Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159440 | AFK42796.1 | 99.432 | 176 | 1 | 0 | 1 | 176 | 1 | 176 | 9.30e-126 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159440 | sp|Q8W207|CSN2_ARATH | 87.931 | 174 | 21 | 0 | 3 | 176 | 238 | 411 | 1.34e-109 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159440 | I3SRA4 | 99.432 | 176 | 1 | 0 | 1 | 176 | 1 | 176 | 4.44e-126 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1042580 | Msa1159440 | 0.899606 | 1.677617e-77 | -8.615850e-47 |
| Msa1159440 | Msa1159470 | 0.936381 | 1.901916e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159440 | MtrunA17_Chr7g0254661 | 100.000 | 174 | 0 | 0 | 3 | 176 | 238 | 411 | 8.56e-126 | 361 |
| Msa1159440 | MtrunA17_Chr3g0139291 | 27.273 | 165 | 118 | 1 | 3 | 165 | 215 | 379 | 2.65e-18 | 81.3 |
| Msa1159440 | MtrunA17_Chr1g0147501 | 26.061 | 165 | 120 | 1 | 3 | 165 | 214 | 378 | 2.22e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159440 | AT2G26990.1 | 87.931 | 174 | 21 | 0 | 3 | 176 | 238 | 411 | 1.36e-110 | 322 |
| Msa1159440 | AT1G29150.2 | 27.273 | 165 | 118 | 1 | 3 | 165 | 212 | 376 | 2.34e-19 | 84.7 |
| Msa1159440 | AT1G29150.1 | 27.273 | 165 | 118 | 1 | 3 | 165 | 212 | 376 | 2.34e-19 | 84.7 |
Find 107 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAATGACCCTGAAATTT+TGG | 0.127892 | 7_4:-49058368 | Msa1159440:CDS |
| GCTACTCGTGTCGCTTATTT+TGG | 0.140084 | 7_4:-49057596 | Msa1159440:CDS |
| GATCCAGAAGGTGCACTTTC+TGG | 0.147949 | 7_4:-49061360 | Msa1159440:five_prime_UTR |
| TCAATGTAATTTCTGATAAA+TGG | 0.196401 | 7_4:+49058139 | None:intergenic |
| ACTTGATAGTAAGTGCTTTC+TGG | 0.201814 | 7_4:+49059150 | None:intergenic |
| TTTGTCATAGCCAAAATTTC+AGG | 0.251146 | 7_4:+49058358 | None:intergenic |
| CAATATTTCATTTCGTTGAT+AGG | 0.253136 | 7_4:+49058324 | None:intergenic |
| TTCTTTGACATTGGGGAATA+TGG | 0.262917 | 7_4:-49060566 | Msa1159440:five_prime_UTR |
| GGTTCGGCTAGCCAGAATTT+TGG | 0.278850 | 7_4:-49060771 | Msa1159440:five_prime_UTR |
| TGCTGTACCTTAGATATAAA+TGG | 0.280335 | 7_4:+49058046 | None:intergenic |
| TGTGAAATCGATTGAGTTAG+AGG | 0.304943 | 7_4:+49063171 | None:intergenic |
| TAAGAAAGGAACTCAACTTT+TGG | 0.311538 | 7_4:-49060342 | Msa1159440:five_prime_UTR |
| AAAGTTGAGTTCCTTTCTTA+TGG | 0.315236 | 7_4:+49060345 | None:intergenic |
| CCTGCAGAAGGCCAAAATTC+TGG | 0.317661 | 7_4:+49060760 | None:intergenic |
| TGAGTTAGAGGATCCGAGTT+AGG | 0.322793 | 7_4:+49063183 | None:intergenic |
| GGGATCCTGATCCTTGTATA+TGG | 0.333383 | 7_4:+49058067 | None:intergenic |
| CAGGATCCCATTTATATCTA+AGG | 0.333424 | 7_4:-49058053 | Msa1159440:intron |
| AATTCCCCATCCAAGGATAA+TGG | 0.342632 | 7_4:-49059123 | Msa1159440:five_prime_UTR |
| TTATTCTGTAGATGCTGATA+TGG | 0.357413 | 7_4:-49061884 | Msa1159440:intron |
| TGTTCTTGCAAACATGTTGA+TGG | 0.362435 | 7_4:-49058565 | Msa1159440:CDS |
| ATTCCCCATCCAAGGATAAT+GGG | 0.364812 | 7_4:-49059122 | Msa1159440:five_prime_UTR |
| CAAGGGCTCTCAGAGTTGTT+TGG | 0.370001 | 7_4:+49060730 | None:intergenic |
| CATTCTCTTCACTCCCTCAC+CGG | 0.374770 | 7_4:-49063245 | Msa1159440:five_prime_UTR |
| AAACCAGAAAGTGCACCTTC+TGG | 0.388675 | 7_4:+49061357 | None:intergenic |
| CTATCAACGAAATGAAATAT+TGG | 0.391350 | 7_4:-49058323 | Msa1159440:CDS |
| TCTATTCTGTCAGATCCTTA+AGG | 0.406357 | 7_4:-49060408 | Msa1159440:intron |
| TCTGAAGTAAATCCATTTGA+TGG | 0.407498 | 7_4:-49058540 | Msa1159440:CDS |
| TTTAAGAATTATGATGAAGC+TGG | 0.408606 | 7_4:-49059021 | Msa1159440:CDS |
| TGGATTATCCCCATTATCCT+TGG | 0.420400 | 7_4:+49059113 | None:intergenic |
| AAAGTGCATAAACAGCATTA+TGG | 0.430939 | 7_4:-49060805 | Msa1159440:five_prime_UTR |
| CAGTTTCTATATCTTACAAC+TGG | 0.447934 | 7_4:-49057513 | Msa1159440:CDS |
| TTTCACACAATCATGGCTTC+CGG | 0.449244 | 7_4:-49063155 | Msa1159440:intron |
