Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153770 | XP_013449229.1 | 86.500 | 200 | 0 | 1 | 1 | 173 | 1 | 200 | 1.08e-117 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153770 | sp|Q42808|TBP_SOYBN | 85.000 | 200 | 3 | 1 | 1 | 173 | 1 | 200 | 2.83e-118 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153770 | B7FMY1 | 86.500 | 200 | 0 | 1 | 1 | 173 | 1 | 200 | 5.18e-118 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1026250 | Msa1153770 | 0.870307 | 1.610424e-66 | -8.615850e-47 |
| Msa1145100 | Msa1153770 | 0.809583 | 1.761525e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153770 | MtrunA17_Chr7g0244531 | 86.500 | 200 | 0 | 1 | 1 | 173 | 1 | 200 | 4.95e-121 | 340 |
| Msa1153770 | MtrunA17_Chr4g0013121 | 82.022 | 178 | 5 | 1 | 1 | 151 | 1 | 178 | 5.31e-99 | 283 |
| Msa1153770 | MtrunA17_Chr3g0110921 | 61.500 | 200 | 50 | 1 | 1 | 173 | 15 | 214 | 1.32e-77 | 231 |
| Msa1153770 | MtrunA17_Chr3g0111031 | 58.678 | 121 | 33 | 1 | 29 | 149 | 89 | 192 | 4.90e-38 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153770 | AT1G55520.2 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1153770 | AT1G55520.1 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1153770 | AT1G55520.4 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1153770 | AT3G13445.1 | 80.000 | 200 | 13 | 1 | 1 | 173 | 1 | 200 | 2.34e-111 | 315 |
| Msa1153770 | AT1G55520.3 | 80.226 | 177 | 8 | 1 | 1 | 150 | 1 | 177 | 2.84e-96 | 276 |
| Msa1153770 | AT3G13445.2 | 79.661 | 177 | 9 | 1 | 1 | 150 | 1 | 177 | 2.05e-95 | 275 |
Find 85 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAACTTTACTTGATTTA+AGG | 0.144468 | 7_4:-40788832 | None:intergenic |
| GGGCTTCCCCGCTAAGTTTA+AGG | 0.162066 | 7_4:+40786986 | Msa1153770:CDS |
| CTCTCTCACCCTTTCTTTCA+TGG | 0.180589 | 7_4:+40789069 | Msa1153770:three_prime_UTR |
| TTGAGGGATCTGAGAGAAAT+TGG | 0.225121 | 7_4:-40784244 | None:intergenic |
| TAGCGGGGAAGCCCAGTTTC+TGG | 0.228240 | 7_4:-40786977 | None:intergenic |
| TTGTAATAAGGGGTATAAAA+AGG | 0.240480 | 7_4:-40784151 | None:intergenic |
| AAGAACCCTACTTAAAATTA+AGG | 0.244771 | 7_4:-40788742 | None:intergenic |
| TGAAGTGAGAATTTGTAATA+AGG | 0.258956 | 7_4:-40784163 | None:intergenic |
| GTATTGCTTATATTCGTATC+TGG | 0.259998 | 7_4:+40787829 | Msa1153770:CDS |
| ATATTGAGACAGAAGATATT+TGG | 0.277193 | 7_4:+40788537 | Msa1153770:three_prime_UTR |
| TGCTAGAATTATCCAGAAAC+TGG | 0.288731 | 7_4:+40786965 | Msa1153770:CDS |
| AGGTAGCCAACAACAGTAAA+AGG | 0.299090 | 7_4:-40788722 | None:intergenic |
| TATGAACCAGAGTTGTTTCC+AGG | 0.329714 | 7_4:+40787775 | Msa1153770:CDS |
| TGAATGAAGAAGAGTTTGTT+TGG | 0.331988 | 7_4:-40784203 | None:intergenic |
| GAAGTGAGAATTTGTAATAA+GGG | 0.360756 | 7_4:-40784162 | None:intergenic |
| GATCTATCAAAGCATCCTTC+TGG | 0.372034 | 7_4:+40784652 | Msa1153770:CDS |
| GAGTGAGGTGCAATCAAAAT+TGG | 0.374093 | 7_4:+40786682 | Msa1153770:CDS |
| TTTCAGAAAATATATTTAAG+AGG | 0.375723 | 7_4:+40788648 | Msa1153770:three_prime_UTR |
| GAATATAAGCAATACTATCT+TGG | 0.376880 | 7_4:-40787821 | None:intergenic |
| TAAGAGTGAATAGGAGCTTA+TGG | 0.378139 | 7_4:+40784597 | Msa1153770:exon |
| ATCCAGTGCTTACTGAGTTC+AGG | 0.387503 | 7_4:+40788007 | Msa1153770:CDS |
| GCGCATATGACAAAAGCTTA+TGG | 0.387846 | 7_4:-40788897 | None:intergenic |
| GTTGGCTCCCTTCCAATCCT+TGG | 0.414450 | 7_4:-40784624 | None:intergenic |
| AGCCATGTGCATACCATTGT+TGG | 0.417991 | 7_4:-40788035 | None:intergenic |
| CAGAGAGGAACGTGGATTGT+AGG | 0.421347 | 7_4:+40788498 | Msa1153770:three_prime_UTR |
| CTGCTGTGATTATGAGGATC+CGG | 0.422520 | 7_4:+40785921 | Msa1153770:CDS |
| AAGAGTTTGTTTGGAGAGAG+CGG | 0.432295 | 7_4:-40784194 | None:intergenic |
| TGAGAGAGATGGAGTAAACT+TGG | 0.433704 | 7_4:-40789054 | None:intergenic |
| AGAAGAAATGATGGATCTGT+TGG | 0.437001 | 7_4:-40784083 | None:intergenic |
| TATACAAATTAAGAGTGAAT+AGG | 0.441761 | 7_4:+40784588 | Msa1153770:five_prime_UTR |
| AATATAAGCAATACTATCTT+GGG | 0.443178 | 7_4:-40787820 | None:intergenic |
| TCATATGCGCTTAATGTATG+AGG | 0.451543 | 7_4:+40788910 | Msa1153770:three_prime_UTR |
| AAAAGAACGTACCATCTTGC+CGG | 0.456865 | 7_4:-40785975 | None:intergenic |
| ATCAAAATTGGCAGCAAGGA+AGG | 0.463520 | 7_4:+40786694 | Msa1153770:CDS |
| TATTGCTTATATTCGTATCT+GGG | 0.466922 | 7_4:+40787830 | Msa1153770:CDS |
| ATATATTTAAGAGGCTGAAA+AGG | 0.468854 | 7_4:+40788657 | Msa1153770:three_prime_UTR |
| AGTAGTACCTTAAACTTAGC+GGG | 0.472811 | 7_4:-40786993 | None:intergenic |
| AGAAATTGGAGTTGAAATGA+AGG | 0.475515 | 7_4:-40784230 | None:intergenic |
| TTTAAGATTCAGAACATTGT+CGG | 0.475654 | 7_4:+40787140 | Msa1153770:CDS |
| TGCCATTGGTAGGTCTGTAC+TGG | 0.475952 | 7_4:+40786653 | Msa1153770:intron |
| AGAGTTTGTTTGGAGAGAGC+GGG | 0.476230 | 7_4:-40784193 | None:intergenic |
| TGAATGTATACTATTACATA+TGG | 0.484293 | 7_4:-40789028 | None:intergenic |
| GTATAATGTCCATGAAAGAA+AGG | 0.485152 | 7_4:-40789078 | None:intergenic |
| TGCAAGACCCTCCAGCCGTA+TGG | 0.489380 | 7_4:-40787183 | None:intergenic |
| TTCATTCGATAGATTAGTCC+TGG | 0.490443 | 7_4:-40787793 | None:intergenic |
| TTCCTGAACTCAGTAAGCAC+TGG | 0.491804 | 7_4:-40788009 | None:intergenic |
| GCAAGACCCTCCAGCCGTAT+GGG | 0.496807 | 7_4:-40787182 | None:intergenic |
| GCTTATGGCTGACCAAGGAT+TGG | 0.510788 | 7_4:+40784612 | Msa1153770:exon |
