AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0788850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0788850 MtrunA17_Chr5g0404121 97.717 876 9 1 1 876 184 1048 0.0 1764
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0788850 AT1G63810.2 61.320 879 321 8 1 875 190 1053 0.0 1121
Msa0788850 AT1G63810.1 61.320 879 321 8 1 875 190 1053 0.0 1121

Find 219 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTACAGAATAAACTTTA+AGG 0.136067 5_2:-76490297 Msa0788850:intron
CTCTTGAATTTCGGAAGTTT+TGG 0.182977 5_2:-76489808 Msa0788850:CDS
CTAAAGAATCATGCCATAAT+TGG 0.204880 5_2:+76486223 None:intergenic
ATTGCATCATAGTTATTTAA+AGG 0.206584 5_2:+76486925 None:intergenic
AAAGTATAATTCTAGTATTT+TGG 0.215152 5_2:-76492002 Msa0788850:CDS
TTTCCACCAAATTCCAATTA+TGG 0.217606 5_2:-76486236 Msa0788850:CDS
GTTGATGAAACTCACATTTC+AGG 0.219849 5_2:-76487093 Msa0788850:CDS
AGAGGAGGCCATTGAGCTTT+TGG 0.235529 5_2:-76488233 Msa0788850:CDS
ATCATGCCATAATTGGAATT+TGG 0.241537 5_2:+76486230 None:intergenic
CTCTTTACAGCTGGAAGGTT+CGG 0.248790 5_2:-76488873 Msa0788850:intron
CTAACTATTGGTCCATATAT+TGG 0.253210 5_2:+76488386 None:intergenic
CAAATCTTTAGGCAACAAAA+AGG 0.253875 5_2:+76486448 None:intergenic
CAATTATGGCATGATTCTTT+AGG 0.254065 5_2:-76486222 Msa0788850:CDS
CAAAATTTATTCGAGTAATA+TGG 0.257083 5_2:-76490169 Msa0788850:CDS
TCTAGTTACCTTATTCAAAT+AGG 0.261971 5_2:-76488809 Msa0788850:CDS
GGATCAACTTGATTTCTCTT+TGG 0.264364 5_2:-76489504 Msa0788850:CDS
CAGGACAGAATGCAACTTAA+AGG 0.272055 5_2:-76490937 Msa0788850:CDS
ATCATTAACAGGAACTTAAA+AGG 0.273761 5_2:-76487148 Msa0788850:intron
ACCTTATTCAAATAGGAAAA+AGG 0.279233 5_2:-76488802 Msa0788850:intron
ACCACTAGAAATTATGATTC+AGG 0.279774 5_2:-76488970 Msa0788850:intron
TCTTTACAGCTGGAAGGTTC+GGG 0.294108 5_2:-76488872 Msa0788850:intron
GTGATTTGGAGAAAGCATTT+AGG 0.296603 5_2:-76489968 Msa0788850:CDS
CGCATTACCTTGAACTTCAT+TGG 0.302825 5_2:-76491667 Msa0788850:intron
AGCTGGAAGGTTCGGGGCAC+TGG 0.306980 5_2:-76488865 Msa0788850:CDS
AGAGGCTTTAATTCTACTTA+AGG 0.309474 5_2:-76491915 Msa0788850:intron
CAACATGCTAGCATGATTAA+TGG 0.310323 5_2:-76488425 Msa0788850:CDS
CGCGAGCAGGGAGCATTAAA+TGG 0.312494 5_2:+76488184 None:intergenic
GATTACCATTTACAGCATTC+AGG 0.313847 5_2:-76489085 Msa0788850:intron
AGGAATTTCAGTCAGTGATT+TGG 0.322508 5_2:-76489982 Msa0788850:CDS
GTGCTTTATCAAAGATTTAG+AGG 0.327391 5_2:-76486366 Msa0788850:intron
CTCACATTTCAGGAGGAAAT+TGG 0.329536 5_2:-76487083 Msa0788850:CDS
CAAAGTCGTTACCCAATATA+TGG 0.332233 5_2:-76488398 Msa0788850:CDS
TGATTGGACTTATTCTCCTT+TGG 0.337140 5_2:-76487846 Msa0788850:CDS
TTAAACGCTCACCTAACTAT+TGG 0.344725 5_2:+76488374 None:intergenic
TCAAGCAGGCTCTTGAATTT+CGG 0.348380 5_2:-76489817 Msa0788850:intron
GATAAAGAGCCCTTGTTCAT+AGG 0.350370 5_2:-76490002 Msa0788850:CDS
CTTTACAATATATAAGAATC+TGG 0.351346 5_2:+76485690 None:intergenic
CTTGATTTCTCTTTGGCTCA+TGG 0.352968 5_2:-76489497 Msa0788850:CDS
TATTGAAGGCCTCCCTTTGA+AGG 0.354251 5_2:-76489316 Msa0788850:CDS
TACTGGCACACCTTGCTTCT+AGG 0.357704 5_2:-76491729 Msa0788850:CDS
GCAAAGCTTGTTGATGTTGA+TGG 0.365371 5_2:-76492229 Msa0788850:five_prime_UTR
TCTTACAGAATAAACTTTAA+GGG 0.366114 5_2:-76490296 Msa0788850:intron
TCTTTGATAAAGCACCTTGA+TGG 0.369158 5_2:+76486374 None:intergenic
AACATTCATAATTCAAAGAA+TGG 0.374061 5_2:-76492136 Msa0788850:intron
TTAGCTAGAAGATGAGGTTC+AGG 0.374662 5_2:+76489044 None:intergenic
CTTTAATTTGCGAGCCTTGG+TGG 0.377383 5_2:+76485907 None:intergenic
TAGTATGGGAATGTCAGAAA+TGG 0.383085 5_2:-76489613 Msa0788850:CDS
TAACTATTGGTCCATATATT+GGG 0.384799 5_2:+76488387 None:intergenic
ATATTTCCTTCGCCTTCCTT+TGG 0.385238 5_2:+76491349 None:intergenic
GTGTAGAGGTGGTGGATTTG+AGG 0.391006 5_2:-76490698 Msa0788850:CDS
CTTCTAGGCAACAAATTAGT+AGG 0.395356 5_2:-76491714 Msa0788850:CDS
CCTCTCCCACCTTCAGAGTT+CGG 0.395834 5_2:-76485736 Msa0788850:three_prime_UTR
TATGTTCATGATTGCCTGAA+TGG 0.401910 5_2:-76491769 Msa0788850:CDS
AAGCGTTTGCGTCTTATTGA+AGG 0.404458 5_2:-76489330 Msa0788850:CDS
GCACAAGAGTTTGTGTAGAT+TGG 0.407097 5_2:-76485773 Msa0788850:three_prime_UTR
GTCTTTAAATCTTCTAAGCT+CGG 0.409788 5_2:+76489775 None:intergenic
TTTAACAGCATAGTCAATCT+TGG 0.412420 5_2:+76490663 None:intergenic
GCTCCCTGCTCGCGGATCAC+CGG 0.412876 5_2:-76488175 Msa0788850:CDS
TACATTCTTTGAGTAAACTA+AGG 0.416276 5_2:+76488593 None:intergenic
TTAAATATGATTATTGTATG+AGG 0.416890 5_2:-76490645 Msa0788850:intron
TCTTCTTTACTTTCAGCATT+CGG 0.417000 5_2:+76489930 None:intergenic
AACGGATCCGTATTTGTGTT+AGG 0.417011 5_2:+76485549 None:intergenic
GCATTTAGGATGGTTGATAT+TGG 0.417330 5_2:-76489954 Msa0788850:CDS
TCAATTGCAATTTCATCCAT+TGG 0.417715 5_2:+76488842 None:intergenic
CGACTTTAATTTGCGAGCCT+TGG 0.420314 5_2:+76485904 None:intergenic
AACAAGGAGCTATATGCATC+AGG 0.422250 5_2:-76490272 Msa0788850:CDS
CGCGGATCACCGGGTTTATG+AGG 0.428082 5_2:-76488165 Msa0788850:intron
CTCCCTGCTCGCGGATCACC+GGG 0.429436 5_2:-76488174 Msa0788850:CDS
CAATATATGGACCAATAGTT+AGG 0.435471 5_2:-76488385 Msa0788850:intron
TTTGTTGCCTAAAGATTTGA+AGG 0.436842 5_2:-76486444 Msa0788850:CDS
AACACAAATACGGATCCGTT+TGG 0.437237 5_2:-76485546 Msa0788850:three_prime_UTR
CGCCTACCCTTCAAATCTTT+AGG 0.441459 5_2:+76486437 None:intergenic
CAATTTACCTCCCATCTGTA+TGG 0.442153 5_2:+76487059 None:intergenic
CACAAACTCTTGTGCTCTAC+CGG 0.443543 5_2:+76485781 None:intergenic
GATGGATGACACATGACAAC+TGG 0.448791 5_2:+76490907 None:intergenic
CTAAAAGCTGTAGGTGAAGT+TGG 0.449085 5_2:-76485964 Msa0788850:CDS
AGTATGGGAATGTCAGAAAT+GGG 0.450581 5_2:-76489612 Msa0788850:CDS
TGTAGGGCCAGTGATGTTCT+TGG 0.450632 5_2:-76487564 Msa0788850:CDS
ACAAAAGAAGGTTAGAGATC+TGG 0.451208 5_2:+76491314 None:intergenic
AGGTTCGGGGCACTGGCCAA+TGG 0.459859 5_2:-76488858 Msa0788850:CDS
TTCTGCTTGTTTGGTAGAGG+AGG 0.459986 5_2:-76488248 Msa0788850:CDS
AAAATACTAGAATTATACTT+TGG 0.461888 5_2:+76492004 None:intergenic
TCTTTGGCTCATGGTGCTGT+AGG 0.468769 5_2:-76489488 Msa0788850:intron
CTTCTCTTCTCATCAGAAGT+TGG 0.471435 5_2:-76486862 Msa0788850:CDS
AAAGCATCTGAGGCCTGGAC+TGG 0.476348 5_2:-76487527 Msa0788850:CDS
ATGATAAAGCATCTGAGGCC+TGG 0.480277 5_2:-76487532 Msa0788850:CDS
GTTGTCATGTGTCATCCATC+GGG 0.480677 5_2:-76490904 Msa0788850:CDS
AGTTGTCATGTGTCATCCAT+CGG 0.482754 5_2:-76490905 Msa0788850:CDS
AGTTGCTCTCAAACTATGAT+TGG 0.487450 5_2:-76487862 Msa0788850:CDS
TCTGGGCTGCCGAACTCTGA+AGG 0.488416 5_2:+76485727 None:intergenic
ATACATACCAATGAAGTTCA+AGG 0.491806 5_2:+76491660 None:intergenic
ATGCCATAATTGGAATTTGG+TGG 0.493716 5_2:+76486233 None:intergenic
GTCTAGACTAGCAAAACGTT+GGG 0.494019 5_2:-76488287 Msa0788850:intron
GGAAAATATTGTAGTAGTTG+TGG 0.494405 5_2:-76489525 Msa0788850:CDS
CTGTAGGTGAAGTTGGAAAA+GGG 0.494994 5_2:-76485957 Msa0788850:CDS
GCTGTAGGTGAAGTTGGAAA+AGG 0.496760 5_2:-76485958 Msa0788850:CDS
CCGAACTCTGAAGGTGGGAG+AGG 0.497282 5_2:+76485736 None:intergenic
TATTTAAAGGAGTTCGCAAA+AGG 0.498991 5_2:+76486938 None:intergenic
GTTCTCTCTTTACAGCTGGA+AGG 0.500279 5_2:-76488878 Msa0788850:intron
CGGTATGCTAAAGATATCCT+TGG 0.500426 5_2:+76492180 None:intergenic
AGGACAGAATGCAACTTAAA+GGG 0.502070 5_2:-76490936 Msa0788850:CDS
ACAAATTAGTAGGTCAATGA+AGG 0.503786 5_2:-76491704 Msa0788850:CDS
AGGAAATTGGTCCATACAGA+TGG 0.506007 5_2:-76487070 Msa0788850:CDS
TTACAAAGGTAGACAAAAGA+AGG 0.507935 5_2:+76491302 None:intergenic
CGAAGGAAATATTACTAAAG+AGG 0.509950 5_2:-76491338 Msa0788850:CDS
