Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156050 | XP_003624182.1 | 99.513 | 411 | 2 | 0 | 1 | 411 | 1 | 411 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156050 | sp|Q5ZL42|5MP1_CHICK | 31.807 | 415 | 274 | 4 | 1 | 410 | 1 | 411 | 3.40e-74 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156050 | G7KRJ1 | 99.513 | 411 | 2 | 0 | 1 | 411 | 1 | 411 | 0.0 | 833 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1058600 | Msa1156050 | 0.982612 | 1.528249e-155 | -8.615850e-47 |
| Msa1156010 | Msa1156050 | -0.807487 | 4.934994e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156050 | MtrunA17_Chr7g0249391 | 97.450 | 353 | 9 | 0 | 59 | 411 | 2 | 354 | 0.0 | 698 |
| Msa1156050 | MtrunA17_Chr7g0249381 | 100.000 | 68 | 0 | 0 | 1 | 68 | 1 | 68 | 2.34e-41 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156050 | AT5G36230.1 | 81.931 | 404 | 73 | 0 | 1 | 404 | 1 | 404 | 0.0 | 712 |
| Msa1156050 | AT5G36230.2 | 81.886 | 403 | 73 | 0 | 2 | 404 | 15 | 417 | 0.0 | 709 |
| Msa1156050 | AT1G65220.1 | 79.950 | 404 | 81 | 0 | 1 | 404 | 1 | 404 | 0.0 | 696 |
Find 125 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATAACCGACTTCTTTA+AGG | 0.164759 | 7_4:+44258900 | Msa1156050:CDS |
| CACTTGAACCCTTTGTTAAT+TGG | 0.169893 | 7_4:+44260942 | Msa1156050:CDS |
| AGTCTTTCTCTGAGCATTTC+AGG | 0.235027 | 7_4:+44259028 | Msa1156050:CDS |
| ATCCGCACAATCTCGGTTTC+AGG | 0.251126 | 7_4:-44260079 | None:intergenic |
| CTTTGGGGTTTGTTCCTTTA+CGG | 0.268125 | 7_4:-44260767 | None:intergenic |
| TGTTGCCTCATACTCTATTA+TGG | 0.300396 | 7_4:-44258626 | None:intergenic |
| TCATCGGGCTTGGTAGTTCC+AGG | 0.307660 | 7_4:-44258583 | None:intergenic |
| AAAACTGCTTACCTTCCTTT+GGG | 0.325625 | 7_4:-44260783 | None:intergenic |
| AAAAGTTGAAGATAATCTTT+TGG | 0.333496 | 7_4:+44258975 | Msa1156050:CDS |
| CTTGGATAATGCTGGTGATT+TGG | 0.342588 | 7_4:+44257742 | Msa1156050:CDS |
| CGCCGCGATGTTCCGTTTGC+GGG | 0.349627 | 7_4:-44257675 | None:intergenic |
| CTCTACTCGGTGATGATTGT+TGG | 0.355536 | 7_4:-44256665 | None:intergenic |
| CCTCATAAACCAAGACGAAT+TGG | 0.356220 | 7_4:-44256707 | None:intergenic |
| CCAATTCGTCTTGGTTTATG+AGG | 0.364479 | 7_4:+44256707 | Msa1156050:exon |
| TCTTATTGCAATTCTGAAAC+GGG | 0.365699 | 7_4:+44258951 | Msa1156050:CDS |
| CAGCATTATCCAAGTAAATC+TGG | 0.369100 | 7_4:-44257733 | None:intergenic |
| CTGAAGATACCATTCTTCAT+TGG | 0.370219 | 7_4:+44260742 | Msa1156050:CDS |
| TCTACTCGGTGATGATTGTT+GGG | 0.370975 | 7_4:-44256664 | None:intergenic |
| ATGGATGCTGTTCAGTGGTC+AGG | 0.372899 | 7_4:+44260118 | Msa1156050:CDS |
| CGAGATTGTGCGGATCTTAT+GGG | 0.373009 | 7_4:+44260087 | Msa1156050:CDS |
| GCTTTCTCTCAGAAGCTATC+TGG | 0.375172 | 7_4:+44258808 | Msa1156050:CDS |
| TATTGAGACTGTGAAGCTTC+GGG | 0.375344 | 7_4:+44260039 | Msa1156050:CDS |
| CCCGAGAGTGGGTTTCTCCT+TGG | 0.381454 | 7_4:-44257204 | None:intergenic |
| TATTAGATCTCTTTATGAAC+AGG | 0.384592 | 7_4:+44260710 | Msa1156050:CDS |
| TTATTGAGACTGTGAAGCTT+CGG | 0.397554 | 7_4:+44260038 | Msa1156050:CDS |
| ATCTTATTGCAATTCTGAAA+CGG | 0.407398 | 7_4:+44258950 | Msa1156050:CDS |
| CGAAGGACTGACCGCCTTAG+TGG | 0.415766 | 7_4:+44259922 | Msa1156050:CDS |
| CATATAATCTCTCATGTGTA+TGG | 0.418987 | 7_4:-44261184 | None:intergenic |
| TAAAGAGATCTAATAATCTC+AGG | 0.432817 | 7_4:-44260702 | None:intergenic |
| ACAGTAAAGAGCCATTATAA+AGG | 0.435840 | 7_4:-44261245 | None:intergenic |
| TGAACCCTTTGTTAATTGGC+TGG | 0.438818 | 7_4:+44260946 | Msa1156050:CDS |
| TTCTAAAAGTTACCTTGCGC+AGG | 0.440169 | 7_4:-44260171 | None:intergenic |
| TTATAATGGCTCTTTACTGT+TGG | 0.449581 | 7_4:+44261248 | Msa1156050:three_prime_UTR |
| CAATATCAAAGAAAGAGAAC+CGG | 0.453965 | 7_4:-44261052 | None:intergenic |
| TTACTCCATAATAGAGTATG+AGG | 0.462138 | 7_4:+44258621 | Msa1156050:CDS |
| TGCAGTGGTCCAGATTTACT+TGG | 0.462561 | 7_4:+44257724 | Msa1156050:CDS |
| CTTTCGATCCCAATTCGTCT+TGG | 0.463552 | 7_4:+44256698 | Msa1156050:five_prime_UTR |
| CGAATTGGGATCGAAAGATC+GGG | 0.466148 | 7_4:-44256692 | None:intergenic |
| CTTTGTTAATTGGCTGGAGG+AGG | 0.471043 | 7_4:+44260952 | Msa1156050:CDS |
| GCGAAGATTCCTCCAGTCCT+TGG | 0.473428 | 7_4:+44258735 | Msa1156050:CDS |
| TCAAGGTTCTTGATGAGAAA+CGG | 0.475661 | 7_4:-44258703 | None:intergenic |
| CTCATAAACCAAGACGAATT+GGG | 0.475794 | 7_4:-44256706 | None:intergenic |
| CACCAGTGGAAAACTTGAGC+TGG | 0.479827 | 7_4:+44260620 | Msa1156050:CDS |
| CAGATTTACTTGGATAATGC+TGG | 0.481155 | 7_4:+44257734 | Msa1156050:CDS |
| GGAAAATGAGAGGAAGAAGT+TGG | 0.488658 | 7_4:+44258768 | Msa1156050:CDS |
| ACGAATTGGGATCGAAAGAT+CGG | 0.493650 | 7_4:-44256693 | None:intergenic |
| AAATGTCAGAACTAGCCCTT+TGG | 0.495437 | 7_4:-44258881 | None:intergenic |
| TTTACGGAACCAATGAAGAA+TGG | 0.495521 | 7_4:-44260751 | None:intergenic |
| TCCAAGGAGAAACCCACTCT+CGG | 0.497510 | 7_4:+44257203 | Msa1156050:CDS |
| TCATACTCTATTATGGAGTA+AGG | 0.497993 | 7_4:-44258619 | None:intergenic |
| AGTGGTTGGAACACAGTCTC+CGG | 0.501491 | 7_4:-44258838 | None:intergenic |
| TCTTTATGAACAGGATGTGC+TGG | 0.504838 | 7_4:+44260719 | Msa1156050:CDS |
| ACTGCATCAGCAAATGCTGC+AGG | 0.510392 | 7_4:-44257707 | None:intergenic |
| ATTCTTCATTGGTTCCGTAA+AGG | 0.516452 | 7_4:+44260753 | Msa1156050:CDS |
