Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026250 | XP_013449229.1 | 86.500 | 200 | 0 | 1 | 1 | 173 | 1 | 200 | 1.08e-117 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026250 | sp|Q42808|TBP_SOYBN | 85.000 | 200 | 3 | 1 | 1 | 173 | 1 | 200 | 2.83e-118 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026250 | B7FMY1 | 86.500 | 200 | 0 | 1 | 1 | 173 | 1 | 200 | 5.18e-118 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1026250 | Msa1145100 | 0.910135 | 2.626704e-82 | -8.615850e-47 |
| Msa1026250 | Msa1153770 | 0.870307 | 1.610424e-66 | -8.615850e-47 |
| Msa1026250 | Msa1444560 | 0.856355 | 3.402390e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026250 | MtrunA17_Chr7g0244531 | 86.500 | 200 | 0 | 1 | 1 | 173 | 1 | 200 | 4.95e-121 | 340 |
| Msa1026250 | MtrunA17_Chr4g0013121 | 82.022 | 178 | 5 | 1 | 1 | 151 | 1 | 178 | 5.31e-99 | 283 |
| Msa1026250 | MtrunA17_Chr3g0110921 | 61.500 | 200 | 50 | 1 | 1 | 173 | 15 | 214 | 1.32e-77 | 231 |
| Msa1026250 | MtrunA17_Chr3g0111031 | 58.678 | 121 | 33 | 1 | 29 | 149 | 89 | 192 | 4.90e-38 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026250 | AT1G55520.2 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1026250 | AT1G55520.1 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1026250 | AT1G55520.4 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1026250 | AT3G13445.1 | 80.000 | 200 | 13 | 1 | 1 | 173 | 1 | 200 | 2.34e-111 | 315 |
| Msa1026250 | AT1G55520.3 | 80.226 | 177 | 8 | 1 | 1 | 150 | 1 | 177 | 2.84e-96 | 276 |
| Msa1026250 | AT3G13445.2 | 79.661 | 177 | 9 | 1 | 1 | 150 | 1 | 177 | 2.05e-95 | 275 |
Find 74 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTTCCCCGCTAAGTTTA+AGG | 0.162066 | 7_1:+57891757 | Msa1026250:CDS |
| TTGAGGGATCTGAGAGAAAT+TGG | 0.225121 | 7_1:-57889038 | None:intergenic |
| TAGCGGGGAAGCCCAGTTTC+TGG | 0.228240 | 7_1:-57891748 | None:intergenic |
| TTGTAATAAGGGGTATAAAA+AGG | 0.240480 | 7_1:-57888945 | None:intergenic |
| AAGAACCCTACTTAAAATTA+AGG | 0.244771 | 7_1:-57893537 | None:intergenic |
| TGAAGTGAGAATTTGTAATA+AGG | 0.258956 | 7_1:-57888957 | None:intergenic |
| GTATTGCTTATATTCGTATC+TGG | 0.259998 | 7_1:+57892600 | Msa1026250:CDS |
| ATATTGAGACAGAAGATATT+TGG | 0.277193 | 7_1:+57893308 | Msa1026250:three_prime_UTR |
| TGCTAGAATTATCCAGAAAC+TGG | 0.288731 | 7_1:+57891736 | Msa1026250:CDS |
| AGGTAGCCAACAACAGTAAA+AGG | 0.299090 | 7_1:-57893517 | None:intergenic |
| TATGAACCAGAGTTGTTTCC+AGG | 0.329714 | 7_1:+57892546 | Msa1026250:CDS |
| GAAGTGAGAATTTGTAATAA+GGG | 0.360756 | 7_1:-57888956 | None:intergenic |
| GATCTATCAAAGCATCCTTC+TGG | 0.372034 | 7_1:+57889446 | Msa1026250:CDS |
| GAGTGAGGTGCAATCAAAAT+TGG | 0.374093 | 7_1:+57891454 | Msa1026250:CDS |
| GAATATAAGCAATACTATCT+TGG | 0.376880 | 7_1:-57892592 | None:intergenic |
| TAAGAGTGAATAGGAGCTTA+TGG | 0.378139 | 7_1:+57889391 | Msa1026250:exon |
| ATCCAGTGCTTACTGAGTTC+AGG | 0.387503 | 7_1:+57892778 | Msa1026250:CDS |
| GTTGGCTCCCTTCCAATCCT+TGG | 0.414450 | 7_1:-57889418 | None:intergenic |
| TGAATGAAGAAGAGTGTGTT+TGG | 0.417642 | 7_1:-57888997 | None:intergenic |
| AGCCATGTGCATACCATTGT+TGG | 0.417991 | 7_1:-57892806 | None:intergenic |
| CAGAGAGGAACGTGGATTGT+AGG | 0.421347 | 7_1:+57893269 | Msa1026250:three_prime_UTR |
| CTGCTGTGATTATGAGGATC+CGG | 0.422520 | 7_1:+57890693 | Msa1026250:CDS |
| AGAAGAAATGATGGATCTGT+TGG | 0.437001 | 7_1:-57888877 | None:intergenic |
| TATACAAATTAAGAGTGAAT+AGG | 0.441761 | 7_1:+57889382 | Msa1026250:five_prime_UTR |
| AATATAAGCAATACTATCTT+GGG | 0.443178 | 7_1:-57892591 | None:intergenic |
| TCAGAAAATATATTTAAAAG+AGG | 0.444497 | 7_1:+57893421 | Msa1026250:three_prime_UTR |
| AAGAGTGTGTTTGGAGAGAG+CGG | 0.453797 | 7_1:-57888988 | None:intergenic |
| AAAAGAACGTACCATCTTGC+CGG | 0.456865 | 7_1:-57890747 | None:intergenic |
| ATCAAAATTGGCAGCAAGGA+AGG | 0.463520 | 7_1:+57891466 | Msa1026250:CDS |
| ATATTTAAAAGAGGCTGAAA+AGG | 0.466815 | 7_1:+57893430 | Msa1026250:three_prime_UTR |
| TATTGCTTATATTCGTATCT+GGG | 0.466922 | 7_1:+57892601 | Msa1026250:CDS |
| AGTAGTACCTTAAACTTAGC+GGG | 0.472811 | 7_1:-57891764 | None:intergenic |
| AGAAATTGGAGTTGAAATGA+AGG | 0.475515 | 7_1:-57889024 | None:intergenic |
| TTTAAGATTCAGAACATTGT+CGG | 0.475654 | 7_1:+57891911 | Msa1026250:CDS |
| TGCCATTGGTAGGTCTGTAC+TGG | 0.475952 | 7_1:+57891425 | Msa1026250:intron |
| TGCAAGACCCTCCAGCCGTA+TGG | 0.489380 | 7_1:-57891954 | None:intergenic |
| TTCATTCGATAGATTAGTCC+TGG | 0.490443 | 7_1:-57892564 | None:intergenic |
| TTCCTGAACTCAGTAAGCAC+TGG | 0.491804 | 7_1:-57892780 | None:intergenic |
| GCAAGACCCTCCAGCCGTAT+GGG | 0.496807 | 7_1:-57891953 | None:intergenic |
| GCTTATGGCTGACCAAGGAT+TGG | 0.510788 | 7_1:+57889406 | Msa1026250:exon |
| GGATGCTTTGATAGATCCAC+AGG | 0.531550 | 7_1:-57889440 | None:intergenic |
| AGAGAGATTGTGAATGCGAT+TGG | 0.539251 | 7_1:-57888903 | None:intergenic |
| TGTCAAGTTCCCCATACGGC+TGG | 0.541848 | 7_1:+57891943 | Msa1026250:CDS |