CACAAATTGTATACCTTGGA+AGG 0.511785 5_2:+76486162 None:intergenic
TTTGTATGGATGATGAATGC+TGG 0.512757 5_2:-76490247 Msa0788850:CDS
AAATACGGATCCGTTTGGAT+TGG 0.514368 5_2:-76485541 Msa0788850:three_prime_UTR
GGCTGCCGAACTCTGAAGGT+GGG 0.518199 5_2:+76485731 None:intergenic
AAACCCGGTGATCCGCGAGC+AGG 0.518854 5_2:+76488171 None:intergenic
TGTCTAGACTAGCAAAACGT+TGG 0.520908 5_2:-76488288 Msa0788850:intron
TGGATTATCACCTAGTGCAT+TGG 0.523083 5_2:-76487507 Msa0788850:intron
GAGAATTATTCCATCGGCCA+AGG 0.526428 5_2:-76492197 Msa0788850:five_prime_UTR
CAAGAGGAAGTGGTCGAGAA+AGG 0.526715 5_2:-76486006 Msa0788850:CDS
GATACGATTTCTCCCACGTC+AGG 0.528007 5_2:+76486184 None:intergenic
GGAGAGAATGAGCAAGCTGT+AGG 0.533273 5_2:-76487581 Msa0788850:CDS
TTATGGCATGATTCTTTAGG+AGG 0.535241 5_2:-76486219 Msa0788850:CDS
TGGTAGACTTTGATCCATCA+AGG 0.538711 5_2:-76486388 Msa0788850:CDS
GCGATGCCATCGGCCTGACG+TGG 0.540608 5_2:-76486197 Msa0788850:CDS
ATACTTTGGTGTAGCTTGAA+CGG 0.541725 5_2:+76492018 None:intergenic
ATACATCATTCACGCTCCAC+TGG 0.543736 5_2:+76490132 None:intergenic
TCTTTAGGAGGCGATGCCAT+CGG 0.547798 5_2:-76486207 Msa0788850:CDS
ATAAGCAACCAAAAGCTCAA+TGG 0.551656 5_2:+76488225 None:intergenic
AGTTTGTCCTAACACAAATA+CGG 0.553325 5_2:-76485556 Msa0788850:three_prime_UTR
GGTAAATTACCAGAGTCTAA+AGG 0.553990 5_2:+76489279 None:intergenic
AAATTTCCAGAGTGTGCTAT+CGG 0.555755 5_2:+76489378 None:intergenic
TGCTTTGACACTTAAATGCA+TGG 0.556334 5_2:-76490725 Msa0788850:CDS
ACAATTGATTGTAGTATGAT+CGG 0.557594 5_2:-76485805 Msa0788850:three_prime_UTR
TCGACTCCATGTCTCTGAAG+TGG 0.557728 5_2:+76491384 None:intergenic
GGGCTGCCGAACTCTGAAGG+TGG 0.558991 5_2:+76485730 None:intergenic
GTACACTAGACACCTTCAAA+GGG 0.559345 5_2:+76489304 None:intergenic
TAGCCGAGCATGTGCTTAGT+CGG 0.562064 5_2:-76489565 Msa0788850:CDS
CATTTAATGCTCCCTGCTCG+CGG 0.563307 5_2:-76488183 Msa0788850:CDS
TTTGGAGAAAGCATTTAGGA+TGG 0.563350 5_2:-76489964 Msa0788850:CDS
AACCCGGTGATCCGCGAGCA+GGG 0.564009 5_2:+76488172 None:intergenic
GAAGCGGAAACAAGAGGAAG+TGG 0.565503 5_2:-76486016 Msa0788850:CDS
TTGCAGCCACTTCAGAGACA+TGG 0.566145 5_2:-76491390 Msa0788850:intron
AGTAGAATTGCAGAAAGCAC+AGG 0.566781 5_2:-76489752 Msa0788850:intron
GAGAGAATGAGCAAGCTGTA+GGG 0.567509 5_2:-76487580 Msa0788850:CDS
AATGACTTGAGCCCGAGTGA+TGG 0.568788 5_2:-76487809 Msa0788850:CDS
TAATTTGTTGCCTAGAAGCA+AGG 0.570477 5_2:+76491719 None:intergenic
TGTACACTAGACACCTTCAA+AGG 0.570796 5_2:+76489303 None:intergenic
AGTGTACAGCCTTTAGACTC+TGG 0.571017 5_2:-76489288 Msa0788850:intron
GATGTGGATGTGCTAATGTC+AGG 0.572289 5_2:-76488652 Msa0788850:CDS
CACTGCAACTGAGGATGATG+TGG 0.572895 5_2:-76488668 Msa0788850:CDS
GACTGAAATTCCTATGAACA+AGG 0.573630 5_2:+76489992 None:intergenic
TTTGCAAAAGCCAATCCAAA+CGG 0.574872 5_2:+76485531 None:intergenic
TCTAGTGGTTGAATGCATGA+TGG 0.575502 5_2:+76488984 None:intergenic
ATCTCTCAGACTGAATATGT+TGG 0.576603 5_2:-76489009 Msa0788850:CDS
ATGGCAGTCTTCAAAAGAAG+TGG 0.576725 5_2:-76488702 Msa0788850:intron
ACAGGAACACAAGTTGCTAA+AGG 0.577130 5_2:-76486494 Msa0788850:intron
ACATTCTTTGAGTAAACTAA+GGG 0.577577 5_2:+76488594 None:intergenic
ACCTGAATCATAATTTCTAG+TGG 0.579487 5_2:+76488969 None:intergenic
TGGCAGTCTTCAAAAGAAGT+GGG 0.580039 5_2:-76488701 Msa0788850:intron
GCTAGAAGATGAGGTTCAGG+AGG 0.581102 5_2:+76489047 None:intergenic
AGCAAGGTGTGCCAGTATGA+CGG 0.581622 5_2:+76491735 None:intergenic
CGGAAGGTGCTAAAAGCTGT+AGG 0.581947 5_2:-76485973 Msa0788850:CDS
TTCTCATCAGAAGTTGGTCA+TGG 0.582565 5_2:-76486856 Msa0788850:intron
TTTGGAAGACATGTATATGG+AGG 0.585148 5_2:-76491984 Msa0788850:CDS
GATGACATGCACTGCAACTG+AGG 0.585163 5_2:-76488677 Msa0788850:CDS
GGTCTCTACTTTCCAAAGGA+AGG 0.587102 5_2:-76491361 Msa0788850:CDS
TGATTGTAGTATGATCGGTC+CGG 0.588529 5_2:-76485800 Msa0788850:three_prime_UTR
ATGGAGAAGTGTAGAGGTGG+TGG 0.588673 5_2:-76490706 Msa0788850:CDS
CATAGTTTGAGAGCAACTGC+AGG 0.592540 5_2:+76487867 None:intergenic
TTCAAAGAAGCGGAAACAAG+AGG 0.592916 5_2:-76486022 Msa0788850:intron
ACTGTAGCCAAGAACATCAC+TGG 0.595004 5_2:+76487557 None:intergenic
TGCCTAAAGATTTGAAGGGT+AGG 0.596613 5_2:-76486439 Msa0788850:CDS
TACTTTCCAAAGGAAGGCGA+AGG 0.597554 5_2:-76491355 Msa0788850:CDS
GAATGCTGAAAGTAAAGAAG+AGG 0.598397 5_2:-76489928 Msa0788850:intron
TTACGCGTCATGTTTAACTT+CGG 0.598990 5_2:+76492160 None:intergenic
CAAGTTGCTAAAGGACATGC+TGG 0.599455 5_2:-76486485 Msa0788850:CDS
ACTAGGTGATAATCCAGTCC+AGG 0.600816 5_2:+76487514 None:intergenic
CAGGGAGCATTAAATGGCAA+AGG 0.602397 5_2:+76488190 None:intergenic
TGGATGGAAGCAACTAAGAG+AGG 0.602931 5_2:-76491933 Msa0788850:CDS
CTAAAGATATCCTTGGCCGA+TGG 0.603987 5_2:+76492187 None:intergenic
AGTTTATGATAAAGCATCTG+AGG 0.608023 5_2:-76487537 Msa0788850:CDS
ATGCCGACTAAGCACATGCT+CGG 0.610610 5_2:+76489562 None:intergenic
GGAGAAATCGTATCCTTCCA+AGG 0.611605 5_2:-76486175 Msa0788850:intron
GGAAATTGGTCCATACAGAT+GGG 0.612106 5_2:-76487069 Msa0788850:CDS
TTATTTATGTCAACAACCAA+AGG 0.612446 5_2:+76487830 None:intergenic
CTTTACAGCTGGAAGGTTCG+GGG 0.614274 5_2:-76488871 Msa0788850:intron
ACAAGGAGCTATATGCATCA+GGG 0.615593 5_2:-76490271 Msa0788850:CDS
TAATTGATAAAATTGACTAG+AGG 0.620235 5_2:+76485856 None:intergenic
TTTCTCCCACGTCAGGCCGA+TGG 0.623755 5_2:+76486191 None:intergenic
GATGAAACTCACATTTCAGG+AGG 0.625753 5_2:-76487090 Msa0788850:CDS
TCGAGGTCTCTACTTTCCAA+AGG 0.627437 5_2:-76491365 Msa0788850:CDS
GGCAGTCTTCAAAAGAAGTG+GGG 0.630770 5_2:-76488700 Msa0788850:intron
TCGGCATCTATCTCTATCCA+AGG 0.632177 5_2:-76489546 Msa0788850:CDS
GGAGAAATGCACAATGCCAG+TGG 0.633444 5_2:-76490148 Msa0788850:CDS
ACAGATCCGATAGCACACTC+TGG 0.634529 5_2:-76489384 Msa0788850:intron
GATATGCAAGTTTGTCCTTG+TGG 0.635292 5_2:+76486893 None:intergenic
TTGTCATGTGTCATCCATCG+GGG 0.636476 5_2:-76490903 Msa0788850:CDS
TTTGAAGGGTAGGCGGCCAG+AGG 0.639215 5_2:-76486429 Msa0788850:CDS
AATAAACTTTAAGGGAAACA+AGG 0.639781 5_2:-76490288 Msa0788850:CDS
CGATGCCATCGGCCTGACGT+GGG 0.641131 5_2:-76486196 Msa0788850:CDS
GAAAGGATACGACCCTCGGA+AGG 0.641337 5_2:-76485989 Msa0788850:CDS
GAATAACTAACCAATGCACT+AGG 0.644523 5_2:+76487497 None:intergenic
TATACTTTCTCAAGCCACCA+AGG 0.646983 5_2:-76485921 Msa0788850:CDS
GCAGTCTTCAAAAGAAGTGG+GGG 0.647101 5_2:-76488699 Msa0788850:intron
GATGAGAAGAGAAGCCTCTG+AGG 0.648387 5_2:+76486871 None:intergenic
AAATGCATGGAGAAGTGTAG+AGG 0.649090 5_2:-76490712 Msa0788850:CDS
CTAAAGATTTGAAGGGTAGG+CGG 0.651617 5_2:-76486436 Msa0788850:CDS
GGGAATGTCAGAAATGGGAA+AGG 0.651657 5_2:-76489607 Msa0788850:CDS
AGAAACACACCTCATAAACC+CGG 0.656425 5_2:+76488156 None:intergenic
CACTAGACACCTTCAAAGGG+AGG 0.656957 5_2:+76489307 None:intergenic
TGCAATCATTCTTCTCCACA+AGG 0.658037 5_2:-76486908 Msa0788850:CDS
GTATATTCAGCTTCAAGACG+AGG 0.658593 5_2:-76490749 Msa0788850:intron
TGCATGGAGAAGTGTAGAGG+TGG 0.668356 5_2:-76490709 Msa0788850:CDS
TCGAGAAAGGATACGACCCT+CGG 0.670581 5_2:-76485993 Msa0788850:CDS
TTGTTGCCTAAAGATTTGAA+GGG 0.674324 5_2:-76486443 Msa0788850:CDS
TGTCATGTGTCATCCATCGG+GGG 0.678227 5_2:-76490902 Msa0788850:CDS
ACTTCAGAGACATGGAGTCG+AGG 0.679494 5_2:-76491382 Msa0788850:CDS
CTAGAAGATGAGGTTCAGGA+GGG 0.689021 5_2:+76489048 None:intergenic
GTAAAGAAGCTGATGTAGTG+TGG 0.697050 5_2:-76485673 Msa0788850:three_prime_UTR
ACACTCTGGAAATTTGCTCG+AGG 0.697918 5_2:-76489370 Msa0788850:CDS
