AGGCATAGAACATTCCTTCA+TGG 0.469854 7_3:-54669056 None:intergenic
AAAGAAGCTGTTAACCTCTT+CGG 0.478043 7_3:+54667371 Msa1110070:CDS
TCTGAAACAATATTGAATCT+CGG 0.479141 7_3:+54668950 Msa1110070:CDS
TGTAGATGAGAAAGAAGTAA+AGG 0.480056 7_3:+54669000 Msa1110070:CDS
CTAAATACCATACAAAATGT+AGG 0.483597 7_3:-54670498 None:intergenic
CGCTTCTGCATACACTCGTC+TGG 0.489501 7_3:-54669577 None:intergenic
AAGAATTAGAAAAGACCAAA+AGG 0.492625 7_3:+54668888 Msa1110070:CDS
CTGATCATAGGAGAGATATT+CGG 0.493121 7_3:+54669929 Msa1110070:CDS
TGCCGAAATCAGGTTGGTTG+CGG 0.495008 7_3:+54669471 Msa1110070:CDS
CAGGGAGAAACTAGAGGAGC+AGG 0.495153 7_3:+54668808 Msa1110070:CDS
GTTAACCTCTTCGGTGGTGT+TGG 0.495906 7_3:+54667380 Msa1110070:CDS
TTGAAGAGGCTTTAAGGAAG+TGG 0.497849 7_3:+54669839 Msa1110070:CDS
AGTCGGCTTTAAAACAGGCT+TGG 0.498226 7_3:-54669992 None:intergenic
AGTTCTGTTGTAACATCTAA+AGG 0.502149 7_3:-54669337 None:intergenic
AGGGTAGAGGCTGCAGATAG+AGG 0.502926 7_3:+54669805 Msa1110070:CDS
ATTCACCTCAAGTTCAGCAT+TGG 0.508102 7_3:-54670279 None:intergenic
AGAACTGATCCTAAAAGAAA+GGG 0.516905 7_3:+54668847 Msa1110070:CDS
GGGTAGAGGCTGCAGATAGA+GGG 0.517190 7_3:+54669806 Msa1110070:CDS
AGAGGAGCAGGCAAGAGCGT+TGG 0.517338 7_3:+54668820 Msa1110070:CDS
CCCTGTCAAGCTCTTCTATG+TGG 0.518116 7_3:-54668790 None:intergenic
CAATAGGACAAATACTGAGC+AGG 0.522093 7_3:+54670019 Msa1110070:CDS
GGCATAGAACATTCCTTCAT+GGG 0.522442 7_3:-54669055 None:intergenic
GATACTAATGGAATTGAAGC+AGG 0.525759 7_3:+54669102 Msa1110070:CDS
TTAAGACTGCAAGTGGCAAA+AGG 0.531244 7_3:+54669298 Msa1110070:CDS
TGTGTCGTGTTGGAGTGTTT+GGG 0.531540 7_3:-54667157 None:intergenic
TCAAGTCTGGAGAAGATACA+TGG 0.533490 7_3:-54669081 None:intergenic
TAAATACCATACAAAATGTA+GGG 0.543938 7_3:-54670497 None:intergenic
TCAGTTTGCTCGTCAAACAA+TGG 0.549642 7_3:-54670153 None:intergenic
ATTTGTCCTATTGATAGAGT+CGG 0.552627 7_3:-54670009 None:intergenic
CGGCCTCTGAACTCAATCGA+TGG 0.552819 7_3:-54669360 None:intergenic
CCTTTGTAGAGCTTCTTCAA+GGG 0.554451 7_3:-54669785 None:intergenic
GAACCTCAGACGGACTCGAT+TGG 0.556300 7_3:-54669027 None:intergenic
TTTGAAGAACCGATGGTGCA+TGG 0.559513 7_3:+54670063 Msa1110070:CDS
AACCAGATTAAGACTGCAAG+TGG 0.562004 7_3:+54669291 Msa1110070:CDS
TGAGGTTCTTCAACCCATGA+AGG 0.563383 7_3:+54669042 Msa1110070:CDS
ATATCTCTCCTATGATCAGA+TGG 0.563474 7_3:-54669925 None:intergenic
TTGTTCTTTGAAGATGAACC+CGG 0.563644 7_3:-54667293 None:intergenic
ACTCGTCTGGTGTACCCTCA+TGG 0.568839 7_3:-54669564 None:intergenic
CAATGCGTTAATTTCTGCAA+GGG 0.572501 7_3:-54669536 None:intergenic
TTAGAATGAGAAGTGAGAGA+TGG 0.574843 7_3:-54667428 None:intergenic
TTCAACAGTAGCTCGTACAT+CGG 0.575007 7_3:-54669161 None:intergenic
TTAAGGAAGTGGCGATCTGA+CGG 0.579749 7_3:+54669850 Msa1110070:CDS
AGAAGTTCAAACCTGCAAGA+AGG 0.580057 7_3:+54669762 Msa1110070:CDS
CCTTGAAGAAGCTCTACAAA+GGG 0.582325 7_3:+54669786 Msa1110070:CDS