| AGAGTGTGTTTGGAGAGAGC+GGG | 0.543632 | 7_1:-57888987 | None:intergenic |
| CTGTTGGATTATGAAGATAG+AGG | 0.546558 | 7_1:-57888861 | None:intergenic |
| AAAGAAACTCACTGAAGAGT+AGG | 0.550288 | 7_1:-57889476 | None:intergenic |
| TCTGGGAAAATTGTTCTGAC+AGG | 0.552768 | 7_1:+57892618 | Msa1026250:CDS |
| ATTAGTCCTGGAAACAACTC+TGG | 0.559444 | 7_1:-57892552 | None:intergenic |
| ATGGCTGACCAAGGATTGGA+AGG | 0.560659 | 7_1:+57889410 | Msa1026250:CDS |
| TGCAATCAAAATTGGCAGCA+AGG | 0.561827 | 7_1:+57891462 | Msa1026250:CDS |
| AAGTGAGAATTTGTAATAAG+GGG | 0.563510 | 7_1:-57888955 | None:intergenic |
| GAAATTGGAGTTGAAATGAA+GGG | 0.565346 | 7_1:-57889023 | None:intergenic |
| AGATAGAGGAGAGAGAATGA+AGG | 0.566625 | 7_1:-57888847 | None:intergenic |
| CAAGTTCCCCATACGGCTGG+AGG | 0.572877 | 7_1:+57891946 | Msa1026250:CDS |
| GATTGGAAGAGAAGAAATGA+TGG | 0.579792 | 7_1:-57888886 | None:intergenic |
| GTGATGTCAAGTTCCCCATA+CGG | 0.581797 | 7_1:+57891939 | Msa1026250:CDS |
| AATTGTTCTGACAGGAGCCA+AGG | 0.589296 | 7_1:+57892626 | Msa1026250:CDS |
| AAGTAGTACCTTAAACTTAG+CGG | 0.590355 | 7_1:-57891765 | None:intergenic |
| CACTGGATATATGTTCTCAA+AGG | 0.592156 | 7_1:-57892763 | None:intergenic |
| TGCTGTGATTATGAGGATCC+GGG | 0.596602 | 7_1:+57890694 | Msa1026250:CDS |
| TATCATCATGAGTAAGAGCA+AGG | 0.599234 | 7_1:+57893238 | Msa1026250:three_prime_UTR |
| GAGGGTCTTGCATATTCCCA+CGG | 0.600585 | 7_1:+57891965 | Msa1026250:CDS |
| CAAGACCCTCCAGCCGTATG+GGG | 0.611024 | 7_1:-57891952 | None:intergenic |
| AAGTTCCCCATACGGCTGGA+GGG | 0.615249 | 7_1:+57891947 | Msa1026250:CDS |
| GCTTTGATAGATCCACAGGT+TGG | 0.629665 | 7_1:-57889436 | None:intergenic |
| TACACTTGAGAAAGCACCGT+GGG | 0.640895 | 7_1:-57891981 | None:intergenic |
| ATTGGAAGGGAGCCAACCTG+TGG | 0.653530 | 7_1:+57889424 | Msa1026250:CDS |
| GCTAGAATTATCCAGAAACT+GGG | 0.655602 | 7_1:+57891737 | Msa1026250:CDS |
| TGGCTGACCAAGGATTGGAA+GGG | 0.658521 | 7_1:+57889411 | Msa1026250:CDS |
| TAGGAGCTTATGGCTGACCA+AGG | 0.664090 | 7_1:+57889401 | Msa1026250:exon |
| GTAGTACCTTAAACTTAGCG+GGG | 0.665555 | 7_1:-57891763 | None:intergenic |
| AGAGTAGGCACAATTCCAGA+AGG | 0.669455 | 7_1:-57889461 | None:intergenic |
| CTGTACTGGAGCTAAGAGTG+AGG | 0.686066 | 7_1:+57891439 | Msa1026250:CDS |
| TTACACTTGAGAAAGCACCG+TGG | 0.825503 | 7_1:-57891982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAATGTTCATAA+TGG | + | chr7_1:57890072-57890091 | Msa1026250:intron | 10.0% |
| !! | TGATAAATATAAAATAAATC+TGG | - | chr7_1:57892253-57892272 | None:intergenic | 10.0% |
| !! | TATACTATATAAAAGAAATT+AGG | - | chr7_1:57892476-57892495 | None:intergenic | 10.0% |
| !! | GTAAAAATATAAAATTACAT+GGG | - | chr7_1:57892670-57892689 | None:intergenic | 10.0% |
| !!! | TTTTAATTTCAATTTTGTTT+AGG | + | chr7_1:57892719-57892738 | Msa1026250:intron | 10.0% |
| !!! | TTTTTGTATGAAATTTTTGA+GGG | - | chr7_1:57889057-57889076 | None:intergenic | 15.0% |
| !!! | TTTTTTGTATGAAATTTTTG+AGG | - | chr7_1:57889058-57889077 | None:intergenic | 15.0% |
| !!! | TTAAGAATTTTTGTTTGTTT+TGG | - | chr7_1:57889084-57889103 | None:intergenic | 15.0% |
| !!! | ATTCTTAATTTTCACTTTTA+AGG | + | chr7_1:57889096-57889115 | Msa1026250:five_prime_UTR | 15.0% |
| !! | ATTAGATGAAAATTTCAAAA+GGG | - | chr7_1:57889165-57889184 | None:intergenic | 15.0% |
| !! | AATTAGATGAAAATTTCAAA+AGG | - | chr7_1:57889166-57889185 | None:intergenic | 15.0% |
| !!! | GACAAAAAATTGTTTTTTTA+AGG | + | chr7_1:57889188-57889207 | Msa1026250:intron | 15.0% |
| !!! | CTTTGTTTTTTAATGATTAT+TGG | + | chr7_1:57889258-57889277 | Msa1026250:intron | 15.0% |
| !!! | TTGATTTTGTAATTAAGTTA+AGG | + | chr7_1:57889303-57889322 | Msa1026250:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | - | chr7_1:57889643-57889662 | None:intergenic | 15.0% |
| !!! | TAAAATTAACTCTTTTCTAA+TGG | + | chr7_1:57889816-57889835 | Msa1026250:intron | 15.0% |
| !!! | AAAATTAACTCTTTTCTAAT+GGG | + | chr7_1:57889817-57889836 | Msa1026250:intron | 15.0% |
| !!! | AAAAATGTGCTATTTATATT+TGG | + | chr7_1:57890279-57890298 | Msa1026250:intron | 15.0% |
| !!! | TGGAATTTAATTTTATTGAA+AGG | + | chr7_1:57890959-57890978 | Msa1026250:intron | 15.0% |
| !!! | TTTTATGCACAAAATATATT+GGG | - | chr7_1:57891265-57891284 | None:intergenic | 15.0% |
| !!! | TTTTTATGCACAAAATATAT+TGG | - | chr7_1:57891266-57891285 | None:intergenic | 15.0% |
| !!! | TAGTTACTTATATCTTTTTA+AGG | + | chr7_1:57892324-57892343 | Msa1026250:intron | 15.0% |
| !!! | AGTTACTTATATCTTTTTAA+GGG | + | chr7_1:57892325-57892344 | Msa1026250:intron | 15.0% |
| !! | GGTAAAAATATAAAATTACA+TGG | - | chr7_1:57892671-57892690 | None:intergenic | 15.0% |
| !! | TCAGAAAATATATTTAAAAG+AGG | + | chr7_1:57893421-57893440 | Msa1026250:three_prime_UTR | 15.0% |
| !!! | GTGATTTTAAAGAAGTATTA+CGG | - | chr7_1:57889130-57889149 | None:intergenic | 20.0% |
| !!! | TGATGTTTTTATAACCTAAT+TGG | + | chr7_1:57889228-57889247 | Msa1026250:intron | 20.0% |
| !! | AACAAAGAAAAAAACCAATT+AGG | - | chr7_1:57889245-57889264 | None:intergenic | 20.0% |
