AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157410 MtrunA17_Chr7g0251591 98.131 535 10 0 1 535 1 535 0.0 1063
Msa1157410 MtrunA17_Chr3g0131841 30.841 535 256 19 1 509 1 447 3.48e-45 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157410 AT3G26890.5 41.712 549 251 18 1 535 1 494 5.90e-99 313
Msa1157410 AT3G26890.1 41.712 549 251 18 1 535 1 494 5.90e-99 313
Msa1157410 AT3G26890.4 41.712 549 251 18 1 535 1 494 5.90e-99 313
Msa1157410 AT3G26890.3 41.712 549 251 18 1 535 1 494 5.90e-99 313
Msa1157410 AT3G26890.7 41.712 549 251 18 1 535 1 494 5.90e-99 313
Msa1157410 AT3G26890.8 41.712 549 251 18 1 535 1 494 5.90e-99 313
Msa1157410 AT3G26890.2 41.712 549 251 18 1 535 1 494 5.90e-99 313
Msa1157410 AT3G26890.6 41.712 549 250 19 1 535 1 493 1.85e-97 310
Msa1157410 AT5G41110.1 44.685 461 176 16 93 535 89 488 5.71e-91 292
Msa1157410 AT5G41110.2 44.685 461 176 16 93 535 89 488 5.71e-91 292
Msa1157410 AT5G41110.3 42.069 435 173 16 93 509 89 462 1.15e-72 239

Find 163 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCTGGCCGGTTTGTTTC+TGG 0.108815 7_4:-46399557 Msa1157410:CDS
CTTGCCGTGTTAAGTATTTC+TGG 0.145625 7_4:-46399375 Msa1157410:CDS
AATGGAAGCTTCTGTGATTT+AGG 0.225625 7_4:+46399339 None:intergenic
GGGTTCTTACTCCTGCTTCC+AGG 0.259187 7_4:-46400471 Msa1157410:CDS
TTTGTTCCAGTTGCAGTTCT+TGG 0.264094 7_4:-46401197 Msa1157410:five_prime_UTR
GCAGTTATACAATGCCTTCT+TGG 0.268730 7_4:-46400150 Msa1157410:CDS
TTCTTCCTTTCATTGGTATA+CGG 0.280459 7_4:+46399169 None:intergenic
CATTTCTAATGAGGCATTCT+TGG 0.283943 7_4:+46400612 None:intergenic
TGATGAAAATGTCGAACTTT+TGG 0.288161 7_4:-46400758 Msa1157410:CDS
GCAAATCTCCATTCTTCTTT+TGG 0.289993 7_4:-46400385 Msa1157410:CDS
ATCATCCACTATGGATTGTT+TGG 0.290000 7_4:-46401253 Msa1157410:five_prime_UTR
TCGACACTAGTAACAGAAAA+TGG 0.292636 7_4:+46399321 None:intergenic
GATAATAAGAAGGCAAATAT+TGG 0.299727 7_4:-46400181 Msa1157410:CDS
CTATTAAAATTGAACACTTA+AGG 0.322313 7_4:-46400012 Msa1157410:CDS
AAGAACCCTCCGTTCAGTTT+TGG 0.325248 7_4:+46400486 None:intergenic
AGAATTTCCCGCAAGATCTA+TGG 0.325534 7_4:+46399269 None:intergenic
TTCCAATTGTAGTTGTTAAT+AGG 0.329949 7_4:-46401047 Msa1157410:five_prime_UTR
AGCTGAATTCTTCCTTTCAT+TGG 0.332758 7_4:+46399162 None:intergenic
CGGGAAATTCTTTATCAAAC+AGG 0.333370 7_4:-46399257 Msa1157410:CDS
ATTTCCTGAAAGAATGAAAA+TGG 0.335182 7_4:-46399900 Msa1157410:CDS
GGCTTCATCTGCTGCGAGTA+TGG 0.338263 7_4:-46401231 Msa1157410:five_prime_UTR
AATCTCTGACTAAATTGATA+TGG 0.338509 7_4:-46398511 Msa1157410:CDS
ACTTTCAGTCAGAAGGTCTT+TGG 0.340125 7_4:-46399603 Msa1157410:CDS
CATAGATACAAACCTTAGTA+TGG 0.350741 7_4:+46399531 None:intergenic
ACATAGTATGAAGTTCTTGT+AGG 0.352298 7_4:-46401099 Msa1157410:five_prime_UTR
CAAAGTAAGATTTGGCAATA+TGG 0.353053 7_4:-46398537 Msa1157410:CDS
AGAAGATGAGATAAGGGTTA+AGG 0.354226 7_4:+46402163 None:intergenic
CCCTTCTGCAATTCAACCTT+GGG 0.355021 7_4:+46402026 None:intergenic
TATTAAAATTGAACACTTAA+GGG 0.358392 7_4:-46400011 Msa1157410:CDS
ATTGGTACCAAAGTAAGATT+TGG 0.362126 7_4:-46398545 Msa1157410:CDS
TCATCCACTATGGATTGTTT+GGG 0.364717 7_4:-46401252 Msa1157410:five_prime_UTR
ATTTCTAATGAGGCATTCTT+GGG 0.368123 7_4:+46400613 None:intergenic
TTGCCGTGTTAAGTATTTCT+GGG 0.370614 7_4:-46399374 Msa1157410:CDS
TTCATTCTTTCAGGAAATCT+AGG 0.372002 7_4:+46399905 None:intergenic
GTCTTTGGTTGGTTCATTTG+AGG 0.384587 7_4:-46399588 Msa1157410:CDS
GTATGAAGTTCTTGTAGGTT+TGG 0.385354 7_4:-46401094 Msa1157410:five_prime_UTR
CTGCTCAAAGCAATTTGATA+AGG 0.387117 7_4:+46400126 None:intergenic
AGATTTCTGTCCATCTTCTC+TGG 0.387579 7_4:-46399711 Msa1157410:CDS
ATTGCAATTCTTTATCTCTT+CGG 0.393497 7_4:+46399856 None:intergenic
AATTCTTTATCAAACAGGTT+TGG 0.400272 7_4:-46399252 Msa1157410:CDS
CATATTGCCAAATCTTACTT+TGG 0.400461 7_4:+46398538 None:intergenic
AAAAGATCAAATTAAACAAA+AGG 0.402774 7_4:+46402075 None:intergenic
GAACCTTGCAGAATTAGAAA+TGG 0.404122 7_4:+46399643 None:intergenic
AATCTTACTTTGGTACCAAT+TGG 0.407975 7_4:+46398548 None:intergenic
GAAGATGAGATAAGGGTTAA+GGG 0.410652 7_4:+46402164 None:intergenic
TAGTTGTTAGCTGATGTTGT+AGG 0.410682 7_4:-46400976 Msa1157410:five_prime_UTR
ACTGACACGCTTACTAGTTT+CGG 0.413584 7_4:+46401005 None:intergenic
AATGTCTTATCAGAAACATT+TGG 0.418483 7_4:+46400589 None:intergenic
TACCTATTAACAACTACAAT+TGG 0.423061 7_4:+46401045 None:intergenic