| GAAAGAAAGGGTGAGAGAGA+TGG | 0.528138 | 7_4:-40789065 | None:intergenic |
| GGATGCTTTGATAGATCCAC+AGG | 0.531550 | 7_4:-40784646 | None:intergenic |
| AGAGAGATTGTGAATGCGAT+TGG | 0.539251 | 7_4:-40784109 | None:intergenic |
| TGTCAAGTTCCCCATACGGC+TGG | 0.541848 | 7_4:+40787172 | Msa1153770:CDS |
| ATGTATACTATTACATATGG+TGG | 0.543054 | 7_4:-40789025 | None:intergenic |
| TATAATGTCCATGAAAGAAA+GGG | 0.543621 | 7_4:-40789077 | None:intergenic |
| CTGTTGGATTATGAAGATAG+AGG | 0.546558 | 7_4:-40784067 | None:intergenic |
| AAAGAAACTCACTGAAGAGT+AGG | 0.550288 | 7_4:-40784682 | None:intergenic |
| TCTGGGAAAATTGTTCTGAC+AGG | 0.552768 | 7_4:+40787847 | Msa1153770:CDS |
| ATTAGTCCTGGAAACAACTC+TGG | 0.559444 | 7_4:-40787781 | None:intergenic |
| ATGGCTGACCAAGGATTGGA+AGG | 0.560659 | 7_4:+40784616 | Msa1153770:CDS |
| TGCAATCAAAATTGGCAGCA+AGG | 0.561827 | 7_4:+40786690 | Msa1153770:CDS |
| AAGTGAGAATTTGTAATAAG+GGG | 0.563510 | 7_4:-40784161 | None:intergenic |
| TGTATACTATTACATATGGT+GGG | 0.564050 | 7_4:-40789024 | None:intergenic |
| GAAATTGGAGTTGAAATGAA+GGG | 0.565346 | 7_4:-40784229 | None:intergenic |
| AGATAGAGGAGAGAGAATGA+AGG | 0.566625 | 7_4:-40784053 | None:intergenic |
| CAAGTTCCCCATACGGCTGG+AGG | 0.572877 | 7_4:+40787175 | Msa1153770:CDS |
| GATTGGAAGAGAAGAAATGA+TGG | 0.579792 | 7_4:-40784092 | None:intergenic |
| GTGATGTCAAGTTCCCCATA+CGG | 0.581797 | 7_4:+40787168 | Msa1153770:CDS |
| AATTGTTCTGACAGGAGCCA+AGG | 0.589296 | 7_4:+40787855 | Msa1153770:CDS |
| AAGTAGTACCTTAAACTTAG+CGG | 0.590355 | 7_4:-40786994 | None:intergenic |
| CACTGGATATATGTTCTCAA+AGG | 0.592156 | 7_4:-40787992 | None:intergenic |
| TGCTGTGATTATGAGGATCC+GGG | 0.596602 | 7_4:+40785922 | Msa1153770:CDS |
| TATCATCATGAGTAAGAGCA+AGG | 0.599234 | 7_4:+40788467 | Msa1153770:three_prime_UTR |
| GAGGGTCTTGCATATTCCCA+CGG | 0.600585 | 7_4:+40787194 | Msa1153770:CDS |
| CAAGACCCTCCAGCCGTATG+GGG | 0.611024 | 7_4:-40787181 | None:intergenic |
| AAGTTCCCCATACGGCTGGA+GGG | 0.615249 | 7_4:+40787176 | Msa1153770:CDS |
| GCTTTGATAGATCCACAGGT+TGG | 0.629665 | 7_4:-40784642 | None:intergenic |
| TACACTTGAGAAAGCACCGT+GGG | 0.640895 | 7_4:-40787210 | None:intergenic |
| ATTGGAAGGGAGCCAACCTG+TGG | 0.653530 | 7_4:+40784630 | Msa1153770:CDS |
| GCTAGAATTATCCAGAAACT+GGG | 0.655602 | 7_4:+40786966 | Msa1153770:CDS |
| TGGCTGACCAAGGATTGGAA+GGG | 0.658521 | 7_4:+40784617 | Msa1153770:CDS |
| TAGGAGCTTATGGCTGACCA+AGG | 0.664090 | 7_4:+40784607 | Msa1153770:exon |
| GTAGTACCTTAAACTTAGCG+GGG | 0.665555 | 7_4:-40786992 | None:intergenic |
| AGAGTAGGCACAATTCCAGA+AGG | 0.669455 | 7_4:-40784667 | None:intergenic |
| CTGTACTGGAGCTAAGAGTG+AGG | 0.686066 | 7_4:+40786667 | Msa1153770:CDS |
| TTACACTTGAGAAAGCACCG+TGG | 0.825503 | 7_4:-40787211 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAATGTTCATAA+TGG | + | chr7_4:40785278-40785297 | Msa1153770:intron | 10.0% |
| !! | TGATAAATATAAAATAAATC+TGG | - | chr7_4:40787482-40787501 | None:intergenic | 10.0% |
| !! | TATACTATATAAAAGAAATT+AGG | - | chr7_4:40787705-40787724 | None:intergenic | 10.0% |
| !! | GTAAAAATATAAAATTACAT+GGG | - | chr7_4:40787899-40787918 | None:intergenic | 10.0% |
| !!! | TTTTAATTTCAATTTTGTTT+AGG | + | chr7_4:40787948-40787967 | Msa1153770:intron | 10.0% |
| !!! | TTAAGAATTTTTGTTTGTTT+TGG | - | chr7_4:40784290-40784309 | None:intergenic | 15.0% |
| !!! | ATTCTTAATTTTCACTTTTA+AGG | + | chr7_4:40784302-40784321 | Msa1153770:five_prime_UTR | 15.0% |
| !! | ATTAGATGAAAATTTCAAAA+GGG | - | chr7_4:40784371-40784390 | None:intergenic | 15.0% |
| !! | AATTAGATGAAAATTTCAAA+AGG | - | chr7_4:40784372-40784391 | None:intergenic | 15.0% |
| !!! | GACAAAAAATTGTTTTTTTA+AGG | + | chr7_4:40784394-40784413 | Msa1153770:intron | 15.0% |
| !!! | CTTTGTTTTTTAATGATTAT+TGG | + | chr7_4:40784464-40784483 | Msa1153770:intron | 15.0% |
| !!! | TTGATTTTGTAATTAAGTTA+AGG | + | chr7_4:40784509-40784528 | Msa1153770:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | - | chr7_4:40784849-40784868 | None:intergenic | 15.0% |
| !!! | TAAAATTAACTCTTTTCTAA+TGG | + | chr7_4:40785022-40785041 | Msa1153770:intron | 15.0% |
| !!! | AAAATTAACTCTTTTCTAAT+GGG | + | chr7_4:40785023-40785042 | Msa1153770:intron | 15.0% |
| !!! | AAAAATGTGCTATTTATATT+TGG | + | chr7_4:40785507-40785526 | Msa1153770:intron | 15.0% |
| !!! | TGGAATTTAATTTTATTGAA+AGG | + | chr7_4:40786187-40786206 | Msa1153770:intron | 15.0% |
| !!! | TTTTATGCACAAAATATATT+GGG | - | chr7_4:40786493-40786512 | None:intergenic | 15.0% |
| !!! | TTTTTATGCACAAAATATAT+TGG | - | chr7_4:40786494-40786513 | None:intergenic | 15.0% |
| !!! | TAGTTACTTATATCTTTTTA+AGG | + | chr7_4:40787553-40787572 | Msa1153770:intron | 15.0% |
| !!! | AGTTACTTATATCTTTTTAA+GGG | + | chr7_4:40787554-40787573 | Msa1153770:intron | 15.0% |
| !! | GGTAAAAATATAAAATTACA+TGG | - | chr7_4:40787900-40787919 | None:intergenic | 15.0% |
| !! | TTTCAGAAAATATATTTAAG+AGG | + | chr7_4:40788648-40788667 | Msa1153770:three_prime_UTR | 15.0% |
| !! | TATAAACTTTACTTGATTTA+AGG | - | chr7_4:40788835-40788854 | None:intergenic | 15.0% |
| !!! | TTTTTGTATGCAATTTTTGA+GGG | - | chr7_4:40784263-40784282 | None:intergenic | 20.0% |
| !!! | TTTTTTGTATGCAATTTTTG+AGG | - | chr7_4:40784264-40784283 | None:intergenic | 20.0% |
| !!! | GTGATTTTAAAGAAGTATTA+CGG | - | chr7_4:40784336-40784355 | None:intergenic | 20.0% |