| !!! | TTGTAATTAAGTTAAGGTTT+TGG | + | chr7_1:57889309-57889328 | Msa1026250:intron | 20.0% |
| !! | TATACAAATTAAGAGTGAAT+AGG | + | chr7_1:57889382-57889401 | Msa1026250:five_prime_UTR | 20.0% |
| !!! | AAATTAACTCTTTTCTAATG+GGG | + | chr7_1:57889818-57889837 | Msa1026250:intron | 20.0% |
| !! | TTTATGCACAAAATATATTG+GGG | - | chr7_1:57891264-57891283 | None:intergenic | 20.0% |
| !! | TGTGCATAAAAATAAAAATG+AGG | + | chr7_1:57891274-57891293 | Msa1026250:intron | 20.0% |
| !! | AAAAAGATATAAGTAACTAC+TGG | - | chr7_1:57892323-57892342 | None:intergenic | 20.0% |
| !!! | TGAGTTTTTAAAATTCAAAC+TGG | + | chr7_1:57892349-57892368 | Msa1026250:intron | 20.0% |
| !! | AATATAAGCAATACTATCTT+GGG | - | chr7_1:57892594-57892613 | None:intergenic | 20.0% |
| !!! | ATTTTCTTGGTTTTGTATTA+TGG | + | chr7_1:57893010-57893029 | Msa1026250:intron | 20.0% |
| !! | TGTAATAAGGGGTATAAAAA+GGG | - | chr7_1:57888947-57888966 | None:intergenic | 25.0% |
| !! | TTGTAATAAGGGGTATAAAA+AGG | - | chr7_1:57888948-57888967 | None:intergenic | 25.0% |
| ! | AAGTGAGAATTTGTAATAAG+GGG | - | chr7_1:57888958-57888977 | None:intergenic | 25.0% |
| ! | GAAGTGAGAATTTGTAATAA+GGG | - | chr7_1:57888959-57888978 | None:intergenic | 25.0% |
| ! | TGAAGTGAGAATTTGTAATA+AGG | - | chr7_1:57888960-57888979 | None:intergenic | 25.0% |
| ! | TTCTTTATTACAAATGAGCA+TGG | - | chr7_1:57889574-57889593 | None:intergenic | 25.0% |
| !! | TAAAGAGACAAGCTAAATTT+TGG | - | chr7_1:57889854-57889873 | None:intergenic | 25.0% |
| !!! | ATACGAGTTTGTTGATAATT+CGG | + | chr7_1:57889883-57889902 | Msa1026250:intron | 25.0% |
| ! | CGTTGGTATAAAACTTTATT+GGG | - | chr7_1:57890030-57890049 | None:intergenic | 25.0% |
| ! | TCGTTGGTATAAAACTTTAT+TGG | - | chr7_1:57890031-57890050 | None:intergenic | 25.0% |
| ! | GTTTGTATCAATAGTAATAC+TGG | - | chr7_1:57890533-57890552 | None:intergenic | 25.0% |
| ! | TTAAATGACTCCAAAATTCT+AGG | - | chr7_1:57890891-57890910 | None:intergenic | 25.0% |
| ! | AGAAAAAGCAGTAAACAATT+TGG | - | chr7_1:57891323-57891342 | None:intergenic | 25.0% |
| ! | CAAAAACAAGCTAAGATTAA+TGG | - | chr7_1:57891582-57891601 | None:intergenic | 25.0% |
| !! | TTTAAGATTCAGAACATTGT+CGG | + | chr7_1:57891911-57891930 | Msa1026250:CDS | 25.0% |
| !!! | AAATTGTAGTGGCTATTTTA+AGG | - | chr7_1:57892293-57892312 | None:intergenic | 25.0% |
| ! | CTGGAAAAAAAAAATTGTAG+TGG | - | chr7_1:57892304-57892323 | None:intergenic | 25.0% |
| !!! | TTTTAAAATTCAAACTGGAG+TGG | + | chr7_1:57892354-57892373 | Msa1026250:intron | 25.0% |
| !! | TTTAAAATTCAAACTGGAGT+GGG | + | chr7_1:57892355-57892374 | Msa1026250:intron | 25.0% |
| ! | GAATATAAGCAATACTATCT+TGG | - | chr7_1:57892595-57892614 | None:intergenic | 25.0% |
| ! | TATTGCTTATATTCGTATCT+GGG | + | chr7_1:57892601-57892620 | Msa1026250:CDS | 25.0% |
| ! | AAAACATTAGTAGTACAATG+AGG | - | chr7_1:57892703-57892722 | None:intergenic | 25.0% |
| ! | GATATACATGTTGTAATTAC+TGG | + | chr7_1:57892859-57892878 | Msa1026250:intron | 25.0% |
| ! | AAGCAAAACAAAAGACAAAA+TGG | - | chr7_1:57892907-57892926 | None:intergenic | 25.0% |
| ! | TATCATGAGATACGTATTAT+TGG | + | chr7_1:57893210-57893229 | Msa1026250:intron | 25.0% |
| ! | ATATTGAGACAGAAGATATT+TGG | + | chr7_1:57893308-57893327 | Msa1026250:three_prime_UTR | 25.0% |
| ! | ATATTTAAAAGAGGCTGAAA+AGG | + | chr7_1:57893430-57893449 | Msa1026250:three_prime_UTR | 25.0% |
| ! | GACTCAACAATTTATCATTA+AGG | - | chr7_1:57893476-57893495 | None:intergenic | 25.0% |
| ! | AAGAACCCTACTTAAAATTA+AGG | - | chr7_1:57893540-57893559 | None:intergenic | 25.0% |
| AATGAAGGTAAAAACAGGTT+GGG | - | chr7_1:57888835-57888854 | None:intergenic | 30.0% | |
| GAAATTGGAGTTGAAATGAA+GGG | - | chr7_1:57889026-57889045 | None:intergenic | 30.0% | |
| AGAAATTGGAGTTGAAATGA+AGG | - | chr7_1:57889027-57889046 | None:intergenic | 30.0% | |
| !! | TTCAAAAGGGTATTTAGATC+TGG | - | chr7_1:57889152-57889171 | None:intergenic | 30.0% |
| TTATTGGATGATTAGAGATC+TGG | + | chr7_1:57889274-57889293 | Msa1026250:intron | 30.0% | |
| TATTGGATGATTAGAGATCT+GGG | + | chr7_1:57889275-57889294 | Msa1026250:intron | 30.0% | |
| !! | GTACTGATTAATGTGGAATA+TGG | + | chr7_1:57889331-57889350 | Msa1026250:intron | 30.0% |
| !! | CTGGTTTGGATAACTAAATA+AGG | - | chr7_1:57889741-57889760 | None:intergenic | 30.0% |
| TACTCTCAATATCATACATG+GGG | - | chr7_1:57889776-57889795 | None:intergenic | 30.0% | |
| GTACTCTCAATATCATACAT+GGG | - | chr7_1:57889777-57889796 | None:intergenic | 30.0% | |
| AGTACTCTCAATATCATACA+TGG | - | chr7_1:57889778-57889797 | None:intergenic | 30.0% | |
| AATTGACAAATACGGAAAAC+AGG | - | chr7_1:57889953-57889972 | None:intergenic | 30.0% | |
| ! | ACTGATAACTGCTCTTTTTA+AGG | + | chr7_1:57890000-57890019 | Msa1026250:intron | 30.0% |
| ! | CTGATAACTGCTCTTTTTAA+GGG | + | chr7_1:57890001-57890020 | Msa1026250:intron | 30.0% |
| !! | TGATAACTGCTCTTTTTAAG+GGG | + | chr7_1:57890002-57890021 | Msa1026250:intron | 30.0% |