GTGAAGATGTTGTGTCGTGT+TGG 0.585533 7_3:-54667167 None:intergenic
TAGGCCTCAGCACATTCCCT+AGG 0.586745 7_3:+54670370 Msa1110070:three_prime_UTR
TTTGAAATCAAAGCTACAGA+AGG 0.588441 7_3:+54668922 Msa1110070:CDS
GTGTCATTAGGTCATATGCT+TGG 0.589947 7_3:+54670114 Msa1110070:CDS
CCCTTGAAGAAGCTCTACAA+AGG 0.590773 7_3:+54669785 Msa1110070:CDS
ATGGGTTGAAGAACCTCAGA+CGG 0.594605 7_3:-54669037 None:intergenic
ACAATGCGTTAATTTCTGCA+AGG 0.601615 7_3:-54669537 None:intergenic
AGAAACCAATGCTGAACTTG+AGG 0.604096 7_3:+54670274 Msa1110070:CDS
AGAAGCTCTACAAAGGGTAG+AGG 0.607835 7_3:+54669792 Msa1110070:CDS
ACTATTTCTCCATGCACCAT+CGG 0.609425 7_3:-54670072 None:intergenic
ACGACGTATCAAGCTGAACC+GGG 0.613614 7_3:+54667275 Msa1110070:CDS
GGTTGCGGCAAGGAAAATGA+AGG 0.614865 7_3:+54669486 Msa1110070:CDS
AAACCAATCGAGTCCGTCTG+AGG 0.623782 7_3:+54669024 Msa1110070:CDS
AACGCATTGTCTAGCCATGA+GGG 0.624553 7_3:+54669550 Msa1110070:CDS
TAACGCATTGTCTAGCCATG+AGG 0.637064 7_3:+54669549 Msa1110070:CDS
AGAAGAGTTTGAAGAACCGA+TGG 0.638252 7_3:+54670056 Msa1110070:CDS
AAATCAGGTTGGTTGCGGCA+AGG 0.638872 7_3:+54669476 Msa1110070:CDS
ACTAAGTTAATATAAAAGCA+GGG 0.639970 7_3:-54670529 None:intergenic
TCGTAAAGCTCAAGAAGCAG+AGG 0.644575 7_3:+54669642 Msa1110070:CDS
AGCACCTAGGGAATGTGCTG+AGG 0.644735 7_3:-54670374 None:intergenic
GAAGCTGTTAACCTCTTCGG+TGG 0.645746 7_3:+54667374 Msa1110070:CDS
AAGAACTGCCGAAATCAGGT+TGG 0.651437 7_3:+54669465 Msa1110070:CDS
AGTAACCAACACCACCGAAG+AGG 0.655481 7_3:-54667385 None:intergenic
CACTTGAGAAAACCCGTGAG+AGG 0.664946 7_3:+54669218 Msa1110070:CDS
TCTGGAGAAGATACATGGGA+AGG 0.668166 7_3:-54669076 None:intergenic
GGTGCATGGAGAAATAGTCT+CGG 0.669815 7_3:+54670077 Msa1110070:CDS
ACTCCATCGATTGAGTTCAG+AGG 0.670068 7_3:+54669357 Msa1110070:CDS
CAAGTCTGGAGAAGATACAT+GGG 0.676113 7_3:-54669080 None:intergenic
GCTTGACAGGGAGAAACTAG+AGG 0.676961 7_3:+54668802 Msa1110070:CDS
CCACATAGAAGAGCTTGACA+GGG 0.677555 7_3:+54668790 Msa1110070:CDS
AGTCTCGGTGAAACAGCAGA+AGG 0.690368 7_3:+54670092 Msa1110070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATTTATATA+TGG + chr7_3:54667522-54667541 Msa1110070:intron 0.0%
!! ATATATATATATATATATAT+AGG - chr7_3:54667507-54667526 None:intergenic 0.0%
!!! GTTTTTTTTTTTTTTTTTAC+TGG + chr7_3:54667826-54667845 Msa1110070:intron 10.0%
!!! AATCTAATTTTTGATATATA+TGG - chr7_3:54668299-54668318 None:intergenic 10.0%
!!! AATTGACATTTTTTCATTTT+GGG - chr7_3:54668359-54668378 None:intergenic 15.0%
!!! GATTTTGTTTTCAAAATTTT+GGG + chr7_3:54668456-54668475 Msa1110070:intron 15.0%
!!! ATTTTGTTTTCAAAATTTTG+GGG + chr7_3:54668457-54668476 Msa1110070:intron 15.0%
!!! TTTATTAATTTTGCGTATTT+GGG + chr7_3:54668540-54668559 Msa1110070:intron 15.0%
!! TTTAGTTATAACTTTGCTAA+AGG + chr7_3:54667598-54667617 Msa1110070:intron 20.0%
!! AAACTATTTATGTGACTAAT+AGG + chr7_3:54667804-54667823 Msa1110070:intron 20.0%