GCTTCACTTGATGGTATTTG+TGG 0.424333 7_4:+46400781 None:intergenic
ACTCCTGCTTCCAGGGTTGT+CGG 0.426874 7_4:-46400463 Msa1157410:CDS
ACAGATATTACGCCACTTTG+AGG 0.431291 7_4:+46399968 None:intergenic
ATATATCCAAGAACTGCAAC+TGG 0.431562 7_4:+46401191 None:intergenic
GACCAATGAAGTGGCAGATT+CGG 0.433702 7_4:+46400342 None:intergenic
TAGGTTTGGAATCATTTGAT+TGG 0.438295 7_4:-46401080 Msa1157410:five_prime_UTR
AACATTTGGCATTTCTAATG+AGG 0.440023 7_4:+46400603 None:intergenic
CCTCTTTCGTTGTCACCCCT+CGG 0.447832 7_4:-46399929 Msa1157410:CDS
CTTCTGTTTCCACCTTTCAT+CGG 0.452187 7_4:-46401976 Msa1157410:intron
CACCGAATCTGCCACTTCAT+TGG 0.454316 7_4:-46400344 Msa1157410:CDS
TAAGCCCTCGTTTCAGAAGT+TGG 0.456282 7_4:+46399226 None:intergenic
TAGGTCTTACCGTGATCATC+TGG 0.457601 7_4:-46400957 Msa1157410:five_prime_UTR
GGTTCTTACTCCTGCTTCCA+GGG 0.461629 7_4:-46400470 Msa1157410:CDS
CATAGTGGATGATCAGTTCA+TGG 0.463238 7_4:+46401263 None:intergenic
CTTTCATTGGTATACGGAAA+CGG 0.463415 7_4:+46399175 None:intergenic
GGTCCTTTGCTTGAAAATAG+AGG 0.463606 7_4:-46400061 Msa1157410:CDS
AAAATGAAGAAGATGAGATA+AGG 0.466322 7_4:+46402156 None:intergenic
GTGACTTAAGTATTAGAGAT+GGG 0.470105 7_4:-46400808 Msa1157410:exon
ACCCTTCTGCAATTCAACCT+TGG 0.471155 7_4:+46402025 None:intergenic
TAATAGTTGGTGAACTACCC+TGG 0.473332 7_4:+46400029 None:intergenic
AAATGAAGAAGATGAGATAA+GGG 0.478642 7_4:+46402157 None:intergenic
CATGAACTGATCATCCACTA+TGG 0.479524 7_4:-46401262 Msa1157410:five_prime_UTR
AAGGTGGAAACAGAAGAATC+AGG 0.480188 7_4:+46401983 None:intergenic
TATGCATCCATAGATCTTGC+GGG 0.489705 7_4:-46399276 Msa1157410:CDS
TGAAAATGGCCACAGGATGC+AGG 0.490719 7_4:-46399886 Msa1157410:CDS
GAAATGTCGTCCAGAGAAGA+TGG 0.495083 7_4:+46399701 None:intergenic
CAAATTAAACAAAAGGGTGT+TGG 0.501179 7_4:+46402082 None:intergenic
TCTTTATCAAACAGGTTTGG+AGG 0.501364 7_4:-46399249 Msa1157410:CDS
TCGTTAATTATTTGATCCCA+AGG 0.502467 7_4:-46402042 Msa1157410:five_prime_UTR
AAAGGCGATTCTCTTGACAT+AGG 0.502608 7_4:-46400268 Msa1157410:CDS
TTCATGCTGCTTATAGAAGA+GGG 0.503762 7_4:+46400694 None:intergenic
TAGAAAAGATGATTCACAAA+TGG 0.504941 7_4:-46399205 Msa1157410:CDS
TGTTTCTGGAAACCATACTA+AGG 0.505232 7_4:-46399543 Msa1157410:intron
GAAGAATGGAGATTTGCTAC+TGG 0.505944 7_4:+46400391 None:intergenic
AATAGTTGGTGAACTACCCT+GGG 0.507763 7_4:+46400030 None:intergenic
ACAGATGTTAATGTTGTTGT+GGG 0.508480 7_4:-46402232 Msa1157410:five_prime_UTR
TATGGTTTCCAGAAACAAAC+CGG 0.508917 7_4:+46399549 None:intergenic
AGATACTACCAAAAGAAGAA+TGG 0.509004 7_4:+46400377 None:intergenic
ATGAATAGTGTAAACACTCA+TGG 0.509594 7_4:-46400676 Msa1157410:CDS
AAAGATCAAATTAAACAAAA+GGG 0.510854 7_4:+46402076 None:intergenic
AATCTGCCACTTCATTGGTC+AGG 0.513369 7_4:-46400339 Msa1157410:CDS
AGTGACTTAAGTATTAGAGA+TGG 0.518035 7_4:-46400809 Msa1157410:exon
AACCTTGCAGAATTAGAAAT+GGG 0.518979 7_4:+46399644 None:intergenic
GGGTGTGCTGCATGTACCCT+TGG 0.519395 7_4:-46400655 Msa1157410:CDS
TCAGTCAGAAGGTCTTTGGT+TGG 0.520387 7_4:-46399599 Msa1157410:CDS
AGATGGACAGAAATCTTTGA+AGG 0.523799 7_4:+46399718 None:intergenic
TTTCAGGAAATCTAGGACCG+AGG 0.525504 7_4:+46399912 None:intergenic
TGCCGTGTTAAGTATTTCTG+GGG 0.526820 7_4:-46399373 Msa1157410:CDS
GACAGATGTTAATGTTGTTG+TGG 0.529667 7_4:-46402233 Msa1157410:five_prime_UTR
AGAACAAGTTCTTTAACTGA+TGG 0.530111 7_4:-46400427 Msa1157410:CDS
AGTGGCAGATTCGGTGTCAT+TGG 0.531398 7_4:+46400351 None:intergenic
CCGAGGGGTGACAACGAAAG+AGG 0.532056 7_4:+46399929 None:intergenic
TGAGTGGACTTTCAGTCAGA+AGG 0.536067 7_4:-46399610 Msa1157410:CDS
GATCTTCAAACTGTGGACAT+TGG 0.537193 7_4:+46400540 None:intergenic
TTCAGGAAATCTAGGACCGA+GGG 0.537725 7_4:+46399913 None:intergenic
TGCTTCCAAAACTGAACGGA+GGG 0.546214 7_4:-46400491 Msa1157410:CDS
AAATAGAGGCTTCATATCCC+AGG 0.546921 7_4:-46400047 Msa1157410:CDS
CTTCTTATTATCTTGTGCAG+TGG 0.547056 7_4:+46400192 None:intergenic
AACATTATCATTCTTAACAA+GGG 0.548514 7_4:+46400222 None:intergenic
AAACCGACAACCCTGGAAGC+AGG 0.550114 7_4:+46400460 None:intergenic
CTATGTTATGTTTATATCAG+AGG 0.550580 7_4:+46401116 None:intergenic
GATTTGAGTGACATGCCAAT+TGG 0.552113 7_4:-46398563 Msa1157410:CDS
TTGCAAAAGAATGTGTGAAG+AGG 0.553725 7_4:+46398590 None:intergenic
CACCCATTTCTAATTCTGCA+AGG 0.554901 7_4:-46399646 Msa1157410:CDS
TTATGCATCCATAGATCTTG+CGG 0.558647 7_4:-46399277 Msa1157410:CDS