| !! | GAGAGTATTTATATTCCAGT+TGG | + | chr7_1:57890094-57890113 | Msa1026250:intron | 30.0% |
| TATTGTGTCAACTGTCAATT+TGG | + | chr7_1:57890308-57890327 | Msa1026250:intron | 30.0% | |
| TGAAAAACAAAACTTGCCTT+GGG | - | chr7_1:57890390-57890409 | None:intergenic | 30.0% | |
| TTGAAAAACAAAACTTGCCT+TGG | - | chr7_1:57890391-57890410 | None:intergenic | 30.0% | |
| !! | ACTTGGTTTTTGTTTAGTTG+TGG | + | chr7_1:57890476-57890495 | Msa1026250:intron | 30.0% |
| !! | TTTTGTTTAGTTGTGGAGTT+TGG | + | chr7_1:57890483-57890502 | Msa1026250:intron | 30.0% |
| ! | AAAAAAGTGTAGTGCATAAG+TGG | - | chr7_1:57890555-57890574 | None:intergenic | 30.0% |
| !! | AAAATAAGTGCCGTTGTTTT+TGG | - | chr7_1:57890722-57890741 | None:intergenic | 30.0% |
| ! | TTGTACTTGGTTGTTTGTTT+TGG | + | chr7_1:57890832-57890851 | Msa1026250:intron | 30.0% |
| TGAAAGGACTGTAATGATTA+TGG | + | chr7_1:57890975-57890994 | Msa1026250:intron | 30.0% | |
| TAATGATTATGGTCAGAGAT+AGG | + | chr7_1:57890986-57891005 | Msa1026250:intron | 30.0% | |
| GCATAGATACTATGTTAAGA+GGG | + | chr7_1:57891225-57891244 | Msa1026250:intron | 30.0% | |
| ! | ACTATGTTAAGAGGGTATAA+TGG | + | chr7_1:57891233-57891252 | Msa1026250:intron | 30.0% |
| !!! | ATTGTTTACTGCTTTTTCTG+AGG | + | chr7_1:57891324-57891343 | Msa1026250:intron | 30.0% |
| !!! | TTGTTTACTGCTTTTTCTGA+GGG | + | chr7_1:57891325-57891344 | Msa1026250:intron | 30.0% |
| ! | TTTAAGCATGTTGCTTGTTA+TGG | + | chr7_1:57891379-57891398 | Msa1026250:intron | 30.0% |
| !! | TTAAGCATGTTGCTTGTTAT+GGG | + | chr7_1:57891380-57891399 | Msa1026250:intron | 30.0% |
| !!! | AATGCTTTTTTGATTGCCAT+TGG | + | chr7_1:57891411-57891430 | Msa1026250:intron | 30.0% |
| GAGAAACTTCAATAGTACAA+AGG | - | chr7_1:57891528-57891547 | None:intergenic | 30.0% | |
| CTTAAACCAGCAATGATATT+TGG | + | chr7_1:57891635-57891654 | Msa1026250:intron | 30.0% | |
| TAATTCTAGCATACTGAACA+AGG | - | chr7_1:57891727-57891746 | None:intergenic | 30.0% | |
| AAGTAGTACCTTAAACTTAG+CGG | - | chr7_1:57891768-57891787 | None:intergenic | 30.0% | |
| ! | TTCCTTTTGTATTGTGCTTT+AGG | + | chr7_1:57891886-57891905 | Msa1026250:intron | 30.0% |
| ATCCTAAAGCACAATACAAA+AGG | - | chr7_1:57891891-57891910 | None:intergenic | 30.0% | |
| ACTTCAGGTATATAATCCAA+GGG | - | chr7_1:57892109-57892128 | None:intergenic | 30.0% | |
| TCTGTAAAATACTAGACTTC+AGG | - | chr7_1:57892124-57892143 | None:intergenic | 30.0% | |
| AATCTGGATTTGTGATTGTT+TGG | - | chr7_1:57892237-57892256 | None:intergenic | 30.0% | |
| TTAAAATTCAAACTGGAGTG+GGG | + | chr7_1:57892356-57892375 | Msa1026250:intron | 30.0% | |
| GGTACATGTATAGATATTGA+TGG | + | chr7_1:57892407-57892426 | Msa1026250:intron | 30.0% | |
| ATGTATAGATATTGATGGAG+AGG | + | chr7_1:57892412-57892431 | Msa1026250:intron | 30.0% | |
| TGTATAGATATTGATGGAGA+GGG | + | chr7_1:57892413-57892432 | Msa1026250:intron | 30.0% | |
| GTATTGCTTATATTCGTATC+TGG | + | chr7_1:57892600-57892619 | Msa1026250:CDS | 30.0% | |
| ! | ATATCCACTACCTTTTCAAT+TGG | + | chr7_1:57892831-57892850 | Msa1026250:intron | 30.0% |
| ATATCCAATGCCAATTGAAA+AGG | - | chr7_1:57892844-57892863 | None:intergenic | 30.0% | |
| ATGTTGTAATTACTGGACTA+GGG | + | chr7_1:57892866-57892885 | Msa1026250:intron | 30.0% | |
| TCGTAGTTTAATCCAACATT+CGG | + | chr7_1:57893106-57893125 | Msa1026250:intron | 30.0% | |
| !! | TGGCTACCTTAATTTTAAGT+AGG | + | chr7_1:57893531-57893550 | Msa1026250:three_prime_UTR | 30.0% |
| !! | GGCTACCTTAATTTTAAGTA+GGG | + | chr7_1:57893532-57893551 | Msa1026250:three_prime_UTR | 30.0% |
| ATGAAGGTAAAAACAGGTTG+GGG | - | chr7_1:57888834-57888853 | None:intergenic | 35.0% | |
| GAATGAAGGTAAAAACAGGT+TGG | - | chr7_1:57888836-57888855 | None:intergenic | 35.0% | |
| GAGAGAATGAAGGTAAAAAC+AGG | - | chr7_1:57888840-57888859 | None:intergenic | 35.0% | |
| CTGTTGGATTATGAAGATAG+AGG | - | chr7_1:57888864-57888883 | None:intergenic | 35.0% | |
| !! | AGAAGAAATGATGGATCTGT+TGG | - | chr7_1:57888880-57888899 | None:intergenic | 35.0% |
| GATTGGAAGAGAAGAAATGA+TGG | - | chr7_1:57888889-57888908 | None:intergenic | 35.0% | |
| ! | TGAATGAAGAAGAGTGTGTT+TGG | - | chr7_1:57889000-57889019 | None:intergenic | 35.0% |
| !!! | GGTTTTGGTACTGATTAATG+TGG | + | chr7_1:57889324-57889343 | Msa1026250:intron | 35.0% |
| CTGATTAATGTGGAATATGG+TGG | + | chr7_1:57889334-57889353 | Msa1026250:intron | 35.0% | |
| TAAGAGTGAATAGGAGCTTA+TGG | + | chr7_1:57889391-57889410 | Msa1026250:exon | 35.0% | |
| AAAGAAACTCACTGAAGAGT+AGG | - | chr7_1:57889479-57889498 | None:intergenic | 35.0% | |
| AAGCATGAGAAGATAATCTG+AGG | + | chr7_1:57889524-57889543 | Msa1026250:intron | 35.0% | |
| GTATAGATATGCCTTTGATG+TGG | + | chr7_1:57889715-57889734 | Msa1026250:intron | 35.0% | |
| ACTAAATAAGGCCACATCAA+AGG | - | chr7_1:57889729-57889748 | None:intergenic | 35.0% | |
| !! | TTTAGCTTGTCTCTTTAGCT+TGG | + | chr7_1:57889857-57889876 | Msa1026250:intron | 35.0% |
| TTTCCGTATTTGTCAATTGC+TGG | + | chr7_1:57889955-57889974 | Msa1026250:intron | 35.0% | |