| !!! | TGATGTTTTTATAACCTAAT+TGG | + | chr7_4:40784434-40784453 | Msa1153770:intron | 20.0% |
| !! | AACAAAGAAAAAAACCAATT+AGG | - | chr7_4:40784451-40784470 | None:intergenic | 20.0% |
| !!! | TTGTAATTAAGTTAAGGTTT+TGG | + | chr7_4:40784515-40784534 | Msa1153770:intron | 20.0% |
| !! | TATACAAATTAAGAGTGAAT+AGG | + | chr7_4:40784588-40784607 | Msa1153770:five_prime_UTR | 20.0% |
| !!! | AAATTAACTCTTTTCTAATG+GGG | + | chr7_4:40785024-40785043 | Msa1153770:intron | 20.0% |
| !! | TTTATGCACAAAATATATTG+GGG | - | chr7_4:40786492-40786511 | None:intergenic | 20.0% |
| !! | TGTGCATAAAAATAAAAATG+AGG | + | chr7_4:40786502-40786521 | Msa1153770:intron | 20.0% |
| !! | AAAAAGATATAAGTAACTAC+TGG | - | chr7_4:40787552-40787571 | None:intergenic | 20.0% |
| !!! | TGAGTTTTTAAAATTCAAAC+TGG | + | chr7_4:40787578-40787597 | Msa1153770:intron | 20.0% |
| !! | AATATAAGCAATACTATCTT+GGG | - | chr7_4:40787823-40787842 | None:intergenic | 20.0% |
| !!! | ATTTTCTTGGTTTTGTATTA+TGG | + | chr7_4:40788239-40788258 | Msa1153770:intron | 20.0% |
| !! | TGAATGTATACTATTACATA+TGG | - | chr7_4:40789031-40789050 | None:intergenic | 20.0% |
| !! | TGTAATAAGGGGTATAAAAA+GGG | - | chr7_4:40784153-40784172 | None:intergenic | 25.0% |
| !! | TTGTAATAAGGGGTATAAAA+AGG | - | chr7_4:40784154-40784173 | None:intergenic | 25.0% |
| ! | AAGTGAGAATTTGTAATAAG+GGG | - | chr7_4:40784164-40784183 | None:intergenic | 25.0% |
| ! | GAAGTGAGAATTTGTAATAA+GGG | - | chr7_4:40784165-40784184 | None:intergenic | 25.0% |
| ! | TGAAGTGAGAATTTGTAATA+AGG | - | chr7_4:40784166-40784185 | None:intergenic | 25.0% |
| ! | TTCTTTATTACAAATGAGCA+TGG | - | chr7_4:40784780-40784799 | None:intergenic | 25.0% |
| !! | TAAAGAGACAAGCTAAATTT+TGG | - | chr7_4:40785060-40785079 | None:intergenic | 25.0% |
| !!! | ATACGAGTTTGTTGATAATT+CGG | + | chr7_4:40785089-40785108 | Msa1153770:intron | 25.0% |
| ! | CGTTGGTATAAAACTTTATT+GGG | - | chr7_4:40785236-40785255 | None:intergenic | 25.0% |
| ! | TCGTTGGTATAAAACTTTAT+TGG | - | chr7_4:40785237-40785256 | None:intergenic | 25.0% |
| ! | GTTTGTATCAATAGTAATAC+TGG | - | chr7_4:40785761-40785780 | None:intergenic | 25.0% |
| ! | TTAAATGACTCCAAAATTCT+AGG | - | chr7_4:40786119-40786138 | None:intergenic | 25.0% |
| ! | AGAAAAAGCAGTAAACAATT+TGG | - | chr7_4:40786551-40786570 | None:intergenic | 25.0% |
| ! | CAAAAACAAGCTAAGATTAA+TGG | - | chr7_4:40786810-40786829 | None:intergenic | 25.0% |
| !! | TTTAAGATTCAGAACATTGT+CGG | + | chr7_4:40787140-40787159 | Msa1153770:CDS | 25.0% |
| !!! | AAATTGTAGTGGCTATTTTA+AGG | - | chr7_4:40787522-40787541 | None:intergenic | 25.0% |
| ! | CTGGAAAAAAAAAATTGTAG+TGG | - | chr7_4:40787533-40787552 | None:intergenic | 25.0% |
| !!! | TTTTAAAATTCAAACTGGAG+TGG | + | chr7_4:40787583-40787602 | Msa1153770:intron | 25.0% |
| !! | TTTAAAATTCAAACTGGAGT+GGG | + | chr7_4:40787584-40787603 | Msa1153770:intron | 25.0% |
| ! | GAATATAAGCAATACTATCT+TGG | - | chr7_4:40787824-40787843 | None:intergenic | 25.0% |
| ! | TATTGCTTATATTCGTATCT+GGG | + | chr7_4:40787830-40787849 | Msa1153770:CDS | 25.0% |
| ! | AAAACATTAGTAGTACAATG+AGG | - | chr7_4:40787932-40787951 | None:intergenic | 25.0% |
| ! | GATATACATGTTGTAATTAC+TGG | + | chr7_4:40788088-40788107 | Msa1153770:intron | 25.0% |
| ! | AAGCAAAACAAAAGACAAAA+TGG | - | chr7_4:40788136-40788155 | None:intergenic | 25.0% |
| ! | TATCATGAGATACGTATTAT+TGG | + | chr7_4:40788439-40788458 | Msa1153770:intron | 25.0% |
| ! | ATATTGAGACAGAAGATATT+TGG | + | chr7_4:40788537-40788556 | Msa1153770:three_prime_UTR | 25.0% |
| ! | ATATATTTAAGAGGCTGAAA+AGG | + | chr7_4:40788657-40788676 | Msa1153770:three_prime_UTR | 25.0% |
| ! | AAGAACCCTACTTAAAATTA+AGG | - | chr7_4:40788745-40788764 | None:intergenic | 25.0% |
| !! | TATGAGGTCTTTGATATTTT+TGG | + | chr7_4:40788926-40788945 | Msa1153770:three_prime_UTR | 25.0% |
| !! | ATGAGGTCTTTGATATTTTT+GGG | + | chr7_4:40788927-40788946 | Msa1153770:three_prime_UTR | 25.0% |
| ! | TGTATACTATTACATATGGT+GGG | - | chr7_4:40789027-40789046 | None:intergenic | 25.0% |
| ! | ATGTATACTATTACATATGG+TGG | - | chr7_4:40789028-40789047 | None:intergenic | 25.0% |
| ! | TATAATGTCCATGAAAGAAA+GGG | - | chr7_4:40789080-40789099 | None:intergenic | 25.0% |
| AATGAAGGTAAAAACAGGTT+GGG | - | chr7_4:40784041-40784060 | None:intergenic | 30.0% | |
| ! | TGAATGAAGAAGAGTTTGTT+TGG | - | chr7_4:40784206-40784225 | None:intergenic | 30.0% |
| GAAATTGGAGTTGAAATGAA+GGG | - | chr7_4:40784232-40784251 | None:intergenic | 30.0% | |
| AGAAATTGGAGTTGAAATGA+AGG | - | chr7_4:40784233-40784252 | None:intergenic | 30.0% | |
| !! | TTCAAAAGGGTATTTAGATC+TGG | - | chr7_4:40784358-40784377 | None:intergenic | 30.0% |
| TTATTGGATGATTAGAGATC+TGG | + | chr7_4:40784480-40784499 | Msa1153770:intron | 30.0% | |
| TATTGGATGATTAGAGATCT+GGG | + | chr7_4:40784481-40784500 | Msa1153770:intron | 30.0% | |
| !! | GTACTGATTAATGTGGAATA+TGG | + | chr7_4:40784537-40784556 | Msa1153770:intron | 30.0% |
| !! | CTGGTTTGGATAACTAAATA+AGG | - | chr7_4:40784947-40784966 | None:intergenic | 30.0% |
| TACTCTCAATATCATACATG+GGG | - | chr7_4:40784982-40785001 | None:intergenic | 30.0% | |
| GTACTCTCAATATCATACAT+GGG | - | chr7_4:40784983-40785002 | None:intergenic | 30.0% | |
| AGTACTCTCAATATCATACA+TGG | - | chr7_4:40784984-40785003 | None:intergenic | 30.0% | |