| CCAAGGAGAAACCCACTCTC+GGG | 0.525442 | 7_4:+44257204 | Msa1156050:CDS |
| GGTTATCTTTAAGAAGTGGT+TGG | 0.526466 | 7_4:-44258852 | None:intergenic |
| CAAATACTCCTTAAAGAAGT+CGG | 0.527140 | 7_4:-44258908 | None:intergenic |
| TAATGAAAAGAAGATATTTG+AGG | 0.528032 | 7_4:+44259949 | Msa1156050:CDS |
| CCATAAGATCCGCACAATCT+CGG | 0.529098 | 7_4:-44260086 | None:intergenic |
| TTGTGTTTCTTGCAGCTCCA+AGG | 0.530041 | 7_4:+44257187 | Msa1156050:intron |
| AAGATAACCTTGTGGCCAAA+GGG | 0.531045 | 7_4:+44258866 | Msa1156050:CDS |
| TGCAAATGCAGCCCTGCGCA+AGG | 0.531308 | 7_4:+44260159 | Msa1156050:CDS |
| GACCTCAACTTCTCAAGATA+CGG | 0.533157 | 7_4:+44257907 | Msa1156050:CDS |
| GAACTAGCCCTTTGGCCACA+AGG | 0.538546 | 7_4:-44258873 | None:intergenic |
| TCCTCCAGCCAATTAACAAA+GGG | 0.539906 | 7_4:-44260950 | None:intergenic |
| TCTCATGAATTTGATGTGCC+TGG | 0.540781 | 7_4:+44261083 | Msa1156050:three_prime_UTR |
| AAAGATAACCTTGTGGCCAA+AGG | 0.542559 | 7_4:+44258865 | Msa1156050:CDS |
| ACAAGGTTATCTTTAAGAAG+TGG | 0.544733 | 7_4:-44258856 | None:intergenic |
| CGAAATAGATTATTAGTACC+AGG | 0.552432 | 7_4:-44261101 | None:intergenic |
| TGGATGCTGTTCAGTGGTCA+GGG | 0.553502 | 7_4:+44260119 | Msa1156050:CDS |
| TTGGCTGGAGGAGGCTGAAG+AGG | 0.559602 | 7_4:+44260961 | Msa1156050:CDS |
| CACCGTATCTTGAGAAGTTG+AGG | 0.561957 | 7_4:-44257909 | None:intergenic |
| CGCGGATTAAGACCCGCAAA+CGG | 0.562108 | 7_4:+44257663 | Msa1156050:CDS |
| TCATTAATTTGTCTTACGAT+CGG | 0.568345 | 7_4:+44261460 | Msa1156050:three_prime_UTR |
| GGAACTACCAAGCCCGATGA+GGG | 0.569765 | 7_4:+44258586 | Msa1156050:CDS |
| TGCAAGCACCACGGTACATG+AGG | 0.577827 | 7_4:-44261155 | None:intergenic |
| TTGAATACTTTCTGCACCAG+TGG | 0.578411 | 7_4:+44260606 | Msa1156050:CDS |
| TTTATTAGCTGTCTAACGCA+AGG | 0.580911 | 7_4:+44261304 | Msa1156050:three_prime_UTR |
| TGCAGCATTTGCTGATGCAG+TGG | 0.583776 | 7_4:+44257709 | Msa1156050:CDS |
| TGGTAGTTCCAGGTTGTGTG+CGG | 0.583923 | 7_4:-44258573 | None:intergenic |
| AATATCAAAGAAAGAGAACC+GGG | 0.584559 | 7_4:-44261051 | None:intergenic |
| AAAGAGATCTAATAATCTCA+GGG | 0.586643 | 7_4:-44260701 | None:intergenic |
| CTACTCGGTGATGATTGTTG+GGG | 0.587083 | 7_4:-44256663 | None:intergenic |
| GCAAATGCTGCAGGGTCCAG+AGG | 0.587237 | 7_4:-44257698 | None:intergenic |
| TTCTGTATGTAGATCACAGA+TGG | 0.589103 | 7_4:-44258664 | None:intergenic |
| GCTGGAGGAGGCTGAAGAGG+AGG | 0.590216 | 7_4:+44260964 | Msa1156050:CDS |
| AAACTGCTTACCTTCCTTTG+GGG | 0.590607 | 7_4:-44260782 | None:intergenic |
| ATGCTCAGAGAAAGACTCGT+TGG | 0.591713 | 7_4:-44259022 | None:intergenic |
| AGTACAGATGCAATGCTATG+AGG | 0.592013 | 7_4:+44260656 | Msa1156050:CDS |
| CTCCTCCAGCCAATTAACAA+AGG | 0.595041 | 7_4:-44260951 | None:intergenic |
| CTTATTGCAATTCTGAAACG+GGG | 0.596539 | 7_4:+44258952 | Msa1156050:CDS |
| ACTCTATTATGGAGTAAGGA+TGG | 0.598666 | 7_4:-44258615 | None:intergenic |
| GATATTTGAGGTGACACTCA+AGG | 0.598773 | 7_4:+44259961 | Msa1156050:CDS |
| GAAGCTATCTGGTCTCCCAC+CGG | 0.602610 | 7_4:+44258819 | Msa1156050:CDS |
| GGTTGGAACACAGTCTCCGG+TGG | 0.605569 | 7_4:-44258835 | None:intergenic |
| TCTAAAAGTTACCTTGCGCA+GGG | 0.606161 | 7_4:-44260170 | None:intergenic |
| ACCCTTTGTTAATTGGCTGG+AGG | 0.606550 | 7_4:+44260949 | Msa1156050:CDS |
| ATGAGAGATTATATGCTACA+TGG | 0.610280 | 7_4:+44261192 | Msa1156050:three_prime_UTR |
| AAGGAACAAACCCCAAAGGA+AGG | 0.612722 | 7_4:+44260772 | Msa1156050:CDS |
| TTACGATAAAGGTGAAAACA+TGG | 0.615139 | 7_4:+44260574 | Msa1156050:intron |
| TGCCTGAAACCGAGATTGTG+CGG | 0.618084 | 7_4:+44260077 | Msa1156050:CDS |
| TTCATTATACTCCACTAAGG+CGG | 0.628716 | 7_4:-44259933 | None:intergenic |
| TACTCGGTGATGATTGTTGG+GGG | 0.632957 | 7_4:-44256662 | None:intergenic |
| AAGATCGGGGAGTCTCTACT+CGG | 0.637025 | 7_4:-44256678 | None:intergenic |
| TGGAACTACCAAGCCCGATG+AGG | 0.639429 | 7_4:+44258585 | Msa1156050:CDS |
| GGGTTCAAGTGCCTTCACAA+AGG | 0.639968 | 7_4:-44260930 | None:intergenic |
| CTGCATCAGCAAATGCTGCA+GGG | 0.640670 | 7_4:-44257706 | None:intergenic |
| GTACAGGCAAACCTTTGTGA+AGG | 0.645045 | 7_4:+44260919 | Msa1156050:intron |
| TCTTAATCACCAGTGGCACG+CGG | 0.645729 | 7_4:+44257645 | Msa1156050:intron |
| ATCTGTGATCTACATACAGA+AGG | 0.646244 | 7_4:+44258666 | Msa1156050:CDS |
| TACGATAAAGGTGAAAACAT+GGG | 0.653706 | 7_4:+44260575 | Msa1156050:intron |
| AGGAGGAATGAATGTAGCGG+AGG | 0.657184 | 7_4:+44260981 | Msa1156050:exon |
| GAACTACCAAGCCCGATGAG+GGG | 0.657803 | 7_4:+44258587 | Msa1156050:CDS |
| GCAAGCACCACGGTACATGA+GGG | 0.661713 | 7_4:-44261154 | None:intergenic |
| GTTGGAACACAGTCTCCGGT+GGG | 0.671828 | 7_4:-44258834 | None:intergenic |
| CGTAAAGGAACAAACCCCAA+AGG | 0.672014 | 7_4:+44260768 | Msa1156050:CDS |
| AACAACACAGATAACAGAGG+AGG | 0.672429 | 7_4:+44260000 | Msa1156050:CDS |
| AAGAGGAGGAATGAATGTAG+CGG | 0.684370 | 7_4:+44260978 | Msa1156050:exon |
| GAATTGCAATAAGATCATCA+AGG | 0.697178 | 7_4:-44258942 | None:intergenic |
| GAATTGGGATCGAAAGATCG+GGG | 0.699765 | 7_4:-44256691 | None:intergenic |
| TTTAACAACACAGATAACAG+AGG | 0.703724 | 7_4:+44259997 | Msa1156050:CDS |
| TGGAAAACATGCAAGCACCA+CGG | 0.715493 | 7_4:-44261164 | None:intergenic |