| CTATATCTTACAACTGGACT+TGG | 0.450561 | 7_4:-49057507 | None:intergenic |
| TGATCAAGTGAACCGGCTCT+TGG | 0.452232 | 7_4:-49057551 | Msa1159440:CDS |
| CTGTAGCTGCGTCAGCCCAC+TGG | 0.464009 | 7_4:+49059058 | None:intergenic |
| GATGCTGATATGGAGGACTA+TGG | 0.466037 | 7_4:-49061874 | Msa1159440:five_prime_UTR |
| GCTGTACCTTAGATATAAAT+GGG | 0.469818 | 7_4:+49058047 | None:intergenic |
| AGCATTATGGACTATGTCTC+TGG | 0.472310 | 7_4:-49060792 | Msa1159440:five_prime_UTR |
| AAGAGATGATGGAAGCCTAC+AGG | 0.473002 | 7_4:-49060875 | Msa1159440:five_prime_UTR |
| AAGATCTGTGAAGTTCCTTA+AGG | 0.474071 | 7_4:+49060393 | None:intergenic |
| CAATCGATTTCACACAATCA+TGG | 0.478997 | 7_4:-49063162 | Msa1159440:five_prime_UTR |
| ATTCTCTTCACTCCCTCACC+GGG | 0.485352 | 7_4:-49063244 | Msa1159440:five_prime_UTR |
| TTAAGAATTATGATGAAGCT+GGG | 0.488805 | 7_4:-49059020 | Msa1159440:CDS |
| GACACATTGATCAAGTGAAC+CGG | 0.491543 | 7_4:-49057558 | Msa1159440:CDS |
| AATCAATATTACAATTCAAA+AGG | 0.491929 | 7_4:-49061802 | Msa1159440:intron |
| GTCAAGCTTTATTATAGACT+TGG | 0.493826 | 7_4:-49060906 | Msa1159440:five_prime_UTR |
| GAGTTAGAGGATCCGAGTTA+GGG | 0.494286 | 7_4:+49063184 | None:intergenic |
| TGCACATGGCAGAGCGCCAG+TGG | 0.497198 | 7_4:-49059074 | Msa1159440:CDS |
| TGGAAGGTATAAAGAGATGA+TGG | 0.498197 | 7_4:-49060886 | Msa1159440:five_prime_UTR |
| TTGTCATAGCCAAAATTTCA+GGG | 0.501810 | 7_4:+49058359 | None:intergenic |
| AGTAAATCCATTTGATGGGC+AGG | 0.506781 | 7_4:-49058535 | Msa1159440:CDS |
| AGCTGCTCAACATCATGCTC+AGG | 0.507745 | 7_4:+49057616 | None:intergenic |
| CGGTGAGGGAGTGAAGAGAA+TGG | 0.508161 | 7_4:+49063246 | None:intergenic |
| TCAAACCATATACAAGGATC+AGG | 0.511702 | 7_4:-49058072 | Msa1159440:CDS |
| GGCTCTTGGAACGCTCTGAT+AGG | 0.517303 | 7_4:-49057537 | Msa1159440:CDS |
| TTAGCCTCCTGCCCATCAAA+TGG | 0.517684 | 7_4:+49058528 | None:intergenic |
| TATGGACTATGTCTCTGGTT+CGG | 0.519186 | 7_4:-49060787 | Msa1159440:five_prime_UTR |
| CCGGTGATGTGTGTGCGCTT+AGG | 0.520530 | 7_4:+49063296 | None:intergenic |
| GGAATATGGTCGGATGAGTA+AGG | 0.522377 | 7_4:-49060552 | Msa1159440:intron |
| TTATCCCCATTATCCTTGGA+TGG | 0.523746 | 7_4:+49059117 | None:intergenic |
| TATCCCCATTATCCTTGGAT+GGG | 0.533048 | 7_4:+49059118 | None:intergenic |
| GGTGAGGGAGTGAAGAGAAT+GGG | 0.536821 | 7_4:+49063247 | None:intergenic |
| GCGTTGCTTACTTCAAGCAT+TGG | 0.536936 | 7_4:+49058983 | None:intergenic |
| ATCCCCATTATCCTTGGATG+GGG | 0.541050 | 7_4:+49059119 | None:intergenic |
| TTGACATTGGGGAATATGGT+CGG | 0.541126 | 7_4:-49060562 | Msa1159440:five_prime_UTR |
| TGACGAGGAACAAGAGGAGC+AGG | 0.542929 | 7_4:-49061839 | Msa1159440:five_prime_UTR |
| CTGAAGTAAATCCATTTGAT+GGG | 0.551373 | 7_4:-49058539 | Msa1159440:CDS |
| TATAGATTGGAGCAGTGAGT+GGG | 0.554067 | 7_4:+49063210 | None:intergenic |
| CAATCTATAAAACCCTAACT+CGG | 0.555489 | 7_4:-49063196 | Msa1159440:five_prime_UTR |
| GGGAGTGAAGAGAATGGGAA+AGG | 0.558322 | 7_4:+49063252 | None:intergenic |
| TATCAGAGCGTTCCAAGAGC+CGG | 0.558355 | 7_4:+49057539 | None:intergenic |
| TTTGGTAGAATTCCTGCAGA+AGG | 0.558473 | 7_4:+49060748 | None:intergenic |
| TTGTTCCATTCGCACTACCT+CGG | 0.563644 | 7_4:+49061332 | None:intergenic |
| TTATAGATTGGAGCAGTGAG+TGG | 0.563997 | 7_4:+49063209 | None:intergenic |
| AACTCTGAGAGCCCTTGAAG+AGG | 0.570714 | 7_4:-49060724 | Msa1159440:five_prime_UTR |
| AACTCATCAAACCATATACA+AGG | 0.571363 | 7_4:-49058078 | Msa1159440:CDS |
| AGCTTTATTATAGACTTGGA+AGG | 0.584874 | 7_4:-49060902 | Msa1159440:five_prime_UTR |
| GAGTAACAGAAGAACCATCA+TGG | 0.585813 | 7_4:-49058167 | Msa1159440:CDS |
| TGGGGATAATCCATGAATGT+GGG | 0.586852 | 7_4:-49059103 | Msa1159440:exon |
| TTCTGTAGATGCTGATATGG+AGG | 0.588074 | 7_4:-49061881 | Msa1159440:intron |