| AATTGACAAATACGGAAAAC+AGG | - | chr7_4:40785159-40785178 | None:intergenic | 30.0% | |
| ! | ACTGATAACTGCTCTTTTTA+AGG | + | chr7_4:40785206-40785225 | Msa1153770:intron | 30.0% |
| ! | CTGATAACTGCTCTTTTTAA+GGG | + | chr7_4:40785207-40785226 | Msa1153770:intron | 30.0% |
| !! | TGATAACTGCTCTTTTTAAG+GGG | + | chr7_4:40785208-40785227 | Msa1153770:intron | 30.0% |
| !! | GAGAGTATTTATATTCCAGT+TGG | + | chr7_4:40785300-40785319 | Msa1153770:intron | 30.0% |
| TATTGTGTCAACTGTCAATT+TGG | + | chr7_4:40785536-40785555 | Msa1153770:intron | 30.0% | |
| TGAAAAACAAAACTTGCCTT+GGG | - | chr7_4:40785618-40785637 | None:intergenic | 30.0% | |
| TTGAAAAACAAAACTTGCCT+TGG | - | chr7_4:40785619-40785638 | None:intergenic | 30.0% | |
| !! | ACTTGGTTTTTGTTTAGTTG+TGG | + | chr7_4:40785704-40785723 | Msa1153770:intron | 30.0% |
| !! | TTTTGTTTAGTTGTGGAGTT+TGG | + | chr7_4:40785711-40785730 | Msa1153770:intron | 30.0% |
| ! | AAAAAAGTGTAGTGCATAAG+TGG | - | chr7_4:40785783-40785802 | None:intergenic | 30.0% |
| !! | AAAATAAGTGCCGTTGTTTT+TGG | - | chr7_4:40785950-40785969 | None:intergenic | 30.0% |
| ! | TTGTACTTGGTTGTTTGTTT+TGG | + | chr7_4:40786060-40786079 | Msa1153770:intron | 30.0% |
| TGAAAGGACTGTAATGATTA+TGG | + | chr7_4:40786203-40786222 | Msa1153770:intron | 30.0% | |
| TAATGATTATGGTCAGAGAT+AGG | + | chr7_4:40786214-40786233 | Msa1153770:intron | 30.0% | |
| GCATAGATACTATGTTAAGA+GGG | + | chr7_4:40786453-40786472 | Msa1153770:intron | 30.0% | |
| ! | ACTATGTTAAGAGGGTATAA+TGG | + | chr7_4:40786461-40786480 | Msa1153770:intron | 30.0% |
| !!! | ATTGTTTACTGCTTTTTCTG+AGG | + | chr7_4:40786552-40786571 | Msa1153770:intron | 30.0% |
| !!! | TTGTTTACTGCTTTTTCTGA+GGG | + | chr7_4:40786553-40786572 | Msa1153770:intron | 30.0% |
| ! | TTTAAGCATGTTGCTTGTTA+TGG | + | chr7_4:40786607-40786626 | Msa1153770:intron | 30.0% |
| !! | TTAAGCATGTTGCTTGTTAT+GGG | + | chr7_4:40786608-40786627 | Msa1153770:intron | 30.0% |
| !!! | AATGCTTTTTTGATTGCCAT+TGG | + | chr7_4:40786639-40786658 | Msa1153770:intron | 30.0% |
| GAGAAACTTCAATAGTACAA+AGG | - | chr7_4:40786756-40786775 | None:intergenic | 30.0% | |
| CTTAAACCAGCAATGATATT+TGG | + | chr7_4:40786864-40786883 | Msa1153770:intron | 30.0% | |
| TAATTCTAGCATACTGAACA+AGG | - | chr7_4:40786956-40786975 | None:intergenic | 30.0% | |
| AAGTAGTACCTTAAACTTAG+CGG | - | chr7_4:40786997-40787016 | None:intergenic | 30.0% | |
| ! | TTCCTTTTGTATTGTGCTTT+AGG | + | chr7_4:40787115-40787134 | Msa1153770:intron | 30.0% |
| ATCCTAAAGCACAATACAAA+AGG | - | chr7_4:40787120-40787139 | None:intergenic | 30.0% | |
| TTATTTCCTCAAATTTGCCA+GGG | - | chr7_4:40787267-40787286 | None:intergenic | 30.0% | |
| ATTATTTCCTCAAATTTGCC+AGG | - | chr7_4:40787268-40787287 | None:intergenic | 30.0% | |
| ACTTCAGGTATATAATCCAA+GGG | - | chr7_4:40787338-40787357 | None:intergenic | 30.0% | |
| TCTGTAAAATACTAGACTTC+AGG | - | chr7_4:40787353-40787372 | None:intergenic | 30.0% | |
| AATCTGGATTTGTGATTGTT+TGG | - | chr7_4:40787466-40787485 | None:intergenic | 30.0% | |
| TTAAAATTCAAACTGGAGTG+GGG | + | chr7_4:40787585-40787604 | Msa1153770:intron | 30.0% | |
| GGTACAAGTATAGATATTGA+TGG | + | chr7_4:40787636-40787655 | Msa1153770:intron | 30.0% | |
| AAGTATAGATATTGATGGAG+AGG | + | chr7_4:40787641-40787660 | Msa1153770:intron | 30.0% | |
| AGTATAGATATTGATGGAGA+GGG | + | chr7_4:40787642-40787661 | Msa1153770:intron | 30.0% | |
| GTATTGCTTATATTCGTATC+TGG | + | chr7_4:40787829-40787848 | Msa1153770:CDS | 30.0% | |
| ! | ATATCCACTACCTTTTCAAT+TGG | + | chr7_4:40788060-40788079 | Msa1153770:intron | 30.0% |
| ATATCCAATGCCAATTGAAA+AGG | - | chr7_4:40788073-40788092 | None:intergenic | 30.0% | |
| ATGTTGTAATTACTGGACTA+GGG | + | chr7_4:40788095-40788114 | Msa1153770:intron | 30.0% | |
| TCGTAGTTTAATCCAACATT+CGG | + | chr7_4:40788335-40788354 | Msa1153770:intron | 30.0% | |
| !! | TGGCTACCTTAATTTTAAGT+AGG | + | chr7_4:40788736-40788755 | Msa1153770:three_prime_UTR | 30.0% |
| !! | GGCTACCTTAATTTTAAGTA+GGG | + | chr7_4:40788737-40788756 | Msa1153770:three_prime_UTR | 30.0% |
| !! | GCAAATATTAGTAGCTTGTT+TGG | - | chr7_4:40788860-40788879 | None:intergenic | 30.0% |
| !!! | TCTTTGATATTTTTGGGACT+TGG | + | chr7_4:40788933-40788952 | Msa1153770:three_prime_UTR | 30.0% |
| ! | TCGTGAAAACAACTTTTACA+TGG | - | chr7_4:40788990-40789009 | None:intergenic | 30.0% |
| GTATAATGTCCATGAAAGAA+AGG | - | chr7_4:40789081-40789100 | None:intergenic | 30.0% | |
| ATGAAGGTAAAAACAGGTTG+GGG | - | chr7_4:40784040-40784059 | None:intergenic | 35.0% | |
| GAATGAAGGTAAAAACAGGT+TGG | - | chr7_4:40784042-40784061 | None:intergenic | 35.0% | |
| GAGAGAATGAAGGTAAAAAC+AGG | - | chr7_4:40784046-40784065 | None:intergenic | 35.0% | |
| CTGTTGGATTATGAAGATAG+AGG | - | chr7_4:40784070-40784089 | None:intergenic | 35.0% | |
| !! | AGAAGAAATGATGGATCTGT+TGG | - | chr7_4:40784086-40784105 | None:intergenic | 35.0% |
| GATTGGAAGAGAAGAAATGA+TGG | - | chr7_4:40784095-40784114 | None:intergenic | 35.0% | |
| !!! | GGTTTTGGTACTGATTAATG+TGG | + | chr7_4:40784530-40784549 | Msa1153770:intron | 35.0% |
| CTGATTAATGTGGAATATGG+TGG | + | chr7_4:40784540-40784559 | Msa1153770:intron | 35.0% | |
| TAAGAGTGAATAGGAGCTTA+TGG | + | chr7_4:40784597-40784616 | Msa1153770:exon | 35.0% | |