| CACGGTACATGAGGGCACGG+CGG | 0.717138 | 7_4:-44261146 | None:intergenic |
| ACTTCTTAAAGATAACCTTG+TGG | 0.720062 | 7_4:+44258858 | Msa1156050:CDS |
| GACCCGCAAACGGAACATCG+CGG | 0.725384 | 7_4:+44257673 | Msa1156050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGATTATTTTCAGTTA+TGG | + | chr7_4:44256871-44256890 | Msa1156050:intron | 15.0% |
| !!! | TTTTGATTATTTTCAGTTAT+GGG | + | chr7_4:44256872-44256891 | Msa1156050:intron | 15.0% |
| !!! | TATAAATAATTTGTCATGAT+TGG | + | chr7_4:44257003-44257022 | Msa1156050:intron | 15.0% |
| !! | AGAGAATAAATTAATTAAGT+GGG | - | chr7_4:44257398-44257417 | None:intergenic | 15.0% |
| !! | ATTGAATGATTTATGTTTAT+AGG | + | chr7_4:44257855-44257874 | Msa1156050:intron | 15.0% |
| !! | TTCAAAACTTAAGTATTTAA+AGG | - | chr7_4:44258317-44258336 | None:intergenic | 15.0% |
| !!! | TTCAAAATGTTTTATATATC+AGG | + | chr7_4:44259097-44259116 | Msa1156050:intron | 15.0% |
| !!! | AAGTGAAATATTCTTTTAAA+AGG | + | chr7_4:44259289-44259308 | Msa1156050:intron | 15.0% |
| !!! | AGTGAAATATTCTTTTAAAA+GGG | + | chr7_4:44259290-44259309 | Msa1156050:intron | 15.0% |
| !!! | GTGATATTATTATTTTTGAA+TGG | + | chr7_4:44259776-44259795 | Msa1156050:intron | 15.0% |
| !!! | ATGTTTTTTTTCCTTTATAA+TGG | + | chr7_4:44261234-44261253 | Msa1156050:three_prime_UTR | 15.0% |
| !! | TCAAACAATAATCAACAAAA+AGG | - | chr7_4:44257136-44257155 | None:intergenic | 20.0% |
| !! | TCAATTATTTCACTAACATA+GGG | + | chr7_4:44257370-44257389 | Msa1156050:intron | 20.0% |
| !! | CAGAGAATAAATTAATTAAG+TGG | - | chr7_4:44257399-44257418 | None:intergenic | 20.0% |
| !! | AATTAATTTATTCTCTGTGA+AGG | + | chr7_4:44257402-44257421 | Msa1156050:intron | 20.0% |
| !! | ATTAATTTATTCTCTGTGAA+GGG | + | chr7_4:44257403-44257422 | Msa1156050:intron | 20.0% |
| !!! | AAATCTGAAACTATAATCAT+TGG | - | chr7_4:44258365-44258384 | None:intergenic | 20.0% |
| !!! | ATGATTATAGTTTCAGATTT+TGG | + | chr7_4:44258365-44258384 | Msa1156050:intron | 20.0% |
| !!! | TTTCAGATTTTGGTAAAAAT+AGG | + | chr7_4:44258375-44258394 | Msa1156050:intron | 20.0% |
| !! | TCTTACAAATCATTTAATGT+AGG | + | chr7_4:44258534-44258553 | Msa1156050:intron | 20.0% |
| !!! | AAAAGTTGAAGATAATCTTT+TGG | + | chr7_4:44258975-44258994 | Msa1156050:CDS | 20.0% |
| !! | AAATAAAATAGAAGAACCAT+TGG | - | chr7_4:44259143-44259162 | None:intergenic | 20.0% |
| !!! | CTTCTATTTTATTTTGCTTT+TGG | + | chr7_4:44259149-44259168 | Msa1156050:intron | 20.0% |
| !! | TATGAATGATTTATTATTGC+AGG | + | chr7_4:44259201-44259220 | Msa1156050:intron | 20.0% |
| !!! | GAATTAAAACATTTGCTAAT+TGG | + | chr7_4:44259550-44259569 | Msa1156050:intron | 20.0% |
| !!! | GAGCAATATATTTTTTTGAA+CGG | + | chr7_4:44259625-44259644 | Msa1156050:intron | 20.0% |
| !! | TAATGAAAAGAAGATATTTG+AGG | + | chr7_4:44259949-44259968 | Msa1156050:CDS | 20.0% |
| !!! | TTATACATGATTATGCTTTT+AGG | + | chr7_4:44260453-44260472 | Msa1156050:intron | 20.0% |
| !!! | TATACATGATTATGCTTTTA+GGG | + | chr7_4:44260454-44260473 | Msa1156050:intron | 20.0% |
| ! | GGAAAAAGAAGAAAGAAAAA+AGG | - | chr7_4:44256616-44256635 | None:intergenic | 25.0% |
| ! | TGTTAGTGAAATAATTGAGT+TGG | - | chr7_4:44257368-44257387 | None:intergenic | 25.0% |
| ! | CTCAATTATTTCACTAACAT+AGG | + | chr7_4:44257369-44257388 | Msa1156050:intron | 25.0% |
| ! | CATCTACAATTTGCATAAAA+TGG | - | chr7_4:44257463-44257482 | None:intergenic | 25.0% |
| !! | TGTTCATATAATCTGTTTTG+AGG | + | chr7_4:44257605-44257624 | Msa1156050:intron | 25.0% |
| ! | ATACTACAACTATTGTAGTT+TGG | + | chr7_4:44258104-44258123 | Msa1156050:intron | 25.0% |
| !!! | TAATCATTGGTCTATTTTAC+AGG | - | chr7_4:44258352-44258371 | None:intergenic | 25.0% |
| ! | AATGGCGTAAGAAAATTAAA+TGG | - | chr7_4:44258413-44258432 | None:intergenic | 25.0% |
| !! | TAGATACTAAAGCATCAATT+AGG | + | chr7_4:44258436-44258455 | Msa1156050:intron | 25.0% |
| !! | ATGATTTGTAAGACAATTGT+AGG | - | chr7_4:44258527-44258546 | None:intergenic | 25.0% |
| !!! | TTAATGTAGGTTATTTTCAC+TGG | + | chr7_4:44258547-44258566 | Msa1156050:intron | 25.0% |
| !!! | TAATGTAGGTTATTTTCACT+GGG | + | chr7_4:44258548-44258567 | Msa1156050:intron | 25.0% |
| !! | ATTTATAACCGACTTCTTTA+AGG | + | chr7_4:44258900-44258919 | Msa1156050:CDS | 25.0% |
| !! | ATCTTATTGCAATTCTGAAA+CGG | + | chr7_4:44258950-44258969 | Msa1156050:CDS | 25.0% |
| ! | TCATTAAAATTAGGCTCAAA+AGG | - | chr7_4:44259236-44259255 | None:intergenic | 25.0% |
| !!! | AAATATTCTTTTAAAAGGGC+AGG | + | chr7_4:44259294-44259313 | Msa1156050:intron | 25.0% |
| ! | TCAAATCTAAATTAGTGTTC+TGG | + | chr7_4:44259320-44259339 | Msa1156050:intron | 25.0% |
| ! | CAAATCTAAATTAGTGTTCT+GGG | + | chr7_4:44259321-44259340 | Msa1156050:intron | 25.0% |
| ! | AAATCTAAATTAGTGTTCTG+GGG | + | chr7_4:44259322-44259341 | Msa1156050:intron | 25.0% |
| ! | ATAAAATGCATTAATGCTAG+TGG | + | chr7_4:44259459-44259478 | Msa1156050:intron | 25.0% |
| ! | TTCATATAATTCCAAACTGT+AGG | - | chr7_4:44259506-44259525 | None:intergenic | 25.0% |
| ! | AAGCAAATAATATGAAACAG+TGG | - | chr7_4:44259530-44259549 | None:intergenic | 25.0% |
| !! | TCTATCTGTTTGAAATATCT+TGG | + | chr7_4:44259603-44259622 | Msa1156050:intron | 25.0% |
| !! | TTCTATCTGTTTGAAATATC+TGG | + | chr7_4:44259602-44259621 | Msa1156050:intron | 25.0% |