!!! TGTAATTTTGATGTCAAATA+TGG + chr7_3:54668033-54668052 Msa1110070:intron 20.0%
!! AAACAATGTAACTATAAATG+AGG - chr7_3:54668180-54668199 None:intergenic 20.0%
!!! GAATTGACATTTTTTCATTT+TGG - chr7_3:54668360-54668379 None:intergenic 20.0%
!!! CGATTTTGTTTTCAAAATTT+TGG + chr7_3:54668455-54668474 Msa1110070:intron 20.0%
!!! AAAGTATTGGTATAAGATAT+GGG + chr7_3:54668503-54668522 Msa1110070:intron 20.0%
!! ACGCAAAATTAATAAAGTAT+CGG - chr7_3:54668536-54668555 None:intergenic 20.0%
!!! CTTTATTAATTTTGCGTATT+TGG + chr7_3:54668539-54668558 Msa1110070:intron 20.0%
!!! TTTTAAAACTTCTGATTTTG+CGG - chr7_3:54669410-54669429 None:intergenic 20.0%
!!! GCAGATGAATATTTTTAAAA+GGG + chr7_3:54669723-54669742 Msa1110070:CDS 20.0%
!! TAAATACCATACAAAATGTA+GGG - chr7_3:54670500-54670519 None:intergenic 20.0%
!! ACTAAGTTAATATAAAAGCA+GGG - chr7_3:54670532-54670551 None:intergenic 20.0%
!! AACTAAGTTAATATAAAAGC+AGG - chr7_3:54670533-54670552 None:intergenic 20.0%
! ATCTTCAAAGAACAAGATAA+TGG + chr7_3:54667301-54667320 Msa1110070:CDS 25.0%
!! ATAGAAGACACATTTTATGA+AGG - chr7_3:54667689-54667708 None:intergenic 25.0%
!!! TAGTGATTTGTTGCATTTTA+TGG + chr7_3:54667772-54667791 Msa1110070:intron 25.0%
! ATACATAGAGAAATGATGTT+TGG + chr7_3:54667942-54667961 Msa1110070:intron 25.0%
!! TGATTTTAGATGAAGAATGT+TGG + chr7_3:54668124-54668143 Msa1110070:intron 25.0%
! ATGAAGAATGTTGGAAAATT+TGG + chr7_3:54668133-54668152 Msa1110070:intron 25.0%
! TGAAGAATGTTGGAAAATTT+GGG + chr7_3:54668134-54668153 Msa1110070:intron 25.0%
! TATAGTTACATTGTTTGTGA+AGG + chr7_3:54668184-54668203 Msa1110070:intron 25.0%
! CTAACTTAACGTATATAGAA+TGG - chr7_3:54668220-54668239 None:intergenic 25.0%
! GAAAACAAAATCGATATGTT+TGG - chr7_3:54668448-54668467 None:intergenic 25.0%
!! TGATATGTATCTGAAAGTAT+TGG + chr7_3:54668490-54668509 Msa1110070:intron 25.0%
!!! GAAAGTATTGGTATAAGATA+TGG + chr7_3:54668502-54668521 Msa1110070:intron 25.0%
! TCTTATAGAAGATTCATGAA+CGG + chr7_3:54668586-54668605 Msa1110070:intron 25.0%
! AAGAATTAGAAAAGACCAAA+AGG + chr7_3:54668888-54668907 Msa1110070:CDS 25.0%
!! TCTGAAACAATATTGAATCT+CGG + chr7_3:54668950-54668969 Msa1110070:CDS 25.0%
!!! CGCAGATGAATATTTTTAAA+AGG + chr7_3:54669722-54669741 Msa1110070:CDS 25.0%
!!! GAATATTTTTAAAAGGGTAG+AGG + chr7_3:54669729-54669748 Msa1110070:CDS 25.0%
! TGTATGAAGTTTAAAAACTC+TGG + chr7_3:54669901-54669920 Msa1110070:CDS 25.0%
!!! TGATGTAAATGGATTGAATT+TGG + chr7_3:54669957-54669976 Msa1110070:CDS 25.0%
! CTAAATACCATACAAAATGT+AGG - chr7_3:54670501-54670520 None:intergenic 25.0%
!! CTACATTTTGTATGGTATTT+AGG + chr7_3:54670499-54670518 Msa1110070:three_prime_UTR 25.0%
TGAAAAAAGAGAGATAGAAC+AGG - chr7_3:54667214-54667233 None:intergenic 30.0%
CAAATTCATTCACTTGAAGA+TGG + chr7_3:54667232-54667251 Msa1110070:exon 30.0%
!! AAAGACACCAACTTACTTTT+AGG - chr7_3:54667631-54667650 None:intergenic 30.0%
