AlfalfaGEDB | Msa1156010

M. sativa cultivar zhongmu-4 / Msa1156010

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156010	XP_003624053.1	96.958	263	8	0	311	573	229	491	0.0	530
Msa1156010	XP_003624053.1	97.959	294	6	0	19	312	195	488	0.0	595

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156010	sp\|Q3EDL4\|Y1154_ARATH	85.259	251	37	0	19	269	188	438	2.52e-160	469
Msa1156010	sp\|Q3EDL4\|Y1154_ARATH	82.949	217	37	0	311	527	222	438	2.52e-133	400

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156010	G7L6L4	96.958	263	8	0	311	573	229	491	0.0	530
Msa1156010	G7L6L4	97.959	294	6	0	19	312	195	488	0.0	595

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015390	Msa1156010	0.802097	6.594835e-49	-8.615850e-47
Msa1156010	Msa1156050	-0.807487	4.934994e-50	-8.615850e-47
Msa1156010	Msa1161800	0.806450	8.177780e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156010	MtrunA17_Chr7g0248491	97.959	294	6	0	19	312	195	488	0.0	595
Msa1156010	MtrunA17_Chr7g0248491	96.958	263	8	0	311	573	229	491	0.0	530
Msa1156010	MtrunA17_Chr8g0348451	81.017	295	55	1	19	312	178	472	5.66e-172	496
Msa1156010	MtrunA17_Chr8g0348451	78.544	261	55	1	311	570	212	472	6.97e-145	427
Msa1156010	MtrunA17_Chr5g0402071	81.200	250	47	0	19	268	201	450	1.04e-149	440
Msa1156010	MtrunA17_Chr5g0402071	79.630	216	44	0	311	526	235	450	1.55e-124	375
Msa1156010	MtrunA17_Chr3g0144551	75.299	251	62	0	19	269	168	418	6.81e-138	408
Msa1156010	MtrunA17_Chr3g0144551	66.135	251	79	2	278	527	173	418	7.97e-115	348
Msa1156010	MtrunA17_Chr4g0034931	73.307	251	67	0	19	269	174	424	1.61e-137	407
Msa1156010	MtrunA17_Chr4g0034931	68.304	224	71	0	304	527	201	424	1.75e-112	343

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156010	AT4G01330.1	79.505	283	55	2	19	300	196	476	3.81e-162	471
Msa1156010	AT4G01330.1	76.707	249	55	2	311	558	230	476	7.15e-135	401
Msa1156010	AT1G01540.2	85.259	251	37	0	19	269	188	438	2.56e-161	469
Msa1156010	AT1G01540.2	82.949	217	37	0	311	527	222	438	2.56e-134	400
Msa1156010	AT4G01330.2	79.225	284	55	2	19	300	196	477	2.70e-161	469
Msa1156010	AT4G01330.2	76.400	250	55	2	311	558	230	477	5.35e-134	399
Msa1156010	AT4G01330.3	86.235	247	34	0	19	265	196	442	1.19e-158	461
Msa1156010	AT4G01330.3	81.818	220	40	0	304	523	223	442	1.79e-131	392
Msa1156010	AT4G02630.1	72.535	284	75	2	19	301	196	477	2.62e-144	426
Msa1156010	AT4G02630.1	69.200	250	74	2	311	559	230	477	2.47e-118	359

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Find 175 sgRNAs with CRISPR-Local