| AGATCTTGTCAACGTGAGGA+TGG | 0.590088 | 7_4:-49060377 | Msa1159440:five_prime_UTR |
| ATGGGGATAATCCATGAATG+TGG | 0.590124 | 7_4:-49059104 | Msa1159440:exon |
| GATAAATGGATCATCCATGA+TGG | 0.594343 | 7_4:+49058153 | None:intergenic |
| TGGAACAAGACAAGGCAGAA+TGG | 0.594639 | 7_4:-49061317 | Msa1159440:intron |
| GGCACAGATGACCATAAGAA+AGG | 0.595066 | 7_4:-49060356 | Msa1159440:five_prime_UTR |
| ATTTATCAGAAATTACATTG+AGG | 0.595350 | 7_4:-49058137 | Msa1159440:CDS |
| GTATGTCAACATCTCCCTGT+AGG | 0.595935 | 7_4:+49060860 | None:intergenic |
| GGAATTTGAGAAAATCCTGA+AGG | 0.598423 | 7_4:-49058302 | Msa1159440:intron |
| AGAGATGATGGAAGCCTACA+GGG | 0.600048 | 7_4:-49060874 | Msa1159440:five_prime_UTR |
| TCAACATGTTTGCAAGAACA+AGG | 0.601457 | 7_4:+49058568 | None:intergenic |
| GAGAATGGGAAAGGAAATAG+CGG | 0.601583 | 7_4:+49063261 | None:intergenic |
| GCACATGGCAGAGCGCCAGT+GGG | 0.609748 | 7_4:-49059073 | Msa1159440:CDS |
| CCTAAGCGCACACACATCAC+CGG | 0.609824 | 7_4:-49063296 | Msa1159440:five_prime_UTR |
| AGTCAGCAATTCCCCATCCA+AGG | 0.617382 | 7_4:-49059130 | Msa1159440:five_prime_UTR |
| GTACTCTGACGAGGAACAAG+AGG | 0.622630 | 7_4:-49061845 | Msa1159440:five_prime_UTR |
| ATGATGAAGCTGGGAATCAG+AGG | 0.623287 | 7_4:-49059011 | Msa1159440:CDS |
| AATGGGAAAGGAAATAGCGG+AGG | 0.625679 | 7_4:+49063264 | None:intergenic |
| GGGGATAATCCATGAATGTG+GGG | 0.625903 | 7_4:-49059102 | Msa1159440:exon |
| TTGGTTGAAACTGATCCAGA+AGG | 0.628433 | 7_4:-49061372 | Msa1159440:five_prime_UTR |
| GCTAAAGAATATCAGAACAC+AGG | 0.632877 | 7_4:-49058110 | Msa1159440:CDS |
| TTCCCCATCCAAGGATAATG+GGG | 0.633586 | 7_4:-49059121 | Msa1159440:five_prime_UTR |
| ATAGCGGAGGAATTAAGTAC+CGG | 0.638979 | 7_4:+49063277 | None:intergenic |
| AAATCCATTTGATGGGCAGG+AGG | 0.647747 | 7_4:-49058532 | Msa1159440:CDS |
| AGTGCGAATGGAACAAGACA+AGG | 0.649447 | 7_4:-49061325 | Msa1159440:five_prime_UTR |
| TCACAGATCTTGTCAACGTG+AGG | 0.658259 | 7_4:-49060381 | Msa1159440:five_prime_UTR |
| GGGATAATCCATGAATGTGG+GGG | 0.692319 | 7_4:-49059101 | Msa1159440:exon |
| TGGATTTGAGTACTCTGACG+AGG | 0.708369 | 7_4:-49061854 | Msa1159440:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAGAAATTTTTTTTTTC+AGG | + | chr7_4:49058405-49058424 | None:intergenic | 10.0% |
| !! | ATACAGTAAAATAATAAATA+TGG | + | chr7_4:49061461-49061480 | None:intergenic | 10.0% |
| !! | TTGATATAATTGAAATTATA+AGG | + | chr7_4:49061633-49061652 | None:intergenic | 10.0% |
| !!! | TCAATTTTTAATTTCTATAA+TGG | - | chr7_4:49061889-49061908 | Msa1159440:intron | 10.0% |
| !! | AATATTTGTATATTGATATT+GGG | - | chr7_4:49062613-49062632 | Msa1159440:intron | 10.0% |
| !! | TAAAAATAATAACTAAAAGC+AGG | + | chr7_4:49058643-49058662 | None:intergenic | 15.0% |
| !!! | ATTTTTAGTTTATTTTTGTG+AGG | - | chr7_4:49058656-49058675 | Msa1159440:intron | 15.0% |
| !! | AATCAATATTACAATTCAAA+AGG | - | chr7_4:49059015-49059034 | Msa1159440:CDS | 15.0% |
| !!! | AATTGAATTTGGTTTATTTT+TGG | - | chr7_4:49059080-49059099 | Msa1159440:CDS | 15.0% |
| !!! | ATTGAATTTGGTTTATTTTT+GGG | - | chr7_4:49059081-49059100 | Msa1159440:CDS | 15.0% |
| !!! | CATTTTAATTTATTTTGACA+AGG | + | chr7_4:49059283-49059302 | None:intergenic | 15.0% |
| !!! | ATGTGTTCTTTTTTTTTTTT+TGG | - | chr7_4:49060290-49060309 | Msa1159440:five_prime_UTR | 15.0% |
| !!! | TGTGTTCTTTTTTTTTTTTT+GGG | - | chr7_4:49060291-49060310 | Msa1159440:five_prime_UTR | 15.0% |
| !!! | ACACATTTTTTTTGTATATA+TGG | - | chr7_4:49060817-49060836 | Msa1159440:five_prime_UTR | 15.0% |
| !! | GTCAAAATAATAGTATATAT+TGG | - | chr7_4:49061286-49061305 | Msa1159440:intron | 15.0% |
| !!! | ATTGAAATTATAAGGATTTT+AGG | + | chr7_4:49061625-49061644 | None:intergenic | 15.0% |
| !! | AAAATAAGATAAATATGTTG+AGG | + | chr7_4:49062585-49062604 | None:intergenic | 15.0% |