GAATCGCCTTTGAAATGACT+CGG 0.559073 7_4:+46400280 None:intergenic
GAGGCCAACTTCTGAAACGA+GGG 0.559815 7_4:-46399230 Msa1157410:CDS
AATCGCCTTTGAAATGACTC+GGG 0.559889 7_4:+46400281 None:intergenic
TCCCAAGGTTGAATTGCAGA+AGG 0.561224 7_4:-46402027 Msa1157410:five_prime_UTR
AATGAAAGGAAGAATTCAGC+TGG 0.561386 7_4:-46399160 Msa1157410:intron
CATAGGATGCAGAAATAATG+AGG 0.570164 7_4:-46400251 Msa1157410:CDS
TACCGTGATCATCTGGTGAA+AGG 0.570721 7_4:-46400950 Msa1157410:five_prime_UTR
TGAATAGTGTAAACACTCAT+GGG 0.577406 7_4:-46400675 Msa1157410:CDS
TAACATTATCATTCTTAACA+AGG 0.577731 7_4:+46400221 None:intergenic
AGGTGGAAACAGAAGAATCA+GGG 0.580400 7_4:+46401984 None:intergenic
TGATTCAAAACCGACAACCC+TGG 0.581707 7_4:+46400453 None:intergenic
CACTGCACAAGATAATAAGA+AGG 0.585137 7_4:-46400191 Msa1157410:CDS
ATTCATGCTGCTTATAGAAG+AGG 0.587032 7_4:+46400693 None:intergenic
CGTTTCCGTATACCAATGAA+AGG 0.592221 7_4:-46399174 Msa1157410:CDS
TTCCTTTCACCAGATGATCA+CGG 0.593746 7_4:+46400948 None:intergenic
TCGCTTCCTGACCAATGAAG+TGG 0.594131 7_4:+46400333 None:intergenic
CTGCTTCCAAAACTGAACGG+AGG 0.595798 7_4:-46400492 Msa1157410:CDS
TTATTGCAATGTCTCAAACA+TGG 0.596189 7_4:-46401142 Msa1157410:five_prime_UTR
GAAGCCCAAACAATCCATAG+TGG 0.599274 7_4:+46401248 None:intergenic
GAAAGAATGAAAATGGCCAC+AGG 0.599520 7_4:-46399893 Msa1157410:CDS
GTATATCTGTAGAAAATCGA+TGG 0.605410 7_4:-46399402 Msa1157410:intron
CCCAAGGTTGAATTGCAGAA+GGG 0.607886 7_4:-46402026 Msa1157410:five_prime_UTR
AGGTTCACTAGAAGTTTGAG+TGG 0.609481 7_4:-46399626 Msa1157410:CDS
TTGAATTGATCTTCAAACTG+TGG 0.610582 7_4:+46400533 None:intergenic
TGGGTTGTTGAAATTGCAGA+AGG 0.610753 7_4:+46402125 None:intergenic
CAATTTGATAAGGACCAAGA+AGG 0.612047 7_4:+46400136 None:intergenic
CTCTCCCCGAGTCATTTCAA+AGG 0.615400 7_4:-46400286 Msa1157410:CDS
AACGAAAGAGGAGAGCTCAC+AGG 0.615548 7_4:+46399941 None:intergenic
TCATGCTGCTTATAGAAGAG+GGG 0.617476 7_4:+46400695 None:intergenic
TTTCTGCTTCCAAAACTGAA+CGG 0.620837 7_4:-46400495 Msa1157410:CDS
GGTGACACTCCTGCATCCTG+TGG 0.622325 7_4:+46399877 None:intergenic
AATAGAGGCTTCATATCCCA+GGG 0.631162 7_4:-46400046 Msa1157410:CDS
ATCAATGTGATCCCTCAGCA+AGG 0.634775 7_4:+46400901 None:intergenic
TTTCTAATGAGGCATTCTTG+GGG 0.639052 7_4:+46400614 None:intergenic
GCAAGTGGCTATGTGTGCGG+TGG 0.645936 7_4:-46402314 None:intergenic
AACATGTAAGACCTTGCTGA+GGG 0.646250 7_4:-46400912 Msa1157410:five_prime_UTR
GGAGGCCAACTTCTGAAACG+AGG 0.650557 7_4:-46399231 Msa1157410:CDS
GAACATGTAAGACCTTGCTG+AGG 0.656132 7_4:-46400913 Msa1157410:five_prime_UTR
GCCGTGTTAAGTATTTCTGG+GGG 0.663682 7_4:-46399372 Msa1157410:CDS
CAAGTGGCTATGTGTGCGGT+GGG 0.663835 7_4:-46402313 None:intergenic
ATCGCCTTTGAAATGACTCG+GGG 0.672542 7_4:+46400282 None:intergenic
CTTAAGGGAATCAAGTGTTG+TGG 0.681377 7_4:-46399996 Msa1157410:CDS
GGGGAGAGCATACTGCTCAG+TGG 0.691084 7_4:+46400301 None:intergenic
GGTGTTGATTCTAGAGAACG+TGG 0.702836 7_4:+46399665 None:intergenic
AAAGCAAGTGGCTATGTGTG+CGG 0.712150 7_4:-46402317 None:intergenic
GGGTTTGCATCCGAAAACTG+AGG 0.716204 7_4:+46400715 None:intergenic
TGTGTGCGGTGGGAATGATG+AGG 0.731591 7_4:-46402303 Msa1157410:five_prime_UTR
GTTGTGGTCAGACCTCAAAG+TGG 0.734315 7_4:-46399980 Msa1157410:CDS
TCAGGAAATCTAGGACCGAG+GGG 0.735298 7_4:+46399914 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTTCTTTATGTT+TGG - chr7_4:46399105-46399124 Msa1157410:intron 10.0%
!!! GTTTTTTTAAACATAAACAT+TGG - chr7_4:46398556-46398575 Msa1157410:CDS 15.0%
!!! AAAATCAATTTTTTTGTTGT+GGG + chr7_4:46398708-46398727 None:intergenic 15.0%
!!! AAAAATCAATTTTTTTGTTG+TGG + chr7_4:46398709-46398728 None:intergenic 15.0%
!! AAAGATCAAATTAAACAAAA+GGG + chr7_4:46398738-46398757 None:intergenic 15.0%
!! AAAAGATCAAATTAAACAAA+AGG + chr7_4:46398739-46398758 None:intergenic 15.0%
!!! TTTTTCTATATTTCTTTTTC+AGG - chr7_4:46399233-46399252 Msa1157410:CDS 15.0%
!! TATTAAAATTGAACACTTAA+GGG - chr7_4:46400800-46400819 Msa1157410:exon 15.0%
!!! TAATTTGATCTTTTCTTTGT+TGG - chr7_4:46398745-46398764 Msa1157410:intron 20.0%
!!! AATTTGATCTTTTCTTTGTT+GGG - chr7_4:46398746-46398765 Msa1157410:intron 20.0%
!! TTGATCATATTGAATCTTAA+TGG - chr7_4:46398867-46398886 Msa1157410:intron 20.0%
!!! TAAAGAAACCTTTTGTTTAA+TGG - chr7_4:46399135-46399154 Msa1157410:intron 20.0%
!! AATAAATGCCATTAAACAAA+AGG + chr7_4:46399146-46399165 None:intergenic 20.0%