Find 572 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGAGGTAGAAGCAAT+TGG	0.488915	7_4:-44200901	Msa1156010:CDS
AAATTGGGGTTGGTTACAAG+AGG	0.607874	7_4:+44190248	None:intergenic
AAATTTGAGTCCTCAAGCTC+TGG	0.464492	7_4:+44190507	None:intergenic
AAATTTGAGTCCTCAAGCTC+TGG	0.464492	7_4:+44199287	None:intergenic
AACATACATTATGGAATAAG+AGG	0.476476	7_4:+44190823	None:intergenic
AACATACATTATGGAATAAG+AGG	0.476476	7_4:+44199603	None:intergenic
AACTCCAAAGTTTCTGATTT+CGG	0.201571	7_4:-44200425	Msa1156010:CDS
AACTCCAAGGTTTCTGATTT+CGG	0.204899	7_4:-44191659	Msa1156010:CDS
AAGAGTGATGTTTATAGCTT+TGG	0.277407	7_4:-44191382	Msa1156010:CDS
AAGAGTGATGTTTATAGCTT+TGG	0.277407	7_4:-44200159	Msa1156010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAGACTTAAAGACAACA+AGG	+	chr7_4:44190514-44190533	None:intergenic	30.0%
ATATTTAGTTGGTTGCAAAC+GGG	+	chr7_4:44190785-44190804	None:intergenic	30.0%
GCAACCAACTAAATATATTC+TGG	-	chr7_4:44190789-44190808	Msa1156010:intron	30.0%
CTACCCAGAATATATTTAGT+TGG	+	chr7_4:44190796-44190815	None:intergenic	30.0%
CACTTAAATGATAACTCCTA+AGG	+	chr7_4:44190933-44190952	None:intergenic	30.0%
CTTAGGAGTTATCATTTAAG+TGG	-	chr7_4:44190931-44190950	Msa1156010:CDS	30.0%
TAGGAGTTATCATTTAAGTG+GGG	-	chr7_4:44190933-44190952	Msa1156010:CDS	30.0%
TGAGAAAGAATTCAAAGTAG+AGG	-	chr7_4:44191182-44191201	Msa1156010:intron	30.0%
TACGACACAAAAATCTTGTT+AGG	-	chr7_4:44191223-44191242	Msa1156010:intron	30.0%
GAAATGTAAGAGTTGAAACA+TGG	-	chr7_4:44191331-44191350	Msa1156010:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	44190208	44201910	44190208	ID=Msa1156010;Name=Msa1156010
chr7_4	mRNA	44190208	44201910	44190208	ID=Msa1156010-mRNA-1;Parent=Msa1156010;Name=Msa1156010-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.81\|0.66\|0.91\|1\|1\|12\|217\|573
chr7_4	exon	44190208	44190577	44190208	ID=Msa1156010-mRNA-1:exon:11250;Parent=Msa1156010-mRNA-1
chr7_4	exon	44190830	44191039	44190830	ID=Msa1156010-mRNA-1:exon:11249;Parent=Msa1156010-mRNA-1
chr7_4	exon	44191318	44191447	44191318	ID=Msa1156010-mRNA-1:exon:11248;Parent=Msa1156010-mRNA-1
chr7_4	exon	44191596	44191766	44191596	ID=Msa1156010-mRNA-1:exon:11247;Parent=Msa1156010-mRNA-1
chr7_4	exon	44191861	44191983	44191861	ID=Msa1156010-mRNA-1:exon:11246;Parent=Msa1156010-mRNA-1
chr7_4	exon	44199218	44199357	44199218	ID=Msa1156010-mRNA-1:exon:11245;Parent=Msa1156010-mRNA-1
chr7_4	exon	44199610	44199819	44199610	ID=Msa1156010-mRNA-1:exon:11244;Parent=Msa1156010-mRNA-1
chr7_4	exon	44200095	44200224	44200095	ID=Msa1156010-mRNA-1:exon:11243;Parent=Msa1156010-mRNA-1
chr7_4	exon	44200362	44200532	44200362	ID=Msa1156010-mRNA-1:exon:11242;Parent=Msa1156010-mRNA-1
chr7_4	exon	44200625	44200747	44200625	ID=Msa1156010-mRNA-1:exon:11241;Parent=Msa1156010-mRNA-1
chr7_4	exon	44200841	44200945	44200841	ID=Msa1156010-mRNA-1:exon:11240;Parent=Msa1156010-mRNA-1
chr7_4	exon	44201855	44201910	44201855	ID=Msa1156010-mRNA-1:exon:11239;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44201855	44201910	44201855	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44200841	44200945	44200841	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44200625	44200747	44200625	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44200362	44200532	44200362	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44200095	44200224	44200095	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44199610	44199819	44199610	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44199218	44199357	44199218	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44191861	44191983	44191861	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44191596	44191766	44191596	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44191318	44191447	44191318	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44190830	44191039	44190830	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	CDS	44190425	44190577	44190425	ID=Msa1156010-mRNA-1:cds;Parent=Msa1156010-mRNA-1
chr7_4	three_prime_UTR	44190208	44190424	44190208	ID=Msa1156010-mRNA-1:three_prime_utr;Parent=Msa1156010-mRNA-1