!! GACTATCAAAATTTTGATGC+CGG + chr7_3:54667964-54667983 Msa1110070:intron 30.0%
GCAAATTCGATTATACATTC+CGG - chr7_3:54667986-54668005 None:intergenic 30.0%
! ATCATAAAGTATCATCGAAG+AGG + chr7_3:54668418-54668437 Msa1110070:intron 30.0%
AAGAACTGATCCTAAAAGAA+AGG + chr7_3:54668846-54668865 Msa1110070:CDS 30.0%
AGAACTGATCCTAAAAGAAA+GGG + chr7_3:54668847-54668866 Msa1110070:CDS 30.0%
! TTTGAAATCAAAGCTACAGA+AGG + chr7_3:54668922-54668941 Msa1110070:CDS 30.0%
CTGAAACAATATTGAATCTC+GGG + chr7_3:54668951-54668970 Msa1110070:CDS 30.0%
TGTAGATGAGAAAGAAGTAA+AGG + chr7_3:54669000-54669019 Msa1110070:CDS 30.0%
AATTCCATTAGTATCAAGTC+TGG - chr7_3:54669097-54669116 None:intergenic 30.0%
!!! AGTTTTGGTTAGGTTCAATT+TGG - chr7_3:54669128-54669147 None:intergenic 30.0%
!!! TATCATGAGTAGTTTTGGTT+AGG - chr7_3:54669138-54669157 None:intergenic 30.0%
!! AATTTTGAGTAAACCTCTCA+CGG - chr7_3:54669234-54669253 None:intergenic 30.0%
AGTTCTGTTGTAACATCTAA+AGG - chr7_3:54669340-54669359 None:intergenic 30.0%
!!! TCTCTTTTTTCTGAAATGCT+CGG - chr7_3:54669383-54669402 None:intergenic 30.0%
ATTCGGTTACTTGATGTAAA+TGG + chr7_3:54669946-54669965 Msa1110070:CDS 30.0%
ATTTGTCCTATTGATAGAGT+CGG - chr7_3:54670012-54670031 None:intergenic 30.0%
TCTGCTAAGAGAAAGAAATT+TGG + chr7_3:54670204-54670223 Msa1110070:CDS 30.0%
CTGCTAAGAGAAAGAAATTT+GGG + chr7_3:54670205-54670224 Msa1110070:CDS 30.0%
GAAATAAAAAACAGCACCTA+GGG - chr7_3:54670389-54670408 None:intergenic 30.0%
TGAAATAAAAAACAGCACCT+AGG - chr7_3:54670390-54670409 None:intergenic 30.0%
! TTGTTCTTTGAAGATGAACC+CGG - chr7_3:54667296-54667315 None:intergenic 35.0%
GCTTCTTTCACAGATTCAAA+TGG - chr7_3:54667359-54667378 None:intergenic 35.0%
AAAGAAGCTGTTAACCTCTT+CGG + chr7_3:54667371-54667390 Msa1110070:CDS 35.0%
AGAGATGGAAGATTGGTAAA+GGG - chr7_3:54667416-54667435 None:intergenic 35.0%
TTAGAATGAGAAGTGAGAGA+TGG - chr7_3:54667431-54667450 None:intergenic 35.0%
ATCTCTCACTTCTCATTCTA+AGG + chr7_3:54667430-54667449 Msa1110070:CDS 35.0%
TTTGTTAAAAAGCCACCCTT+TGG + chr7_3:54667546-54667565 Msa1110070:intron 35.0%
TGATAAAAGACACCACCAAA+GGG - chr7_3:54667564-54667583 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - chr7_3:54667565-54667584 None:intergenic 35.0%
ACACCTTCCTAAAAGTAAGT+TGG + chr7_3:54667621-54667640 Msa1110070:intron 35.0%
!! ACACCAACTTACTTTTAGGA+AGG - chr7_3:54667627-54667646 None:intergenic 35.0%
! TGTTGCTATTATTGAGTGCT+AGG + chr7_3:54667896-54667915 Msa1110070:intron 35.0%
! GTTGCTATTATTGAGTGCTA+GGG + chr7_3:54667897-54667916 Msa1110070:intron 35.0%
!!! TATTGAGTGCTAGGGTTTTT+TGG + chr7_3:54667905-54667924 Msa1110070:intron 35.0%
TGTGTGTAAATTGTCACGTA+CGG + chr7_3:54668070-54668089 Msa1110070:intron 35.0%
TGTTGGAAAATTTGGGAAGT+AGG + chr7_3:54668141-54668160 Msa1110070:intron 35.0%
ACATCTGTGACATACATACT+AGG - chr7_3:54668327-54668346 None:intergenic 35.0%