| AAAGAAACTCACTGAAGAGT+AGG | - | chr7_4:40784685-40784704 | None:intergenic | 35.0% | |
| AAGCATGAGAAGATAATCTG+AGG | + | chr7_4:40784730-40784749 | Msa1153770:intron | 35.0% | |
| GTATAGATATGCCTTTGATG+TGG | + | chr7_4:40784921-40784940 | Msa1153770:intron | 35.0% | |
| ACTAAATAAGGCCACATCAA+AGG | - | chr7_4:40784935-40784954 | None:intergenic | 35.0% | |
| !! | TTTAGCTTGTCTCTTTAGCT+TGG | + | chr7_4:40785063-40785082 | Msa1153770:intron | 35.0% |
| TTTCCGTATTTGTCAATTGC+TGG | + | chr7_4:40785161-40785180 | Msa1153770:intron | 35.0% | |
| GAAGCTTAGTGAATGAGATT+TGG | + | chr7_4:40785255-40785274 | Msa1153770:intron | 35.0% | |
| ATTCCAGTTGGAATTACTTG+TGG | + | chr7_4:40785312-40785331 | Msa1153770:intron | 35.0% | |
| TGTCAATTTGGACTGTAAGT+TGG | + | chr7_4:40785548-40785567 | Msa1153770:intron | 35.0% | |
| AATTCCAATGAAGGTTGACT+TGG | + | chr7_4:40785687-40785706 | Msa1153770:intron | 35.0% | |
| AAAACCAAGTCAACCTTCAT+TGG | - | chr7_4:40785694-40785713 | None:intergenic | 35.0% | |
| TTTCACAACCAACTTGTACT+TGG | + | chr7_4:40786047-40786066 | Msa1153770:intron | 35.0% | |
| ACAAACAACCAAGTACAAGT+TGG | - | chr7_4:40786058-40786077 | None:intergenic | 35.0% | |
| !!! | TACTTGGTTGTTTGTTTTGG+TGG | + | chr7_4:40786063-40786082 | Msa1153770:intron | 35.0% |
| ! | CAAGAGTTGTCCTAGAATTT+TGG | + | chr7_4:40786106-40786125 | Msa1153770:intron | 35.0% |
| CTTAACATAGTATCTATGCC+TGG | - | chr7_4:40786452-40786471 | None:intergenic | 35.0% | |
| GGCATAGATACTATGTTAAG+AGG | + | chr7_4:40786452-40786471 | Msa1153770:intron | 35.0% | |
| !!! | CTTTTTTGATTGCCATTGGT+AGG | + | chr7_4:40786643-40786662 | Msa1153770:intron | 35.0% |
| TATTGAAGTTTCTCAAGTCG+AGG | + | chr7_4:40786762-40786781 | Msa1153770:intron | 35.0% | |
| ACAAGCTAAGATTAATGGCA+AGG | - | chr7_4:40786805-40786824 | None:intergenic | 35.0% | |
| GTTTAGCCAAATATCATTGC+TGG | - | chr7_4:40786873-40786892 | None:intergenic | 35.0% | |
| TGCTAGAATTATCCAGAAAC+TGG | + | chr7_4:40786965-40786984 | Msa1153770:CDS | 35.0% | |
| GCTAGAATTATCCAGAAACT+GGG | + | chr7_4:40786966-40786985 | Msa1153770:CDS | 35.0% | |
| AGTAGTACCTTAAACTTAGC+GGG | - | chr7_4:40786996-40787015 | None:intergenic | 35.0% | |
| TATTTCCTCAAATTTGCCAG+GGG | - | chr7_4:40787266-40787285 | None:intergenic | 35.0% | |
| CTTCAGGTATATAATCCAAG+GGG | - | chr7_4:40787337-40787356 | None:intergenic | 35.0% | |
| GACTTCAGGTATATAATCCA+AGG | - | chr7_4:40787339-40787358 | None:intergenic | 35.0% | |
| ! | AGTATCTAAAGTGTGCACTA+TGG | + | chr7_4:40787398-40787417 | Msa1153770:intron | 35.0% |
| ! | TTCATTCGATAGATTAGTCC+TGG | - | chr7_4:40787796-40787815 | None:intergenic | 35.0% |
| AGTACAATGAGGCAGAAAAA+TGG | - | chr7_4:40787921-40787940 | None:intergenic | 35.0% | |
| CACTGGATATATGTTCTCAA+AGG | - | chr7_4:40787995-40788014 | None:intergenic | 35.0% | |
| AGTTCAGGAAAAACCAACAA+TGG | + | chr7_4:40788022-40788041 | Msa1153770:CDS | 35.0% | |
| AATGCCAATTGAAAAGGTAG+TGG | - | chr7_4:40788067-40788086 | None:intergenic | 35.0% | |
| ! | ACTACCTTTTCAATTGGCAT+TGG | + | chr7_4:40788066-40788085 | Msa1153770:intron | 35.0% |
| CATGTTGTAATTACTGGACT+AGG | + | chr7_4:40788094-40788113 | Msa1153770:intron | 35.0% | |
| ! | TGAACTAGTCAGCATTTTCT+TGG | + | chr7_4:40788226-40788245 | Msa1153770:intron | 35.0% |
| TTGGATTAAACTACGACTGA+GGG | - | chr7_4:40788331-40788350 | None:intergenic | 35.0% | |
| TTAATCCAACATTCGGCATT+TGG | + | chr7_4:40788342-40788361 | Msa1153770:intron | 35.0% | |
| ACATCAAAATGGGTCCTTTA+AGG | - | chr7_4:40788386-40788405 | None:intergenic | 35.0% | |
| !! | ACCCATTTTGATGTGACAAT+GGG | + | chr7_4:40788392-40788411 | Msa1153770:intron | 35.0% |
| ACCCATTGTCACATCAAAAT+GGG | - | chr7_4:40788396-40788415 | None:intergenic | 35.0% | |
| TACCCATTGTCACATCAAAA+TGG | - | chr7_4:40788397-40788416 | None:intergenic | 35.0% | |
| TATCATCATGAGTAAGAGCA+AGG | + | chr7_4:40788467-40788486 | Msa1153770:three_prime_UTR | 35.0% | |
| ! | TGATTTTGTTCTGCTTGTGA+TGG | + | chr7_4:40788577-40788596 | Msa1153770:three_prime_UTR | 35.0% |
| ! | TTGAGTCCTTTTACTGTTGT+TGG | + | chr7_4:40788716-40788735 | Msa1153770:three_prime_UTR | 35.0% |
| TCATATGCGCTTAATGTATG+AGG | + | chr7_4:40788910-40788929 | Msa1153770:three_prime_UTR | 35.0% | |
| !!! | ATTTTTGGGACTTGGTTCAA+AGG | + | chr7_4:40788941-40788960 | Msa1153770:three_prime_UTR | 35.0% |
| AGATAGAGGAGAGAGAATGA+AGG | - | chr7_4:40784056-40784075 | None:intergenic | 40.0% | |
| AGAGAGATTGTGAATGCGAT+TGG | - | chr7_4:40784112-40784131 | None:intergenic | 40.0% | |
| ! | AAGAGTTTGTTTGGAGAGAG+CGG | - | chr7_4:40784197-40784216 | None:intergenic | 40.0% |
| TTGAGGGATCTGAGAGAAAT+TGG | - | chr7_4:40784247-40784266 | None:intergenic | 40.0% | |
| ! | GATCTATCAAAGCATCCTTC+TGG | + | chr7_4:40784652-40784671 | Msa1153770:CDS | 40.0% |
| CACATGTATCTGTGTCGTAT+TGG | + | chr7_4:40784885-40784904 | Msa1153770:intron | 40.0% | |
| ! | TATCTGTGTCGTATTGGTGT+CGG | + | chr7_4:40784891-40784910 | Msa1153770:intron | 40.0% |
| GCATGTGACTTTCCTATACA+TGG | + | chr7_4:40785128-40785147 | Msa1153770:intron | 40.0% | |
| AAACAGGACTGACCATGTAT+AGG | - | chr7_4:40785143-40785162 | None:intergenic | 40.0% | |
| GCTCCAGCAATTGACAAATA+CGG | - | chr7_4:40785167-40785186 | None:intergenic | 40.0% | |
| TCTCATTCACTAAGCTTCGT+TGG | - | chr7_4:40785253-40785272 | None:intergenic | 40.0% | |