ACTGAAATTCCTATGAACAA+GGG 0.701369 5_2:+76489993 None:intergenic
AATTGGTCCATACAGATGGG+AGG 0.702380 5_2:-76487066 Msa0788850:intron
ACAAACTTGCATATCCTCAG+AGG 0.716900 5_2:-76486885 Msa0788850:CDS
TGAATGCTGGAGATTGTACG+AGG 0.795043 5_2:-76490234 Msa0788850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATATTTGAATTTCTTTT+AGG - chr5_2:76485872-76485891 Msa0788850:three_prime_UTR 10.0%
!! TAATAAGTAAAAAATTAATG+TGG - chr5_2:76485908-76485927 Msa0788850:exon 10.0%
!! TGAGATATATATTATAATAA+AGG + chr5_2:76486969-76486988 None:intergenic 10.0%
!! TGTTATATAATTATTTCATA+TGG - chr5_2:76490316-76490335 Msa0788850:intron 10.0%
!! AAAATTATACATTCATAAAA+TGG - chr5_2:76490972-76490991 Msa0788850:intron 10.0%
!! AAAATACTAGAATTATACTT+TGG + chr5_2:76485762-76485781 None:intergenic 15.0%
!!! AAAGTATAATTCTAGTATTT+TGG - chr5_2:76485761-76485780 Msa0788850:three_prime_UTR 15.0%
!! TAAAAGTTTCCATTTATATT+CGG - chr5_2:76486769-76486788 Msa0788850:intron 15.0%
!! TTAAATATGATTATTGTATG+AGG - chr5_2:76487118-76487137 Msa0788850:CDS 15.0%
!!! TTTTTTCTCTAAAATAGTAT+GGG - chr5_2:76488136-76488155 Msa0788850:intron 15.0%
!! TGTTAATGATATAAGTATAT+GGG + chr5_2:76488332-76488351 None:intergenic 15.0%
!! ACTTCAAAAATAATTTATTC+TGG + chr5_2:76488512-76488531 None:intergenic 15.0%
!!! ATGATTATTGATGATTTAAA+TGG - chr5_2:76489210-76489229 Msa0788850:intron 15.0%
!! AACATTCATAATTCAAAGAA+TGG - chr5_2:76485627-76485646 Msa0788850:three_prime_UTR 20.0%
!!! TTAATCAACGAATTTTTTCT+TGG - chr5_2:76485810-76485829 Msa0788850:three_prime_UTR 20.0%
!! AATAGATACATTATTGTGAT+TGG - chr5_2:76486348-76486367 Msa0788850:intron 20.0%
!! CATACAAAATAGAATTACAA+AGG + chr5_2:76486478-76486497 None:intergenic 20.0%
!! ATAAAGTATAAACAGAGATT+CGG + chr5_2:76486539-76486558 None:intergenic 20.0%
!!! ATTCGTTTTTAATTGATATG+TGG - chr5_2:76486592-76486611 Msa0788850:intron 20.0%
!!! AAACTTTTAAAGAAAACTCT+TGG + chr5_2:76486758-76486777 None:intergenic 20.0%
!! TCTTACAGAATAAACTTTAA+GGG - chr5_2:76487467-76487486 Msa0788850:intron 20.0%
!! CAAAATTTATTCGAGTAATA+TGG - chr5_2:76487594-76487613 Msa0788850:CDS 20.0%
!!! CTTTTTTCTCTAAAATAGTA+TGG - chr5_2:76488135-76488154 Msa0788850:intron 20.0%
!! GTTAATGATATAAGTATATG+GGG + chr5_2:76488331-76488350 None:intergenic 20.0%
!! CTGTTAATGATATAAGTATA+TGG + chr5_2:76488333-76488352 None:intergenic 20.0%
!! CAAAAATAATTTATTCTGGT+GGG + chr5_2:76488508-76488527 None:intergenic 20.0%
!! TCAAAAATAATTTATTCTGG+TGG + chr5_2:76488509-76488528 None:intergenic 20.0%
!! ATCAACACATATTGTTAATT+TGG + chr5_2:76488661-76488680 None:intergenic 20.0%
!! ATTTATAATCTGTAACTCAT+AGG - chr5_2:76489443-76489462 Msa0788850:intron 20.0%
!! AATAACCACAATTTCAAATA+AGG + chr5_2:76489831-76489850 None:intergenic 20.0%
!!! TACTTTCTTTTATATTGAAG+AGG + chr5_2:76490068-76490087 None:intergenic 20.0%
!! ATATAATTATTTCATATGGC+TGG - chr5_2:76490320-76490339 Msa0788850:intron 20.0%
!!! ATAATTCATTAGCCTTTTAA+AGG + chr5_2:76490787-76490806 None:intergenic 20.0%
!! ATTGCATCATAGTTATTTAA+AGG + chr5_2:76490841-76490860 None:intergenic 20.0%
!! TAATTGATAAAATTGACTAG+AGG + chr5_2:76491910-76491929 None:intergenic 20.0%
!! CTTTACAATATATAAGAATC+TGG + chr5_2:76492076-76492095 None:intergenic 20.0%
!! TTTTGTGAGAATTATTCCAT+CGG - chr5_2:76485560-76485579 Msa0788850:three_prime_UTR 25.0%
!!! TATTTTGGAAGACATGTATA+TGG - chr5_2:76485776-76485795 Msa0788850:three_prime_UTR 25.0%
! AATTCACTAAGAAACTACAA+TGG + chr5_2:76486255-76486274 None:intergenic 25.0%
! TAGTTTCTTAGTGAATTTGT+AGG - chr5_2:76486258-76486277 Msa0788850:intron 25.0%
!!! TTTGCTACTGACTTAAAAAT+TGG - chr5_2:76486284-76486303 Msa0788850:intron 25.0%
! TAAAGAAAACTCTTGGTAAA+TGG + chr5_2:76486751-76486770 None:intergenic 25.0%
! TAAAGGAGAATAAAAGACAA+AGG + chr5_2:76486952-76486971 None:intergenic 25.0%
!! TTTGACATTGATAATCCATT+TGG - chr5_2:76487165-76487184 Msa0788850:intron 25.0%
!! TTGACATTGATAATCCATTT+GGG - chr5_2:76487166-76487185 Msa0788850:intron 25.0%
! TTATAATGATGTAAGCAAAC+AGG - chr5_2:76487249-76487268 Msa0788850:intron 25.0%
! CTCTTACAGAATAAACTTTA+AGG - chr5_2:76487466-76487485 Msa0788850:intron 25.0%
!! AATAAACTTTAAGGGAAACA+AGG - chr5_2:76487475-76487494 Msa0788850:intron 25.0%
!!! ATACATGCTATTTTAGCTAA+AGG - chr5_2:76487557-76487576 Msa0788850:CDS 25.0%
! TGATTGAATTTACAACTTCA+GGG - chr5_2:76487725-76487744 Msa0788850:intron 25.0%
!! AACTACTACAATATTTTCCT+TGG + chr5_2:76488237-76488256 None:intergenic 25.0%
! TAAGTATATGGGGTAAAAAA+AGG + chr5_2:76488321-76488340 None:intergenic 25.0%
!! CTTTTTGCCAAAGAAAAAAA+AGG - chr5_2:76488580-76488599 Msa0788850:intron 25.0%
!! CTTCTAGCTAATGAAAAAAT+TGG - chr5_2:76488731-76488750 Msa0788850:intron 25.0%
!! TTAGTAAATTTTCTCTGCAT+AGG + chr5_2:76488855-76488874 None:intergenic 25.0%
! TCTAGTTACCTTATTCAAAT+AGG - chr5_2:76488954-76488973 Msa0788850:intron 25.0%
! ACCTTATTCAAATAGGAAAA+AGG - chr5_2:76488961-76488980 Msa0788850:intron 25.0%
!! ACCTTTTTCCTATTTGAATA+AGG + chr5_2:76488965-76488984 None:intergenic 25.0%
! TTATTCAAATAGGAAAAAGG+TGG - chr5_2:76488964-76488983 Msa0788850:intron 25.0%
! TATTCAAATAGGAAAAAGGT+GGG - chr5_2:76488965-76488984 Msa0788850:intron 25.0%
! CAAGATATTGAAGCAAATAA+AGG + chr5_2:76489000-76489019 None:intergenic 25.0%
! ATGACATGATTCTGTTATTA+TGG - chr5_2:76489042-76489061 Msa0788850:CDS 25.0%
!! TCTTAAAATTTTGCATGAGA+GGG - chr5_2:76489146-76489165 Msa0788850:intron 25.0%
! ACATTCTTTGAGTAAACTAA+GGG + chr5_2:76489172-76489191 None:intergenic 25.0%
! TACATTCTTTGAGTAAACTA+AGG + chr5_2:76489173-76489192 None:intergenic 25.0%
! TAGTTTACTCAAAGAATGTA+TGG - chr5_2:76489173-76489192 Msa0788850:intron 25.0%
! TGATAAGTGAAACTCAAAAA+TGG + chr5_2:76489241-76489260 None:intergenic 25.0%
!! AAACCTTTTTAATATGCAGT+TGG - chr5_2:76489260-76489279 Msa0788850:intron 25.0%
!! AACCTTTTTAATATGCAGTT+GGG - chr5_2:76489261-76489280 Msa0788850:intron 25.0%
! TTGGGAATGATAAAAAAACA+CGG - chr5_2:76489279-76489298 Msa0788850:intron 25.0%
! TAACTATTGGTCCATATATT+GGG + chr5_2:76489379-76489398 None:intergenic 25.0%
!! TCATTTACTTAGCAGATTTT+GGG - chr5_2:76489643-76489662 Msa0788850:intron 25.0%
!!! AACACTTTTATTTCATTGAC+AGG - chr5_2:76489871-76489890 Msa0788850:intron 25.0%
! TTATTTATGTCAACAACCAA+AGG + chr5_2:76489936-76489955 None:intergenic 25.0%
!!! TTTATTTCTTTTCCATCACT+CGG + chr5_2:76489969-76489988 None:intergenic 25.0%
!!! TGTTTGTAGTCTGTTATTTT+TGG - chr5_2:76490036-76490055 Msa0788850:intron 25.0%
!!! GTTTGTAGTCTGTTATTTTT+GGG - chr5_2:76490037-76490056 Msa0788850:intron 25.0%
!!! TTTGTAGTCTGTTATTTTTG+GGG - chr5_2:76490038-76490057 Msa0788850:intron 25.0%
! TTTGCTAAAAAGAAAAAGTC+AGG - chr5_2:76490160-76490179 Msa0788850:CDS 25.0%
! TTGCTAAAAAGAAAAAGTCA+GGG - chr5_2:76490161-76490180 Msa0788850:CDS 25.0%
! GTTAGTTATTCTCTCTAAAT+TGG - chr5_2:76490278-76490297 Msa0788850:CDS 25.0%
! TACATTACAATTAACAGAGA+GGG + chr5_2:76490363-76490382 None:intergenic 25.0%
! TTACATTACAATTAACAGAG+AGG + chr5_2:76490364-76490383 None:intergenic 25.0%
! AATTAATAGTCACAACAGTT+CGG - chr5_2:76490477-76490496 Msa0788850:intron 25.0%
! TGTTGTAATGAATCATTAAC+AGG - chr5_2:76490604-76490623 Msa0788850:intron 25.0%
! ATCATTAACAGGAACTTAAA+AGG - chr5_2:76490615-76490634 Msa0788850:intron 25.0%
!! AGAGTTTGATTTCCTTTAAA+AGG - chr5_2:76490772-76490791 Msa0788850:intron 25.0%
! TACATTCATAAAATGGTTCA+AGG - chr5_2:76490979-76490998 Msa0788850:intron 25.0%