| GAAGCTTAGTGAATGAGATT+TGG | + | chr7_1:57890049-57890068 | Msa1026250:intron | 35.0% | |
| ATTCCAGTTGGAATTACTTG+TGG | + | chr7_1:57890106-57890125 | Msa1026250:intron | 35.0% | |
| TGTCAATTTGGACTGTAAGT+TGG | + | chr7_1:57890320-57890339 | Msa1026250:intron | 35.0% | |
| AATTCCAATGAAGGTTGACT+TGG | + | chr7_1:57890459-57890478 | Msa1026250:intron | 35.0% | |
| AAAACCAAGTCAACCTTCAT+TGG | - | chr7_1:57890466-57890485 | None:intergenic | 35.0% | |
| TTTCACAACCAACTTGTACT+TGG | + | chr7_1:57890819-57890838 | Msa1026250:intron | 35.0% | |
| ACAAACAACCAAGTACAAGT+TGG | - | chr7_1:57890830-57890849 | None:intergenic | 35.0% | |
| !!! | TACTTGGTTGTTTGTTTTGG+TGG | + | chr7_1:57890835-57890854 | Msa1026250:intron | 35.0% |
| ! | CAAGAGTTGTCCTAGAATTT+TGG | + | chr7_1:57890878-57890897 | Msa1026250:intron | 35.0% |
| AGAATGGACGGAAGAAAAAA+AGG | + | chr7_1:57891189-57891208 | Msa1026250:intron | 35.0% | |
| CTTAACATAGTATCTATGCC+TGG | - | chr7_1:57891224-57891243 | None:intergenic | 35.0% | |
| GGCATAGATACTATGTTAAG+AGG | + | chr7_1:57891224-57891243 | Msa1026250:intron | 35.0% | |
| !!! | CTTTTTTGATTGCCATTGGT+AGG | + | chr7_1:57891415-57891434 | Msa1026250:intron | 35.0% |
| TATTGAAGTTTCTCAAGTCG+AGG | + | chr7_1:57891534-57891553 | Msa1026250:intron | 35.0% | |
| ACAAGCTAAGATTAATGGCA+AGG | - | chr7_1:57891577-57891596 | None:intergenic | 35.0% | |
| GTTTAGCCAAATATCATTGC+TGG | - | chr7_1:57891644-57891663 | None:intergenic | 35.0% | |
| TGCTAGAATTATCCAGAAAC+TGG | + | chr7_1:57891736-57891755 | Msa1026250:CDS | 35.0% | |
| GCTAGAATTATCCAGAAACT+GGG | + | chr7_1:57891737-57891756 | Msa1026250:CDS | 35.0% | |
| AGTAGTACCTTAAACTTAGC+GGG | - | chr7_1:57891767-57891786 | None:intergenic | 35.0% | |
| TTATTTCCTCAAATTCGCCA+GGG | - | chr7_1:57892038-57892057 | None:intergenic | 35.0% | |
| ATTATTTCCTCAAATTCGCC+AGG | - | chr7_1:57892039-57892058 | None:intergenic | 35.0% | |
| CTTCAGGTATATAATCCAAG+GGG | - | chr7_1:57892108-57892127 | None:intergenic | 35.0% | |
| GACTTCAGGTATATAATCCA+AGG | - | chr7_1:57892110-57892129 | None:intergenic | 35.0% | |
| ! | AGTATCTAAAGTGTGCACTA+TGG | + | chr7_1:57892169-57892188 | Msa1026250:intron | 35.0% |
| ! | TTCATTCGATAGATTAGTCC+TGG | - | chr7_1:57892567-57892586 | None:intergenic | 35.0% |
| AGTACAATGAGGCAGAAAAA+TGG | - | chr7_1:57892692-57892711 | None:intergenic | 35.0% | |
| CACTGGATATATGTTCTCAA+AGG | - | chr7_1:57892766-57892785 | None:intergenic | 35.0% | |
| AGTTCAGGAAAAACCAACAA+TGG | + | chr7_1:57892793-57892812 | Msa1026250:CDS | 35.0% | |
| AATGCCAATTGAAAAGGTAG+TGG | - | chr7_1:57892838-57892857 | None:intergenic | 35.0% | |
| ! | ACTACCTTTTCAATTGGCAT+TGG | + | chr7_1:57892837-57892856 | Msa1026250:intron | 35.0% |
| CATGTTGTAATTACTGGACT+AGG | + | chr7_1:57892865-57892884 | Msa1026250:intron | 35.0% | |
| ! | TGAACTAGTCAGCATTTTCT+TGG | + | chr7_1:57892997-57893016 | Msa1026250:intron | 35.0% |
| TTGGATTAAACTACGACTGA+GGG | - | chr7_1:57893102-57893121 | None:intergenic | 35.0% | |
| TTAATCCAACATTCGGCATT+TGG | + | chr7_1:57893113-57893132 | Msa1026250:intron | 35.0% | |
| ACATCAAAATGGGTCCTTTA+AGG | - | chr7_1:57893157-57893176 | None:intergenic | 35.0% | |
| !! | ACCCATTTTGATGTGACAAT+GGG | + | chr7_1:57893163-57893182 | Msa1026250:intron | 35.0% |
| ACCCATTGTCACATCAAAAT+GGG | - | chr7_1:57893167-57893186 | None:intergenic | 35.0% | |
| TACCCATTGTCACATCAAAA+TGG | - | chr7_1:57893168-57893187 | None:intergenic | 35.0% | |
| TATCATCATGAGTAAGAGCA+AGG | + | chr7_1:57893238-57893257 | Msa1026250:three_prime_UTR | 35.0% | |
| ! | TGATTTTGTTCTGCTTGTGA+TGG | + | chr7_1:57893348-57893367 | Msa1026250:three_prime_UTR | 35.0% |
| ! | TTGAGTCCTTTTACTGTTGT+TGG | + | chr7_1:57893511-57893530 | Msa1026250:three_prime_UTR | 35.0% |
| AGATAGAGGAGAGAGAATGA+AGG | - | chr7_1:57888850-57888869 | None:intergenic | 40.0% | |
| AGAGAGATTGTGAATGCGAT+TGG | - | chr7_1:57888906-57888925 | None:intergenic | 40.0% | |
| TTGAGGGATCTGAGAGAAAT+TGG | - | chr7_1:57889041-57889060 | None:intergenic | 40.0% | |
| ! | GATCTATCAAAGCATCCTTC+TGG | + | chr7_1:57889446-57889465 | Msa1026250:CDS | 40.0% |
| CACATGTATCTGTGTCGTAT+TGG | + | chr7_1:57889679-57889698 | Msa1026250:intron | 40.0% | |
| ! | TATCTGTGTCGTATTGGTGT+CGG | + | chr7_1:57889685-57889704 | Msa1026250:intron | 40.0% |
| GCATGTGACTTTCCTATACA+TGG | + | chr7_1:57889922-57889941 | Msa1026250:intron | 40.0% | |
| AAACAGGACTGACCATGTAT+AGG | - | chr7_1:57889937-57889956 | None:intergenic | 40.0% | |
| GCTCCAGCAATTGACAAATA+CGG | - | chr7_1:57889961-57889980 | None:intergenic | 40.0% | |
| TCTCATTCACTAAGCTTCGT+TGG | - | chr7_1:57890047-57890066 | None:intergenic | 40.0% | |
| ACACCACAAGTAATTCCAAC+TGG | - | chr7_1:57890112-57890131 | None:intergenic | 40.0% | |
| ! | CTTGTGGTGTATTCTTTTCC+AGG | + | chr7_1:57890122-57890141 | Msa1026250:intron | 40.0% |
| CACACACAAGAACATAAACC+TGG | - | chr7_1:57890143-57890162 | None:intergenic | 40.0% | |
| TAATGCAGAGTACAATCCCA+AGG | + | chr7_1:57890371-57890390 | Msa1026250:intron | 40.0% | |