!! ATGACAGTTGGTCTTAAATG+GGG - chr7_3:54668663-54668682 None:intergenic 35.0%
!! CATGACAGTTGGTCTTAAAT+GGG - chr7_3:54668664-54668683 None:intergenic 35.0%
!! TCATGACAGTTGGTCTTAAA+TGG - chr7_3:54668665-54668684 None:intergenic 35.0%
! CAAGAGTTTCCCTTTCTTTT+AGG - chr7_3:54668859-54668878 None:intergenic 35.0%
! CAAATCTTCAACAAGCCTTT+TGG - chr7_3:54668906-54668925 None:intergenic 35.0%
TTCTCCAGACTTGATACTAA+TGG + chr7_3:54669090-54669109 Msa1110070:CDS 35.0%
GATACTAATGGAATTGAAGC+AGG + chr7_3:54669102-54669121 Msa1110070:CDS 35.0%
! GGCAATATCATGAGTAGTTT+TGG - chr7_3:54669143-54669162 None:intergenic 35.0%
!! ATTTTGAGTAAACCTCTCAC+GGG - chr7_3:54669233-54669252 None:intergenic 35.0%
CAATGCGTTAATTTCTGCAA+GGG - chr7_3:54669539-54669558 None:intergenic 35.0%
ACAATGCGTTAATTTCTGCA+AGG - chr7_3:54669540-54669559 None:intergenic 35.0%
ATATCTCTCCTATGATCAGA+TGG - chr7_3:54669928-54669947 None:intergenic 35.0%
CTGATCATAGGAGAGATATT+CGG + chr7_3:54669929-54669948 Msa1110070:CDS 35.0%
! TTAAAGCCGACTCTATCAAT+AGG + chr7_3:54670003-54670022 Msa1110070:CDS 35.0%
GAGCAAACTGAGAAAGAAAA+TGG + chr7_3:54670165-54670184 Msa1110070:CDS 35.0%
! GTCATTCCCTACATTTTGTA+TGG + chr7_3:54670491-54670510 Msa1110070:three_prime_UTR 35.0%
GAGAGATGGAAGATTGGTAA+AGG - chr7_3:54667417-54667436 None:intergenic 40.0%
AGAAGTGAGAGATGGAAGAT+TGG - chr7_3:54667423-54667442 None:intergenic 40.0%
!! TGACAGTTGGTCTTAAATGG+GGG - chr7_3:54668662-54668681 None:intergenic 40.0%
GACCAACTGTCATGAAAATC+TGG + chr7_3:54668670-54668689 Msa1110070:intron 40.0%
! TGCCAGATTTTCATGACAGT+TGG - chr7_3:54668675-54668694 None:intergenic 40.0%
GGCATAGAACATTCCTTCAT+GGG - chr7_3:54669058-54669077 None:intergenic 40.0%
AGGCATAGAACATTCCTTCA+TGG - chr7_3:54669059-54669078 None:intergenic 40.0%
CAAGTCTGGAGAAGATACAT+GGG - chr7_3:54669083-54669102 None:intergenic 40.0%
TCAAGTCTGGAGAAGATACA+TGG - chr7_3:54669084-54669103 None:intergenic 40.0%
TTCAACAGTAGCTCGTACAT+CGG - chr7_3:54669164-54669183 None:intergenic 40.0%
CTTGCAGTCTTAATCTGGTT+TGG - chr7_3:54669291-54669310 None:intergenic 40.0%
AACCAGATTAAGACTGCAAG+TGG + chr7_3:54669291-54669310 Msa1110070:CDS 40.0%
TTAAGACTGCAAGTGGCAAA+AGG + chr7_3:54669298-54669317 Msa1110070:CDS 40.0%
TGATAAGAACTGCCGAAATC+AGG + chr7_3:54669461-54669480 Msa1110070:CDS 40.0%
AGAAGTTCAAACCTGCAAGA+AGG + chr7_3:54669762-54669781 Msa1110070:CDS 40.0%
CCTTTGTAGAGCTTCTTCAA+GGG - chr7_3:54669788-54669807 None:intergenic 40.0%
CCTTGAAGAAGCTCTACAAA+GGG + chr7_3:54669786-54669805 Msa1110070:CDS 40.0%
TGGAAGTTGAAGAGGCTTTA+AGG + chr7_3:54669833-54669852 Msa1110070:CDS 40.0%
!! TTGAAGAGGCTTTAAGGAAG+TGG + chr7_3:54669839-54669858 Msa1110070:CDS 40.0%
!! GATAGAGTCGGCTTTAAAAC+AGG - chr7_3:54670000-54670019 None:intergenic 40.0%
CAATAGGACAAATACTGAGC+AGG + chr7_3:54670019-54670038 Msa1110070:CDS 40.0%