| !! | CAATATCAATATACAAATAT+TGG | + | chr7_4:49062614-49062633 | None:intergenic | 15.0% |
| !! | CAATATTTGTATATTGATAT+TGG | - | chr7_4:49062612-49062631 | Msa1159440:intron | 15.0% |
| !!! | TTTTTGATAAAAAAGGTATT+TGG | + | chr7_4:49062882-49062901 | None:intergenic | 15.0% |
| !! | AAATATTACTACTAAAAGAA+AGG | + | chr7_4:49063109-49063128 | None:intergenic | 15.0% |
| !!! | AACTGAATAGTTTAGATTTT+AGG | - | chr7_4:49057869-49057888 | Msa1159440:intron | 20.0% |
| !! | ACATCAGATATTCAATAAAT+CGG | + | chr7_4:49058339-49058358 | None:intergenic | 20.0% |
| !! | TATTGAATATCTGATGTATT+TGG | - | chr7_4:49058342-49058361 | Msa1159440:CDS | 20.0% |
| !!! | TAATTATCTGATTGATAATG+TGG | + | chr7_4:49058369-49058388 | None:intergenic | 20.0% |
| !! | TTGCATTTATGAATTGAATT+TGG | - | chr7_4:49059069-49059088 | Msa1159440:CDS | 20.0% |
| !! | CAAATAACAAAATACAATGA+TGG | + | chr7_4:49059178-49059197 | None:intergenic | 20.0% |
| !! | AAACATAAAACCACAATAAT+AGG | + | chr7_4:49060169-49060188 | None:intergenic | 20.0% |
| !!! | TATCTGCTTTTATTATCTAT+TGG | - | chr7_4:49060843-49060862 | Msa1159440:five_prime_UTR | 20.0% |
| !! | AATCAGTAAAATAATACAAG+AGG | + | chr7_4:49061048-49061067 | None:intergenic | 20.0% |
| !!! | TCTTGTATTATTTTACTGAT+TGG | - | chr7_4:49061047-49061066 | Msa1159440:intron | 20.0% |
| !! | AGGAAATAAATCATCAAATA+TGG | + | chr7_4:49061210-49061229 | None:intergenic | 20.0% |
| !! | AGTCTAGTAATTATATCAAA+GGG | - | chr7_4:49061511-49061530 | Msa1159440:intron | 20.0% |
| !! | ACAAAAAAAACAAGATAAAG+AGG | + | chr7_4:49062324-49062343 | None:intergenic | 20.0% |
| !! | TCAATGTAATTTCTGATAAA+TGG | + | chr7_4:49062681-49062700 | None:intergenic | 20.0% |
| !! | ATTTATCAGAAATTACATTG+AGG | - | chr7_4:49062680-49062699 | Msa1159440:intron | 20.0% |
| !!! | TTAGGTTTTTTACTTTGTAG+TGG | - | chr7_4:49057887-49057906 | Msa1159440:intron | 25.0% |
| ! | TGCTATAGAAATACTCTATT+CGG | - | chr7_4:49058285-49058304 | Msa1159440:intron | 25.0% |
| !! | AAATTTCTTATATTTGGGAC+CGG | - | chr7_4:49058413-49058432 | Msa1159440:intron | 25.0% |
| !!! | AGAAAGCATCTAATTGAATA+GGG | + | chr7_4:49058502-49058521 | None:intergenic | 25.0% |
| !!! | TAGAAAGCATCTAATTGAAT+AGG | + | chr7_4:49058503-49058522 | None:intergenic | 25.0% |
| ! | AAATGATAACATATTCCCTT+AGG | - | chr7_4:49058728-49058747 | Msa1159440:intron | 25.0% |
| ! | ATTCAATTCATAAATGCAAG+CGG | + | chr7_4:49059068-49059087 | None:intergenic | 25.0% |
| ! | AAATCAACTAATCACGTTTA+TGG | + | chr7_4:49059236-49059255 | None:intergenic | 25.0% |
| !!! | TGTTTTGCAATTTTGAGATT+TGG | - | chr7_4:49059333-49059352 | Msa1159440:intron | 25.0% |
| ! | ACTTCATTATGGAACATATA+TGG | - | chr7_4:49059543-49059562 | Msa1159440:intron | 25.0% |
| ! | GGTAACAAGTATAATAAACA+TGG | + | chr7_4:49059864-49059883 | None:intergenic | 25.0% |
| !! | TGTTTATTATACTTGTTACC+AGG | - | chr7_4:49059864-49059883 | Msa1159440:intron | 25.0% |
| !! | GTTTATTATACTTGTTACCA+GGG | - | chr7_4:49059865-49059884 | Msa1159440:intron | 25.0% |
| !! | TTTATTATACTTGTTACCAG+GGG | - | chr7_4:49059866-49059885 | Msa1159440:intron | 25.0% |
| !! | TGTAAGATTTTCTTTGACAT+TGG | - | chr7_4:49060242-49060261 | Msa1159440:intron | 25.0% |
| !! | GTAAGATTTTCTTTGACATT+GGG | - | chr7_4:49060243-49060262 | Msa1159440:intron | 25.0% |
| !! | TAAGATTTTCTTTGACATTG+GGG | - | chr7_4:49060244-49060263 | Msa1159440:intron | 25.0% |
| ! | ATCTGTTTGTATCTATCTAT+TGG | - | chr7_4:49060353-49060372 | Msa1159440:five_prime_UTR | 25.0% |
| !! | ACAAATAAGTTTTGCATGTA+TGG | - | chr7_4:49060780-49060799 | Msa1159440:five_prime_UTR | 25.0% |
| !! | CAAATAAGTTTTGCATGTAT+GGG | - | chr7_4:49060781-49060800 | Msa1159440:five_prime_UTR | 25.0% |
| !! | ATTTTCATGTGAAAACAAGA+TGG | - | chr7_4:49060993-49061012 | Msa1159440:intron | 25.0% |
| ! | AGAAATTCCAACAAATATCA+TGG | + | chr7_4:49061123-49061142 | None:intergenic | 25.0% |