| TTGCACCACAATTCCAATGA+AGG | + | chr7_1:57890450-57890469 | Msa1026250:intron | 40.0% | |
| GTCAACCTTCATTGGAATTG+TGG | - | chr7_1:57890458-57890477 | None:intergenic | 40.0% | |
| GAAATCAGCACTGCAGAAAA+AGG | - | chr7_1:57890646-57890665 | None:intergenic | 40.0% | |
| ! | GTTTTGCTGCTGTGATTATG+AGG | + | chr7_1:57890687-57890706 | Msa1026250:CDS | 40.0% |
| !!! | ACGGCACTTATTTTTGCATC+CGG | + | chr7_1:57890728-57890747 | Msa1026250:CDS | 40.0% |
| !! | TATTTTTGCATCCGGCAAGA+TGG | + | chr7_1:57890736-57890755 | Msa1026250:CDS | 40.0% |
| AAAAGAACGTACCATCTTGC+CGG | - | chr7_1:57890750-57890769 | None:intergenic | 40.0% | |
| TTGTGATACAGGCCTTGATT+GGG | - | chr7_1:57890861-57890880 | None:intergenic | 40.0% | |
| TAGGACAACTCTTGTGATAC+AGG | - | chr7_1:57890872-57890891 | None:intergenic | 40.0% | |
| TTGGAGTCATTTAACCACTG+CGG | + | chr7_1:57890897-57890916 | Msa1026250:intron | 40.0% | |
| ! | CGTTGACTAAATCTCCATTC+GGG | - | chr7_1:57891035-57891054 | None:intergenic | 40.0% |
| !! | GCGTTGACTAAATCTCCATT+CGG | - | chr7_1:57891036-57891055 | None:intergenic | 40.0% |
| GGAGATTTAGTCAACGCATA+TGG | + | chr7_1:57891039-57891058 | Msa1026250:intron | 40.0% | |
| ATTGACCATCTAGCACTATG+AGG | - | chr7_1:57891088-57891107 | None:intergenic | 40.0% | |
| ATAGTGCTAGATGGTCAATG+AGG | + | chr7_1:57891089-57891108 | Msa1026250:intron | 40.0% | |
| TAGTGCTAGATGGTCAATGA+GGG | + | chr7_1:57891090-57891109 | Msa1026250:intron | 40.0% | |
| ATCACATATCTACAGATCCG+AGG | - | chr7_1:57891144-57891163 | None:intergenic | 40.0% | |
| TCGGATCTGTAGATATGTGA+TGG | + | chr7_1:57891143-57891162 | Msa1026250:intron | 40.0% | |
| !! | TATGTGATGGACGAATGCAA+AGG | + | chr7_1:57891156-57891175 | Msa1026250:intron | 40.0% |
| !! | ATGTGATGGACGAATGCAAA+GGG | + | chr7_1:57891157-57891176 | Msa1026250:intron | 40.0% |
| !! | AAAAAAAGGTGTCTCTTGCC+AGG | + | chr7_1:57891203-57891222 | Msa1026250:intron | 40.0% |
| !! | CATTGCACAAGTACTGATAG+AGG | - | chr7_1:57891351-57891370 | None:intergenic | 40.0% |
| GAGTGAGGTGCAATCAAAAT+TGG | + | chr7_1:57891454-57891473 | Msa1026250:CDS | 40.0% | |
| TGCAATCAAAATTGGCAGCA+AGG | + | chr7_1:57891462-57891481 | Msa1026250:CDS | 40.0% | |
| ATCAAAATTGGCAGCAAGGA+AGG | + | chr7_1:57891466-57891485 | Msa1026250:CDS | 40.0% | |
| GTAGTACCTTAAACTTAGCG+GGG | - | chr7_1:57891766-57891785 | None:intergenic | 40.0% | |
| CTATTGCTTTCTATTTCCCC+TGG | + | chr7_1:57892018-57892037 | Msa1026250:intron | 40.0% | |
| TATTTCCTCAAATTCGCCAG+GGG | - | chr7_1:57892037-57892056 | None:intergenic | 40.0% | |
| TTGTGATTGTTTGGCTGTCA+TGG | - | chr7_1:57892228-57892247 | None:intergenic | 40.0% | |
| TCAGTCACAATGCTTGTGTA+TGG | + | chr7_1:57892386-57892405 | Msa1026250:intron | 40.0% | |
| ! | ATGTTGAACTTGCTTGTTCC+TGG | + | chr7_1:57892517-57892536 | Msa1026250:intron | 40.0% |
| ! | TATGAACCAGAGTTGTTTCC+AGG | + | chr7_1:57892546-57892565 | Msa1026250:CDS | 40.0% |
| ATTAGTCCTGGAAACAACTC+TGG | - | chr7_1:57892555-57892574 | None:intergenic | 40.0% | |
| TCTGGGAAAATTGTTCTGAC+AGG | + | chr7_1:57892618-57892637 | Msa1026250:CDS | 40.0% | |
| GTATCACAAGACCAATACCT+TGG | - | chr7_1:57892646-57892665 | None:intergenic | 40.0% | |
| AACCAACAATGGTATGCACA+TGG | + | chr7_1:57892804-57892823 | Msa1026250:intron | 40.0% | |
| ! | AAGCTGACAGTTGATGTTGA+TGG | - | chr7_1:57892934-57892953 | None:intergenic | 40.0% |
| AGCTCAGTCCAATCAAATGT+TGG | + | chr7_1:57893045-57893064 | Msa1026250:intron | 40.0% | |
| ! | TCCAATCAAATGTTGGCTGT+TGG | + | chr7_1:57893052-57893071 | Msa1026250:intron | 40.0% |
| TCCAACAGCCAACATTTGAT+TGG | - | chr7_1:57893056-57893075 | None:intergenic | 40.0% | |
| ! | AATGTTGGCTGTTGGATTAG+CGG | + | chr7_1:57893060-57893079 | Msa1026250:intron | 40.0% |
| GTTGGATTAAACTACGACTG+AGG | - | chr7_1:57893103-57893122 | None:intergenic | 40.0% | |
| !! | GACCCATTTTGATGTGACAA+TGG | + | chr7_1:57893162-57893181 | Msa1026250:intron | 40.0% |
| ! | TGAGTAAGAGCAAGGTTTTC+TGG | + | chr7_1:57893246-57893265 | Msa1026250:three_prime_UTR | 40.0% |
| AGGTAGCCAACAACAGTAAA+AGG | - | chr7_1:57893520-57893539 | None:intergenic | 40.0% | |
| ! | AAGAGTGTGTTTGGAGAGAG+CGG | - | chr7_1:57888991-57889010 | None:intergenic | 45.0% |
| GCTTTGATAGATCCACAGGT+TGG | - | chr7_1:57889439-57889458 | None:intergenic | 45.0% | |
| GGATGCTTTGATAGATCCAC+AGG | - | chr7_1:57889443-57889462 | None:intergenic | 45.0% | |
| AGAGTAGGCACAATTCCAGA+AGG | - | chr7_1:57889464-57889483 | None:intergenic | 45.0% | |
| GGCATCACTAATAGCTGGTT+TGG | - | chr7_1:57889755-57889774 | None:intergenic | 45.0% | |
| GCTGGAGCATACAGTTTGAT+TGG | + | chr7_1:57889973-57889992 | Msa1026250:intron | 45.0% | |
| TATGCTCAATGTGCTTGACG+CGG | + | chr7_1:57890206-57890225 | Msa1026250:intron | 45.0% | |
| CTGCTGTGATTATGAGGATC+CGG | + | chr7_1:57890693-57890712 | Msa1026250:CDS | 45.0% | |
| TGCTGTGATTATGAGGATCC+GGG | + | chr7_1:57890694-57890713 | Msa1026250:CDS | 45.0% | |