| !! | TCTATCTGTTTGAAATATCT+GGG | + | chr7_4:44259603-44259622 | Msa1156050:intron | 25.0% |
| !! | TACTTTGTTATACTGTACAT+TGG | + | chr7_4:44260216-44260235 | Msa1156050:intron | 25.0% |
| ! | AAAGAGATCTAATAATCTCA+GGG | - | chr7_4:44260704-44260723 | None:intergenic | 25.0% |
| ! | TAAAGAGATCTAATAATCTC+AGG | - | chr7_4:44260705-44260724 | None:intergenic | 25.0% |
| ! | TATTAGATCTCTTTATGAAC+AGG | + | chr7_4:44260710-44260729 | Msa1156050:CDS | 25.0% |
| ! | TACAGTTGCTTATTTATAAC+TGG | + | chr7_4:44260897-44260916 | Msa1156050:intron | 25.0% |
| !! | AATCGTTTCTTCAATTTTGA+TGG | + | chr7_4:44261277-44261296 | Msa1156050:three_prime_UTR | 25.0% |
| !! | AAGGATTATAATGCATTTTG+TGG | + | chr7_4:44261323-44261342 | Msa1156050:three_prime_UTR | 25.0% |
| !!! | AACACATTTCACTGTTTTAA+TGG | - | chr7_4:44261390-44261409 | None:intergenic | 25.0% |
| !!! | TCATTAATTTGTCTTACGAT+CGG | + | chr7_4:44261460-44261479 | Msa1156050:three_prime_UTR | 25.0% |
| CTGAAAGATTTGCATAAACA+TGG | - | chr7_4:44256819-44256838 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCGCAAAATCGAAT+GGG | - | chr7_4:44256847-44256866 | None:intergenic | 30.0% |
| ATCTTAGATCTAGAGAGTTA+TGG | + | chr7_4:44256896-44256915 | Msa1156050:intron | 30.0% | |
| AGAAAACCTAATGAACGAAA+GGG | - | chr7_4:44256953-44256972 | None:intergenic | 30.0% | |
| AAGAAAACCTAATGAACGAA+AGG | - | chr7_4:44256954-44256973 | None:intergenic | 30.0% | |
| ATAAAAAGAACAGTCAATGG+AGG | - | chr7_4:44257250-44257269 | None:intergenic | 30.0% | |
| GACATAAAAAGAACAGTCAA+TGG | - | chr7_4:44257253-44257272 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTTAATCACCAG+TGG | + | chr7_4:44257638-44257657 | Msa1156050:intron | 30.0% |
| ATGTTTACACACAAAGATTC+AGG | - | chr7_4:44258160-44258179 | None:intergenic | 30.0% | |
| AGAATGGTATACAAAGAGTA+GGG | - | chr7_4:44258241-44258260 | None:intergenic | 30.0% | |
| ATGCTTTAGTATCTAGTCAA+TGG | - | chr7_4:44258431-44258450 | None:intergenic | 30.0% | |
| TTTGTAAGACAATTGTAGGT+TGG | - | chr7_4:44258523-44258542 | None:intergenic | 30.0% | |
| !! | AATGTAGGTTATTTTCACTG+GGG | + | chr7_4:44258549-44258568 | Msa1156050:intron | 30.0% |
| TCATACTCTATTATGGAGTA+AGG | - | chr7_4:44258622-44258641 | None:intergenic | 30.0% | |
| TTACTCCATAATAGAGTATG+AGG | + | chr7_4:44258621-44258640 | Msa1156050:CDS | 30.0% | |
| ! | ACAAGGTTATCTTTAAGAAG+TGG | - | chr7_4:44258859-44258878 | None:intergenic | 30.0% |
| ACTTCTTAAAGATAACCTTG+TGG | + | chr7_4:44258858-44258877 | Msa1156050:CDS | 30.0% | |
| CAAATACTCCTTAAAGAAGT+CGG | - | chr7_4:44258911-44258930 | None:intergenic | 30.0% | |
| GAATTGCAATAAGATCATCA+AGG | - | chr7_4:44258945-44258964 | None:intergenic | 30.0% | |
| !! | TCTTATTGCAATTCTGAAAC+GGG | + | chr7_4:44258951-44258970 | Msa1156050:CDS | 30.0% |
| !! | ATTTTATTTGTCTGAGCCAA+TGG | + | chr7_4:44259124-44259143 | Msa1156050:intron | 30.0% |
| TTCATAGAATGAGATCATCA+AGG | - | chr7_4:44259187-44259206 | None:intergenic | 30.0% | |
| ! | AAAATTTTGTGATGCAGTTC+AGG | - | chr7_4:44259437-44259456 | None:intergenic | 30.0% |
| ! | CTTTTCATTATACTCCACTA+AGG | - | chr7_4:44259939-44259958 | None:intergenic | 30.0% |
| TTTAACAACACAGATAACAG+AGG | + | chr7_4:44259997-44260016 | Msa1156050:CDS | 30.0% | |
| !! | GATCTTATGGGATGTTTTAA+TGG | + | chr7_4:44260099-44260118 | Msa1156050:CDS | 30.0% |
| !!! | GTAACTTTTAGAATCTTGCT+TGG | + | chr7_4:44260181-44260200 | Msa1156050:intron | 30.0% |
| !! | ACATTGGTTTCCTATTGAAT+AGG | + | chr7_4:44260232-44260251 | Msa1156050:intron | 30.0% |
| TACATCAGTTCCTATTCAAT+AGG | - | chr7_4:44260245-44260264 | None:intergenic | 30.0% | |
| CAATGAACATATTACAGTCA+AGG | - | chr7_4:44260323-44260342 | None:intergenic | 30.0% | |
| CTTGACTGTAATATGTTCAT+TGG | + | chr7_4:44260321-44260340 | Msa1156050:intron | 30.0% | |
| !! | ATGATTATGCTTTTAGGGAA+TGG | + | chr7_4:44260459-44260478 | Msa1156050:intron | 30.0% |
| TTTCTCAATAAGCAATCAGA+TGG | - | chr7_4:44260490-44260509 | None:intergenic | 30.0% | |
| TTACGATAAAGGTGAAAACA+TGG | + | chr7_4:44260574-44260593 | Msa1156050:intron | 30.0% | |
| TACGATAAAGGTGAAAACAT+GGG | + | chr7_4:44260575-44260594 | Msa1156050:intron | 30.0% | |
| TGCTTATTTATAACTGGTAC+AGG | + | chr7_4:44260903-44260922 | Msa1156050:intron | 30.0% | |
| AATATCAAAGAAAGAGAACC+GGG | - | chr7_4:44261054-44261073 | None:intergenic | 30.0% | |
| CAATATCAAAGAAAGAGAAC+CGG | - | chr7_4:44261055-44261074 | None:intergenic | 30.0% | |
| CGAAATAGATTATTAGTACC+AGG | - | chr7_4:44261104-44261123 | None:intergenic | 30.0% | |
| CATATAATCTCTCATGTGTA+TGG | - | chr7_4:44261187-44261206 | None:intergenic | 30.0% | |
| ATGAGAGATTATATGCTACA+TGG | + | chr7_4:44261192-44261211 | Msa1156050:three_prime_UTR | 30.0% | |
| ACAGTAAAGAGCCATTATAA+AGG | - | chr7_4:44261248-44261267 | None:intergenic | 30.0% | |
| TTATAATGGCTCTTTACTGT+TGG | + | chr7_4:44261248-44261267 | Msa1156050:three_prime_UTR | 30.0% | |
| ! | TCTAATTTTCAGACAACTCT+TGG | + | chr7_4:44261427-44261446 | Msa1156050:three_prime_UTR | 30.0% |
| AAAAAGGACAGAACTGAGTT+CGG | - | chr7_4:44256600-44256619 | None:intergenic | 35.0% | |
| CTCATAAACCAAGACGAATT+GGG | - | chr7_4:44256709-44256728 | None:intergenic | 35.0% | |