| ! | TCTTGAATCTTAAGTACTAA+AGG | + | chr7_4:49061266-49061285 | None:intergenic | 25.0% |
| ! | GAGTCTAGTAATTATATCAA+AGG | - | chr7_4:49061510-49061529 | Msa1159440:intron | 25.0% |
| ! | GTCTAGTAATTATATCAAAG+GGG | - | chr7_4:49061512-49061531 | Msa1159440:intron | 25.0% |
| ! | TTTAGGTATGAATTGAGAAA+GGG | + | chr7_4:49061608-49061627 | None:intergenic | 25.0% |
| !!! | TTTTAGGTATGAATTGAGAA+AGG | + | chr7_4:49061609-49061628 | None:intergenic | 25.0% |
| ! | TTTAAGAATTATGATGAAGC+TGG | - | chr7_4:49061796-49061815 | Msa1159440:intron | 25.0% |
| ! | TTAAGAATTATGATGAAGCT+GGG | - | chr7_4:49061797-49061816 | Msa1159440:intron | 25.0% |
| ! | ATTAACATAGTTAATTGCAG+AGG | + | chr7_4:49061919-49061938 | None:intergenic | 25.0% |
| ! | CAACAAATTAGTAGCAATTA+TGG | + | chr7_4:49062215-49062234 | None:intergenic | 25.0% |
| !! | CATAATTGCTACTAATTTGT+TGG | - | chr7_4:49062213-49062232 | Msa1159440:intron | 25.0% |
| ! | AGGTAAAAACAAGAAAATGA+GGG | + | chr7_4:49062407-49062426 | None:intergenic | 25.0% |
| ! | TAGGTAAAAACAAGAAAATG+AGG | + | chr7_4:49062408-49062427 | None:intergenic | 25.0% |
| ! | TCTGCAATAAATAATGTGTT+AGG | + | chr7_4:49062427-49062446 | None:intergenic | 25.0% |
| ! | GAATTAGTGGAATAAAGAAA+TGG | - | chr7_4:49062846-49062865 | Msa1159440:intron | 25.0% |
| !!! | ATAAGCCAAACATTATTTTG+TGG | - | chr7_4:49062995-49063014 | Msa1159440:intron | 25.0% |
| !! | ATTTTGGATAACAGAATTCA+AGG | - | chr7_4:49063237-49063256 | Msa1159440:five_prime_UTR | 25.0% |
| CAATCTATAAAACCCTAACT+CGG | - | chr7_4:49057621-49057640 | Msa1159440:CDS | 30.0% | |
| ! | TGAAATAAGCGATTTAGCTT+CGG | + | chr7_4:49057756-49057775 | None:intergenic | 30.0% |
| !! | TTGCATAAGTTTTGTCAGTT+TGG | - | chr7_4:49058202-49058221 | Msa1159440:intron | 30.0% |
| ATTGTTTGTGTATAAGCTGT+CGG | + | chr7_4:49058246-49058265 | None:intergenic | 30.0% | |
| TATCTAAAAGTTACTCCTTC+CGG | + | chr7_4:49058435-49058454 | None:intergenic | 30.0% | |
| TGTTTCTTTGATATATCCAC+AGG | - | chr7_4:49058704-49058723 | Msa1159440:intron | 30.0% | |
| GTTTCTTTGATATATCCACA+GGG | - | chr7_4:49058705-49058724 | Msa1159440:intron | 30.0% | |
| AATATGTTATCATTTCCCTG+TGG | + | chr7_4:49058723-49058742 | None:intergenic | 30.0% | |
| TGTAACCACTTAATGTGTTT+AGG | + | chr7_4:49058909-49058928 | None:intergenic | 30.0% | |
| TTATTCTGTAGATGCTGATA+TGG | - | chr7_4:49058933-49058952 | Msa1159440:intron | 30.0% | |
| ! | ACAGACACAATCTAATTTGT+AGG | + | chr7_4:49059127-49059146 | None:intergenic | 30.0% |
| !! | TGTTGCTTACTAACTAGTTT+TGG | - | chr7_4:49059144-49059163 | Msa1159440:five_prime_UTR | 30.0% |
| ! | TTTAAGATAAGCATCATGAC+TGG | - | chr7_4:49059208-49059227 | Msa1159440:intron | 30.0% |
| !!! | GAGATTTGGTTTTTAGTTTG+TGG | - | chr7_4:49059347-49059366 | Msa1159440:intron | 30.0% |
| ! | TTTTCTCCTGTACTTCATTA+TGG | - | chr7_4:49059532-49059551 | Msa1159440:intron | 30.0% |
| TATGTTCCATAATGAAGTAC+AGG | + | chr7_4:49059541-49059560 | None:intergenic | 30.0% | |
| TATATGGATGTTGAAGTTAG+TGG | - | chr7_4:49059559-49059578 | Msa1159440:intron | 30.0% | |
| ACGCAATAAATAACAGATCA+TGG | + | chr7_4:49059639-49059658 | None:intergenic | 30.0% | |
| ! | GAATGTTTCTCTTTTCGATT+TGG | - | chr7_4:49059687-49059706 | Msa1159440:intron | 30.0% |
| AGAATATGAGTGAGAAACAA+GGG | + | chr7_4:49059769-49059788 | None:intergenic | 30.0% | |
| AAGAATATGAGTGAGAAACA+AGG | + | chr7_4:49059770-49059789 | None:intergenic | 30.0% | |
| AAGATTACAAGACATTACCA+TGG | + | chr7_4:49059807-49059826 | None:intergenic | 30.0% | |
| !! | GTCAAGCTTTATTATAGACT+TGG | - | chr7_4:49059911-49059930 | Msa1159440:intron | 30.0% |
| !! | AGCTTTATTATAGACTTGGA+AGG | - | chr7_4:49059915-49059934 | Msa1159440:intron | 30.0% |
| ! | TGCACTTTTCACTATAGTTA+CGG | + | chr7_4:49060000-49060019 | None:intergenic | 30.0% |