| !!! | TTGTTTTGGTGGCCCAATCA+AGG | + | chr7_1:57890846-57890865 | Msa1026250:intron | 45.0% |
| CTTGTGATACAGGCCTTGAT+TGG | - | chr7_1:57890862-57890881 | None:intergenic | 45.0% | |
| TGGAGTCATTTAACCACTGC+GGG | + | chr7_1:57890898-57890917 | Msa1026250:intron | 45.0% | |
| TAGCTGAGAAGGTGATGTGA+TGG | + | chr7_1:57890926-57890945 | Msa1026250:intron | 45.0% | |
| ! | ATGGTTGTGTTGCTCTAGTG+AGG | + | chr7_1:57891058-57891077 | Msa1026250:intron | 45.0% |
| GTAGGAGGTGAAATGAACCT+CGG | + | chr7_1:57891124-57891143 | Msa1026250:intron | 45.0% | |
| !! | TGTGATGGACGAATGCAAAG+GGG | + | chr7_1:57891158-57891177 | Msa1026250:intron | 45.0% |
| CAAAGGGGAGAGAAACAGAA+TGG | + | chr7_1:57891173-57891192 | Msa1026250:intron | 45.0% | |
| GTGATGTCAAGTTCCCCATA+CGG | + | chr7_1:57891939-57891958 | Msa1026250:CDS | 45.0% | |
| !! | TACACTTGAGAAAGCACCGT+GGG | - | chr7_1:57891984-57892003 | None:intergenic | 45.0% |
| !! | TTACACTTGAGAAAGCACCG+TGG | - | chr7_1:57891985-57892004 | None:intergenic | 45.0% |
| TATTTCCCCTGGCGAATTTG+AGG | + | chr7_1:57892029-57892048 | Msa1026250:intron | 45.0% | |
| ! | CTCTGGTTCATACTATCACC+AGG | - | chr7_1:57892538-57892557 | None:intergenic | 45.0% |
| AATTGTTCTGACAGGAGCCA+AGG | + | chr7_1:57892626-57892645 | Msa1026250:CDS | 45.0% | |
| ATCCAGTGCTTACTGAGTTC+AGG | + | chr7_1:57892778-57892797 | Msa1026250:CDS | 45.0% | |
| TTCCTGAACTCAGTAAGCAC+TGG | - | chr7_1:57892783-57892802 | None:intergenic | 45.0% | |
| AGCCATGTGCATACCATTGT+TGG | - | chr7_1:57892809-57892828 | None:intergenic | 45.0% | |
| TTTGATTGGACTGAGCTGCA+AGG | - | chr7_1:57893042-57893061 | None:intergenic | 45.0% | |
| TCTAGCCAAATGCCGAATGT+TGG | - | chr7_1:57893121-57893140 | None:intergenic | 45.0% | |
| TTTGGCTAGACTGATCTGGT+TGG | + | chr7_1:57893131-57893150 | Msa1026250:intron | 45.0% | |
| !! | ACTGATCTGGTTGGCCTTAA+AGG | + | chr7_1:57893140-57893159 | Msa1026250:intron | 45.0% |
| AGAGTGTGTTTGGAGAGAGC+GGG | - | chr7_1:57888990-57889009 | None:intergenic | 50.0% | |
| TAGGAGCTTATGGCTGACCA+AGG | + | chr7_1:57889401-57889420 | Msa1026250:exon | 50.0% | |
| GCTTATGGCTGACCAAGGAT+TGG | + | chr7_1:57889406-57889425 | Msa1026250:exon | 50.0% | |
| ATGGCTGACCAAGGATTGGA+AGG | + | chr7_1:57889410-57889429 | Msa1026250:CDS | 50.0% | |
| TGGCTGACCAAGGATTGGAA+GGG | + | chr7_1:57889411-57889430 | Msa1026250:CDS | 50.0% | |
| ! | CATGGGGCATCACTAATAGC+TGG | - | chr7_1:57889760-57889779 | None:intergenic | 50.0% |
| GTTGTGGAGTTTGGTCTCCT+TGG | + | chr7_1:57890492-57890511 | Msa1026250:intron | 50.0% | |
| GGTCGATAGAAAGACTGCCA+AGG | - | chr7_1:57890512-57890531 | None:intergenic | 50.0% | |
| GATCCGGGAGCCAAAAACAA+CGG | + | chr7_1:57890709-57890728 | Msa1026250:CDS | 50.0% | |
| GGAGTCATTTAACCACTGCG+GGG | + | chr7_1:57890899-57890918 | Msa1026250:intron | 50.0% | |
| TGAGAAGGTGATGTGATGGC+TGG | + | chr7_1:57890930-57890949 | Msa1026250:intron | 50.0% | |
| GAGAAGGTGATGTGATGGCT+GGG | + | chr7_1:57890931-57890950 | Msa1026250:intron | 50.0% | |
| AGAAGGTGATGTGATGGCTG+GGG | + | chr7_1:57890932-57890951 | Msa1026250:intron | 50.0% | |
| TGCTAGATGGTCAATGAGGG+TGG | + | chr7_1:57891093-57891112 | Msa1026250:intron | 50.0% | |
| GGGGAGAGAAACAGAATGGA+CGG | + | chr7_1:57891177-57891196 | Msa1026250:intron | 50.0% | |
| TGCCATTGGTAGGTCTGTAC+TGG | + | chr7_1:57891425-57891444 | Msa1026250:intron | 50.0% | |
| CTCCAGTACAGACCTACCAA+TGG | - | chr7_1:57891430-57891449 | None:intergenic | 50.0% | |
| CTGTACTGGAGCTAAGAGTG+AGG | + | chr7_1:57891439-57891458 | Msa1026250:CDS | 50.0% | |
| CAAGTCGAGGTTCAGTAGAC+TGG | + | chr7_1:57891547-57891566 | Msa1026250:intron | 50.0% | |
| AGCACCACTCATGTAGCGTT+GGG | - | chr7_1:57891852-57891871 | None:intergenic | 50.0% | |
| AAGCACCACTCATGTAGCGT+TGG | - | chr7_1:57891853-57891872 | None:intergenic | 50.0% | |
| GAGGGTCTTGCATATTCCCA+CGG | + | chr7_1:57891965-57891984 | Msa1026250:CDS | 50.0% | |
| GCTGTCATGGAAGTCAGGAT+TGG | - | chr7_1:57892215-57892234 | None:intergenic | 50.0% | |
| GTTTGGCTGTCATGGAAGTC+AGG | - | chr7_1:57892220-57892239 | None:intergenic | 50.0% | |
| TCTGACAGGAGCCAAGGTAT+TGG | + | chr7_1:57892632-57892651 | Msa1026250:intron | 50.0% | |
| GGCATTTGGCTAGACTGATC+TGG | + | chr7_1:57893127-57893146 | Msa1026250:intron | 50.0% | |
| !! | AGCAAGGTTTTCTGGCAGAG+AGG | + | chr7_1:57893254-57893273 | Msa1026250:three_prime_UTR | 50.0% |
| !! | TTTTCTGGCAGAGAGGAACG+TGG | + | chr7_1:57893261-57893280 | Msa1026250:three_prime_UTR | 50.0% |
| ! | CAGAGAGGAACGTGGATTGT+AGG | + | chr7_1:57893269-57893288 | Msa1026250:three_prime_UTR | 50.0% |
| ! | GTTGGCTCCCTTCCAATCCT+TGG | - | chr7_1:57889421-57889440 | None:intergenic | 55.0% |
| ATTGGAAGGGAGCCAACCTG+TGG | + | chr7_1:57889424-57889443 | Msa1026250:CDS | 55.0% | |
| !! | TCGTATTGGTGTCGGACACG+AGG | + | chr7_1:57889693-57889712 | Msa1026250:intron | 55.0% |
| !!! | GTGCCGTTGTTTTTGGCTCC+CGG | - | chr7_1:57890715-57890734 | None:intergenic | 55.0% |
| ! | ATCTCCATTCGGGAAGCACG+TGG | - | chr7_1:57891025-57891044 | None:intergenic | 55.0% |