! ACATTCATAAAATGGTTCAA+GGG - chr5_2:76490980-76490999 Msa0788850:intron 25.0%
! AATGATAATCATTTGTAGCA+AGG - chr5_2:76491049-76491068 Msa0788850:intron 25.0%
! TAATCAAATGATATTCTCGT+TGG - chr5_2:76491239-76491258 Msa0788850:intron 25.0%
! AAATCTTTAGGCAACAAAAA+GGG + chr5_2:76491317-76491336 None:intergenic 25.0%
!!! AACTTATTTTTAAGTTCCTC+TGG + chr5_2:76491353-76491372 None:intergenic 25.0%
! TAGAGGTAAGTACAATTAAA+AGG - chr5_2:76491414-76491433 Msa0788850:intron 25.0%
! TGATATCAAGATTAGTAAAG+AGG + chr5_2:76491483-76491502 None:intergenic 25.0%
! AATTCTTAAATCCATGCAAA+TGG - chr5_2:76491689-76491708 Msa0788850:CDS 25.0%
!!! TTCTTTCTTTTTCAAAGAAG+CGG - chr5_2:76491731-76491750 Msa0788850:CDS 25.0%
! ACAATTGATTGTAGTATGAT+CGG - chr5_2:76491958-76491977 Msa0788850:CDS 25.0%
ATTGACTGTTAATGTTCAGA+AGG - chr5_2:76485717-76485736 Msa0788850:three_prime_UTR 30.0%
!!! TCAACGAATTTTTTCTTGGA+TGG - chr5_2:76485814-76485833 Msa0788850:three_prime_UTR 30.0%
! AGAGGCTTTAATTCTACTTA+AGG - chr5_2:76485848-76485867 Msa0788850:three_prime_UTR 30.0%
ACAAATTAGTAGGTCAATGA+AGG - chr5_2:76486059-76486078 Msa0788850:intron 30.0%
ATACATACCAATGAAGTTCA+AGG + chr5_2:76486106-76486125 None:intergenic 30.0%
GAATCGAGAATACCAAAATA+TGG + chr5_2:76486196-76486215 None:intergenic 30.0%
! AAATTGGCTTAGATTGAAAG+TGG - chr5_2:76486300-76486319 Msa0788850:intron 30.0%
! AATTGGCTTAGATTGAAAGT+GGG - chr5_2:76486301-76486320 Msa0788850:intron 30.0%
CGAAGGAAATATTACTAAAG+AGG - chr5_2:76486425-76486444 Msa0788850:CDS 30.0%
TTACAAAGGTAGACAAAAGA+AGG + chr5_2:76486464-76486483 None:intergenic 30.0%
TATCACCTTTAACTCTTCAT+TGG - chr5_2:76486652-76486671 Msa0788850:intron 30.0%
TGAATAGCTCCGAATATAAA+TGG + chr5_2:76486781-76486800 None:intergenic 30.0%
! GGTTTTTCTCAGGTATTTTT+TGG - chr5_2:76486916-76486935 Msa0788850:CDS 30.0%
TTTAACAGCATAGTCAATCT+TGG + chr5_2:76487103-76487122 None:intergenic 30.0%
! TGACATTGATAATCCATTTG+GGG - chr5_2:76487167-76487186 Msa0788850:intron 30.0%
GTATTTGATTGGAAAGGTTT+AGG - chr5_2:76487189-76487208 Msa0788850:intron 30.0%
ATACAGCATCTGAATCAATA+TGG + chr5_2:76487363-76487382 None:intergenic 30.0%
!! CAGTTGATTCATTTTCATGA+TGG - chr5_2:76487399-76487418 Msa0788850:intron 30.0%
AAATTCAATCAGAGACAGAA+CGG + chr5_2:76487716-76487735 None:intergenic 30.0%
CTGATTGAATTTACAACTTC+AGG - chr5_2:76487724-76487743 Msa0788850:intron 30.0%
ACTGAAATTCCTATGAACAA+GGG + chr5_2:76487773-76487792 None:intergenic 30.0%
TCTTCTTTACTTTCAGCATT+CGG + chr5_2:76487836-76487855 None:intergenic 30.0%
! TCTTGAATTTCGGAAGTTTT+GGG - chr5_2:76487956-76487975 Msa0788850:intron 30.0%
GTCTTTAAATCTTCTAAGCT+CGG + chr5_2:76487991-76488010 None:intergenic 30.0%
CCATGTTAGACATATTATCT+TGG + chr5_2:76488110-76488129 None:intergenic 30.0%
CCAAGATAATATGTCTAACA+TGG - chr5_2:76488107-76488126 Msa0788850:intron 30.0%
GGAAAATATTGTAGTAGTTG+TGG - chr5_2:76488238-76488257 Msa0788850:CDS 30.0%
! TGGCAAAAAGTTTTCAGTTT+TGG + chr5_2:76488570-76488589 None:intergenic 30.0%
!!! TGTACTGCCTTTTTTTTCTT+TGG + chr5_2:76488590-76488609 None:intergenic 30.0%
! TTTTCATTAGCTAGAAGATG+AGG + chr5_2:76488728-76488747 None:intergenic 30.0%
ACCACTAGAAATTATGATTC+AGG - chr5_2:76488793-76488812 Msa0788850:intron 30.0%
! ACCTGAATCATAATTTCTAG+TGG + chr5_2:76488797-76488816 None:intergenic 30.0%
TCAATTGCAATTTCATCCAT+TGG + chr5_2:76488924-76488943 None:intergenic 30.0%
! GTCTTAAAATTTTGCATGAG+AGG - chr5_2:76489145-76489164 Msa0788850:intron 30.0%
TTCCCAACTGCATATTAAAA+AGG + chr5_2:76489266-76489285 None:intergenic 30.0%
TGGGAATGATAAAAAAACAC+GGG - chr5_2:76489280-76489299 Msa0788850:intron 30.0%
CTAACTATTGGTCCATATAT+TGG + chr5_2:76489380-76489399 None:intergenic 30.0%
CAATATATGGACCAATAGTT+AGG - chr5_2:76489378-76489397 Msa0788850:CDS 30.0%
! CTCATTTACTTAGCAGATTT+TGG - chr5_2:76489642-76489661 Msa0788850:intron 30.0%
! TTTAAACCTGATTTTCTCGT+GGG - chr5_2:76489692-76489711 Msa0788850:intron 30.0%
! AGCATCCTTATTTGAAATTG+TGG - chr5_2:76489823-76489842 Msa0788850:intron 30.0%
!! TTATTTCTTTTCCATCACTC+GGG + chr5_2:76489968-76489987 None:intergenic 30.0%
AAGTAAAATCTTGTTACTGC+TGG - chr5_2:76490083-76490102 Msa0788850:intron 30.0%
! AGTTTATGATAAAGCATCTG+AGG - chr5_2:76490226-76490245 Msa0788850:CDS 30.0%
TAATTATTTCATATGGCTGG+AGG - chr5_2:76490323-76490342 Msa0788850:intron 30.0%
TTGTTCAGTCACTAAATTCT+AGG - chr5_2:76490399-76490418 Msa0788850:intron 30.0%
ATTAATAGTCACAACAGTTC+GGG - chr5_2:76490478-76490497 Msa0788850:intron 30.0%
GTATTGAAATGTTGACATCA+AGG + chr5_2:76490537-76490556 None:intergenic 30.0%
TATTTAAAGGAGTTCGCAAA+AGG + chr5_2:76490828-76490847 None:intergenic 30.0%
ATAGCATAGTTCTTAATAGC+TGG - chr5_2:76490941-76490960 Msa0788850:intron 30.0%
GTGTGCATGATAAAATATTC+TGG - chr5_2:76491107-76491126 Msa0788850:intron 30.0%
! TTTTCGAAACGTATAAGACA+AGG - chr5_2:76491131-76491150 Msa0788850:intron 30.0%
CAATGAAGATGATAACATGA+GGG + chr5_2:76491206-76491225 None:intergenic 30.0%
TCAATGAAGATGATAACATG+AGG + chr5_2:76491207-76491226 None:intergenic 30.0%
CAAATCTTTAGGCAACAAAA+AGG + chr5_2:76491318-76491337 None:intergenic 30.0%
TTTGTTGCCTAAAGATTTGA+AGG - chr5_2:76491319-76491338 Msa0788850:CDS 30.0%
TTGTTGCCTAAAGATTTGAA+GGG - chr5_2:76491320-76491339 Msa0788850:CDS 30.0%
GGAACTTAAAAATAAGTTGC+TGG - chr5_2:76491355-76491374 Msa0788850:CDS 30.0%
GTGCTTTATCAAAGATTTAG+AGG - chr5_2:76491397-76491416 Msa0788850:intron 30.0%
ATACTCGTATTGTTTCCATT+TGG - chr5_2:76491451-76491470 Msa0788850:intron 30.0%
TTTCCACCAAATTCCAATTA+TGG - chr5_2:76491527-76491546 Msa0788850:intron 30.0%
ATCATGCCATAATTGGAATT+TGG + chr5_2:76491536-76491555 None:intergenic 30.0%
CTAAAGAATCATGCCATAAT+TGG + chr5_2:76491543-76491562 None:intergenic 30.0%
CAATTATGGCATGATTCTTT+AGG - chr5_2:76491541-76491560 Msa0788850:intron 30.0%
TATGCACAAATTGTATACCT+TGG + chr5_2:76491608-76491627 None:intergenic 30.0%
!!! TGGAACTCTTCATTTTTTCT+GGG + chr5_2:76492056-76492075 None:intergenic 30.0%
AGTTTGTCCTAACACAAATA+CGG - chr5_2:76492207-76492226 Msa0788850:five_prime_UTR 30.0%
! TTACGCGTCATGTTTAACTT+CGG + chr5_2:76485606-76485625 None:intergenic 35.0%
GAAACTGAATGTAGATGCAA+AGG + chr5_2:76485659-76485678 None:intergenic 35.0%
! ATACTTTGGTGTAGCTTGAA+CGG + chr5_2:76485748-76485767 None:intergenic 35.0%
TTTGGAAGACATGTATATGG+AGG - chr5_2:76485779-76485798 Msa0788850:three_prime_UTR 35.0%
ATACCTAAAATTCGGAAGAG+CGG + chr5_2:76485951-76485970 None:intergenic 35.0%
!! CTCTTCCGAATTTTAGGTAT+GGG - chr5_2:76485951-76485970 Msa0788850:CDS 35.0%
TATGTTCATGATTGCCTGAA+TGG - chr5_2:76485994-76486013 Msa0788850:CDS 35.0%
!! ATTTTTGCTATCCGTCATAC+TGG - chr5_2:76486017-76486036 Msa0788850:CDS 35.0%
!! TAATTTGTTGCCTAGAAGCA+AGG + chr5_2:76486047-76486066 None:intergenic 35.0%
CTTCTAGGCAACAAATTAGT+AGG - chr5_2:76486049-76486068 Msa0788850:intron 35.0%
! TATACTCTCCTTTGCAGTTT+TGG - chr5_2:76486127-76486146 Msa0788850:intron 35.0%
AAAATGAGCCAAAACTGCAA+AGG + chr5_2:76486138-76486157 None:intergenic 35.0%
! TTTAGTGCTTTGATGACCAT+AGG - chr5_2:76486159-76486178 Msa0788850:intron 35.0%
! TTAGTGCTTTGATGACCATA+GGG - chr5_2:76486160-76486179 Msa0788850:intron 35.0%
! ATTGGCTTAGATTGAAAGTG+GGG - chr5_2:76486302-76486321 Msa0788850:intron 35.0%
ACAAAAGAAGGTTAGAGATC+TGG + chr5_2:76486452-76486471 None:intergenic 35.0%