| !!! | CGTTTTTTCGCAAAATCGAA+TGG | - | chr7_4:44256848-44256867 | None:intergenic | 35.0% |
| CTAGAGAGTTATGGCTAATT+AGG | + | chr7_4:44256905-44256924 | Msa1156050:intron | 35.0% | |
| AAAACCTAATGAACGAAAGG+GGG | - | chr7_4:44256951-44256970 | None:intergenic | 35.0% | |
| GAAAACCTAATGAACGAAAG+GGG | - | chr7_4:44256952-44256971 | None:intergenic | 35.0% | |
| TAAAAATCTTACCCGAGAGT+GGG | - | chr7_4:44257218-44257237 | None:intergenic | 35.0% | |
| CAGCATTATCCAAGTAAATC+TGG | - | chr7_4:44257736-44257755 | None:intergenic | 35.0% | |
| CAGATTTACTTGGATAATGC+TGG | + | chr7_4:44257734-44257753 | Msa1156050:CDS | 35.0% | |
| TAGTAAGCTTGCCTCAAAAA+AGG | - | chr7_4:44257938-44257957 | None:intergenic | 35.0% | |
| ! | AGAGACAACAAATTTTCTGC+TGG | - | chr7_4:44257963-44257982 | None:intergenic | 35.0% |
| TCCTATTTCGATATGACTGT+AGG | + | chr7_4:44258014-44258033 | Msa1156050:intron | 35.0% | |
| TCCTACAGTCATATCGAAAT+AGG | - | chr7_4:44258018-44258037 | None:intergenic | 35.0% | |
| ! | GGGAGATACTATTCTTTTTC+AGG | - | chr7_4:44258221-44258240 | None:intergenic | 35.0% |
| GAGAATGGTATACAAAGAGT+AGG | - | chr7_4:44258242-44258261 | None:intergenic | 35.0% | |
| ATACTGAATAATGTGGAGAC+TGG | - | chr7_4:44258280-44258299 | None:intergenic | 35.0% | |
| GTCTACGATACTGAATAATG+TGG | - | chr7_4:44258287-44258306 | None:intergenic | 35.0% | |
| TCAATGTTCTCAATGCTTTG+TGG | + | chr7_4:44258472-44258491 | Msa1156050:intron | 35.0% | |
| !! | ATGTAGGTTATTTTCACTGG+GGG | + | chr7_4:44258550-44258569 | Msa1156050:intron | 35.0% |
| ACTCTATTATGGAGTAAGGA+TGG | - | chr7_4:44258618-44258637 | None:intergenic | 35.0% | |
| TGTTGCCTCATACTCTATTA+TGG | - | chr7_4:44258629-44258648 | None:intergenic | 35.0% | |
| TTCTGTATGTAGATCACAGA+TGG | - | chr7_4:44258667-44258686 | None:intergenic | 35.0% | |
| ATCTGTGATCTACATACAGA+AGG | + | chr7_4:44258666-44258685 | Msa1156050:CDS | 35.0% | |
| ! | TCTACATACAGAAGGTTTTG+CGG | + | chr7_4:44258674-44258693 | Msa1156050:CDS | 35.0% |
| TCAAGGTTCTTGATGAGAAA+CGG | - | chr7_4:44258706-44258725 | None:intergenic | 35.0% | |
| ! | ATTTTCCTCAAAAAGCTCCA+AGG | - | chr7_4:44258755-44258774 | None:intergenic | 35.0% |
| !! | AGCTTTTTGAGGAAAATGAG+AGG | + | chr7_4:44258758-44258777 | Msa1156050:CDS | 35.0% |
| ! | GGTTATCTTTAAGAAGTGGT+TGG | - | chr7_4:44258855-44258874 | None:intergenic | 35.0% |
| !! | CTTATTGCAATTCTGAAACG+GGG | + | chr7_4:44258952-44258971 | Msa1156050:CDS | 35.0% |
| ! | TAAAGATGCATCCTTTTCAC+TGG | - | chr7_4:44259067-44259086 | None:intergenic | 35.0% |
| TCCAAACTGTAGGTATCATA+CGG | - | chr7_4:44259496-44259515 | None:intergenic | 35.0% | |
| AACCATTGTGTCCAATTATC+TGG | + | chr7_4:44259663-44259682 | Msa1156050:intron | 35.0% | |
| ACCATTGTGTCCAATTATCT+GGG | + | chr7_4:44259664-44259683 | Msa1156050:intron | 35.0% | |
| ATCAATCACTCCCAGATAAT+TGG | - | chr7_4:44259677-44259696 | None:intergenic | 35.0% | |
| !! | TGTCAACTTTTTAGCAACGA+AGG | + | chr7_4:44259905-44259924 | Msa1156050:intron | 35.0% |
| TTCATTATACTCCACTAAGG+CGG | - | chr7_4:44259936-44259955 | None:intergenic | 35.0% | |
| TTATTGAGACTGTGAAGCTT+CGG | + | chr7_4:44260038-44260057 | Msa1156050:CDS | 35.0% | |
| !! | TTTTAATGGATGCTGTTCAG+TGG | + | chr7_4:44260113-44260132 | Msa1156050:CDS | 35.0% |
| CAGTCAAGGACATTGTATTA+CGG | - | chr7_4:44260309-44260328 | None:intergenic | 35.0% | |
| GATGCTGTTAATACACAGTT+TGG | + | chr7_4:44260429-44260448 | Msa1156050:intron | 35.0% | |
| ATATCAGCATGAATACTGAC+TGG | - | chr7_4:44260514-44260533 | None:intergenic | 35.0% | |
| CATCACTCTGTTTACGATAA+AGG | + | chr7_4:44260563-44260582 | Msa1156050:intron | 35.0% | |
| CTGAAGATACCATTCTTCAT+TGG | + | chr7_4:44260742-44260761 | Msa1156050:CDS | 35.0% | |
| TTTACGGAACCAATGAAGAA+TGG | - | chr7_4:44260754-44260773 | None:intergenic | 35.0% | |
| !! | ATTCTTCATTGGTTCCGTAA+AGG | + | chr7_4:44260753-44260772 | Msa1156050:CDS | 35.0% |
| AAAACTGCTTACCTTCCTTT+GGG | - | chr7_4:44260786-44260805 | None:intergenic | 35.0% | |
| AAAAACTGCTTACCTTCCTT+TGG | - | chr7_4:44260787-44260806 | None:intergenic | 35.0% | |
| CACTTGAACCCTTTGTTAAT+TGG | + | chr7_4:44260942-44260961 | Msa1156050:CDS | 35.0% | |
| ! | AGCTCTTTTGTATCATTACC+CGG | + | chr7_4:44261033-44261052 | Msa1156050:three_prime_UTR | 35.0% |
| TTTATTAGCTGTCTAACGCA+AGG | + | chr7_4:44261304-44261323 | Msa1156050:three_prime_UTR | 35.0% | |
| ! | TCTACTCGGTGATGATTGTT+GGG | - | chr7_4:44256667-44256686 | None:intergenic | 40.0% |
| ACGAATTGGGATCGAAAGAT+CGG | - | chr7_4:44256696-44256715 | None:intergenic | 40.0% | |
| CCTCATAAACCAAGACGAAT+TGG | - | chr7_4:44256710-44256729 | None:intergenic | 40.0% | |
| CCAATTCGTCTTGGTTTATG+AGG | + | chr7_4:44256707-44256726 | Msa1156050:exon | 40.0% | |
| GTAAAAATCTTACCCGAGAG+TGG | - | chr7_4:44257219-44257238 | None:intergenic | 40.0% | |
| CTTGGATAATGCTGGTGATT+TGG | + | chr7_4:44257742-44257761 | Msa1156050:CDS | 40.0% | |
| !! | CACACACTGTCATGTTTTGA+TGG | + | chr7_4:44257819-44257838 | Msa1156050:intron | 40.0% |
| GACCTCAACTTCTCAAGATA+CGG | + | chr7_4:44257907-44257926 | Msa1156050:CDS | 40.0% | |
| !!! | ATACGGTGACACCTTTTTTG+AGG | + | chr7_4:44257924-44257943 | Msa1156050:CDS | 40.0% |