!! AACTTCATATTCATTAAACT+TGG + chr7_4:46399339-46399358 None:intergenic 20.0%
!!! TCTTCTTTTTTTATCGTTTT+AGG - chr7_4:46399961-46399980 Msa1157410:CDS 20.0%
!! AACATTATCATTCTTAACAA+GGG + chr7_4:46400592-46400611 None:intergenic 20.0%
!! TAACATTATCATTCTTAACA+AGG + chr7_4:46400593-46400612 None:intergenic 20.0%
!!! AAGTGTTCAATTTTAATAGT+TGG + chr7_4:46400798-46400817 None:intergenic 20.0%
!! CTATTAAAATTGAACACTTA+AGG - chr7_4:46400799-46400818 Msa1157410:exon 20.0%
!!! TCTAATTCATGTGATATTTT+AGG - chr7_4:46401014-46401033 Msa1157410:five_prime_UTR 20.0%
!! TTACTTTGTGTAAATGTTAA+GGG + chr7_4:46401786-46401805 None:intergenic 20.0%
!!! ACTATCCTTAGATATTTTTT+TGG - chr7_4:46401814-46401833 Msa1157410:intron 20.0%
!! TTTCACCAAAAAAATATCTA+AGG + chr7_4:46401822-46401841 None:intergenic 20.0%
!!! TTTTGTGAAGAAAAAAAAAG+AGG + chr7_4:46402054-46402073 None:intergenic 20.0%
! AAATGAAGAAGATGAGATAA+GGG + chr7_4:46398657-46398676 None:intergenic 25.0%
! AAAATGAAGAAGATGAGATA+AGG + chr7_4:46398658-46398677 None:intergenic 25.0%
!!! TTCATTGATTTTGTTCTTTC+AGG - chr7_4:46398904-46398923 Msa1157410:intron 25.0%
!!! TCATTGATTTTGTTCTTTCA+GGG - chr7_4:46398905-46398924 Msa1157410:intron 25.0%
!!! TTTCTTGTTATTGCATAAAG+AGG - chr7_4:46398975-46398994 Msa1157410:intron 25.0%
!!! TTCTTGTTATTGCATAAAGA+GGG - chr7_4:46398976-46398995 Msa1157410:intron 25.0%
!!! AAGAGGGTTTATAAGTTTTT+TGG - chr7_4:46398992-46399011 Msa1157410:intron 25.0%
! CAATCAAATTGAAGAAAATG+TGG + chr7_4:46399290-46399309 None:intergenic 25.0%
!!! TGAACTTTTGTTTCACTTTT+AGG - chr7_4:46399525-46399544 Msa1157410:intron 25.0%
!! CAATAATCATTTCTTTTGCA+GGG + chr7_4:46399655-46399674 None:intergenic 25.0%
! CTATGTTATGTTTATATCAG+AGG + chr7_4:46399698-46399717 None:intergenic 25.0%
! TTCCAATTGTAGTTGTTAAT+AGG - chr7_4:46399764-46399783 Msa1157410:CDS 25.0%
! TACCTATTAACAACTACAAT+TGG + chr7_4:46399769-46399788 None:intergenic 25.0%
! AATGTCTTATCAGAAACATT+TGG + chr7_4:46400225-46400244 None:intergenic 25.0%
!! GTTTCTGATAAGACATTTTA+TGG - chr7_4:46400228-46400247 Msa1157410:CDS 25.0%
! GATAATAAGAAGGCAAATAT+TGG - chr7_4:46400630-46400649 Msa1157410:CDS 25.0%
! ATTTCCTGAAAGAATGAAAA+TGG - chr7_4:46400911-46400930 Msa1157410:five_prime_UTR 25.0%
! ATTGCAATTCTTTATCTCTT+CGG + chr7_4:46400958-46400977 None:intergenic 25.0%
! AATTCTTTATCAAACAGGTT+TGG - chr7_4:46401559-46401578 Msa1157410:intron 25.0%
! TAGAAAAGATGATTCACAAA+TGG - chr7_4:46401606-46401625 Msa1157410:intron 25.0%
! CTTACTTTGTGTAAATGTTA+AGG + chr7_4:46401787-46401806 None:intergenic 25.0%
! CTTAACATTTACACAAAGTA+AGG - chr7_4:46401785-46401804 Msa1157410:intron 25.0%
! TAACTAAAAGTTCATTCTCT+TGG + chr7_4:46401866-46401885 None:intergenic 25.0%
! TATGTTTAGTGAGAAAGTTT+GGG - chr7_4:46401963-46401982 Msa1157410:intron 25.0%
! AATCTCTGACTAAATTGATA+TGG - chr7_4:46402300-46402319 Msa1157410:five_prime_UTR 25.0%
ACAGATGTTAATGTTGTTGT+GGG - chr7_4:46398579-46398598 Msa1157410:CDS 30.0%
! CAAATTAAACAAAAGGGTGT+TGG + chr7_4:46398732-46398751 None:intergenic 30.0%
TCGTTAATTATTTGATCCCA+AGG - chr7_4:46398769-46398788 Msa1157410:intron 30.0%
TTTGTTCTTTCAGGGTTTAA+AGG - chr7_4:46398913-46398932 Msa1157410:intron 30.0%
TTGTTCTTTCAGGGTTTAAA+GGG - chr7_4:46398914-46398933 Msa1157410:intron 30.0%
TTCTTCTGAATTTGTGATCT+CGG - chr7_4:46399485-46399504 Msa1157410:intron 30.0%
! GCAATAATCATTTCTTTTGC+AGG + chr7_4:46399656-46399675 None:intergenic 30.0%
TTATTGCAATGTCTCAAACA+TGG - chr7_4:46399669-46399688 Msa1157410:CDS 30.0%
ACATAGTATGAAGTTCTTGT+AGG - chr7_4:46399712-46399731 Msa1157410:CDS 30.0%
! TAGGTTTGGAATCATTTGAT+TGG - chr7_4:46399731-46399750 Msa1157410:CDS 30.0%
AGTGACTTAAGTATTAGAGA+TGG - chr7_4:46400002-46400021 Msa1157410:CDS 30.0%
GTGACTTAAGTATTAGAGAT+GGG - chr7_4:46400003-46400022 Msa1157410:CDS 30.0%
! TGATGAAAATGTCGAACTTT+TGG - chr7_4:46400053-46400072 Msa1157410:CDS 30.0%
! GATGAAAATGTCGAACTTTT+GGG - chr7_4:46400054-46400073 Msa1157410:CDS 30.0%
ATGAATAGTGTAAACACTCA+TGG - chr7_4:46400135-46400154 Msa1157410:CDS 30.0%
TGAATAGTGTAAACACTCAT+GGG - chr7_4:46400136-46400155 Msa1157410:CDS 30.0%
! ATTTTCAAATGAGGATCCAA+GGG + chr7_4:46400175-46400194 None:intergenic 30.0%
! AATTTTCAAATGAGGATCCA+AGG + chr7_4:46400176-46400195 None:intergenic 30.0%
! ATTTCTAATGAGGCATTCTT+GGG + chr7_4:46400201-46400220 None:intergenic 30.0%