TAAACAGAGATTCGGATATC+AGG + chr5_2:76486531-76486550 None:intergenic 35.0%
ACTTGCCAATGAAGAGTTAA+AGG + chr5_2:76486660-76486679 None:intergenic 35.0%
AGGACAGAATGCAACTTAAA+GGG - chr5_2:76486827-76486846 Msa0788850:intron 35.0%
!!! ATTTGGCTTTTCGAATGTCT+AGG - chr5_2:76486890-76486909 Msa0788850:CDS 35.0%
AGGAGAATAAAAGACAAAGG+TGG + chr5_2:76486949-76486968 None:intergenic 35.0%
TGCTTTGACACTTAAATGCA+TGG - chr5_2:76487038-76487057 Msa0788850:intron 35.0%
! ATCCATTTGGGGTATTTGAT+TGG - chr5_2:76487178-76487197 Msa0788850:intron 35.0%
TTCCAATCAAATACCCCAAA+TGG + chr5_2:76487183-76487202 None:intergenic 35.0%
! TTTGGGGTATTTGATTGGAA+AGG - chr5_2:76487183-76487202 Msa0788850:intron 35.0%
ATGTAAGCAAACAGGTTTGT+AGG - chr5_2:76487257-76487276 Msa0788850:intron 35.0%
!! AGACTTGCATTTGCTTTTCT+TGG - chr5_2:76487328-76487347 Msa0788850:intron 35.0%
!! ATATGCATCAGGGTTTTGTA+TGG - chr5_2:76487502-76487521 Msa0788850:intron 35.0%
TTTGTATGGATGATGAATGC+TGG - chr5_2:76487516-76487535 Msa0788850:CDS 35.0%
GACTGAAATTCCTATGAACA+AGG + chr5_2:76487774-76487793 None:intergenic 35.0%
AGGAATTTCAGTCAGTGATT+TGG - chr5_2:76487781-76487800 Msa0788850:intron 35.0%
!! GTGATTTGGAGAAAGCATTT+AGG - chr5_2:76487795-76487814 Msa0788850:intron 35.0%
!! TTTGGAGAAAGCATTTAGGA+TGG - chr5_2:76487799-76487818 Msa0788850:CDS 35.0%
! GCATTTAGGATGGTTGATAT+TGG - chr5_2:76487809-76487828 Msa0788850:CDS 35.0%
GAATGCTGAAAGTAAAGAAG+AGG - chr5_2:76487835-76487854 Msa0788850:CDS 35.0%
GAAATAATGAGTAAGGACAG+TGG + chr5_2:76487928-76487947 None:intergenic 35.0%
CCTGCTTGAAATAATGAGTA+AGG + chr5_2:76487935-76487954 None:intergenic 35.0%
CCTTACTCATTATTTCAAGC+AGG - chr5_2:76487932-76487951 Msa0788850:intron 35.0%
! CTCTTGAATTTCGGAAGTTT+TGG - chr5_2:76487955-76487974 Msa0788850:intron 35.0%
! CTTGAATTTCGGAAGTTTTG+GGG - chr5_2:76487957-76487976 Msa0788850:intron 35.0%
TAGTATGGGAATGTCAGAAA+TGG - chr5_2:76488150-76488169 Msa0788850:intron 35.0%
AGTATGGGAATGTCAGAAAT+GGG - chr5_2:76488151-76488170 Msa0788850:intron 35.0%
GGATCAACTTGATTTCTCTT+TGG - chr5_2:76488259-76488278 Msa0788850:CDS 35.0%
GTATATGGGGTAAAAAAAGG+AGG + chr5_2:76488318-76488337 None:intergenic 35.0%
AAATTTCCAGAGTGTGCTAT+CGG + chr5_2:76488388-76488407 None:intergenic 35.0%
GGTAAATTACCAGAGTCTAA+AGG + chr5_2:76488487-76488506 None:intergenic 35.0%
! AAGTCTTTTGTGTCAATGCT+TGG - chr5_2:76488528-76488547 Msa0788850:intron 35.0%
! AGTCTTTTGTGTCAATGCTT+GGG - chr5_2:76488529-76488548 Msa0788850:intron 35.0%
GATTACCATTTACAGCATTC+AGG - chr5_2:76488678-76488697 Msa0788850:CDS 35.0%
GTAAACCTGAATGCTGTAAA+TGG + chr5_2:76488686-76488705 None:intergenic 35.0%
ATCTCTCAGACTGAATATGT+TGG - chr5_2:76488754-76488773 Msa0788850:intron 35.0%
ATTTGTTCTCTCTTTACAGC+TGG - chr5_2:76488881-76488900 Msa0788850:intron 35.0%
!! GACAAGAAACTTTTGATTCG+TGG - chr5_2:76489314-76489333 Msa0788850:CDS 35.0%
CAACATGCTAGCATGATTAA+TGG - chr5_2:76489338-76489357 Msa0788850:CDS 35.0%
CAAAGTCGTTACCCAATATA+TGG - chr5_2:76489365-76489384 Msa0788850:CDS 35.0%
TTAAACGCTCACCTAACTAT+TGG + chr5_2:76489392-76489411 None:intergenic 35.0%
ATAAGCAACCAAAAGCTCAA+TGG + chr5_2:76489541-76489560 None:intergenic 35.0%
! CTTTAAACCTGATTTTCTCG+TGG - chr5_2:76489691-76489710 Msa0788850:intron 35.0%
TGTCTCAAATCTCATTACCA+CGG - chr5_2:76489717-76489736 Msa0788850:intron 35.0%
AGTTGCTCTCAAACTATGAT+TGG - chr5_2:76489901-76489920 Msa0788850:intron 35.0%
TGATTGGACTTATTCTCCTT+TGG - chr5_2:76489917-76489936 Msa0788850:intron 35.0%
! TGTTCTTGATGATATCTGTG+TGG - chr5_2:76490121-76490140 Msa0788850:intron 35.0%
! TGATATCTGTGTGGATTTTC+AGG - chr5_2:76490130-76490149 Msa0788850:intron 35.0%
GAATAACTAACCAATGCACT+AGG + chr5_2:76490269-76490288 None:intergenic 35.0%
!! GTGCATGCTAATTGATAATG+AGG - chr5_2:76490572-76490591 Msa0788850:intron 35.0%
! GTTGATGAAACTCACATTTC+AGG - chr5_2:76490670-76490689 Msa0788850:CDS 35.0%
ATAAAATGGTTCAAGGGTGA+GGG - chr5_2:76490986-76491005 Msa0788850:intron 35.0%
AGGCAGTGTACAATTTCATT+AGG - chr5_2:76491069-76491088 Msa0788850:intron 35.0%
ACAATTTCATTAGGCATAGC+AGG - chr5_2:76491078-76491097 Msa0788850:intron 35.0%
GTATAAGACAAGGATGACAT+TGG - chr5_2:76491141-76491160 Msa0788850:intron 35.0%
AAGATGATAACATGAGGGAA+AGG + chr5_2:76491201-76491220 None:intergenic 35.0%
ATTCTCGTTGGAAATGTAAC+AGG - chr5_2:76491251-76491270 Msa0788850:intron 35.0%
! TCTTTGATAAAGCACCTTGA+TGG + chr5_2:76491392-76491411 None:intergenic 35.0%
ATGCCATAATTGGAATTTGG+TGG + chr5_2:76491533-76491552 None:intergenic 35.0%
TTATGGCATGATTCTTTAGG+AGG - chr5_2:76491544-76491563 Msa0788850:intron 35.0%
CACAAATTGTATACCTTGGA+AGG + chr5_2:76491604-76491623 None:intergenic 35.0%
!!! CTGGAACTCTTCATTTTTTC+TGG + chr5_2:76492057-76492076 None:intergenic 35.0%
!! GAGTTTTTCAGACTCTAACA+GGG - chr5_2:76492132-76492151 Msa0788850:intron 35.0%
!! AGTTTTTCAGACTCTAACAG+GGG - chr5_2:76492133-76492152 Msa0788850:intron 35.0%
TTTGCAAAAGCCAATCCAAA+CGG + chr5_2:76492235-76492254 None:intergenic 35.0%
!! GCAAAGCTTGTTGATGTTGA+TGG - chr5_2:76485534-76485553 Msa0788850:three_prime_UTR 40.0%
CGGTATGCTAAAGATATCCT+TGG + chr5_2:76485586-76485605 None:intergenic 40.0%
!! GCTCTTCCGAATTTTAGGTA+TGG - chr5_2:76485950-76485969 Msa0788850:CDS 40.0%
TCGAGCCCATACCTAAAATT+CGG + chr5_2:76485959-76485978 None:intergenic 40.0%
CGGATAGCAAAAATCCATTC+AGG + chr5_2:76486011-76486030 None:intergenic 40.0%
CGCATTACCTTGAACTTCAT+TGG - chr5_2:76486096-76486115 Msa0788850:intron 40.0%
TTGGCTTAGATTGAAAGTGG+GGG - chr5_2:76486303-76486322 Msa0788850:intron 40.0%
ATATTTCCTTCGCCTTCCTT+TGG + chr5_2:76486417-76486436 None:intergenic 40.0%
TGTTCATGATTCCCATTTGC+AGG - chr5_2:76486807-76486826 Msa0788850:intron 40.0%
TTGCATTCTGTCCTGCAAAT+GGG + chr5_2:76486821-76486840 None:intergenic 40.0%
CAGGACAGAATGCAACTTAA+AGG - chr5_2:76486826-76486845 Msa0788850:intron 40.0%
AGTTGTCATGTGTCATCCAT+CGG - chr5_2:76486858-76486877 Msa0788850:CDS 40.0%
!! GCTTTTCGAATGTCTAGGAT+TGG - chr5_2:76486895-76486914 Msa0788850:CDS 40.0%
!!! GTCTAGGATTGGTTTTTCTC+AGG - chr5_2:76486906-76486925 Msa0788850:CDS 40.0%
TAAAAGACAAAGGTGGTTGC+TGG + chr5_2:76486942-76486961 None:intergenic 40.0%
GTATATTCAGCTTCAAGACG+AGG - chr5_2:76487014-76487033 Msa0788850:intron 40.0%
! AAATGCATGGAGAAGTGTAG+AGG - chr5_2:76487051-76487070 Msa0788850:intron 40.0%
TGTGTTGCACGATAACATTC+AGG - chr5_2:76487305-76487324 Msa0788850:intron 40.0%
TCAGATGCTGTATTACGTGA+TGG - chr5_2:76487370-76487389 Msa0788850:intron 40.0%
AACAAGGAGCTATATGCATC+AGG - chr5_2:76487491-76487510 Msa0788850:intron 40.0%
ACAAGGAGCTATATGCATCA+GGG - chr5_2:76487492-76487511 Msa0788850:intron 40.0%
ATCAGAGACAGAACGGAATA+AGG + chr5_2:76487709-76487728 None:intergenic 40.0%
GATAAAGAGCCCTTGTTCAT+AGG - chr5_2:76487761-76487780 Msa0788850:intron 40.0%
AAAGAGAAACAGAGTGAACG+TGG + chr5_2:76487874-76487893 None:intergenic 40.0%
TCAAGCAGGCTCTTGAATTT+CGG - chr5_2:76487946-76487965 Msa0788850:intron 40.0%
! AGTAGAATTGCAGAAAGCAC+AGG - chr5_2:76488011-76488030 Msa0788850:intron 40.0%
! CTTGATTTCTCTTTGGCTCA+TGG - chr5_2:76488266-76488285 Msa0788850:CDS 40.0%
AAAAAGGAGGCTAGGTAAGA+TGG + chr5_2:76488305-76488324 None:intergenic 40.0%
! AAGCGTTTGCGTCTTATTGA+AGG - chr5_2:76488433-76488452 Msa0788850:CDS 40.0%
GTACACTAGACACCTTCAAA+GGG + chr5_2:76488462-76488481 None:intergenic 40.0%
TGTACACTAGACACCTTCAA+AGG + chr5_2:76488463-76488482 None:intergenic 40.0%