| TCTTTGTATACCATTCTCCC+AGG | + | chr7_4:44258244-44258263 | Msa1156050:intron | 40.0% | |
| CTTTGTATACCATTCTCCCA+GGG | + | chr7_4:44258245-44258264 | Msa1156050:intron | 40.0% | |
| TTTGTATACCATTCTCCCAG+GGG | + | chr7_4:44258246-44258265 | Msa1156050:intron | 40.0% | |
| ! | ATCTTCGCGTGACATTTTCA+AGG | - | chr7_4:44258723-44258742 | None:intergenic | 40.0% |
| GGAAAATGAGAGGAAGAAGT+TGG | + | chr7_4:44258768-44258787 | Msa1156050:CDS | 40.0% | |
| AAAGATAACCTTGTGGCCAA+AGG | + | chr7_4:44258865-44258884 | Msa1156050:CDS | 40.0% | |
| AAGATAACCTTGTGGCCAAA+GGG | + | chr7_4:44258866-44258885 | Msa1156050:CDS | 40.0% | |
| AAATGTCAGAACTAGCCCTT+TGG | - | chr7_4:44258884-44258903 | None:intergenic | 40.0% | |
| !!! | ACTCGTTGGTTCTTTTTGCA+GGG | - | chr7_4:44259011-44259030 | None:intergenic | 40.0% |
| AGTCTTTCTCTGAGCATTTC+AGG | + | chr7_4:44259028-44259047 | Msa1156050:CDS | 40.0% | |
| !! | TTGAGCATTGGCAGAAAAGA+GGG | - | chr7_4:44259386-44259405 | None:intergenic | 40.0% |
| AACTGTAGGTATCATACGGT+TGG | - | chr7_4:44259492-44259511 | None:intergenic | 40.0% | |
| ACCGTATGATACCTACAGTT+TGG | + | chr7_4:44259492-44259511 | Msa1156050:intron | 40.0% | |
| TCCCAGATAATTGGACACAA+TGG | - | chr7_4:44259668-44259687 | None:intergenic | 40.0% | |
| ! | AAGCACTGTATCCAGTTATC+TGG | + | chr7_4:44259814-44259833 | Msa1156050:intron | 40.0% |
| AGCACTGTATCCAGTTATCT+GGG | + | chr7_4:44259815-44259834 | Msa1156050:intron | 40.0% | |
| ATCAATCACTCCCAGATAAC+TGG | - | chr7_4:44259828-44259847 | None:intergenic | 40.0% | |
| ! | GATATTTGAGGTGACACTCA+AGG | + | chr7_4:44259961-44259980 | Msa1156050:CDS | 40.0% |
| AACAACACAGATAACAGAGG+AGG | + | chr7_4:44260000-44260019 | Msa1156050:CDS | 40.0% | |
| TATTGAGACTGTGAAGCTTC+GGG | + | chr7_4:44260039-44260058 | Msa1156050:CDS | 40.0% | |
| TCTAAAAGTTACCTTGCGCA+GGG | - | chr7_4:44260173-44260192 | None:intergenic | 40.0% | |
| ! | TTCTAAAAGTTACCTTGCGC+AGG | - | chr7_4:44260174-44260193 | None:intergenic | 40.0% |
| AGGACATTGTATTACGGTCA+GGG | - | chr7_4:44260303-44260322 | None:intergenic | 40.0% | |
| AAGGACATTGTATTACGGTC+AGG | - | chr7_4:44260304-44260323 | None:intergenic | 40.0% | |
| TGTTCTGTGCGTTATTGTTG+AGG | + | chr7_4:44260365-44260384 | Msa1156050:intron | 40.0% | |
| GTTCTGTGCGTTATTGTTGA+GGG | + | chr7_4:44260366-44260385 | Msa1156050:intron | 40.0% | |
| TTCTGTGCGTTATTGTTGAG+GGG | + | chr7_4:44260367-44260386 | Msa1156050:intron | 40.0% | |
| TTGAATACTTTCTGCACCAG+TGG | + | chr7_4:44260606-44260625 | Msa1156050:CDS | 40.0% | |
| AGTACAGATGCAATGCTATG+AGG | + | chr7_4:44260656-44260675 | Msa1156050:CDS | 40.0% | |
| TCTTTATGAACAGGATGTGC+TGG | + | chr7_4:44260719-44260738 | Msa1156050:CDS | 40.0% | |
| !! | CTTTGGGGTTTGTTCCTTTA+CGG | - | chr7_4:44260770-44260789 | None:intergenic | 40.0% |
| AAACTGCTTACCTTCCTTTG+GGG | - | chr7_4:44260785-44260804 | None:intergenic | 40.0% | |
| TTATGACAGACTTCGTAAGG+AGG | - | chr7_4:44260850-44260869 | None:intergenic | 40.0% | |
| GTGTTATGACAGACTTCGTA+AGG | - | chr7_4:44260853-44260872 | None:intergenic | 40.0% | |
| GTAAGTAACAAGTGTGGTAG+TGG | - | chr7_4:44260880-44260899 | None:intergenic | 40.0% | |
| GCAACTGTAAGTAACAAGTG+TGG | - | chr7_4:44260886-44260905 | None:intergenic | 40.0% | |
| TGAACCCTTTGTTAATTGGC+TGG | + | chr7_4:44260946-44260965 | Msa1156050:CDS | 40.0% | |
| TCCTCCAGCCAATTAACAAA+GGG | - | chr7_4:44260953-44260972 | None:intergenic | 40.0% | |
| AAGAGGAGGAATGAATGTAG+CGG | + | chr7_4:44260978-44260997 | Msa1156050:exon | 40.0% | |
| TCTCATGAATTTGATGTGCC+TGG | + | chr7_4:44261083-44261102 | Msa1156050:three_prime_UTR | 40.0% | |
| ! | ATGCATTTTGTGGCTGTACA+AGG | + | chr7_4:44261333-44261352 | Msa1156050:three_prime_UTR | 40.0% |
| ! | TGCATTTTGTGGCTGTACAA+GGG | + | chr7_4:44261334-44261353 | Msa1156050:three_prime_UTR | 40.0% |
| AAGCAGTAGAGAGAGAGAGA+TGG | - | chr7_4:44256637-44256656 | None:intergenic | 45.0% | |
| ! | TACTCGGTGATGATTGTTGG+GGG | - | chr7_4:44256665-44256684 | None:intergenic | 45.0% |
| ! | CTACTCGGTGATGATTGTTG+GGG | - | chr7_4:44256666-44256685 | None:intergenic | 45.0% |
| ! | CTCTACTCGGTGATGATTGT+TGG | - | chr7_4:44256668-44256687 | None:intergenic | 45.0% |
| GAATTGGGATCGAAAGATCG+GGG | - | chr7_4:44256694-44256713 | None:intergenic | 45.0% | |
| CGAATTGGGATCGAAAGATC+GGG | - | chr7_4:44256695-44256714 | None:intergenic | 45.0% | |
| CTTTCGATCCCAATTCGTCT+TGG | + | chr7_4:44256698-44256717 | Msa1156050:five_prime_UTR | 45.0% | |
| ! | TGAACGAAAGGGGGCAATTT+TGG | - | chr7_4:44256942-44256961 | None:intergenic | 45.0% |
| ATTGCCCCCTTTCGTTCATT+AGG | + | chr7_4:44256944-44256963 | Msa1156050:intron | 45.0% | |
| TTGTGTTTCTTGCAGCTCCA+AGG | + | chr7_4:44257187-44257206 | Msa1156050:intron | 45.0% | |
| GAACAGTCAATGGAGGACAA+TGG | - | chr7_4:44257243-44257262 | None:intergenic | 45.0% | |
| TGCAGTGGTCCAGATTTACT+TGG | + | chr7_4:44257724-44257743 | Msa1156050:CDS | 45.0% | |
| CACCGTATCTTGAGAAGTTG+AGG | - | chr7_4:44257912-44257931 | None:intergenic | 45.0% | |
| !! | AGGTTATAGAAGTGCCTAGC+AGG | - | chr7_4:44258201-44258220 | None:intergenic | 45.0% |
| ! | TACAGAAGGTTTTGCGGAGA+AGG | + | chr7_4:44258680-44258699 | Msa1156050:CDS | 45.0% |