| ACACCACAAGTAATTCCAAC+TGG | - | chr7_4:40785318-40785337 | None:intergenic | 40.0% | |
| ! | CTTGTGGTGTATTCTTTTCC+AGG | + | chr7_4:40785328-40785347 | Msa1153770:intron | 40.0% |
| CACACACAAGAACATAAACC+TGG | - | chr7_4:40785349-40785368 | None:intergenic | 40.0% | |
| TAATGCAGAGTACAATCCCA+AGG | + | chr7_4:40785599-40785618 | Msa1153770:intron | 40.0% | |
| TTGCACCACAATTCCAATGA+AGG | + | chr7_4:40785678-40785697 | Msa1153770:intron | 40.0% | |
| GTCAACCTTCATTGGAATTG+TGG | - | chr7_4:40785686-40785705 | None:intergenic | 40.0% | |
| GAAATCAGCACTGCAGAAAA+AGG | - | chr7_4:40785874-40785893 | None:intergenic | 40.0% | |
| ! | GTTTTGCTGCTGTGATTATG+AGG | + | chr7_4:40785915-40785934 | Msa1153770:CDS | 40.0% |
| !!! | ACGGCACTTATTTTTGCATC+CGG | + | chr7_4:40785956-40785975 | Msa1153770:CDS | 40.0% |
| !! | TATTTTTGCATCCGGCAAGA+TGG | + | chr7_4:40785964-40785983 | Msa1153770:CDS | 40.0% |
| AAAAGAACGTACCATCTTGC+CGG | - | chr7_4:40785978-40785997 | None:intergenic | 40.0% | |
| TTGTGATACAGGCCTTGATT+GGG | - | chr7_4:40786089-40786108 | None:intergenic | 40.0% | |
| TAGGACAACTCTTGTGATAC+AGG | - | chr7_4:40786100-40786119 | None:intergenic | 40.0% | |
| TTGGAGTCATTTAACCACTG+CGG | + | chr7_4:40786125-40786144 | Msa1153770:intron | 40.0% | |
| ! | CGTTGACTAAATCTCCATTC+GGG | - | chr7_4:40786263-40786282 | None:intergenic | 40.0% |
| !! | GCGTTGACTAAATCTCCATT+CGG | - | chr7_4:40786264-40786283 | None:intergenic | 40.0% |
| GGAGATTTAGTCAACGCATA+TGG | + | chr7_4:40786267-40786286 | Msa1153770:intron | 40.0% | |
| ATTGACCATCTAGCACTATG+AGG | - | chr7_4:40786316-40786335 | None:intergenic | 40.0% | |
| ATAGTGCTAGATGGTCAATG+AGG | + | chr7_4:40786317-40786336 | Msa1153770:intron | 40.0% | |
| TAGTGCTAGATGGTCAATGA+GGG | + | chr7_4:40786318-40786337 | Msa1153770:intron | 40.0% | |
| ATCACATATCTACAGATCCG+AGG | - | chr7_4:40786372-40786391 | None:intergenic | 40.0% | |
| TCGGATCTGTAGATATGTGA+TGG | + | chr7_4:40786371-40786390 | Msa1153770:intron | 40.0% | |
| !! | TATGTGATGGACGAATGCAA+AGG | + | chr7_4:40786384-40786403 | Msa1153770:intron | 40.0% |
| !! | ATGTGATGGACGAATGCAAA+GGG | + | chr7_4:40786385-40786404 | Msa1153770:intron | 40.0% |
| AGAACGGACGGAAGAAAAAA+AGG | + | chr7_4:40786417-40786436 | Msa1153770:intron | 40.0% | |
| !! | AAAAAAAGGTGTCTCTTGCC+AGG | + | chr7_4:40786431-40786450 | Msa1153770:intron | 40.0% |
| !! | CATTGCACAAGTACTGATAG+AGG | - | chr7_4:40786579-40786598 | None:intergenic | 40.0% |
| GAGTGAGGTGCAATCAAAAT+TGG | + | chr7_4:40786682-40786701 | Msa1153770:CDS | 40.0% | |
| TGCAATCAAAATTGGCAGCA+AGG | + | chr7_4:40786690-40786709 | Msa1153770:CDS | 40.0% | |
| ATCAAAATTGGCAGCAAGGA+AGG | + | chr7_4:40786694-40786713 | Msa1153770:CDS | 40.0% | |
| GTAGTACCTTAAACTTAGCG+GGG | - | chr7_4:40786995-40787014 | None:intergenic | 40.0% | |
| CTATTGCTTTCTATTTCCCC+TGG | + | chr7_4:40787247-40787266 | Msa1153770:intron | 40.0% | |
| TATTTCCCCTGGCAAATTTG+AGG | + | chr7_4:40787258-40787277 | Msa1153770:intron | 40.0% | |
| TTGTGATTGTTTGGCTGTCA+TGG | - | chr7_4:40787457-40787476 | None:intergenic | 40.0% | |
| TCAGTCACAATGCTTGTGTA+TGG | + | chr7_4:40787615-40787634 | Msa1153770:intron | 40.0% | |
| ! | ATGTTGAACTTGCTTGTTCC+TGG | + | chr7_4:40787746-40787765 | Msa1153770:intron | 40.0% |
| ! | TATGAACCAGAGTTGTTTCC+AGG | + | chr7_4:40787775-40787794 | Msa1153770:CDS | 40.0% |
| ATTAGTCCTGGAAACAACTC+TGG | - | chr7_4:40787784-40787803 | None:intergenic | 40.0% | |
| TCTGGGAAAATTGTTCTGAC+AGG | + | chr7_4:40787847-40787866 | Msa1153770:CDS | 40.0% | |
| GTATCACAAGACCAATACCT+TGG | - | chr7_4:40787875-40787894 | None:intergenic | 40.0% | |
| AACCAACAATGGTATGCACA+TGG | + | chr7_4:40788033-40788052 | Msa1153770:intron | 40.0% | |
| ! | AAGCTGACAGTTGATGTTGA+TGG | - | chr7_4:40788163-40788182 | None:intergenic | 40.0% |
| AGCTCAGTCCAATCAAATGT+TGG | + | chr7_4:40788274-40788293 | Msa1153770:intron | 40.0% | |
| ! | TCCAATCAAATGTTGGCTGT+TGG | + | chr7_4:40788281-40788300 | Msa1153770:intron | 40.0% |
| TCCAACAGCCAACATTTGAT+TGG | - | chr7_4:40788285-40788304 | None:intergenic | 40.0% | |
| ! | AATGTTGGCTGTTGGATTAG+CGG | + | chr7_4:40788289-40788308 | Msa1153770:intron | 40.0% |
| GTTGGATTAAACTACGACTG+AGG | - | chr7_4:40788332-40788351 | None:intergenic | 40.0% | |
| !! | GACCCATTTTGATGTGACAA+TGG | + | chr7_4:40788391-40788410 | Msa1153770:intron | 40.0% |
| ! | TGAGTAAGAGCAAGGTTTTC+TGG | + | chr7_4:40788475-40788494 | Msa1153770:three_prime_UTR | 40.0% |
| AGGTAGCCAACAACAGTAAA+AGG | - | chr7_4:40788725-40788744 | None:intergenic | 40.0% | |
| GCGCATATGACAAAAGCTTA+TGG | - | chr7_4:40788900-40788919 | None:intergenic | 40.0% | |
| TGAGAGAGATGGAGTAAACT+TGG | - | chr7_4:40789057-40789076 | None:intergenic | 40.0% | |
| ! | AGAGTTTGTTTGGAGAGAGC+GGG | - | chr7_4:40784196-40784215 | None:intergenic | 45.0% |
| GCTTTGATAGATCCACAGGT+TGG | - | chr7_4:40784645-40784664 | None:intergenic | 45.0% | |
| GGATGCTTTGATAGATCCAC+AGG | - | chr7_4:40784649-40784668 | None:intergenic | 45.0% | |
| AGAGTAGGCACAATTCCAGA+AGG | - | chr7_4:40784670-40784689 | None:intergenic | 45.0% | |
| GGCATCACTAATAGCTGGTT+TGG | - | chr7_4:40784961-40784980 | None:intergenic | 45.0% | |
| GCTGGAGCATACAGTTTGAT+TGG | + | chr7_4:40785179-40785198 | Msa1153770:intron | 45.0% | |