! GTCTTTTGTGTCAATGCTTG+GGG - chr5_2:76488530-76488549 Msa0788850:intron 40.0%
TTAGCTAGAAGATGAGGTTC+AGG + chr5_2:76488722-76488741 None:intergenic 40.0%
TCTAGTGGTTGAATGCATGA+TGG + chr5_2:76488782-76488801 None:intergenic 40.0%
GTCAATTCATTGAGCACAAC+TGG + chr5_2:76488833-76488852 None:intergenic 40.0%
ATGGCAGTCTTCAAAAGAAG+TGG - chr5_2:76489061-76489080 Msa0788850:CDS 40.0%
TGGCAGTCTTCAAAAGAAGT+GGG - chr5_2:76489062-76489081 Msa0788850:CDS 40.0%
TGTCTAGACTAGCAAAACGT+TGG - chr5_2:76489475-76489494 Msa0788850:intron 40.0%
GTCTAGACTAGCAAAACGTT+GGG - chr5_2:76489476-76489495 Msa0788850:intron 40.0%
AGAAACACACCTCATAAACC+CGG + chr5_2:76489610-76489629 None:intergenic 40.0%
ATTGTGAAACCCCTTACCAA+GGG + chr5_2:76489757-76489776 None:intergenic 40.0%
AATTGTGAAACCCCTTACCA+AGG + chr5_2:76489758-76489777 None:intergenic 40.0%
TTGGTAAGGGGTTTCACAAT+TGG - chr5_2:76489757-76489776 Msa0788850:CDS 40.0%
TGGTAAGGGGTTTCACAATT+GGG - chr5_2:76489758-76489777 Msa0788850:CDS 40.0%
TTCACAATTGGGTGTGAAGT+TGG - chr5_2:76489769-76489788 Msa0788850:CDS 40.0%
TCACAATTGGGTGTGAAGTT+GGG - chr5_2:76489770-76489789 Msa0788850:CDS 40.0%
TTGGGACATACAATTACCCA+AGG - chr5_2:76489788-76489807 Msa0788850:CDS 40.0%
CAAATAAGGATGCTCAGTTC+TGG + chr5_2:76489817-76489836 None:intergenic 40.0%
!! TCTTGTTACTGCTGGTCTTT+AGG - chr5_2:76490091-76490110 Msa0788850:intron 40.0%
TGGATTATCACCTAGTGCAT+TGG - chr5_2:76490256-76490275 Msa0788850:CDS 40.0%
GATGAAACTCACATTTCAGG+AGG - chr5_2:76490673-76490692 Msa0788850:CDS 40.0%
CTCACATTTCAGGAGGAAAT+TGG - chr5_2:76490680-76490699 Msa0788850:CDS 40.0%
AGGAAATTGGTCCATACAGA+TGG - chr5_2:76490693-76490712 Msa0788850:CDS 40.0%
GGAAATTGGTCCATACAGAT+GGG - chr5_2:76490694-76490713 Msa0788850:CDS 40.0%
CAATTTACCTCCCATCTGTA+TGG + chr5_2:76490707-76490726 None:intergenic 40.0%
TGCAATCATTCTTCTCCACA+AGG - chr5_2:76490855-76490874 Msa0788850:intron 40.0%
GATATGCAAGTTTGTCCTTG+TGG + chr5_2:76490873-76490892 None:intergenic 40.0%
ACAAACTTGCATATCCTCAG+AGG - chr5_2:76490878-76490897 Msa0788850:CDS 40.0%
CTTCTCTTCTCATCAGAAGT+TGG - chr5_2:76490901-76490920 Msa0788850:CDS 40.0%
! TTCTCATCAGAAGTTGGTCA+TGG - chr5_2:76490907-76490926 Msa0788850:CDS 40.0%
! ATCAGAAGTTGGTCATGGTA+TGG - chr5_2:76490912-76490931 Msa0788850:CDS 40.0%
CATAAAATGGTTCAAGGGTG+AGG - chr5_2:76490985-76491004 Msa0788850:intron 40.0%
TAAAATGGTTCAAGGGTGAG+GGG - chr5_2:76490987-76491006 Msa0788850:intron 40.0%
ACAGGAACACAAGTTGCTAA+AGG - chr5_2:76491269-76491288 Msa0788850:intron 40.0%
CTTTAGGCAACAAAAAGGGT+TGG + chr5_2:76491313-76491332 None:intergenic 40.0%
TGCCTAAAGATTTGAAGGGT+AGG - chr5_2:76491324-76491343 Msa0788850:CDS 40.0%
CTAAAGATTTGAAGGGTAGG+CGG - chr5_2:76491327-76491346 Msa0788850:CDS 40.0%
TGGTAGACTTTGATCCATCA+AGG - chr5_2:76491375-76491394 Msa0788850:CDS 40.0%
CTCGTATTGTTTCCATTTGG+TGG - chr5_2:76491454-76491473 Msa0788850:intron 40.0%
GATCAGAAGATCCATTTGCA+TGG + chr5_2:76491703-76491722 None:intergenic 40.0%
TTCAAAGAAGCGGAAACAAG+AGG - chr5_2:76491741-76491760 Msa0788850:CDS 40.0%
CTAAAAGCTGTAGGTGAAGT+TGG - chr5_2:76491799-76491818 Msa0788850:CDS 40.0%
CTGTAGGTGAAGTTGGAAAA+GGG - chr5_2:76491806-76491825 Msa0788850:intron 40.0%
TATACTTTCTCAAGCCACCA+AGG - chr5_2:76491842-76491861 Msa0788850:intron 40.0%
TGATTGTAGTATGATCGGTC+CGG - chr5_2:76491963-76491982 Msa0788850:CDS 40.0%
GCACAAGAGTTTGTGTAGAT+TGG - chr5_2:76491990-76492009 Msa0788850:CDS 40.0%
GTAAAGAAGCTGATGTAGTG+TGG - chr5_2:76492090-76492109 Msa0788850:intron 40.0%
!! CGAGTTTTTCAGACTCTAAC+AGG - chr5_2:76492131-76492150 Msa0788850:intron 40.0%
AACGGATCCGTATTTGTGTT+AGG + chr5_2:76492217-76492236 None:intergenic 40.0%
AACACAAATACGGATCCGTT+TGG - chr5_2:76492217-76492236 Msa0788850:five_prime_UTR 40.0%
AAATACGGATCCGTTTGGAT+TGG - chr5_2:76492222-76492241 Msa0788850:five_prime_UTR 40.0%
GAGAATTATTCCATCGGCCA+AGG - chr5_2:76485566-76485585 Msa0788850:three_prime_UTR 45.0%
CTAAAGATATCCTTGGCCGA+TGG + chr5_2:76485579-76485598 None:intergenic 45.0%
TGGATGGAAGCAACTAAGAG+AGG - chr5_2:76485830-76485849 Msa0788850:three_prime_UTR 45.0%
! ATGCCGCTCTTCCGAATTTT+AGG - chr5_2:76485945-76485964 Msa0788850:CDS 45.0%
! GGAGTTTGCGTGCCATATTT+TGG - chr5_2:76486181-76486200 Msa0788850:CDS 45.0%
TGGCTTAGATTGAAAGTGGG+GGG - chr5_2:76486304-76486323 Msa0788850:intron 45.0%
TCGAGGTCTCTACTTTCCAA+AGG - chr5_2:76486398-76486417 Msa0788850:CDS 45.0%
GGTCTCTACTTTCCAAAGGA+AGG - chr5_2:76486402-76486421 Msa0788850:CDS 45.0%
TACTTTCCAAAGGAAGGCGA+AGG - chr5_2:76486408-76486427 Msa0788850:CDS 45.0%
GGATATCAGGACAATCACAG+TGG + chr5_2:76486518-76486537 None:intergenic 45.0%
TTCAATCACTTGCACCACGA+CGG - chr5_2:76486691-76486710 Msa0788850:intron 45.0%
GTTGCATTCTGTCCTGCAAA+TGG + chr5_2:76486822-76486841 None:intergenic 45.0%
GATGGATGACACATGACAAC+TGG + chr5_2:76486859-76486878 None:intergenic 45.0%
GTTGTCATGTGTCATCCATC+GGG - chr5_2:76486859-76486878 Msa0788850:CDS 45.0%
TTGTCATGTGTCATCCATCG+GGG - chr5_2:76486860-76486879 Msa0788850:CDS 45.0%
TGAATGCTGGAGATTGTACG+AGG - chr5_2:76487529-76487548 Msa0788850:CDS 45.0%
ATACATCATTCACGCTCCAC+TGG + chr5_2:76487634-76487653 None:intergenic 45.0%
AGTGGAGCGTGAATGATGTA+TGG - chr5_2:76487633-76487652 Msa0788850:intron 45.0%
! AATTGCAGAAAGCACAGGTG+AGG - chr5_2:76488016-76488035 Msa0788850:intron 45.0%
! GCGTAGTTTTCTTGTCTTGC+TGG - chr5_2:76488084-76488103 Msa0788850:intron 45.0%
GGGAATGTCAGAAATGGGAA+AGG - chr5_2:76488156-76488175 Msa0788850:intron 45.0%
TCGGCATCTATCTCTATCCA+AGG - chr5_2:76488217-76488236 Msa0788850:CDS 45.0%
TGGGGTAAAAAAAGGAGGCT+AGG + chr5_2:76488313-76488332 None:intergenic 45.0%
! ACACTCTGGAAATTTGCTCG+AGG - chr5_2:76488393-76488412 Msa0788850:CDS 45.0%
TATTGAAGGCCTCCCTTTGA+AGG - chr5_2:76488447-76488466 Msa0788850:CDS 45.0%
AGTGTACAGCCTTTAGACTC+TGG - chr5_2:76488475-76488494 Msa0788850:CDS 45.0%
CTAGAAGATGAGGTTCAGGA+GGG + chr5_2:76488718-76488737 None:intergenic 45.0%
GTTCTCTCTTTACAGCTGGA+AGG - chr5_2:76488885-76488904 Msa0788850:intron 45.0%
CTCTTTACAGCTGGAAGGTT+CGG - chr5_2:76488890-76488909 Msa0788850:intron 45.0%
TCTTTACAGCTGGAAGGTTC+GGG - chr5_2:76488891-76488910 Msa0788850:intron 45.0%
GGCAGTCTTCAAAAGAAGTG+GGG - chr5_2:76489063-76489082 Msa0788850:CDS 45.0%
GCAGTCTTCAAAAGAAGTGG+GGG - chr5_2:76489064-76489083 Msa0788850:CDS 45.0%
GATGTGGATGTGCTAATGTC+AGG - chr5_2:76489111-76489130 Msa0788850:intron 45.0%
!! CAGGGAGCATTAAATGGCAA+AGG + chr5_2:76489576-76489595 None:intergenic 45.0%
GACATTCCCACGAGAAAATC+AGG + chr5_2:76489701-76489720 None:intergenic 45.0%
! TCTCATTACCACGGTTGATG+TGG - chr5_2:76489726-76489745 Msa0788850:intron 45.0%
GGACATACAATTACCCAAGG+AGG - chr5_2:76489791-76489810 Msa0788850:CDS 45.0%
CATAGTTTGAGAGCAACTGC+AGG + chr5_2:76489899-76489918 None:intergenic 45.0%
GAGAGAATGAGCAAGCTGTA+GGG - chr5_2:76490183-76490202 Msa0788850:CDS 45.0%
ACTGTAGCCAAGAACATCAC+TGG + chr5_2:76490209-76490228 None:intergenic 45.0%
! ATGATAAAGCATCTGAGGCC+TGG - chr5_2:76490231-76490250 Msa0788850:CDS 45.0%
ACTAGGTGATAATCCAGTCC+AGG + chr5_2:76490252-76490271 None:intergenic 45.0%
AATTGGTCCATACAGATGGG+AGG - chr5_2:76490697-76490716 Msa0788850:CDS 45.0%
AAAATGGTTCAAGGGTGAGG+GGG - chr5_2:76490988-76491007 Msa0788850:intron 45.0%
CAAGTTGCTAAAGGACATGC+TGG - chr5_2:76491278-76491297 Msa0788850:intron 45.0%