| GCGAGCCTCATAGTGCTAGA+TGG | + | chr7_1:57891080-57891099 | Msa1026250:intron | 55.0% | |
| GATGGTCAATGAGGGTGGTG+TGG | + | chr7_1:57891098-57891117 | Msa1026250:intron | 55.0% | |
| GTCAATGAGGGTGGTGTGGT+TGG | + | chr7_1:57891102-57891121 | Msa1026250:intron | 55.0% | |
| ATGAGGGTGGTGTGGTTGGT+AGG | + | chr7_1:57891106-57891125 | Msa1026250:intron | 55.0% | |
| GGGCTTCCCCGCTAAGTTTA+AGG | + | chr7_1:57891757-57891776 | Msa1026250:CDS | 55.0% | |
| ! | CCACTCATGTAGCGTTGGGT+GGG | - | chr7_1:57891848-57891867 | None:intergenic | 55.0% |
| ! | ACCACTCATGTAGCGTTGGG+TGG | - | chr7_1:57891849-57891868 | None:intergenic | 55.0% |
| TGTCAAGTTCCCCATACGGC+TGG | + | chr7_1:57891943-57891962 | Msa1026250:CDS | 55.0% | |
| AAGTTCCCCATACGGCTGGA+GGG | + | chr7_1:57891947-57891966 | Msa1026250:CDS | 55.0% | |
| GACTCTTAACGCTGTCCCCT+TGG | + | chr7_1:57892090-57892109 | Msa1026250:intron | 55.0% | |
| ! | TGCGGGGTGACTAGCTGAGA+AGG | + | chr7_1:57890915-57890934 | Msa1026250:intron | 60.0% |
| AGGTGATGTGATGGCTGGGG+TGG | + | chr7_1:57890935-57890954 | Msa1026250:intron | 60.0% | |
| GATGTGATGGCTGGGGTGGT+TGG | + | chr7_1:57890939-57890958 | Msa1026250:intron | 60.0% | |
| !! | AGGGTGGTGTGGTTGGTAGG+AGG | + | chr7_1:57891109-57891128 | Msa1026250:intron | 60.0% |
| TAGCGGGGAAGCCCAGTTTC+TGG | - | chr7_1:57891751-57891770 | None:intergenic | 60.0% | |
| CCCACCCAACGCTACATGAG+TGG | + | chr7_1:57891845-57891864 | Msa1026250:intron | 60.0% | |
| CAAGTTCCCCATACGGCTGG+AGG | + | chr7_1:57891946-57891965 | Msa1026250:CDS | 60.0% | |
| CAAGACCCTCCAGCCGTATG+GGG | - | chr7_1:57891955-57891974 | None:intergenic | 60.0% | |
| GCAAGACCCTCCAGCCGTAT+GGG | - | chr7_1:57891956-57891975 | None:intergenic | 60.0% | |
| TGCAAGACCCTCCAGCCGTA+TGG | - | chr7_1:57891957-57891976 | None:intergenic | 60.0% | |
| CTCAGCTAGTCACCCCGCAG+TGG | - | chr7_1:57890914-57890933 | None:intergenic | 65.0% | |
| GCTGCCACGTGCTTCCCGAA+TGG | + | chr7_1:57891018-57891037 | Msa1026250:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 57888821 | 57893602 | 57888821 | ID=Msa1026250;Name=Msa1026250 |
| chr7_1 | mRNA | 57888821 | 57893602 | 57888821 | ID=Msa1026250-mRNA-1;Parent=Msa1026250;Name=Msa1026250-mRNA-1;_AED=0.23;_eAED=0.23;_QI=332|0.9|0.90|1|0.6|0.54|11|344|173 |
| chr7_1 | exon | 57888821 | 57889117 | 57888821 | ID=Msa1026250-mRNA-1:exon:11594;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57889375 | 57889486 | 57889375 | ID=Msa1026250-mRNA-1:exon:11595;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57890305 | 57890311 | 57890305 | ID=Msa1026250-mRNA-1:exon:11596;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57890686 | 57890757 | 57890686 | ID=Msa1026250-mRNA-1:exon:11597;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57891437 | 57891487 | 57891437 | ID=Msa1026250-mRNA-1:exon:11598;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57891734 | 57891778 | 57891734 | ID=Msa1026250-mRNA-1:exon:11599;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57891908 | 57892000 | 57891908 | ID=Msa1026250-mRNA-1:exon:11600;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57892546 | 57892647 | 57892546 | ID=Msa1026250-mRNA-1:exon:11601;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57892741 | 57892814 | 57892741 | ID=Msa1026250-mRNA-1:exon:11602;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57893236 | 57893480 | 57893236 | ID=Msa1026250-mRNA-1:exon:11603;Parent=Msa1026250-mRNA-1 |
| chr7_1 | exon | 57893503 | 57893602 | 57893503 | ID=Msa1026250-mRNA-1:exon:11604;Parent=Msa1026250-mRNA-1 |
| chr7_1 | five_prime_UTR | 57888821 | 57889117 | 57888821 | ID=Msa1026250-mRNA-1:five_prime_utr;Parent=Msa1026250-mRNA-1 |
| chr7_1 | five_prime_UTR | 57889375 | 57889409 | 57889375 | ID=Msa1026250-mRNA-1:five_prime_utr;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57889410 | 57889486 | 57889410 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57890305 | 57890311 | 57890305 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57890686 | 57890757 | 57890686 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57891437 | 57891487 | 57891437 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57891734 | 57891778 | 57891734 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57891908 | 57892000 | 57891908 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57892546 | 57892647 | 57892546 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57892741 | 57892814 | 57892741 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | CDS | 57893236 | 57893236 | 57893236 | ID=Msa1026250-mRNA-1:cds;Parent=Msa1026250-mRNA-1 |
| chr7_1 | three_prime_UTR | 57893237 | 57893480 | 57893237 | ID=Msa1026250-mRNA-1:three_prime_utr;Parent=Msa1026250-mRNA-1 |
| chr7_1 | three_prime_UTR | 57893503 | 57893602 | 57893503 | ID=Msa1026250-mRNA-1:three_prime_utr;Parent=Msa1026250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