! ATCGGTTCTTCAAACTCTTC+TGG - chr7_3:54670057-54670076 None:intergenic 40.0%
AGAAGAGTTTGAAGAACCGA+TGG + chr7_3:54670056-54670075 Msa1110070:CDS 40.0%
! ACTATTTCTCCATGCACCAT+CGG - chr7_3:54670075-54670094 None:intergenic 40.0%
!! AAACAGCAGAAGGTGTCATT+AGG + chr7_3:54670102-54670121 Msa1110070:CDS 40.0%
! GTGTCATTAGGTCATATGCT+TGG + chr7_3:54670114-54670133 Msa1110070:CDS 40.0%
! TCAGTTTGCTCGTCAAACAA+TGG - chr7_3:54670156-54670175 None:intergenic 40.0%
AGAAACCAATGCTGAACTTG+AGG + chr7_3:54670274-54670293 Msa1110070:CDS 40.0%
ATTCACCTCAAGTTCAGCAT+TGG - chr7_3:54670282-54670301 None:intergenic 40.0%
TAGCTCTTGTCATTGCTAGA+TGG - chr7_3:54670327-54670346 None:intergenic 40.0%
CAAAAGTAGCGTCTCCTATT+AGG + chr7_3:54670351-54670370 Msa1110070:three_prime_UTR 40.0%
! TGTGTCGTGTTGGAGTGTTT+GGG - chr7_3:54667160-54667179 None:intergenic 45.0%
! TTGTGTCGTGTTGGAGTGTT+TGG - chr7_3:54667161-54667180 None:intergenic 45.0%
GTGAAGATGTTGTGTCGTGT+TGG - chr7_3:54667170-54667189 None:intergenic 45.0%
GTTAAAAAGCCACCCTTTGG+TGG + chr7_3:54667549-54667568 Msa1110070:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr7_3:54667561-54667580 None:intergenic 45.0%
! AGGACAATGTAGCTCTGTGA+TGG - chr7_3:54668633-54668652 None:intergenic 45.0%
! GTCTTAAATGGGGGTGTAGA+AGG - chr7_3:54668653-54668672 None:intergenic 45.0%
!! TGGTGCTGCAAACAAACAAG+AGG - chr7_3:54668773-54668792 None:intergenic 45.0%
ACCACATAGAAGAGCTTGAC+AGG + chr7_3:54668789-54668808 Msa1110070:CDS 45.0%
CCACATAGAAGAGCTTGACA+GGG + chr7_3:54668790-54668809 Msa1110070:CDS 45.0%
! ATGGGTTGAAGAACCTCAGA+CGG - chr7_3:54669040-54669059 None:intergenic 45.0%
TGAGGTTCTTCAACCCATGA+AGG + chr7_3:54669042-54669061 Msa1110070:CDS 45.0%
TCTGGAGAAGATACATGGGA+AGG - chr7_3:54669079-54669098 None:intergenic 45.0%
! TGCCACTTGCAGTCTTAATC+TGG - chr7_3:54669296-54669315 None:intergenic 45.0%
! ACTCCATCGATTGAGTTCAG+AGG + chr7_3:54669357-54669376 Msa1110070:CDS 45.0%
AAGAACTGCCGAAATCAGGT+TGG + chr7_3:54669465-54669484 Msa1110070:CDS 45.0%
TAACGCATTGTCTAGCCATG+AGG + chr7_3:54669549-54669568 Msa1110070:CDS 45.0%
AACGCATTGTCTAGCCATGA+GGG + chr7_3:54669550-54669569 Msa1110070:CDS 45.0%
TCGTAAAGCTCAAGAAGCAG+AGG + chr7_3:54669642-54669661 Msa1110070:CDS 45.0%
CCCTTGAAGAAGCTCTACAA+AGG + chr7_3:54669785-54669804 Msa1110070:CDS 45.0%
CCCTTTGTAGAGCTTCTTCA+AGG - chr7_3:54669789-54669808 None:intergenic 45.0%
AGAAGCTCTACAAAGGGTAG+AGG + chr7_3:54669792-54669811 Msa1110070:CDS 45.0%
AGGGAAGTTGGAAGTTGAAG+AGG + chr7_3:54669825-54669844 Msa1110070:CDS 45.0%
TTAAGGAAGTGGCGATCTGA+CGG + chr7_3:54669850-54669869 Msa1110070:CDS 45.0%
ACTCTGGTCCATCTGATCAT+AGG + chr7_3:54669917-54669936 Msa1110070:CDS 45.0%
!! AGTCGGCTTTAAAACAGGCT+TGG - chr7_3:54669995-54670014 None:intergenic 45.0%
TTTGAAGAACCGATGGTGCA+TGG + chr7_3:54670063-54670082 Msa1110070:CDS 45.0%