CGCCTACCCTTCAAATCTTT+AGG + chr5_2:76491329-76491348 None:intergenic 45.0%
GTAAAGAGGATGCCACCAAA+TGG + chr5_2:76491469-76491488 None:intergenic 45.0%
GGAGAAATCGTATCCTTCCA+AGG - chr5_2:76491588-76491607 Msa0788850:intron 45.0%
GCTGTAGGTGAAGTTGGAAA+AGG - chr5_2:76491805-76491824 Msa0788850:intron 45.0%
!! CTTTAATTTGCGAGCCTTGG+TGG + chr5_2:76491859-76491878 None:intergenic 45.0%
!! CGACTTTAATTTGCGAGCCT+TGG + chr5_2:76491862-76491881 None:intergenic 45.0%
CACAAACTCTTGTGCTCTAC+CGG + chr5_2:76491985-76492004 None:intergenic 45.0%
AGCAAGGTGTGCCAGTATGA+CGG + chr5_2:76486031-76486050 None:intergenic 50.0%
TACTGGCACACCTTGCTTCT+AGG - chr5_2:76486034-76486053 Msa0788850:intron 50.0%
TATGGCACGCAAACTCCCTA+TGG + chr5_2:76486178-76486197 None:intergenic 50.0%
GGCTTAGATTGAAAGTGGGG+GGG - chr5_2:76486305-76486324 Msa0788850:intron 50.0%
TTGCAGCCACTTCAGAGACA+TGG - chr5_2:76486373-76486392 Msa0788850:CDS 50.0%
! TCGACTCCATGTCTCTGAAG+TGG + chr5_2:76486382-76486401 None:intergenic 50.0%
ACTTCAGAGACATGGAGTCG+AGG - chr5_2:76486381-76486400 Msa0788850:CDS 50.0%
CACCACGACGGATCAATCTT+GGG - chr5_2:76486703-76486722 Msa0788850:intron 50.0%
AACCCAAGATTGATCCGTCG+TGG + chr5_2:76486708-76486727 None:intergenic 50.0%
TGTCATGTGTCATCCATCGG+GGG - chr5_2:76486861-76486880 Msa0788850:CDS 50.0%
!! TCCATCGGGGGCATTCAATT+TGG - chr5_2:76486873-76486892 Msa0788850:CDS 50.0%
! TGCATGGAGAAGTGTAGAGG+TGG - chr5_2:76487054-76487073 Msa0788850:intron 50.0%
! ATGGAGAAGTGTAGAGGTGG+TGG - chr5_2:76487057-76487076 Msa0788850:intron 50.0%
!! GTGTAGAGGTGGTGGATTTG+AGG - chr5_2:76487065-76487084 Msa0788850:intron 50.0%
GGAGAAATGCACAATGCCAG+TGG - chr5_2:76487615-76487634 Msa0788850:intron 50.0%
! CACAGGTGAGGCATCTATTG+TGG - chr5_2:76488028-76488047 Msa0788850:intron 50.0%
TAGCCGAGCATGTGCTTAGT+CGG - chr5_2:76488198-76488217 Msa0788850:CDS 50.0%
! ATGCCGACTAAGCACATGCT+CGG + chr5_2:76488204-76488223 None:intergenic 50.0%
!! TCTTTGGCTCATGGTGCTGT+AGG - chr5_2:76488275-76488294 Msa0788850:CDS 50.0%
GAGTGTGCTATCGGATCTGT+GGG + chr5_2:76488379-76488398 None:intergenic 50.0%
AGAGTGTGCTATCGGATCTG+TGG + chr5_2:76488380-76488399 None:intergenic 50.0%
ACAGATCCGATAGCACACTC+TGG - chr5_2:76488379-76488398 Msa0788850:intron 50.0%
CACTAGACACCTTCAAAGGG+AGG + chr5_2:76488459-76488478 None:intergenic 50.0%
GCTAGAAGATGAGGTTCAGG+AGG + chr5_2:76488719-76488738 None:intergenic 50.0%
CTTTACAGCTGGAAGGTTCG+GGG - chr5_2:76488892-76488911 Msa0788850:intron 50.0%
GATGACATGCACTGCAACTG+AGG - chr5_2:76489086-76489105 Msa0788850:intron 50.0%
CACTGCAACTGAGGATGATG+TGG - chr5_2:76489095-76489114 Msa0788850:intron 50.0%
! AGAGGAGGCCATTGAGCTTT+TGG - chr5_2:76489530-76489549 Msa0788850:CDS 50.0%
CATTTAATGCTCCCTGCTCG+CGG - chr5_2:76489580-76489599 Msa0788850:CDS 50.0%
ATGTGGCCATTCCCTTGGTA+AGG - chr5_2:76489743-76489762 Msa0788850:intron 50.0%
TGTGGCCATTCCCTTGGTAA+GGG - chr5_2:76489744-76489763 Msa0788850:intron 50.0%
GAAACCCCTTACCAAGGGAA+TGG + chr5_2:76489752-76489771 None:intergenic 50.0%
AATGACTTGAGCCCGAGTGA+TGG - chr5_2:76489954-76489973 Msa0788850:CDS 50.0%
GGAGAGAATGAGCAAGCTGT+AGG - chr5_2:76490182-76490201 Msa0788850:CDS 50.0%
TGTAGGGCCAGTGATGTTCT+TGG - chr5_2:76490199-76490218 Msa0788850:CDS 50.0%
GATGAGAAGAGAAGCCTCTG+AGG + chr5_2:76490895-76490914 None:intergenic 50.0%
! TCTTTAGGAGGCGATGCCAT+CGG - chr5_2:76491556-76491575 Msa0788850:intron 50.0%
GATACGATTTCTCCCACGTC+AGG + chr5_2:76491582-76491601 None:intergenic 50.0%
GAAGCGGAAACAAGAGGAAG+TGG - chr5_2:76491747-76491766 Msa0788850:CDS 50.0%
CAAGAGGAAGTGGTCGAGAA+AGG - chr5_2:76491757-76491776 Msa0788850:CDS 50.0%
TCGAGAAAGGATACGACCCT+CGG - chr5_2:76491770-76491789 Msa0788850:CDS 50.0%
! CAGCTTTTAGCACCTTCCGA+GGG + chr5_2:76491789-76491808 None:intergenic 50.0%
! ACAGCTTTTAGCACCTTCCG+AGG + chr5_2:76491790-76491809 None:intergenic 50.0%
!! CGGAAGGTGCTAAAAGCTGT+AGG - chr5_2:76491790-76491809 Msa0788850:CDS 50.0%
GCACCACGACGGATCAATCT+TGG - chr5_2:76486702-76486721 Msa0788850:intron 55.0%
GCCAAATTGAATGCCCCCGA+TGG + chr5_2:76486877-76486896 None:intergenic 55.0%
!! CGCGAGCAGGGAGCATTAAA+TGG + chr5_2:76489582-76489601 None:intergenic 55.0%
! GGTTGATGTGGCCATTCCCT+TGG - chr5_2:76489738-76489757 Msa0788850:intron 55.0%
GTGGCCATTCCCTTGGTAAG+GGG - chr5_2:76489745-76489764 Msa0788850:intron 55.0%
! TGCTCAGTTCTGGCCTCCTT+GGG + chr5_2:76489807-76489826 None:intergenic 55.0%
! ATGCTCAGTTCTGGCCTCCT+TGG + chr5_2:76489808-76489827 None:intergenic 55.0%
! AAAGCATCTGAGGCCTGGAC+TGG - chr5_2:76490236-76490255 Msa0788850:CDS 55.0%
TCAAGGGTGAGGGGGTTCAA+TGG - chr5_2:76490996-76491015 Msa0788850:intron 55.0%
GTGAGGGGGTTCAATGGTGA+GGG - chr5_2:76491002-76491021 Msa0788850:intron 55.0%
TGAGGGGGTTCAATGGTGAG+GGG - chr5_2:76491003-76491022 Msa0788850:intron 55.0%
GAAAGGATACGACCCTCGGA+AGG - chr5_2:76491774-76491793 Msa0788850:CDS 55.0%
CCTCTCCCACCTTCAGAGTT+CGG - chr5_2:76492027-76492046 Msa0788850:CDS 55.0%
CGCGGATCACCGGGTTTATG+AGG - chr5_2:76489598-76489617 Msa0788850:CDS 60.0%
GGGAATGGCCACATCAACCG+TGG + chr5_2:76489737-76489756 None:intergenic 60.0%
GGTGAGGGGGTTCAATGGTG+AGG - chr5_2:76491001-76491020 Msa0788850:intron 60.0%
GAGGGGGTTCAATGGTGAGG+GGG - chr5_2:76491004-76491023 Msa0788850:intron 60.0%
TTTGAAGGGTAGGCGGCCAG+AGG - chr5_2:76491334-76491353 Msa0788850:CDS 60.0%
TTTCTCCCACGTCAGGCCGA+TGG + chr5_2:76491575-76491594 None:intergenic 60.0%
! CCGAACTCTGAAGGTGGGAG+AGG + chr5_2:76492030-76492049 None:intergenic 60.0%
! GGCTGCCGAACTCTGAAGGT+GGG + chr5_2:76492035-76492054 None:intergenic 60.0%
TCTGGGCTGCCGAACTCTGA+AGG + chr5_2:76492039-76492058 None:intergenic 60.0%
AGCTGGAAGGTTCGGGGCAC+TGG - chr5_2:76488898-76488917 Msa0788850:intron 65.0%
!! AGGTTCGGGGCACTGGCCAA+TGG - chr5_2:76488905-76488924 Msa0788850:intron 65.0%
AACCCGGTGATCCGCGAGCA+GGG + chr5_2:76489594-76489613 None:intergenic 65.0%
AAACCCGGTGATCCGCGAGC+AGG + chr5_2:76489595-76489614 None:intergenic 65.0%
CGATGCCATCGGCCTGACGT+GGG - chr5_2:76491567-76491586 Msa0788850:intron 65.0%
! GGGCTGCCGAACTCTGAAGG+TGG + chr5_2:76492036-76492055 None:intergenic 65.0%
GCTCCCTGCTCGCGGATCAC+CGG - chr5_2:76489588-76489607 Msa0788850:CDS 70.0%
CTCCCTGCTCGCGGATCACC+GGG - chr5_2:76489589-76489608 Msa0788850:CDS 70.0%
GCGATGCCATCGGCCTGACG+TGG - chr5_2:76491566-76491585 Msa0788850:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 76485523 76492262 76485523 ID=Msa0788850;Name=Msa0788850
chr5_2 mRNA 76485523 76492262 76485523 ID=Msa0788850-mRNA-1;Parent=Msa0788850;Name=Msa0788850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|0.90|0.91|1|1|1|23|386|876
chr5_2 exon 76485523 76486037 76485523 ID=Msa0788850-mRNA-1:exon:23282;Parent=Msa0788850-mRNA-1
chr5_2 exon 76486176 76486265 76486176 ID=Msa0788850-mRNA-1:exon:23281;Parent=Msa0788850-mRNA-1
chr5_2 exon 76486367 76486512 76486367 ID=Msa0788850-mRNA-1:exon:23280;Parent=Msa0788850-mRNA-1
chr5_2 exon 76486857 76486962 76486857 ID=Msa0788850-mRNA-1:exon:23279;Parent=Msa0788850-mRNA-1
chr5_2 exon 76487067 76487159 76487067 ID=Msa0788850-mRNA-1:exon:23278;Parent=Msa0788850-mRNA-1
chr5_2 exon 76487508 76487633 76487508 ID=Msa0788850-mRNA-1:exon:23277;Parent=Msa0788850-mRNA-1
chr5_2 exon 76487796 76487892 76487796 ID=Msa0788850-mRNA-1:exon:23276;Parent=Msa0788850-mRNA-1
chr5_2 exon 76488166 76488303 76488166 ID=Msa0788850-mRNA-1:exon:23275;Parent=Msa0788850-mRNA-1