AACATTTGGCATTTCTAATG+AGG + chr7_4:46400211-46400230 None:intergenic 30.0%
! TCTGATAAGACATTTTATGG+AGG - chr7_4:46400231-46400250 Msa1157410:CDS 30.0%
TTGAATTGATCTTCAAACTG+TGG + chr7_4:46400281-46400300 None:intergenic 30.0%
AGAACAAGTTCTTTAACTGA+TGG - chr7_4:46400384-46400403 Msa1157410:CDS 30.0%
AGATACTACCAAAAGAAGAA+TGG + chr7_4:46400437-46400456 None:intergenic 30.0%
!! GAATCCATTTTTCAAACTGA+TGG - chr7_4:46400729-46400748 Msa1157410:CDS 30.0%
TTCATTCTTTCAGGAAATCT+AGG + chr7_4:46400909-46400928 None:intergenic 30.0%
AACCTTGCAGAATTAGAAAT+GGG + chr7_4:46401170-46401189 None:intergenic 30.0%
CATAGATACAAACCTTAGTA+TGG + chr7_4:46401283-46401302 None:intergenic 30.0%
TTGTGCATGATTCTTTACTT+TGG - chr7_4:46401334-46401353 Msa1157410:intron 30.0%
GTATATCTGTAGAAAATCGA+TGG - chr7_4:46401409-46401428 Msa1157410:intron 30.0%
TTCTTCCTTTCATTGGTATA+CGG + chr7_4:46401645-46401664 None:intergenic 30.0%
CAAACTTTCTCACTAAACAT+AGG + chr7_4:46401964-46401983 None:intergenic 30.0%
CTATGTTTAGTGAGAAAGTT+TGG - chr7_4:46401962-46401981 Msa1157410:intron 30.0%
AAGGAAAGGTTTGATGTAAT+TGG - chr7_4:46401996-46402015 Msa1157410:five_prime_UTR 30.0%
AGGAAAGGTTTGATGTAATT+GGG - chr7_4:46401997-46402016 Msa1157410:five_prime_UTR 30.0%
AATCTTACTTTGGTACCAAT+TGG + chr7_4:46402266-46402285 None:intergenic 30.0%
ATTGGTACCAAAGTAAGATT+TGG - chr7_4:46402266-46402285 Msa1157410:five_prime_UTR 30.0%
CATATTGCCAAATCTTACTT+TGG + chr7_4:46402276-46402295 None:intergenic 30.0%
CAAAGTAAGATTTGGCAATA+TGG - chr7_4:46402274-46402293 Msa1157410:five_prime_UTR 30.0%
GACAGATGTTAATGTTGTTG+TGG - chr7_4:46398578-46398597 Msa1157410:CDS 35.0%
GAAGATGAGATAAGGGTTAA+GGG + chr7_4:46398650-46398669 None:intergenic 35.0%
AGAAGATGAGATAAGGGTTA+AGG + chr7_4:46398651-46398670 None:intergenic 35.0%
TAGATGATAGCTACAGTTTG+AGG - chr7_4:46399056-46399075 Msa1157410:intron 35.0%
AGATGATAGCTACAGTTTGA+GGG - chr7_4:46399057-46399076 Msa1157410:intron 35.0%
! ATCATCCACTATGGATTGTT+TGG - chr7_4:46399558-46399577 Msa1157410:CDS 35.0%
! TCATCCACTATGGATTGTTT+GGG - chr7_4:46399559-46399578 Msa1157410:CDS 35.0%
ATATATCCAAGAACTGCAAC+TGG + chr7_4:46399623-46399642 None:intergenic 35.0%
GTATGAAGTTCTTGTAGGTT+TGG - chr7_4:46399717-46399736 Msa1157410:CDS 35.0%
TAGTTGTTAGCTGATGTTGT+AGG - chr7_4:46399835-46399854 Msa1157410:CDS 35.0%
! TTTTCATCAGCTTCACTTGA+TGG + chr7_4:46400042-46400061 None:intergenic 35.0%
! TTCATGCTGCTTATAGAAGA+GGG + chr7_4:46400120-46400139 None:intergenic 35.0%
! ATTCATGCTGCTTATAGAAG+AGG + chr7_4:46400121-46400140 None:intergenic 35.0%
! CTTGGGGAAATTTTCAAATG+AGG + chr7_4:46400184-46400203 None:intergenic 35.0%
! TTTCTAATGAGGCATTCTTG+GGG + chr7_4:46400200-46400219 None:intergenic 35.0%
! CATTTCTAATGAGGCATTCT+TGG + chr7_4:46400202-46400221 None:intergenic 35.0%
TTTCTGCTTCCAAAACTGAA+CGG - chr7_4:46400316-46400335 Msa1157410:CDS 35.0%
! GCAAATCTCCATTCTTCTTT+TGG - chr7_4:46400426-46400445 Msa1157410:CDS 35.0%
CATAGGATGCAGAAATAATG+AGG - chr7_4:46400560-46400579 Msa1157410:CDS 35.0%
CTTCTTATTATCTTGTGCAG+TGG + chr7_4:46400622-46400641 None:intergenic 35.0%
CACTGCACAAGATAATAAGA+AGG - chr7_4:46400620-46400639 Msa1157410:CDS 35.0%
CAATTTGATAAGGACCAAGA+AGG + chr7_4:46400678-46400697 None:intergenic 35.0%
CTGCTCAAAGCAATTTGATA+AGG + chr7_4:46400688-46400707 None:intergenic 35.0%
! TTGCTTTGAGCAGAAAAACA+TGG - chr7_4:46400695-46400714 Msa1157410:CDS 35.0%
AGGACCATCAGTTTGAAAAA+TGG + chr7_4:46400736-46400755 None:intergenic 35.0%
!! AAGCCTCTATTTTCAAGCAA+AGG + chr7_4:46400756-46400775 None:intergenic 35.0%
AGATGGACAGAAATCTTTGA+AGG + chr7_4:46401096-46401115 None:intergenic 35.0%
GAACCTTGCAGAATTAGAAA+TGG + chr7_4:46401171-46401190 None:intergenic 35.0%
! TTTGAGGAGTCTCTTTTATC+TGG - chr7_4:46401239-46401258 Msa1157410:five_prime_UTR 35.0%
TATGGTTTCCAGAAACAAAC+CGG + chr7_4:46401265-46401284 None:intergenic 35.0%
!! TGTTTCTGGAAACCATACTA+AGG - chr7_4:46401268-46401287 Msa1157410:intron 35.0%
GAAAAGAAACAAGTATCCGT+AGG + chr7_4:46401387-46401406 None:intergenic 35.0%
TTGCCGTGTTAAGTATTTCT+GGG - chr7_4:46401437-46401456 Msa1157410:intron 35.0%
AATGGAAGCTTCTGTGATTT+AGG + chr7_4:46401475-46401494 None:intergenic 35.0%
TCGACACTAGTAACAGAAAA+TGG + chr7_4:46401493-46401512 None:intergenic 35.0%
!! TTTTCTGTTACTAGTGTCGA+TGG - chr7_4:46401493-46401512 Msa1157410:intron 35.0%