GGTGCATGGAGAAATAGTCT+CGG + chr7_3:54670077-54670096 Msa1110070:CDS 45.0%
GACGACGTATCAAGCTGAAC+CGG + chr7_3:54667274-54667293 Msa1110070:CDS 50.0%
ACGACGTATCAAGCTGAACC+GGG + chr7_3:54667275-54667294 Msa1110070:CDS 50.0%
GAAGCTGTTAACCTCTTCGG+TGG + chr7_3:54667374-54667393 Msa1110070:CDS 50.0%
GTTAACCTCTTCGGTGGTGT+TGG + chr7_3:54667380-54667399 Msa1110070:CDS 50.0%
AGTAACCAACACCACCGAAG+AGG - chr7_3:54667388-54667407 None:intergenic 50.0%
!! TCTTCGGTGGTGTTGGTTAC+TGG + chr7_3:54667387-54667406 Msa1110070:CDS 50.0%
CCCTGTCAAGCTCTTCTATG+TGG - chr7_3:54668793-54668812 None:intergenic 50.0%
GCTTGACAGGGAGAAACTAG+AGG + chr7_3:54668802-54668821 Msa1110070:CDS 50.0%
AAACCAATCGAGTCCGTCTG+AGG + chr7_3:54669024-54669043 Msa1110070:CDS 50.0%
CACTTGAGAAAACCCGTGAG+AGG + chr7_3:54669218-54669237 Msa1110070:CDS 50.0%
!! TGCCGAAATCAGGTTGGTTG+CGG + chr7_3:54669471-54669490 Msa1110070:CDS 50.0%
TGCCGCAACCAACCTGATTT+CGG - chr7_3:54669476-54669495 None:intergenic 50.0%
!! AAATCAGGTTGGTTGCGGCA+AGG + chr7_3:54669476-54669495 Msa1110070:CDS 50.0%
GGTTGCGGCAAGGAAAATGA+AGG + chr7_3:54669486-54669505 Msa1110070:CDS 50.0%
TTCTTCAAGGGCCTTCTTGC+AGG - chr7_3:54669776-54669795 None:intergenic 50.0%
GGCGATCTGACGGTCAAAAA+AGG + chr7_3:54669860-54669879 Msa1110070:CDS 50.0%
AGTCTCGGTGAAACAGCAGA+AGG + chr7_3:54670092-54670111 Msa1110070:CDS 50.0%
GGAATGTGCTGAGGCCTAAT+AGG - chr7_3:54670368-54670387 None:intergenic 50.0%
CAGGGAGAAACTAGAGGAGC+AGG + chr7_3:54668808-54668827 Msa1110070:CDS 55.0%
! GAACCTCAGACGGACTCGAT+TGG - chr7_3:54669030-54669049 None:intergenic 55.0%
!! GTGGCAAAAGGTGCTGCTTC+TGG + chr7_3:54669310-54669329 Msa1110070:CDS 55.0%
CGGCCTCTGAACTCAATCGA+TGG - chr7_3:54669363-54669382 None:intergenic 55.0%
ACTCGTCTGGTGTACCCTCA+TGG - chr7_3:54669567-54669586 None:intergenic 55.0%
CGCTTCTGCATACACTCGTC+TGG - chr7_3:54669580-54669599 None:intergenic 55.0%
AGGGTAGAGGCTGCAGATAG+AGG + chr7_3:54669805-54669824 Msa1110070:CDS 55.0%
GGGTAGAGGCTGCAGATAGA+GGG + chr7_3:54669806-54669825 Msa1110070:CDS 55.0%
GGCTGCAGATAGAGGGAAGT+TGG + chr7_3:54669813-54669832 Msa1110070:CDS 55.0%
TAGGCCTCAGCACATTCCCT+AGG + chr7_3:54670370-54670389 Msa1110070:three_prime_UTR 55.0%
AGCACCTAGGGAATGTGCTG+AGG - chr7_3:54670377-54670396 None:intergenic 55.0%
! AGAGGAGCAGGCAAGAGCGT+TGG + chr7_3:54668820-54668839 Msa1110070:CDS 60.0%
! CGAGTGTATGCAGAAGCGCG+AGG + chr7_3:54669582-54669601 Msa1110070:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 54667149 54670569 54667149 ID=Msa1110070;Name=Msa1110070
chr7_3 mRNA 54667149 54670569 54667149 ID=Msa1110070-mRNA-1;Parent=Msa1110070;Name=Msa1110070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=102|1|1|1|1|1|2|270|570
chr7_3 exon 54667149 54667451 54667149 ID=Msa1110070-mRNA-1:exon:11490;Parent=Msa1110070-mRNA-1
chr7_3 exon 54668788 54670569 54668788 ID=Msa1110070-mRNA-1:exon:11491;Parent=Msa1110070-mRNA-1