| TATGCTCAATGTGCTTGACG+CGG | + | chr7_4:40785434-40785453 | Msa1153770:intron | 45.0% | |
| CTGCTGTGATTATGAGGATC+CGG | + | chr7_4:40785921-40785940 | Msa1153770:CDS | 45.0% | |
| TGCTGTGATTATGAGGATCC+GGG | + | chr7_4:40785922-40785941 | Msa1153770:CDS | 45.0% | |
| !!! | TTGTTTTGGTGGCCCAATCA+AGG | + | chr7_4:40786074-40786093 | Msa1153770:intron | 45.0% |
| CTTGTGATACAGGCCTTGAT+TGG | - | chr7_4:40786090-40786109 | None:intergenic | 45.0% | |
| TGGAGTCATTTAACCACTGC+GGG | + | chr7_4:40786126-40786145 | Msa1153770:intron | 45.0% | |
| TAGCTGAGAAGGTGATGTGA+TGG | + | chr7_4:40786154-40786173 | Msa1153770:intron | 45.0% | |
| ! | ATGGTTGTGTTGCTCTAGTG+AGG | + | chr7_4:40786286-40786305 | Msa1153770:intron | 45.0% |
| GTAGGAGGTGAAATGAACCT+CGG | + | chr7_4:40786352-40786371 | Msa1153770:intron | 45.0% | |
| !! | TGTGATGGACGAATGCAAAG+GGG | + | chr7_4:40786386-40786405 | Msa1153770:intron | 45.0% |
| CAAAGGGGAGAGAAACAGAA+CGG | + | chr7_4:40786401-40786420 | Msa1153770:intron | 45.0% | |
| GTGATGTCAAGTTCCCCATA+CGG | + | chr7_4:40787168-40787187 | Msa1153770:CDS | 45.0% | |
| !! | TACACTTGAGAAAGCACCGT+GGG | - | chr7_4:40787213-40787232 | None:intergenic | 45.0% |
| !! | TTACACTTGAGAAAGCACCG+TGG | - | chr7_4:40787214-40787233 | None:intergenic | 45.0% |
| ! | CTCTGGTTCATACTATCACC+AGG | - | chr7_4:40787767-40787786 | None:intergenic | 45.0% |
| AATTGTTCTGACAGGAGCCA+AGG | + | chr7_4:40787855-40787874 | Msa1153770:CDS | 45.0% | |
| ATCCAGTGCTTACTGAGTTC+AGG | + | chr7_4:40788007-40788026 | Msa1153770:CDS | 45.0% | |
| TTCCTGAACTCAGTAAGCAC+TGG | - | chr7_4:40788012-40788031 | None:intergenic | 45.0% | |
| AGCCATGTGCATACCATTGT+TGG | - | chr7_4:40788038-40788057 | None:intergenic | 45.0% | |
| TTTGATTGGACTGAGCTGCA+AGG | - | chr7_4:40788271-40788290 | None:intergenic | 45.0% | |
| TCTAGCCAAATGCCGAATGT+TGG | - | chr7_4:40788350-40788369 | None:intergenic | 45.0% | |
| TTTGGCTAGACTGATCTGGT+TGG | + | chr7_4:40788360-40788379 | Msa1153770:intron | 45.0% | |
| !! | ACTGATCTGGTTGGCCTTAA+AGG | + | chr7_4:40788369-40788388 | Msa1153770:intron | 45.0% |
| ! | TTGGGACTTGGTTCAAAGGT+AGG | + | chr7_4:40788945-40788964 | Msa1153770:intron | 45.0% |
| ATGGAGCAAGCATTCAGCAT+TGG | - | chr7_4:40788971-40788990 | None:intergenic | 45.0% | |
| GAAAGAAAGGGTGAGAGAGA+TGG | - | chr7_4:40789068-40789087 | None:intergenic | 45.0% | |
| CTCTCTCACCCTTTCTTTCA+TGG | + | chr7_4:40789069-40789088 | Msa1153770:three_prime_UTR | 45.0% | |
| TAGGAGCTTATGGCTGACCA+AGG | + | chr7_4:40784607-40784626 | Msa1153770:exon | 50.0% | |
| GCTTATGGCTGACCAAGGAT+TGG | + | chr7_4:40784612-40784631 | Msa1153770:exon | 50.0% | |
| ATGGCTGACCAAGGATTGGA+AGG | + | chr7_4:40784616-40784635 | Msa1153770:CDS | 50.0% | |
| TGGCTGACCAAGGATTGGAA+GGG | + | chr7_4:40784617-40784636 | Msa1153770:CDS | 50.0% | |
| ! | CATGGGGCATCACTAATAGC+TGG | - | chr7_4:40784966-40784985 | None:intergenic | 50.0% |
| GTTGTGGAGTTTGGTCTCCT+TGG | + | chr7_4:40785720-40785739 | Msa1153770:intron | 50.0% | |
| GGTCGATAGAAAGACTGCCA+AGG | - | chr7_4:40785740-40785759 | None:intergenic | 50.0% | |
| GATCCGGGAGCCAAAAACAA+CGG | + | chr7_4:40785937-40785956 | Msa1153770:CDS | 50.0% | |
| GGAGTCATTTAACCACTGCG+GGG | + | chr7_4:40786127-40786146 | Msa1153770:intron | 50.0% | |
| TGAGAAGGTGATGTGATGGC+TGG | + | chr7_4:40786158-40786177 | Msa1153770:intron | 50.0% | |
| GAGAAGGTGATGTGATGGCT+GGG | + | chr7_4:40786159-40786178 | Msa1153770:intron | 50.0% | |
| AGAAGGTGATGTGATGGCTG+GGG | + | chr7_4:40786160-40786179 | Msa1153770:intron | 50.0% | |
| TGCTAGATGGTCAATGAGGG+TGG | + | chr7_4:40786321-40786340 | Msa1153770:intron | 50.0% | |
| TGCCATTGGTAGGTCTGTAC+TGG | + | chr7_4:40786653-40786672 | Msa1153770:intron | 50.0% | |
| CTCCAGTACAGACCTACCAA+TGG | - | chr7_4:40786658-40786677 | None:intergenic | 50.0% | |
| CTGTACTGGAGCTAAGAGTG+AGG | + | chr7_4:40786667-40786686 | Msa1153770:CDS | 50.0% | |
| CAAGTCGAGGTTCAGTAGAC+TGG | + | chr7_4:40786775-40786794 | Msa1153770:intron | 50.0% | |
| AGCACCACTCATGTAGCGTT+GGG | - | chr7_4:40787081-40787100 | None:intergenic | 50.0% | |
| AAGCACCACTCATGTAGCGT+TGG | - | chr7_4:40787082-40787101 | None:intergenic | 50.0% | |
| GAGGGTCTTGCATATTCCCA+CGG | + | chr7_4:40787194-40787213 | Msa1153770:CDS | 50.0% | |
| GCTGTCATGGAAGTCAGGAT+TGG | - | chr7_4:40787444-40787463 | None:intergenic | 50.0% | |
| GTTTGGCTGTCATGGAAGTC+AGG | - | chr7_4:40787449-40787468 | None:intergenic | 50.0% | |
| TCTGACAGGAGCCAAGGTAT+TGG | + | chr7_4:40787861-40787880 | Msa1153770:intron | 50.0% | |
| GGCATTTGGCTAGACTGATC+TGG | + | chr7_4:40788356-40788375 | Msa1153770:intron | 50.0% | |
| !! | AGCAAGGTTTTCTGGCAGAG+AGG | + | chr7_4:40788483-40788502 | Msa1153770:three_prime_UTR | 50.0% |
| !! | TTTTCTGGCAGAGAGGAACG+TGG | + | chr7_4:40788490-40788509 | Msa1153770:three_prime_UTR | 50.0% |
| ! | CAGAGAGGAACGTGGATTGT+AGG | + | chr7_4:40788498-40788517 | Msa1153770:three_prime_UTR | 50.0% |
| ! | GTTGGCTCCCTTCCAATCCT+TGG | - | chr7_4:40784627-40784646 | None:intergenic | 55.0% |
| ATTGGAAGGGAGCCAACCTG+TGG | + | chr7_4:40784630-40784649 | Msa1153770:CDS | 55.0% | |
| !! | TCGTATTGGTGTCGGACACG+AGG | + | chr7_4:40784899-40784918 | Msa1153770:intron | 55.0% |
| !!! | GTGCCGTTGTTTTTGGCTCC+CGG | - | chr7_4:40785943-40785962 | None:intergenic | 55.0% |