TTATGCATCCATAGATCTTG+CGG - chr7_4:46401534-46401553 Msa1157410:intron 35.0%
CGGGAAATTCTTTATCAAAC+AGG - chr7_4:46401554-46401573 Msa1157410:intron 35.0%
TCTTTATCAAACAGGTTTGG+AGG - chr7_4:46401562-46401581 Msa1157410:intron 35.0%
CTTTCATTGGTATACGGAAA+CGG + chr7_4:46401639-46401658 None:intergenic 35.0%
AGCTGAATTCTTCCTTTCAT+TGG + chr7_4:46401652-46401671 None:intergenic 35.0%
AATGAAAGGAAGAATTCAGC+TGG - chr7_4:46401651-46401670 Msa1157410:intron 35.0%
GACATTCATGTCAGATACAA+GGG + chr7_4:46401711-46401730 None:intergenic 35.0%
AGACATTCATGTCAGATACA+AGG + chr7_4:46401712-46401731 None:intergenic 35.0%
TCCATACAGATATAAGACGA+AGG + chr7_4:46401754-46401773 None:intergenic 35.0%
CACTAATATGTTTGGAAGAC+GGG + chr7_4:46402078-46402097 None:intergenic 35.0%
CCACTAATATGTTTGGAAGA+CGG + chr7_4:46402079-46402098 None:intergenic 35.0%
! TGAAGCACCACTAATATGTT+TGG + chr7_4:46402086-46402105 None:intergenic 35.0%
AGCAATCAAAGGAAAGAGTA+AGG + chr7_4:46402169-46402188 None:intergenic 35.0%
TTGCAAAAGAATGTGTGAAG+AGG + chr7_4:46402224-46402243 None:intergenic 35.0%
TGGGTTGTTGAAATTGCAGA+AGG + chr7_4:46398689-46398708 None:intergenic 40.0%
AGGTGGAAACAGAAGAATCA+GGG + chr7_4:46398830-46398849 None:intergenic 40.0%
AAGGTGGAAACAGAAGAATC+AGG + chr7_4:46398831-46398850 None:intergenic 40.0%
CTTCTGTTTCCACCTTTCAT+CGG - chr7_4:46398835-46398854 Msa1157410:intron 40.0%
! CAAAAAAACGCACCGATGAA+AGG + chr7_4:46398850-46398869 None:intergenic 40.0%
GATGATAGCTACAGTTTGAG+GGG - chr7_4:46399058-46399077 Msa1157410:intron 40.0%
!! CATAGTGGATGATCAGTTCA+TGG + chr7_4:46399551-46399570 None:intergenic 40.0%
CATGAACTGATCATCCACTA+TGG - chr7_4:46399549-46399568 Msa1157410:CDS 40.0%
TTTGTTCCAGTTGCAGTTCT+TGG - chr7_4:46399614-46399633 Msa1157410:CDS 40.0%
! ACTGACACGCTTACTAGTTT+CGG + chr7_4:46399809-46399828 None:intergenic 40.0%
TTCCTTTCACCAGATGATCA+CGG + chr7_4:46399866-46399885 None:intergenic 40.0%
AACATGTAAGACCTTGCTGA+GGG - chr7_4:46399899-46399918 Msa1157410:CDS 40.0%
! GCTTCACTTGATGGTATTTG+TGG + chr7_4:46400033-46400052 None:intergenic 40.0%
!! AAATGTCGAACTTTTGGGTG+TGG - chr7_4:46400059-46400078 Msa1157410:CDS 40.0%
! TCATGCTGCTTATAGAAGAG+GGG + chr7_4:46400119-46400138 None:intergenic 40.0%
GATCTTCAAACTGTGGACAT+TGG + chr7_4:46400274-46400293 None:intergenic 40.0%
!! GAAGAATGGAGATTTGCTAC+TGG + chr7_4:46400423-46400442 None:intergenic 40.0%
!! AATCGCCTTTGAAATGACTC+GGG + chr7_4:46400533-46400552 None:intergenic 40.0%
!! GAATCGCCTTTGAAATGACT+CGG + chr7_4:46400534-46400553 None:intergenic 40.0%
AAAGGCGATTCTCTTGACAT+AGG - chr7_4:46400543-46400562 Msa1157410:CDS 40.0%
GCAGTTATACAATGCCTTCT+TGG - chr7_4:46400661-46400680 Msa1157410:CDS 40.0%
GGTCCTTTGCTTGAAAATAG+AGG - chr7_4:46400750-46400769 Msa1157410:CDS 40.0%
AAATAGAGGCTTCATATCCC+AGG - chr7_4:46400764-46400783 Msa1157410:CDS 40.0%
AATAGAGGCTTCATATCCCA+GGG - chr7_4:46400765-46400784 Msa1157410:CDS 40.0%
!! AATAGTTGGTGAACTACCCT+GGG + chr7_4:46400784-46400803 None:intergenic 40.0%
!! TAATAGTTGGTGAACTACCC+TGG + chr7_4:46400785-46400804 None:intergenic 40.0%
! CTTAAGGGAATCAAGTGTTG+TGG - chr7_4:46400815-46400834 Msa1157410:five_prime_UTR 40.0%
! ACAGATATTACGCCACTTTG+AGG + chr7_4:46400846-46400865 None:intergenic 40.0%
!! GTGGCCATTTTCATTCTTTC+AGG + chr7_4:46400918-46400937 None:intergenic 40.0%
GAAAGAATGAAAATGGCCAC+AGG - chr7_4:46400918-46400937 Msa1157410:five_prime_UTR 40.0%
AGATTTCTGTCCATCTTCTC+TGG - chr7_4:46401100-46401119 Msa1157410:five_prime_UTR 40.0%
CACCCATTTCTAATTCTGCA+AGG - chr7_4:46401165-46401184 Msa1157410:five_prime_UTR 40.0%
AGGTTCACTAGAAGTTTGAG+TGG - chr7_4:46401185-46401204 Msa1157410:five_prime_UTR 40.0%
ACTTTCAGTCAGAAGGTCTT+TGG - chr7_4:46401208-46401227 Msa1157410:five_prime_UTR 40.0%
! GTCTTTGGTTGGTTCATTTG+AGG - chr7_4:46401223-46401242 Msa1157410:five_prime_UTR 40.0%
! TTTTGACCGAATCTGACCTA+CGG - chr7_4:46401368-46401387 Msa1157410:intron 40.0%
AAGTATCCGTAGGTCAGATT+CGG + chr7_4:46401377-46401396 None:intergenic 40.0%
CTTGCCGTGTTAAGTATTTC+TGG - chr7_4:46401436-46401455 Msa1157410:intron 40.0%
! TGCCGTGTTAAGTATTTCTG+GGG - chr7_4:46401438-46401457 Msa1157410:intron 40.0%
TCCCCCAGAAATACTTAACA+CGG + chr7_4:46401443-46401462 None:intergenic 40.0%
TATGCATCCATAGATCTTGC+GGG - chr7_4:46401535-46401554 Msa1157410:intron 40.0%