| GCTTTCTCTCAGAAGCTATC+TGG | + | chr7_4:44258808-44258827 | Msa1156050:CDS | 45.0% | |
| !!! | TCGTTGGTTCTTTTTGCAGG+GGG | - | chr7_4:44259009-44259028 | None:intergenic | 45.0% |
| !!! | CTCGTTGGTTCTTTTTGCAG+GGG | - | chr7_4:44259010-44259029 | None:intergenic | 45.0% |
| !!! | GACTCGTTGGTTCTTTTTGC+AGG | - | chr7_4:44259012-44259031 | None:intergenic | 45.0% |
| ATGCTCAGAGAAAGACTCGT+TGG | - | chr7_4:44259025-44259044 | None:intergenic | 45.0% | |
| ATTCTCACCTGCCAGTGAAA+AGG | + | chr7_4:44259053-44259072 | Msa1156050:intron | 45.0% | |
| ! | GGGGGAAATGGTTCTATTCA+AGG | - | chr7_4:44259365-44259384 | None:intergenic | 45.0% |
| !! | TGAGCATTGGCAGAAAAGAG+GGG | - | chr7_4:44259385-44259404 | None:intergenic | 45.0% |
| !! | CTTGAGCATTGGCAGAAAAG+AGG | - | chr7_4:44259387-44259406 | None:intergenic | 45.0% |
| TTCTGCCAATGCTCAAGAAG+CGG | + | chr7_4:44259390-44259409 | Msa1156050:intron | 45.0% | |
| CCATAAGATCCGCACAATCT+CGG | - | chr7_4:44260089-44260108 | None:intergenic | 45.0% | |
| CGAGATTGTGCGGATCTTAT+GGG | + | chr7_4:44260087-44260106 | Msa1156050:CDS | 45.0% | |
| GGGCTTAGCTTAGCATGTTA+TGG | + | chr7_4:44260387-44260406 | Msa1156050:intron | 45.0% | |
| GCTTAGCATGTTATGGTGTG+TGG | + | chr7_4:44260394-44260413 | Msa1156050:intron | 45.0% | |
| CGTAAAGGAACAAACCCCAA+AGG | + | chr7_4:44260768-44260787 | Msa1156050:CDS | 45.0% | |
| AAGGAACAAACCCCAAAGGA+AGG | + | chr7_4:44260772-44260791 | Msa1156050:CDS | 45.0% | |
| !! | TAACAAGTGTGGTAGTGGCA+AGG | - | chr7_4:44260875-44260894 | None:intergenic | 45.0% |
| GTACAGGCAAACCTTTGTGA+AGG | + | chr7_4:44260919-44260938 | Msa1156050:intron | 45.0% | |
| ACCCTTTGTTAATTGGCTGG+AGG | + | chr7_4:44260949-44260968 | Msa1156050:CDS | 45.0% | |
| CTCCTCCAGCCAATTAACAA+AGG | - | chr7_4:44260954-44260973 | None:intergenic | 45.0% | |
| CTTTGTTAATTGGCTGGAGG+AGG | + | chr7_4:44260952-44260971 | Msa1156050:CDS | 45.0% | |
| TGGAAAACATGCAAGCACCA+CGG | - | chr7_4:44261167-44261186 | None:intergenic | 45.0% | |
| !! | AAATATATTTCATTAAAATT+AGG | - | chr7_4:44259245-44259264 | None:intergenic | 5.0% |
| !!! | TAATTTTAATGAAATATATT+TGG | + | chr7_4:44259244-44259263 | Msa1156050:intron | 5.0% |
| !!! | AATTTTAATGAAATATATTT+GGG | + | chr7_4:44259245-44259264 | Msa1156050:intron | 5.0% |
| AAGATCGGGGAGTCTCTACT+CGG | - | chr7_4:44256681-44256700 | None:intergenic | 50.0% | |
| TCCAAGGAGAAACCCACTCT+CGG | + | chr7_4:44257203-44257222 | Msa1156050:CDS | 50.0% | |
| TCTTAATCACCAGTGGCACG+CGG | + | chr7_4:44257645-44257664 | Msa1156050:intron | 50.0% | |
| CTGCATCAGCAAATGCTGCA+GGG | - | chr7_4:44257709-44257728 | None:intergenic | 50.0% | |
| ACTGCATCAGCAAATGCTGC+AGG | - | chr7_4:44257710-44257729 | None:intergenic | 50.0% | |
| ! | TGCAGCATTTGCTGATGCAG+TGG | + | chr7_4:44257709-44257728 | Msa1156050:CDS | 50.0% |
| CACCTGTTATAGCACCTGCT+AGG | + | chr7_4:44258184-44258203 | Msa1156050:intron | 50.0% | |
| ! | TGCCTAGCAGGTGCTATAAC+AGG | - | chr7_4:44258189-44258208 | None:intergenic | 50.0% |
| TGGTAGTTCCAGGTTGTGTG+CGG | - | chr7_4:44258576-44258595 | None:intergenic | 50.0% | |
| CAAAAAGCTCCAAGGACTGG+AGG | - | chr7_4:44258747-44258766 | None:intergenic | 50.0% | |
| CCTCAAAAAGCTCCAAGGAC+TGG | - | chr7_4:44258750-44258769 | None:intergenic | 50.0% | |
| ! | CCAGTCCTTGGAGCTTTTTG+AGG | + | chr7_4:44258747-44258766 | Msa1156050:CDS | 50.0% |
| AGTGGTTGGAACACAGTCTC+CGG | - | chr7_4:44258841-44258860 | None:intergenic | 50.0% | |
| !!! | CGTTGGTTCTTTTTGCAGGG+GGG | - | chr7_4:44259008-44259027 | None:intergenic | 50.0% |
| ! | GATGCATCCTTTTCACTGGC+AGG | - | chr7_4:44259063-44259082 | None:intergenic | 50.0% |
| !! | AGCATTGGCAGAAAAGAGGG+GGG | - | chr7_4:44259383-44259402 | None:intergenic | 50.0% |
| !! | GAGCATTGGCAGAAAAGAGG+GGG | - | chr7_4:44259384-44259403 | None:intergenic | 50.0% |
| CAGTTCCGCTTCTTGAGCAT+TGG | - | chr7_4:44259398-44259417 | None:intergenic | 50.0% | |
| GGACACAATGGTTAGCGTGA+TGG | - | chr7_4:44259656-44259675 | None:intergenic | 50.0% | |
| GGATACAGTGCTTAGCGTGA+TGG | - | chr7_4:44259807-44259826 | None:intergenic | 50.0% | |
| TGCCTGAAACCGAGATTGTG+CGG | + | chr7_4:44260077-44260096 | Msa1156050:CDS | 50.0% | |
| ATCCGCACAATCTCGGTTTC+AGG | - | chr7_4:44260082-44260101 | None:intergenic | 50.0% | |
| CCGAGATTGTGCGGATCTTA+TGG | + | chr7_4:44260086-44260105 | Msa1156050:CDS | 50.0% | |
| ATGGATGCTGTTCAGTGGTC+AGG | + | chr7_4:44260118-44260137 | Msa1156050:CDS | 50.0% | |
| TGGATGCTGTTCAGTGGTCA+GGG | + | chr7_4:44260119-44260138 | Msa1156050:CDS | 50.0% | |
| CACCAGTGGAAAACTTGAGC+TGG | + | chr7_4:44260620-44260639 | Msa1156050:CDS | 50.0% | |
| ! | CTCCAGCTCAAGTTTTCCAC+TGG | - | chr7_4:44260625-44260644 | None:intergenic | 50.0% |
| GGGTTCAAGTGCCTTCACAA+AGG | - | chr7_4:44260933-44260952 | None:intergenic | 50.0% | |
| AGGAGGAATGAATGTAGCGG+AGG | + | chr7_4:44260981-44261000 | Msa1156050:exon | 50.0% | |
| CCAAGGAGAAACCCACTCTC+GGG | + | chr7_4:44257204-44257223 | Msa1156050:CDS | 55.0% | |
| ! | CGCGGATTAAGACCCGCAAA+CGG | + | chr7_4:44257663-44257682 | Msa1156050:CDS | 55.0% |
| CTTCAGATCCCCTGGGAGAA+TGG | - | chr7_4:44258257-44258276 | None:intergenic | 55.0% | |
| !! | AGACTGGCTTCAGATCCCCT+GGG | - | chr7_4:44258264-44258283 | None:intergenic | 55.0% |