Gene Sequence

>Msa1156010

ATGGCCAACATTTTCACCCCCATTTCAGCCGTCAAAGGTGGGAAGAAGGATTTGAAGGGCCAAGCTGAGAAAGAATTCAAAGTAGAGGTAGAAGCAATTGGTCGAGTACGACACAAAAATCTTGTTAGGCTGCTTGGATATTGTGTTGAAGGGGCCTACAGGATGCTTGTGTATGAATATGTAGACAATGGCAATCTAGAACAATGGTTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACGTGGGAAATACGCATGAACGTTATATTGGGAACGGCAAGAGGATTGGCCTATCTACATGAGGGTCTTGAACCAAAGGTTGTTCACCGTGATGTGAAATCAAGCAACATCCTCCTCGATCGCCAATGGAACTCCAAAGTTTCTGATTTCGGGCTTGCCAAGCTTTTGAATTCCGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGATATGTTGCACCAGAATATGCATGCACTGGAATGCTGACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTAATCATGGAGCTTATTACTGGGAGAAGTCCCGTTGATTATGGTAGACCTCAAGGAGAGGTCAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATCGAAAAGCTGAGGAAGTAGTTGATCCTAAGCTACCTGAGTTGCCATCTTCAAAGGCTCTTAAACGCGCTCTGTTAATCGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACACGTGATTCACATGCTCGAGGCAGACGACCTCTTATTCCATAATGATCGCAAAACTGGGGGAGAGTCTTCGCGATCTCTTAATGAGTTTCAACCAGAGCTTGAGGACTCAAATTTGGATAAGAGAACAGATGAAGGAATCAGTGGTCAAAGTGAACATGGTAGTGGTAGAGATAATAATCATCAGATGCTTGTGTATGAATATGTAGACAATGGCAATCTAGAACAATGGTTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAACGTTATATTGGGAACAGCCAGAGGATTGGCCTATCTACATGAGGGTCTTGAACCAAAGGTTGTTCACCGAGATGTGAAATCAAGTAACATCCTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTCTTGAATTCCGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACTGGAATGCTGACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTAATCATGGAGCTTATTACTGGGAGAAGTCCTGTCGATTATGGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATCGAAAAGCTGAGGAAGTAGTTGATCCTAAGCTACCTGAGTTGCCATCTTCAAAGGCTCTTAAACGCGCTCTATTAATCGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACATGTGATTCACATGCTTGAGGCAGACGACCTCTTATTCCATAATGATCGCAAAACTGGGGGAGAGTCTTCGCGATCTCTTAATGAGTTTCAACCAGAGCTTGAGGACTCAAATTTGGATAAGAGAACAGATGAAGGAATCAGTGGTCAAAGTGAACATGGTAGTGGTAGAGATAATAATCATCAGTCTAGGAGATGA

Protein sequence

>Msa1156010

MANIFTPISAVKGGKKDLKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMELITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSLNEFQPELEDSNLDKRTDEGISGQSEHGSGRDNNHQMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMELITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSLNEFQPELEDSNLDKRTDEGISGQSEHGSGRDNNHQSRR*