| ! | ATCTCCATTCGGGAAGCACG+TGG | - | chr7_4:40786253-40786272 | None:intergenic | 55.0% |
| GCGAGCCTCATAGTGCTAGA+TGG | + | chr7_4:40786308-40786327 | Msa1153770:intron | 55.0% | |
| GATGGTCAATGAGGGTGGTG+TGG | + | chr7_4:40786326-40786345 | Msa1153770:intron | 55.0% | |
| GTCAATGAGGGTGGTGTGGT+TGG | + | chr7_4:40786330-40786349 | Msa1153770:intron | 55.0% | |
| ATGAGGGTGGTGTGGTTGGT+AGG | + | chr7_4:40786334-40786353 | Msa1153770:intron | 55.0% | |
| GGGGAGAGAAACAGAACGGA+CGG | + | chr7_4:40786405-40786424 | Msa1153770:intron | 55.0% | |
| GGGCTTCCCCGCTAAGTTTA+AGG | + | chr7_4:40786986-40787005 | Msa1153770:CDS | 55.0% | |
| ! | CCACTCATGTAGCGTTGGGT+GGG | - | chr7_4:40787077-40787096 | None:intergenic | 55.0% |
| ! | ACCACTCATGTAGCGTTGGG+TGG | - | chr7_4:40787078-40787097 | None:intergenic | 55.0% |
| TGTCAAGTTCCCCATACGGC+TGG | + | chr7_4:40787172-40787191 | Msa1153770:CDS | 55.0% | |
| AAGTTCCCCATACGGCTGGA+GGG | + | chr7_4:40787176-40787195 | Msa1153770:CDS | 55.0% | |
| GACTCTTAACGCTGTCCCCT+TGG | + | chr7_4:40787319-40787338 | Msa1153770:intron | 55.0% | |
| ! | TGCGGGGTGACTAGCTGAGA+AGG | + | chr7_4:40786143-40786162 | Msa1153770:intron | 60.0% |
| AGGTGATGTGATGGCTGGGG+TGG | + | chr7_4:40786163-40786182 | Msa1153770:intron | 60.0% | |
| GATGTGATGGCTGGGGTGGT+TGG | + | chr7_4:40786167-40786186 | Msa1153770:intron | 60.0% | |
| !! | AGGGTGGTGTGGTTGGTAGG+AGG | + | chr7_4:40786337-40786356 | Msa1153770:intron | 60.0% |
| TAGCGGGGAAGCCCAGTTTC+TGG | - | chr7_4:40786980-40786999 | None:intergenic | 60.0% | |
| CCCACCCAACGCTACATGAG+TGG | + | chr7_4:40787074-40787093 | Msa1153770:intron | 60.0% | |
| CAAGTTCCCCATACGGCTGG+AGG | + | chr7_4:40787175-40787194 | Msa1153770:CDS | 60.0% | |
| CAAGACCCTCCAGCCGTATG+GGG | - | chr7_4:40787184-40787203 | None:intergenic | 60.0% | |
| GCAAGACCCTCCAGCCGTAT+GGG | - | chr7_4:40787185-40787204 | None:intergenic | 60.0% | |
| TGCAAGACCCTCCAGCCGTA+TGG | - | chr7_4:40787186-40787205 | None:intergenic | 60.0% | |
| CTCAGCTAGTCACCCCGCAG+TGG | - | chr7_4:40786142-40786161 | None:intergenic | 65.0% | |
| GCTGCCACGTGCTTCCCGAA+TGG | + | chr7_4:40786246-40786265 | Msa1153770:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 40784027 | 40789113 | 40784027 | ID=Msa1153770;Name=Msa1153770 |
| chr7_4 | mRNA | 40784027 | 40789113 | 40784027 | ID=Msa1153770-mRNA-1;Parent=Msa1153770;Name=Msa1153770-mRNA-1;_AED=0.20;_eAED=0.20;_QI=332|0.90|0.91|1|0.54|0.5|12|582|173 |
| chr7_4 | exon | 40784027 | 40784323 | 40784027 | ID=Msa1153770-mRNA-1:exon:9874;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40784581 | 40784692 | 40784581 | ID=Msa1153770-mRNA-1:exon:9875;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40785533 | 40785539 | 40785533 | ID=Msa1153770-mRNA-1:exon:9876;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40785914 | 40785985 | 40785914 | ID=Msa1153770-mRNA-1:exon:9877;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40786665 | 40786715 | 40786665 | ID=Msa1153770-mRNA-1:exon:9878;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40786963 | 40787007 | 40786963 | ID=Msa1153770-mRNA-1:exon:9879;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40787137 | 40787229 | 40787137 | ID=Msa1153770-mRNA-1:exon:9880;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40787775 | 40787876 | 40787775 | ID=Msa1153770-mRNA-1:exon:9881;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40787970 | 40788043 | 40787970 | ID=Msa1153770-mRNA-1:exon:9882;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40788465 | 40788842 | 40788465 | ID=Msa1153770-mRNA-1:exon:9883;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40788886 | 40788961 | 40788886 | ID=Msa1153770-mRNA-1:exon:9884;Parent=Msa1153770-mRNA-1 |
| chr7_4 | exon | 40788985 | 40789113 | 40788985 | ID=Msa1153770-mRNA-1:exon:9885;Parent=Msa1153770-mRNA-1 |
| chr7_4 | five_prime_UTR | 40784027 | 40784323 | 40784027 | ID=Msa1153770-mRNA-1:five_prime_utr;Parent=Msa1153770-mRNA-1 |
| chr7_4 | five_prime_UTR | 40784581 | 40784615 | 40784581 | ID=Msa1153770-mRNA-1:five_prime_utr;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40784616 | 40784692 | 40784616 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40785533 | 40785539 | 40785533 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40785914 | 40785985 | 40785914 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40786665 | 40786715 | 40786665 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40786963 | 40787007 | 40786963 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40787137 | 40787229 | 40787137 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40787775 | 40787876 | 40787775 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40787970 | 40788043 | 40787970 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | CDS | 40788465 | 40788465 | 40788465 | ID=Msa1153770-mRNA-1:cds;Parent=Msa1153770-mRNA-1 |
| chr7_4 | three_prime_UTR | 40788466 | 40788842 | 40788466 | ID=Msa1153770-mRNA-1:three_prime_utr;Parent=Msa1153770-mRNA-1 |
| chr7_4 | three_prime_UTR | 40788886 | 40788961 | 40788886 | ID=Msa1153770-mRNA-1:three_prime_utr;Parent=Msa1153770-mRNA-1 |
| chr7_4 | three_prime_UTR | 40788985 | 40789113 | 40788985 | ID=Msa1153770-mRNA-1:three_prime_utr;Parent=Msa1153770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