| ! | TCATCGGGCTTGGTAGTTCC+AGG | - | chr7_4:44258586-44258605 | None:intergenic | 55.0% |
| TGGAACTACCAAGCCCGATG+AGG | + | chr7_4:44258585-44258604 | Msa1156050:CDS | 55.0% | |
| GGAACTACCAAGCCCGATGA+GGG | + | chr7_4:44258586-44258605 | Msa1156050:CDS | 55.0% | |
| GAACTACCAAGCCCGATGAG+GGG | + | chr7_4:44258587-44258606 | Msa1156050:CDS | 55.0% | |
| AACTACCAAGCCCGATGAGG+GGG | + | chr7_4:44258588-44258607 | Msa1156050:CDS | 55.0% | |
| GCGAAGATTCCTCCAGTCCT+TGG | + | chr7_4:44258735-44258754 | Msa1156050:CDS | 55.0% | |
| GAAGCTATCTGGTCTCCCAC+CGG | + | chr7_4:44258819-44258838 | Msa1156050:CDS | 55.0% | |
| GTTGGAACACAGTCTCCGGT+GGG | - | chr7_4:44258837-44258856 | None:intergenic | 55.0% | |
| GAACTAGCCCTTTGGCCACA+AGG | - | chr7_4:44258876-44258895 | None:intergenic | 55.0% | |
| GGCAGAAAAGAGGGGGGAAA+TGG | - | chr7_4:44259377-44259396 | None:intergenic | 55.0% | |
| GCAAGCACCACGGTACATGA+GGG | - | chr7_4:44261157-44261176 | None:intergenic | 55.0% | |
| TGCAAGCACCACGGTACATG+AGG | - | chr7_4:44261158-44261177 | None:intergenic | 55.0% | |
| ! | CCCGAGAGTGGGTTTCTCCT+TGG | - | chr7_4:44257207-44257226 | None:intergenic | 60.0% |
| GGTCTTAATCCGCGTGCCAC+TGG | - | chr7_4:44257657-44257676 | None:intergenic | 60.0% | |
| GACCCGCAAACGGAACATCG+CGG | + | chr7_4:44257673-44257692 | Msa1156050:CDS | 60.0% | |
| GCAAATGCTGCAGGGTCCAG+AGG | - | chr7_4:44257701-44257720 | None:intergenic | 60.0% | |
| !! | GAGACTGGCTTCAGATCCCC+TGG | - | chr7_4:44258265-44258284 | None:intergenic | 60.0% |
| AGGATGGCGTTCCCCCTCAT+CGG | - | chr7_4:44258602-44258621 | None:intergenic | 60.0% | |
| GGTTGGAACACAGTCTCCGG+TGG | - | chr7_4:44258838-44258857 | None:intergenic | 60.0% | |
| CGAAGGACTGACCGCCTTAG+TGG | + | chr7_4:44259922-44259941 | Msa1156050:CDS | 60.0% | |
| TGCAAATGCAGCCCTGCGCA+AGG | + | chr7_4:44260159-44260178 | Msa1156050:CDS | 60.0% | |
| TTGGCTGGAGGAGGCTGAAG+AGG | + | chr7_4:44260961-44260980 | Msa1156050:CDS | 60.0% | |
| CACCACGGTACATGAGGGCA+CGG | - | chr7_4:44261152-44261171 | None:intergenic | 60.0% | |
| CGCCGCGATGTTCCGTTTGC+GGG | - | chr7_4:44257678-44257697 | None:intergenic | 65.0% | |
| GCGCCGCGATGTTCCGTTTG+CGG | - | chr7_4:44257679-44257698 | None:intergenic | 65.0% | |
| GGATGGCGTTCCCCCTCATC+GGG | - | chr7_4:44258601-44258620 | None:intergenic | 65.0% | |
| GCTGGAGGAGGCTGAAGAGG+AGG | + | chr7_4:44260964-44260983 | Msa1156050:CDS | 65.0% | |
| ! | CACGGTACATGAGGGCACGG+CGG | - | chr7_4:44261149-44261168 | None:intergenic | 65.0% |
| ACGGAACATCGCGGCGCCTC+TGG | + | chr7_4:44257682-44257701 | Msa1156050:CDS | 70.0% | |
| ACTGGGGGCCGCACACAACC+TGG | + | chr7_4:44258565-44258584 | Msa1156050:CDS | 70.0% | |
| GCGTTCCCCCTCATCGGGCT+TGG | - | chr7_4:44258596-44258615 | None:intergenic | 70.0% | |
| CGCCGTGCCCTCATGTACCG+TGG | + | chr7_4:44261147-44261166 | Msa1156050:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 44256585 | 44261495 | 44256585 | ID=Msa1156050;Name=Msa1156050 |
| chr7_4 | mRNA | 44256585 | 44261495 | 44256585 | ID=Msa1156050-mRNA-1;Parent=Msa1156050;Name=Msa1156050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|0.85|1|8|504|411 |
| chr7_4 | exon | 44256585 | 44256728 | 44256585 | ID=Msa1156050-mRNA-1:exon:11222;Parent=Msa1156050-mRNA-1 |
| chr7_4 | exon | 44257202 | 44257225 | 44257202 | ID=Msa1156050-mRNA-1:exon:11223;Parent=Msa1156050-mRNA-1 |
| chr7_4 | exon | 44257658 | 44257763 | 44257658 | ID=Msa1156050-mRNA-1:exon:11224;Parent=Msa1156050-mRNA-1 |
| chr7_4 | exon | 44257877 | 44257945 | 44257877 | ID=Msa1156050-mRNA-1:exon:11225;Parent=Msa1156050-mRNA-1 |
| chr7_4 | exon | 44258556 | 44259049 | 44258556 | ID=Msa1156050-mRNA-1:exon:11226;Parent=Msa1156050-mRNA-1 |
| chr7_4 | exon | 44259919 | 44260180 | 44259919 | ID=Msa1156050-mRNA-1:exon:11227;Parent=Msa1156050-mRNA-1 |
| chr7_4 | exon | 44260585 | 44260793 | 44260585 | ID=Msa1156050-mRNA-1:exon:11228;Parent=Msa1156050-mRNA-1 |
| chr7_4 | exon | 44260925 | 44261495 | 44260925 | ID=Msa1156050-mRNA-1:exon:11229;Parent=Msa1156050-mRNA-1 |
| chr7_4 | five_prime_UTR | 44256585 | 44256723 | 44256585 | ID=Msa1156050-mRNA-1:five_prime_utr;Parent=Msa1156050-mRNA-1 |
| chr7_4 | CDS | 44256724 | 44256728 | 44256724 | ID=Msa1156050-mRNA-1:cds;Parent=Msa1156050-mRNA-1 |
| chr7_4 | CDS | 44257202 | 44257225 | 44257202 | ID=Msa1156050-mRNA-1:cds;Parent=Msa1156050-mRNA-1 |
| chr7_4 | CDS | 44257658 | 44257763 | 44257658 | ID=Msa1156050-mRNA-1:cds;Parent=Msa1156050-mRNA-1 |
| chr7_4 | CDS | 44257877 | 44257945 | 44257877 | ID=Msa1156050-mRNA-1:cds;Parent=Msa1156050-mRNA-1 |
| chr7_4 | CDS | 44258556 | 44259049 | 44258556 | ID=Msa1156050-mRNA-1:cds;Parent=Msa1156050-mRNA-1 |
| chr7_4 | CDS | 44259919 | 44260180 | 44259919 | ID=Msa1156050-mRNA-1:cds;Parent=Msa1156050-mRNA-1 |
| chr7_4 | CDS | 44260585 | 44260793 | 44260585 | ID=Msa1156050-mRNA-1:cds;Parent=Msa1156050-mRNA-1 |
| chr7_4 | CDS | 44260925 | 44260991 | 44260925 | ID=Msa1156050-mRNA-1:cds;Parent=Msa1156050-mRNA-1 |
| chr7_4 | three_prime_UTR | 44260992 | 44261495 | 44260992 | ID=Msa1156050-mRNA-1:three_prime_utr;Parent=Msa1156050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