| AAAGTGCATAAACAGCATTA+TGG | - | chr7_4:49060012-49060031 | Msa1159440:intron | 30.0% | |
| AACCACAATAATAGGAGAAA+CGG | + | chr7_4:49060161-49060180 | None:intergenic | 30.0% | |
| AAAGTTGAGTTCCTTTCTTA+TGG | + | chr7_4:49060475-49060494 | None:intergenic | 30.0% | |
| ! | TAAGAAAGGAACTCAACTTT+TGG | - | chr7_4:49060475-49060494 | Msa1159440:intron | 30.0% |
| !!! | CTTGAGTTTTTTGTTGTTCT+TGG | + | chr7_4:49060537-49060556 | None:intergenic | 30.0% |
| CAAGAACAACAAAAAACTCA+AGG | - | chr7_4:49060535-49060554 | Msa1159440:intron | 30.0% | |
| AATATGAAACACCGTGTAAA+CGG | + | chr7_4:49060647-49060666 | None:intergenic | 30.0% | |
| ! | TTGGTTCATCTTCTTTGAAA+AGG | - | chr7_4:49060913-49060932 | Msa1159440:five_prime_UTR | 30.0% |
| ! | TTCATCTTCTTTGAAAAGGA+GGG | - | chr7_4:49060917-49060936 | Msa1159440:five_prime_UTR | 30.0% |
| TCAATGTCCATGATATTTGT+TGG | - | chr7_4:49061113-49061132 | Msa1159440:intron | 30.0% | |
| ! | TAGAGCATTAGATGATTACT+TGG | - | chr7_4:49061177-49061196 | Msa1159440:intron | 30.0% |
| !! | TTTGCTCTTTTAAGCTTTAG+AGG | - | chr7_4:49061343-49061362 | Msa1159440:five_prime_UTR | 30.0% |
| GACAATTCACGTTTAATCAT+AGG | + | chr7_4:49061944-49061963 | None:intergenic | 30.0% | |
| !! | AATCTTTTAACTGCATACTG+TGG | - | chr7_4:49062000-49062019 | Msa1159440:intron | 30.0% |
| GCAGTTAAAAGATAAGTACA+CGG | + | chr7_4:49062071-49062090 | None:intergenic | 30.0% | |
| AAGCATAACTGTGTAATCTA+TGG | + | chr7_4:49062104-49062123 | None:intergenic | 30.0% | |
| ! | TCTGAAGTAAATCCATTTGA+TGG | - | chr7_4:49062277-49062296 | Msa1159440:intron | 30.0% |
| CTGAAGTAAATCCATTTGAT+GGG | - | chr7_4:49062278-49062297 | Msa1159440:intron | 30.0% | |
| AACAAGATAAAGAGGTCTTA+CGG | + | chr7_4:49062316-49062335 | None:intergenic | 30.0% | |
| TTGTCATAGCCAAAATTTCA+GGG | + | chr7_4:49062461-49062480 | None:intergenic | 30.0% | |
| TTTGTCATAGCCAAAATTTC+AGG | + | chr7_4:49062462-49062481 | None:intergenic | 30.0% | |
| ATAAATATGTTGAGGTCGAA+CGG | + | chr7_4:49062577-49062596 | None:intergenic | 30.0% | |
| AACTCATCAAACCATATACA+AGG | - | chr7_4:49062739-49062758 | Msa1159440:intron | 30.0% | |
| GCTGTACCTTAGATATAAAT+GGG | + | chr7_4:49062773-49062792 | None:intergenic | 30.0% | |
| TGCTGTACCTTAGATATAAA+TGG | + | chr7_4:49062774-49062793 | None:intergenic | 30.0% | |
| ATTCCACTAATTCGTTTGTT+GGG | + | chr7_4:49062839-49062858 | None:intergenic | 30.0% | |
| TATTCCACTAATTCGTTTGT+TGG | + | chr7_4:49062840-49062859 | None:intergenic | 30.0% | |
| GTAAGAAAAAGGGAAAACAA+AGG | + | chr7_4:49063032-49063051 | None:intergenic | 30.0% | |
| AATTAAACCCATTAATTCGC+AGG | - | chr7_4:49063167-49063186 | Msa1159440:five_prime_UTR | 30.0% | |
| TTAAGTTCCTGCGAATTAAT+GGG | + | chr7_4:49063177-49063196 | None:intergenic | 30.0% | |
| ATTAAGTTCCTGCGAATTAA+TGG | + | chr7_4:49063178-49063197 | None:intergenic | 30.0% | |
| CAGTTTCTATATCTTACAAC+TGG | - | chr7_4:49063304-49063323 | Msa1159440:five_prime_UTR | 30.0% | |
| !! | CGAGTTAGGGTTTTATAGAT+TGG | + | chr7_4:49057623-49057642 | None:intergenic | 35.0% |
| TGTGAAATCGATTGAGTTAG+AGG | + | chr7_4:49057649-49057668 | None:intergenic | 35.0% | |
| ! | CAATCGATTTCACACAATCA+TGG | - | chr7_4:49057655-49057674 | Msa1159440:intron | 35.0% |
| !! | AAATGAGAAAGAGCGTTTAC+CGG | + | chr7_4:49057684-49057703 | None:intergenic | 35.0% |
| ! | ACCATGACATTGTTATTCTG+GGG | + | chr7_4:49057937-49057956 | None:intergenic | 35.0% |
| ! | CACCATGACATTGTTATTCT+GGG | + | chr7_4:49057938-49057957 | None:intergenic | 35.0% |
| !! | GCGTTTATTTTCTTGTGTTG+AGG | - | chr7_4:49057958-49057977 | Msa1159440:intron | 35.0% |
| ! | TCTTCGCTTCTTTTCAGAAT+TGG | + | chr7_4:49058000-49058019 | None:intergenic | 35.0% |
| !! | TTTTTGATTCAACGTTCCTG+TGG | - | chr7_4:49058063-49058082 | Msa1159440:CDS | 35.0% |