AGAATTTCCCGCAAGATCTA+TGG + chr7_4:46401545-46401564 None:intergenic 40.0%
CGTTTCCGTATACCAATGAA+AGG - chr7_4:46401637-46401656 Msa1157410:intron 40.0%
! TATAAGACGAAGGCTCTAAC+AGG + chr7_4:46401744-46401763 None:intergenic 40.0%
GCCTTCGTCTTATATCTGTA+TGG - chr7_4:46401750-46401769 Msa1157410:intron 40.0%
GTTTAGTGAGAAAGTTTGGG+AGG - chr7_4:46401966-46401985 Msa1157410:intron 40.0%
AAGTTTGGGAGGAAAGAGAA+AGG - chr7_4:46401977-46401996 Msa1157410:five_prime_UTR 40.0%
CCGTCTTCCAAACATATTAG+TGG - chr7_4:46402076-46402095 Msa1157410:five_prime_UTR 40.0%
GATTTGAGTGACATGCCAAT+TGG - chr7_4:46402248-46402267 Msa1157410:five_prime_UTR 40.0%
TCCCAAGGTTGAATTGCAGA+AGG - chr7_4:46398784-46398803 Msa1157410:intron 45.0%
CCCTTCTGCAATTCAACCTT+GGG + chr7_4:46398788-46398807 None:intergenic 45.0%
CCCAAGGTTGAATTGCAGAA+GGG - chr7_4:46398785-46398804 Msa1157410:intron 45.0%
ACCCTTCTGCAATTCAACCT+TGG + chr7_4:46398789-46398808 None:intergenic 45.0%
! AAAAACGCACCGATGAAAGG+TGG + chr7_4:46398847-46398866 None:intergenic 45.0%
GAAGCCCAAACAATCCATAG+TGG + chr7_4:46399566-46399585 None:intergenic 45.0%
TAGGTCTTACCGTGATCATC+TGG - chr7_4:46399854-46399873 Msa1157410:CDS 45.0%
TACCGTGATCATCTGGTGAA+AGG - chr7_4:46399861-46399880 Msa1157410:CDS 45.0%
GAACATGTAAGACCTTGCTG+AGG - chr7_4:46399898-46399917 Msa1157410:CDS 45.0%
ATCAATGTGATCCCTCAGCA+AGG + chr7_4:46399913-46399932 None:intergenic 45.0%
!! CTTTTGGGTGTGGTTTCAAG+CGG - chr7_4:46400069-46400088 Msa1157410:CDS 45.0%
! GACATTTTATGGAGGAGCGA+TGG - chr7_4:46400239-46400258 Msa1157410:CDS 45.0%
TGCTTCCAAAACTGAACGGA+GGG - chr7_4:46400320-46400339 Msa1157410:CDS 45.0%
! AAGAACCCTCCGTTCAGTTT+TGG + chr7_4:46400328-46400347 None:intergenic 45.0%
TGATTCAAAACCGACAACCC+TGG + chr7_4:46400361-46400380 None:intergenic 45.0%
!!! AGGGTTGTCGGTTTTGAATC+AGG - chr7_4:46400360-46400379 Msa1157410:CDS 45.0%
GACCAATGAAGTGGCAGATT+CGG + chr7_4:46400472-46400491 None:intergenic 45.0%
! AATCTGCCACTTCATTGGTC+AGG - chr7_4:46400472-46400491 Msa1157410:CDS 45.0%
!! ATCGCCTTTGAAATGACTCG+GGG + chr7_4:46400532-46400551 None:intergenic 45.0%
! TTCAGGAAATCTAGGACCGA+GGG + chr7_4:46400901-46400920 None:intergenic 45.0%
! TTTCAGGAAATCTAGGACCG+AGG + chr7_4:46400902-46400921 None:intergenic 45.0%
GAAATGTCGTCCAGAGAAGA+TGG + chr7_4:46401113-46401132 None:intergenic 45.0%
!! GGTGTTGATTCTAGAGAACG+TGG + chr7_4:46401149-46401168 None:intergenic 45.0%
! TGAGTGGACTTTCAGTCAGA+AGG - chr7_4:46401201-46401220 Msa1157410:five_prime_UTR 45.0%
TCAGTCAGAAGGTCTTTGGT+TGG - chr7_4:46401212-46401231 Msa1157410:five_prime_UTR 45.0%
! AGGAGTCTCTTTTATCTGGC+CGG - chr7_4:46401243-46401262 Msa1157410:five_prime_UTR 45.0%
!! TTATCTGGCCGGTTTGTTTC+TGG - chr7_4:46401254-46401273 Msa1157410:five_prime_UTR 45.0%
!! GCCGTGTTAAGTATTTCTGG+GGG - chr7_4:46401439-46401458 Msa1157410:intron 45.0%
TAAGCCCTCGTTTCAGAAGT+TGG + chr7_4:46401588-46401607 None:intergenic 45.0%
TGGGAGGAAAGAGAAAGGAA+AGG - chr7_4:46401982-46402001 Msa1157410:five_prime_UTR 45.0%
TTCCTTTGATTGCTCTCTGC+AGG - chr7_4:46402175-46402194 Msa1157410:five_prime_UTR 45.0%
! GTGTGAAGAGGAGTCTTTTC+TGG + chr7_4:46402212-46402231 None:intergenic 45.0%
GGGTTTGCATCCGAAAACTG+AGG + chr7_4:46400099-46400118 None:intergenic 50.0%
CTGCTTCCAAAACTGAACGG+AGG - chr7_4:46400319-46400338 Msa1157410:CDS 50.0%
GGTTCTTACTCCTGCTTCCA+GGG - chr7_4:46400341-46400360 Msa1157410:CDS 50.0%
!! AGTGGCAGATTCGGTGTCAT+TGG + chr7_4:46400463-46400482 None:intergenic 50.0%
! CACCGAATCTGCCACTTCAT+TGG - chr7_4:46400467-46400486 Msa1157410:CDS 50.0%
TCGCTTCCTGACCAATGAAG+TGG + chr7_4:46400481-46400500 None:intergenic 50.0%
CTCTCCCCGAGTCATTTCAA+AGG - chr7_4:46400525-46400544 Msa1157410:CDS 50.0%
GTTGTGGTCAGACCTCAAAG+TGG - chr7_4:46400831-46400850 Msa1157410:five_prime_UTR 50.0%
AACGAAAGAGGAGAGCTCAC+AGG + chr7_4:46400873-46400892 None:intergenic 50.0%
! TCAGGAAATCTAGGACCGAG+GGG + chr7_4:46400900-46400919 None:intergenic 50.0%
TGAAAATGGCCACAGGATGC+AGG - chr7_4:46400925-46400944 Msa1157410:five_prime_UTR 50.0%
!! GAGGCCAACTTCTGAAACGA+GGG - chr7_4:46401581-46401600 Msa1157410:intron 50.0%
CACCTGCAGAGAGCAATCAA+AGG + chr7_4:46402180-46402199 None:intergenic 50.0%
TGTGTGCGGTGGGAATGATG+AGG - chr7_4:46398508-46398527 Msa1157410:CDS 55.0%
GGCTTCATCTGCTGCGAGTA+TGG - chr7_4:46399580-46399599 Msa1157410:CDS 55.0%