chr7_3 five_prime_UTR 54667149 54667250 54667149 ID=Msa1110070-mRNA-1:five_prime_utr;Parent=Msa1110070-mRNA-1
chr7_3 CDS 54667251 54667451 54667251 ID=Msa1110070-mRNA-1:cds;Parent=Msa1110070-mRNA-1
chr7_3 CDS 54668788 54670299 54668788 ID=Msa1110070-mRNA-1:cds;Parent=Msa1110070-mRNA-1
chr7_3 three_prime_UTR 54670300 54670569 54670300 ID=Msa1110070-mRNA-1:three_prime_utr;Parent=Msa1110070-mRNA-1
Gene Sequence

>Msa1110070

ATGGAAGCTGAAGTGATGAAAACGACGACGTATCAAGCTGAACCGGGTTCATCTTCAAAGAACAAGATAATGGATAGTTTCAGAACTGAGATTGATACTTCAGCTCCATTTGAATCTGTGAAAGAAGCTGTTAACCTCTTCGGTGGTGTTGGTTACTGGAAACCCTTTACCAATCTTCCATCTCTCACTTCTCATTCTAAGCACCACATAGAAGAGCTTGACAGGGAGAAACTAGAGGAGCAGGCAAGAGCGTTGGAGAAAGAACTGATCCTAAAAGAAAGGGAAACTCTTGATGTGTTGAAAGAATTAGAAAAGACCAAAAGGCTTGTTGAAGATTTGAAATCAAAGCTACAGAAGGAAGAATCTGAAACAATATTGAATCTCGGGATGAGTGTATGTGATCAAAGATCGATTGTAGATGAGAAAGAAGTAAAGGAAAACCAATCGAGTCCGTCTGAGGTTCTTCAACCCATGAAGGAATGTTCTATGCCTTCCCATGTATCTTCTCCAGACTTGATACTAATGGAATTGAAGCAGGCCAAATTGAACCTAACCAAAACTACTCATGATATTGCCGATGTACGAGCTACTGTTGAATCTCTTAATAAGAAATTAGAGAAAGAAAAGATCTCACTTGAGAAAACCCGTGAGAGGTTTACTCAAAATTGTTCGAAAATGTCTTGTCTTGAAGAAGAGCTAAACCAAACCAGATTAAGACTGCAAGTGGCAAAAGGTGCTGCTTCTGGTGATCCTTTAGATGTTACAACAGAACTCCATCGATTGAGTTCAGAGGCCGAGCATTTCAGAAAAAAGAGAGAATCCGCAAAATCAGAAGTTTTAAAAGCACTGTCTGAGATTGAGCTGACAGAAGCTATGATAAGAACTGCCGAAATCAGGTTGGTTGCGGCAAGGAAAATGAAGGAAGCTTCTAGAGCTGCAGAAGCTGCTACCCTTGCAGAAATTAACGCATTGTCTAGCCATGAGGGTACACCAGACGAGTGTATGCAGAAGCGCGAGGAAATCACTCTTTCAGTTGTAGAGTATACTACTCTGACTCGTAAAGCTCAAGAAGCAGAGGAACAATCAAAGAAGAGAGTAGCAGATGCTATGCTTGAAGTTGATGAAGCAAATTCTTCGCAGATGAATATTTTTAAAAGGGTAGAGGAAGCAACAGAAGAAGTTCAAACCTGCAAGAAGGCCCTTGAAGAAGCTCTACAAAGGGTAGAGGCTGCAGATAGAGGGAAGTTGGAAGTTGAAGAGGCTTTAAGGAAGTGGCGATCTGACGGTCAAAAAAGGCGTTCTTCGACAAATAGCTGTATGAAGTTTAAAAACTCTGGTCCATCTGATCATAGGAGAGATATTCGGTTACTTGATGTAAATGGATTGAATTTGGTAAACGATGAAGCCAAGCCTGTTTTAAAGCCGACTCTATCAATAGGACAAATACTGAGCAGGAAGCTGCTTATACCAGAAGAGTTTGAAGAACCGATGGTGCATGGAGAAATAGTCTCGGTGAAACAGCAGAAGGTGTCATTAGGTCATATGCTTGGAAAGCACAATGACAGTCCATTGTTTGACGAGCAAACTGAGAAAGAAAATGGTCAAAAGAAGCAGTTTTCTGCTAAGAGAAAGAAATTTGGGTTCGCAAGATTCTCGCATCTTTTGTCAAAACAGAATAAAAAGAAGAAGAAACCAATGCTGAACTTGAGGTGA

Protein sequence

>Msa1110070

MEAEVMKTTTYQAEPGSSSKNKIMDSFRTEIDTSAPFESVKEAVNLFGGVGYWKPFTNLPSLTSHSKHHIEELDREKLEEQARALEKELILKERETLDVLKELEKTKRLVEDLKSKLQKEESETILNLGMSVCDQRSIVDEKEVKENQSSPSEVLQPMKECSMPSHVSSPDLILMELKQAKLNLTKTTHDIADVRATVESLNKKLEKEKISLEKTRERFTQNCSKMSCLEEELNQTRLRLQVAKGAASGDPLDVTTELHRLSSEAEHFRKKRESAKSEVLKALSEIELTEAMIRTAEIRLVAARKMKEASRAAEAATLAEINALSSHEGTPDECMQKREEITLSVVEYTTLTRKAQEAEEQSKKRVADAMLEVDEANSSQMNIFKRVEEATEEVQTCKKALEEALQRVEAADRGKLEVEEALRKWRSDGQKRRSSTNSCMKFKNSGPSDHRRDIRLLDVNGLNLVNDEAKPVLKPTLSIGQILSRKLLIPEEFEEPMVHGEIVSVKQQKVSLGHMLGKHNDSPLFDEQTEKENGQKKQFSAKRKKFGFARFSHLLSKQNKKKKKPMLNLR*