| TATCTCCTCATAAAATCCAC+AGG | + | chr7_4:49058082-49058101 | None:intergenic | 35.0% | |
| TAATTGAATAGGGCCATGTT+TGG | + | chr7_4:49058492-49058511 | None:intergenic | 35.0% | |
| AGTTATGCAAAGGTTAGCAT+TGG | + | chr7_4:49058541-49058560 | None:intergenic | 35.0% | |
| AATGCTAACCTTTGCATAAC+TGG | - | chr7_4:49058540-49058559 | Msa1159440:CDS | 35.0% | |
| ATGCTAACCTTTGCATAACT+GGG | - | chr7_4:49058541-49058560 | Msa1159440:CDS | 35.0% | |
| TAACTAAAAGCAGGTGTGTA+GGG | + | chr7_4:49058634-49058653 | None:intergenic | 35.0% | |
| ATAACTAAAAGCAGGTGTGT+AGG | + | chr7_4:49058635-49058654 | None:intergenic | 35.0% | |
| TACACTAACAAGTGTCCTAA+GGG | + | chr7_4:49058746-49058765 | None:intergenic | 35.0% | |
| TTCAAGACATTATGACTTCG+AGG | - | chr7_4:49058829-49058848 | Msa1159440:intron | 35.0% | |
| CTTAATGTGTTTAGGTCAGT+TGG | + | chr7_4:49058901-49058920 | None:intergenic | 35.0% | |
| ACTGACCTAAACACATTAAG+TGG | - | chr7_4:49058901-49058920 | Msa1159440:intron | 35.0% | |
| ! | TAGTTTGTGGTTCAACTTCA+AGG | - | chr7_4:49059360-49059379 | Msa1159440:intron | 35.0% |
| TCTTCTGCTTGTTTACATAC+AGG | - | chr7_4:49059421-49059440 | Msa1159440:intron | 35.0% | |
| TGCTTGTTTACATACAGGTT+TGG | - | chr7_4:49059426-49059445 | Msa1159440:intron | 35.0% | |
| AACAGATCATGGCATCAATA+TGG | + | chr7_4:49059628-49059647 | None:intergenic | 35.0% | |
| ACATGGCATGCAAAATAGAT+TGG | + | chr7_4:49059847-49059866 | None:intergenic | 35.0% | |
| ! | TGGAAGGTATAAAGAGATGA+TGG | - | chr7_4:49059931-49059950 | Msa1159440:intron | 35.0% |
| ! | GCACTTTTCACTATAGTTAC+GGG | + | chr7_4:49059999-49060018 | None:intergenic | 35.0% |
| !!! | CTCATTTTTTGCCTCTTCAA+GGG | + | chr7_4:49060107-49060126 | None:intergenic | 35.0% |
| TTCTTTGACATTGGGGAATA+TGG | - | chr7_4:49060251-49060270 | Msa1159440:intron | 35.0% | |
| TCTATTCTGTCAGATCCTTA+AGG | - | chr7_4:49060409-49060428 | Msa1159440:intron | 35.0% | |
| AAGATCTGTGAAGTTCCTTA+AGG | + | chr7_4:49060427-49060446 | None:intergenic | 35.0% | |
| ! | TCAGCTTTTAACCGTTTACA+CGG | - | chr7_4:49060633-49060652 | Msa1159440:intron | 35.0% |
| ACGGTGTTTCATATTGTTTG+TGG | - | chr7_4:49060652-49060671 | Msa1159440:intron | 35.0% | |
| AGTACTGTGTCTATCTAGAA+TGG | - | chr7_4:49060732-49060751 | Msa1159440:five_prime_UTR | 35.0% | |
| ! | GTACTGTGTCTATCTAGAAT+GGG | - | chr7_4:49060733-49060752 | Msa1159440:five_prime_UTR | 35.0% |
| ! | TACTGTGTCTATCTAGAATG+GGG | - | chr7_4:49060734-49060753 | Msa1159440:five_prime_UTR | 35.0% |
| ! | ATAAGTTTTGCATGTATGGG+AGG | - | chr7_4:49060784-49060803 | Msa1159440:five_prime_UTR | 35.0% |
| ! | TCCACTAGTGTATTTTCGTT+TGG | - | chr7_4:49060894-49060913 | Msa1159440:five_prime_UTR | 35.0% |
| ACCAAACGAAAATACACTAG+TGG | + | chr7_4:49060898-49060917 | None:intergenic | 35.0% | |
| ! | GTTCATCTTCTTTGAAAAGG+AGG | - | chr7_4:49060916-49060935 | Msa1159440:five_prime_UTR | 35.0% |
| ! | TCATCTTCTTTGAAAAGGAG+GGG | - | chr7_4:49060918-49060937 | Msa1159440:five_prime_UTR | 35.0% |
| TTCACATGAAAATATGAGCC+TGG | + | chr7_4:49060986-49061005 | None:intergenic | 35.0% | |
| !! | GTCGATTTGTCTTATGCTTA+GGG | - | chr7_4:49061069-49061088 | Msa1159440:intron | 35.0% |
| TGACAAATTCTGGTGAACAA+AGG | + | chr7_4:49061096-49061115 | None:intergenic | 35.0% | |
| TCATGGACATTGACAAATTC+TGG | + | chr7_4:49061106-49061125 | None:intergenic | 35.0% | |
| AATACGACTCTAACTACGTA+AGG | + | chr7_4:49061230-49061249 | None:intergenic | 35.0% | |
| !! | GAGGAAGTGTTAGAATATCT+TGG | - | chr7_4:49061362-49061381 | Msa1159440:five_prime_UTR | 35.0% |
| ! | GCATTGTAGAGTATCTTAGA+CGG | - | chr7_4:49061419-49061438 | Msa1159440:intron | 35.0% |
| !! | CATGACTTGTTTCCTTAACT+AGG | - | chr7_4:49061483-49061502 | Msa1159440:intron | 35.0% |