! AAGCGGCTCGCCTCAGTTTT+CGG - chr7_4:46400086-46400105 Msa1157410:CDS 55.0%
GGGTTCTTACTCCTGCTTCC+AGG - chr7_4:46400340-46400359 Msa1157410:CDS 55.0%
ACTCCTGCTTCCAGGGTTGT+CGG - chr7_4:46400348-46400367 Msa1157410:CDS 55.0%
AAACCGACAACCCTGGAAGC+AGG + chr7_4:46400354-46400373 None:intergenic 55.0%
CCTCTTTCGTTGTCACCCCT+CGG - chr7_4:46400882-46400901 Msa1157410:five_prime_UTR 55.0%
!! GGAGGCCAACTTCTGAAACG+AGG - chr7_4:46401580-46401599 Msa1157410:intron 55.0%
!! GAGAGCATTGAGAGTGCGCA+TGG + chr7_4:46402032-46402051 None:intergenic 55.0%
GGGTGTGCTGCATGTACCCT+TGG - chr7_4:46400156-46400175 Msa1157410:CDS 60.0%
! GGGGAGAGCATACTGCTCAG+TGG + chr7_4:46400513-46400532 None:intergenic 60.0%
CCGAGGGGTGACAACGAAAG+AGG + chr7_4:46400885-46400904 None:intergenic 60.0%
GGTGACACTCCTGCATCCTG+TGG + chr7_4:46400937-46400956 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46398502 46402331 46398502 ID=Msa1157410;Name=Msa1157410
chr7_4 mRNA 46398502 46402331 46398502 ID=Msa1157410-mRNA-1;Parent=Msa1157410;Name=Msa1157410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=829|0.66|0.5|1|0.66|0.5|4|0|551
chr7_4 exon 46398502 46398636 46398502 ID=Msa1157410-mRNA-1:exon:12171;Parent=Msa1157410-mRNA-1
chr7_4 exon 46399161 46399412 46399161 ID=Msa1157410-mRNA-1:exon:12170;Parent=Msa1157410-mRNA-1
chr7_4 exon 46399544 46401286 46399544 ID=Msa1157410-mRNA-1:exon:12169;Parent=Msa1157410-mRNA-1
chr7_4 exon 46401977 46402331 46401977 ID=Msa1157410-mRNA-1:exon:12168;Parent=Msa1157410-mRNA-1
chr7_4 five_prime_UTR 46401977 46402331 46401977 ID=Msa1157410-mRNA-1:five_prime_utr;Parent=Msa1157410-mRNA-1
chr7_4 five_prime_UTR 46400813 46401286 46400813 ID=Msa1157410-mRNA-1:five_prime_utr;Parent=Msa1157410-mRNA-1
chr7_4 CDS 46399544 46400812 46399544 ID=Msa1157410-mRNA-1:cds;Parent=Msa1157410-mRNA-1
chr7_4 CDS 46399161 46399412 46399161 ID=Msa1157410-mRNA-1:cds;Parent=Msa1157410-mRNA-1
chr7_4 CDS 46398502 46398636 46398502 ID=Msa1157410-mRNA-1:cds;Parent=Msa1157410-mRNA-1
Gene Sequence

>Msa1157410

ATGGGTTTGCCACAAATACCATCAAGTGAAGCTGATGAAAATGTCGAACTTTTGGGTGTGGTTTCAAGCGGCTCGCCTCAGTTTTCGGATGCAAACCCCTCTTCTATAAGCAGCATGAATAGTGTAAACACTCATGGGTGTGCTGCATGTACCCTTGGATCCTCATTTGAAAATTTCCCCAAGAATGCCTCATTAGAAATGCCAAATGTTTCTGATAAGACATTTTATGGAGGAGCGATGGAAGTCACTTCCAATGTCCACAGTTTGAAGATCAATTCAACAGATAGAAGTAATCTTTCTGCTTCCAAAACTGAACGGAGGGTTCTTACTCCTGCTTCCAGGGTTGTCGGTTTTGAATCAGGCAGAACAAGTTCTTTAACTGATGGAATCGCTGAAGTTCCAGTAGCAAATCTCCATTCTTCTTTTGGTAGTATCTCAGCCAATGACACCGAATCTGCCACTTCATTGGTCAGGAAGCGACTTTTATCTCCACTGAGCAGTATGCTCTCCCCGAGTCATTTCAAAGGCGATTCTCTTGACATAGGATGCAGAAATAATGAGGCTTTCTCCCTTGTTAAGAATGATAATGTTAGAAAGTCCACTGCACAAGATAATAAGAAGGCAAATATTGGATGTAAAAGCAGTTATACAATGCCTTCTTGGTCCTTATCAAATTGCTTTGAGCAGAAAAACATGGCACAGAGTAGAGAATCCATTTTTCAAACTGATGGTCCTTTGCTTGAAAATAGAGGCTTCATATCCCAGGGTAGTTCACCAACTATTAAAATTGAACACTTAAGGGAATCAAGTGTTGTGGTCAGACCTCAAAGTGGCGTAATATCTGTATCACCTGTGAGCTCTCCTCTTTCGTTGTCACCCCTCGGTCCTAGATTTCCTGAAAGAATGAAAATGGCCACAGGATGCAGGAGTGTCACCGAAGAGATAAAGAATTGCAATATAACTTTAAGCAGTATAGAAGAATCACTAGAGAATTCTAATTCATGTGATATTTTAGGTCATAAAGATGATGATTTAAAATTTTCACGTAAATCTTTTGAAGATGTTGAATTCTCCTTCAAAGATTTCTGTCCATCTTCTCTGGACGACATTTCTTACATGAATTGTCCACGTTCTCTAGAATCAACACCCATTTCTAATTCTGCAAGGTTCACTAGAAGTTTGAGTGGACTTTCAGTCAGAAGGTCTTTGGTTGGTTCATTTGAGGAGTCTCTTTTATCTGGCCGGTTTGTTTCTGGAAACCATACTAAGAAAATCGATGGTTTTCTTGCCGTGTTAAGTATTTCTGGGGGAAACTTCTCTCCTAAATCACAGAAGCTTCCATTTTCTGTTACTAGTGTCGATGGAGATTGCTATCTATTGTATTATGCATCCATAGATCTTGCGGGAAATTCTTTATCAAACAGGTTTGGAGGCCAACTTCTGAAACGAGGGCTTAGAAAAGATGATTCACAAATGGTCAAAAGCCGTTTCCGTATACCAATGAAAGGAAGAATTCAGCTGGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACATTCTTTTGCAACTATGATTTGAGTGACATGCCAATTGGTACCAAAGTAAGATTTGGCAATATGGATGAATCTCTGACTAAATTGATATGGACATTTTAA
Protein sequence

>Msa1157410

MGLPQIPSSEADENVELLGVVSSGSPQFSDANPSSISSMNSVNTHGCAACTLGSSFENFPKNASLEMPNVSDKTFYGGAMEVTSNVHSLKINSTDRSNLSASKTERRVLTPASRVVGFESGRTSSLTDGIAEVPVANLHSSFGSISANDTESATSLVRKRLLSPLSSMLSPSHFKGDSLDIGCRNNEAFSLVKNDNVRKSTAQDNKKANIGCKSSYTMPSWSLSNCFEQKNMAQSRESIFQTDGPLLENRGFISQGSSPTIKIEHLRESSVVVRPQSGVISVSPVSSPLSLSPLGPRFPERMKMATGCRSVTEEIKNCNITLSSIEESLENSNSCDILGHKDDDLKFSRKSFEDVEFSFKDFCPSSLDDISYMNCPRSLESTPISNSARFTRSLSGLSVRRSLVGSFEESLLSGRFVSGNHTKKIDGFLAVLSISGGNFSPKSQKLPFSVTSVDGDCYLLYYASIDLAGNSLSNRFGGQLLKRGLRKDDSQMVKSRFRIPMKGRIQLVLSNPEKTPLHTFFCNYDLSDMPIGTKVRFGNMDESLTKLIWTF*