chr5_2 exon 76488386 76488506 76488386 ID=Msa0788850-mRNA-1:exon:23274;Parent=Msa0788850-mRNA-1
chr5_2 exon 76488596 76488717 76488596 ID=Msa0788850-mRNA-1:exon:23273;Parent=Msa0788850-mRNA-1
chr5_2 exon 76488803 76488885 76488803 ID=Msa0788850-mRNA-1:exon:23272;Parent=Msa0788850-mRNA-1
chr5_2 exon 76488971 76489092 76488971 ID=Msa0788850-mRNA-1:exon:23271;Parent=Msa0788850-mRNA-1
chr5_2 exon 76489289 76489402 76489289 ID=Msa0788850-mRNA-1:exon:23270;Parent=Msa0788850-mRNA-1
chr5_2 exon 76489489 76489632 76489489 ID=Msa0788850-mRNA-1:exon:23269;Parent=Msa0788850-mRNA-1
chr5_2 exon 76489753 76489831 76489753 ID=Msa0788850-mRNA-1:exon:23268;Parent=Msa0788850-mRNA-1
chr5_2 exon 76489929 76490039 76489929 ID=Msa0788850-mRNA-1:exon:23267;Parent=Msa0788850-mRNA-1
chr5_2 exon 76490136 76490310 76490136 ID=Msa0788850-mRNA-1:exon:23266;Parent=Msa0788850-mRNA-1
chr5_2 exon 76490646 76490761 76490646 ID=Msa0788850-mRNA-1:exon:23265;Parent=Msa0788850-mRNA-1
chr5_2 exon 76490858 76490956 76490858 ID=Msa0788850-mRNA-1:exon:23264;Parent=Msa0788850-mRNA-1
chr5_2 exon 76491306 76491406 76491306 ID=Msa0788850-mRNA-1:exon:23263;Parent=Msa0788850-mRNA-1
chr5_2 exon 76491668 76491818 76491668 ID=Msa0788850-mRNA-1:exon:23262;Parent=Msa0788850-mRNA-1
chr5_2 exon 76491916 76492049 76491916 ID=Msa0788850-mRNA-1:exon:23261;Parent=Msa0788850-mRNA-1
chr5_2 exon 76492137 76492262 76492137 ID=Msa0788850-mRNA-1:exon:23260;Parent=Msa0788850-mRNA-1
chr5_2 five_prime_UTR 76492171 76492262 76492171 ID=Msa0788850-mRNA-1:five_prime_utr;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76492137 76492170 76492137 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76491916 76492049 76491916 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76491668 76491818 76491668 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76491306 76491406 76491306 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76490858 76490956 76490858 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76490646 76490761 76490646 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76490136 76490310 76490136 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76489929 76490039 76489929 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76489753 76489831 76489753 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76489489 76489632 76489489 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76489289 76489402 76489289 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76488971 76489092 76488971 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76488803 76488885 76488803 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76488596 76488717 76488596 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76488386 76488506 76488386 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76488166 76488303 76488166 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76487796 76487892 76487796 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76487508 76487633 76487508 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76487067 76487159 76487067 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76486857 76486962 76486857 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76486367 76486512 76486367 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76486176 76486265 76486176 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 CDS 76485909 76486037 76485909 ID=Msa0788850-mRNA-1:cds;Parent=Msa0788850-mRNA-1
chr5_2 three_prime_UTR 76485523 76485908 76485523 ID=Msa0788850-mRNA-1:three_prime_utr;Parent=Msa0788850-mRNA-1
Gene Sequence

>Msa0788850

ATGACGCGTAATAACATTCATAATTCAAAGAATGAAGGAAGTTCCGTTCAAGCTACACCAAAGTATAATTCTAGTATTTTGGAAGACATGTATATGGAGGATACAAAATTAATCAACGAATTTTTTCTTGGATGGAAGCAACTAAGAGAGGCTTTAATTCTACTTAAGGTATGGGCTCGACAGAGAAGTTCAATATATGTTCATGATTGCCTGAATGGATTTTTGCTATCCGTCATACTGGCACACCTTGCTTCTAGGCAACAAATTAGTAGGTCAATGAAGGCAATTGAAATAATTCGCATTACCTTGAACTTCATTGCCACTTCAGAGACATGGAGTCGAGGTCTCTACTTTCCAAAGGAAGGCGAAGGAAATATTACTAAAGAGGTCCAGATCTCTAACCTTCTTTTGTCTACCTTTGACAGAATGCAACTTAAAGGGTCATTTCCAGTTGTCATGTGTCATCCATCGGGGGCATTCAATTTGGCTTTTCGAATGTCTAGGATTGGTTTTTCTCAGCTTCAAGACGAGGCTGCTTTGACACTTAAATGCATGGAGAAGTGTAGAGGTGGTGGATTTGAGGAAGTTTTTATGACCAAGATTGACTATGCTGTTAAATATGATTATTGTATGAGAATAAACTTTAAGGGAAACAAGGAGCTATATGCATCAGGGTTTTGTATGGATGATGAATGCTGGAGATTGTACGAGGAGAAAATACATGCTATTTTAGCTAAAGGATTGAATGATAGAGCAAAATTTATTCGAGTAATATGGAGAAATGCACAATGCCAGTGGAGCGTGAATGATGGCTTGTCAATTCTTGATAAAGAGCCCTTGTTCATAGGAATTTCAGTCAGTGATTTGGAGAAAGCATTTAGGATGGTTGATATTGGTCCGAATGCTGAAAGTAAAGAAGAGGCTCTTGAATTTCGGAAGTTTTGGGGAGAAAAATCCGAGCTTAGAAGATTTAAAGACAGTAGAATTGCAGAAAGCACAGTATGGGAATGTCAGAAATGGGAAAGGCATCTGATTTTGAAAAAAATAGCCGAGCATGTGCTTAGTCGGCATCTATCTCTATCCAAGGAAAATATTGTAGTAGTTGTGGATCAACTTGATTTCTCTTTGGCTCATGGTGCTGTAGATCCGATAGCACACTCTGGAAATTTGCTCGAGGCATTTGATCTTCTATCAAAGCGTTTGCGTCTTATTGAAGGCCTCCCTTTGAAGGTGTCTAGTGTACAGCCTTTAGACTCTGCATTCAGGTTTACATCAGTCTTCCCTCCTGAACCTCATCTTCTAGCTAATGAAAAAATTGGATCTCTCAGACTGAATATGTTGGTTCCATCATGCATTCAACCACTAGAAATTATGATTCAGCTGGAAGGTTCGGGGCACTGGCCAATGGATGAAATTGCAATTGAAAAAACAAAATCTAGTTACCTTATTCAAATAGGAAAAAGTCTTCAAAAGAAGTGGGGGATGACATGCACTGCAACTGAGGATGATGTGGATGTGCTAATGTCAGGATATGCATTTCGTCTTAAAATTTTGCATGAGAGGGCCCTTAGTTTACTCAAAGAATTTGGGAATGATAAAAAAACACGGGTACATTCTGCAGACAAGAAACTTTTGATTCGTGGTCAACATGCTAGCATGATTAATGGACTACAAAGTCGTTACCCAATATATGGACCAATAGTTAGACTAGCAAAACGTTGGGCTGCTTCACATCTATTTTCTGCTTGTTTGGTAGAGGAGGCCATTGAGCTTTTGGTTGCTTATCTCTTTCTTAATCCTTTGCCATTTAATGCTCCCTGCTCGCGGATCACCGGGTTTATGAGGTTCCTGCAGTTGCTCTCAAACTATGATTGGACTTATTCTCCTTTGGTTGTTGACATAAATAATGACTTGAGCCCGAGTGATGGAAAAGAAATAAATGATAACTTTTTGCTAAAAAGAAAAAGTCAGGGAGAGAATGAGCAAGCTGTAGGGCCAGTGATGTTCTTGGCTACAGTTTATGATAAAGCATCTGAGGCCTGGACTGGATTATCACCTAGTGCATTGGAACTTAAAAGGTTAGTTGCATATGCTCGAAGCAGTGCAAATTTGTTGATGAAACTCACATTTCAGGAGGAAATTGGTCCATACAGATGGGAGTGCCTTTTGCGAACTCCTTTAAATAACTATGATGCAATCATTCTTCTCCACAAGGACAAACTTGCATATCCTCAGAGGCTTCTCTTCTCATCAGAAGTTGGTCATGGAACACAAGTTGCTAAAGGACATGCTGGTAAGTTCTTCCAACCCTTTTTGTTGCCTAAAGATTTGAAGGGTAGGCGGCCAGAGGAACTTAAAAATAAGTTGCTGGTAGACTTTGATCCATCAAGGTGCTTTATCAAAGATTTAGAGAAAGAGTTTTCCACCAAATTCCAATTATGGCATGATTCTTTAGGAGGCGATGCCATCGGCCTGACGTGGGAGAAATCGTATCCTTCCAAGAAGCGGAAACAAGAGGAAGTGGTCGAGAAAGGATACGACCCTCGGAAGGTGCTAAAAGCTGTAGGTGAAGTTGGAAAAGGGTTTGTGAGAAGTATATACTTTCTCAAGCCACCAAGGCTCGCAAATTAA
Protein sequence

>Msa0788850

MTRNNIHNSKNEGSSVQATPKYNSSILEDMYMEDTKLINEFFLGWKQLREALILLKVWARQRSSIYVHDCLNGFLLSVILAHLASRQQISRSMKAIEIIRITLNFIATSETWSRGLYFPKEGEGNITKEVQISNLLLSTFDRMQLKGSFPVVMCHPSGAFNLAFRMSRIGFSQLQDEAALTLKCMEKCRGGGFEEVFMTKIDYAVKYDYCMRINFKGNKELYASGFCMDDECWRLYEEKIHAILAKGLNDRAKFIRVIWRNAQCQWSVNDGLSILDKEPLFIGISVSDLEKAFRMVDIGPNAESKEEALEFRKFWGEKSELRRFKDSRIAESTVWECQKWERHLILKKIAEHVLSRHLSLSKENIVVVVDQLDFSLAHGAVDPIAHSGNLLEAFDLLSKRLRLIEGLPLKVSSVQPLDSAFRFTSVFPPEPHLLANEKIGSLRLNMLVPSCIQPLEIMIQLEGSGHWPMDEIAIEKTKSSYLIQIGKSLQKKWGMTCTATEDDVDVLMSGYAFRLKILHERALSLLKEFGNDKKTRVHSADKKLLIRGQHASMINGLQSRYPIYGPIVRLAKRWAASHLFSACLVEEAIELLVAYLFLNPLPFNAPCSRITGFMRFLQLLSNYDWTYSPLVVDINNDLSPSDGKEINDNFLLKRKSQGENEQAVGPVMFLATVYDKASEAWTGLSPSALELKRLVAYARSSANLLMKLTFQEEIGPYRWECLLRTPLNNYDAIILLHKDKLAYPQRLLFSSEVGHGTQVAKGHAGKFFQPFLLPKDLKGRRPEELKNKLLVDFDPSRCFIKDLEKEFSTKFQLWHDSLGGDAIGLTWEKSYPSKKRKQEEVVEKGYDPRKVLKAVGEVGKGFVRSIYFLKPPRLAN*