| ACTTGTTTCCTTAACTAGGA+CGG | - | chr7_4:49061487-49061506 | Msa1159440:intron | 35.0% | |
| ! | ACTTGATAGTAAGTGCTTTC+TGG | + | chr7_4:49061670-49061689 | None:intergenic | 35.0% |
| TCAACATGTTTGCAAGAACA+AGG | + | chr7_4:49062252-49062271 | None:intergenic | 35.0% | |
| TGTTCTTGCAAACATGTTGA+TGG | - | chr7_4:49062252-49062271 | Msa1159440:intron | 35.0% | |
| GGAATGGGATAACTGAAAAA+TGG | + | chr7_4:49062350-49062369 | None:intergenic | 35.0% | |
| AAACCATCCTCAACTTAGAA+GGG | + | chr7_4:49062382-49062401 | None:intergenic | 35.0% | |
| ! | CAAGAATGACCCTGAAATTT+TGG | - | chr7_4:49062449-49062468 | Msa1159440:intron | 35.0% |
| GGAATTTGAGAAAATCCTGA+AGG | - | chr7_4:49062515-49062534 | Msa1159440:intron | 35.0% | |
| GACACAATAAAATCACCTTC+AGG | + | chr7_4:49062533-49062552 | None:intergenic | 35.0% | |
| ! | GAAGGTGATTTTATTGTGTC+TGG | - | chr7_4:49062533-49062552 | Msa1159440:intron | 35.0% |
| GATAAATGGATCATCCATGA+TGG | + | chr7_4:49062667-49062686 | None:intergenic | 35.0% | |
| GCTAAAGAATATCAGAACAC+AGG | - | chr7_4:49062707-49062726 | Msa1159440:intron | 35.0% | |
| TCAAACCATATACAAGGATC+AGG | - | chr7_4:49062745-49062764 | Msa1159440:intron | 35.0% | |
| CAGGATCCCATTTATATCTA+AGG | - | chr7_4:49062764-49062783 | Msa1159440:intron | 35.0% | |
| GTTTAAGGGTTATGGTATGT+TGG | - | chr7_4:49062943-49062962 | Msa1159440:intron | 35.0% | |
| TGCGTCCACAAAATAATGTT+TGG | + | chr7_4:49063003-49063022 | None:intergenic | 35.0% | |
| TAGGAAAGGGGTAAGAAAAA+GGG | + | chr7_4:49063042-49063061 | None:intergenic | 35.0% | |
| ATAGGAAAGGGGTAAGAAAA+AGG | + | chr7_4:49063043-49063062 | None:intergenic | 35.0% | |
| AAGGTAACTAGGATAGGAAA+GGG | + | chr7_4:49063055-49063074 | None:intergenic | 35.0% | |
| ! | ATAGCGGAGGAATTAAGTAC+CGG | + | chr7_4:49057543-49057562 | None:intergenic | 40.0% |
| GAGAATGGGAAAGGAAATAG+CGG | + | chr7_4:49057559-49057578 | None:intergenic | 40.0% | |
| GAAAAATAAGAACCCGGTGA+GGG | + | chr7_4:49057588-49057607 | None:intergenic | 40.0% | |
| GAGTGGGAAAAATAAGAACC+CGG | + | chr7_4:49057594-49057613 | None:intergenic | 40.0% | |
| TATAGATTGGAGCAGTGAGT+GGG | + | chr7_4:49057610-49057629 | None:intergenic | 40.0% | |
| TTATAGATTGGAGCAGTGAG+TGG | + | chr7_4:49057611-49057630 | None:intergenic | 40.0% | |
| TTTCACACAATCATGGCTTC+CGG | - | chr7_4:49057662-49057681 | Msa1159440:intron | 40.0% | |
| ACCCCAGAATAACAATGTCA+TGG | - | chr7_4:49057933-49057952 | Msa1159440:intron | 40.0% | |
| ! | CCACCATGACATTGTTATTC+TGG | + | chr7_4:49057939-49057958 | None:intergenic | 40.0% |
| CCAGAATAACAATGTCATGG+TGG | - | chr7_4:49057936-49057955 | Msa1159440:intron | 40.0% | |
| !! | CTTGTGTTGAGGCTAGTTTA+CGG | - | chr7_4:49057969-49057988 | Msa1159440:intron | 40.0% |
| !! | TTGTGTTGAGGCTAGTTTAC+GGG | - | chr7_4:49057970-49057989 | Msa1159440:intron | 40.0% |
| ! | ACGTTCCTGTGGATTTTATG+AGG | - | chr7_4:49058074-49058093 | Msa1159440:CDS | 40.0% |
| ! | TTCTTATATTTGGGACCGGA+AGG | - | chr7_4:49058417-49058436 | Msa1159440:intron | 40.0% |
| TTGCCCTGTTTATCCAAACA+TGG | - | chr7_4:49058476-49058495 | Msa1159440:intron | 40.0% | |
| CTAGATACCCAGTTATGCAA+AGG | + | chr7_4:49058551-49058570 | None:intergenic | 40.0% | |
| GCATAACTGGGTATCTAGTT+CGG | - | chr7_4:49058553-49058572 | Msa1159440:CDS | 40.0% | |
| GTACACTAACAAGTGTCCTA+AGG | + | chr7_4:49058747-49058766 | None:intergenic | 40.0% | |
| ! | ACACTTGTTAGTGTACTCGA+TGG | - | chr7_4:49058751-49058770 | Msa1159440:intron | 40.0% |
| GACATTATGACTTCGAGGTT+TGG | - | chr7_4:49058834-49058853 | Msa1159440:intron | 40.0% | |
| ! | TATGACTTCGAGGTTTGGTT+TGG | - | chr7_4:49058839-49058858 | Msa1159440:intron | 40.0% |
| TTCTGTAGATGCTGATATGG+AGG | - | chr7_4:49058936-49058955 | Msa1159440:intron | 40.0% | |
| ATAAATGCAAGCGGAGAAAG+TGG | + | chr7_4:49059059-49059078 | None:intergenic | 40.0% | |
| TTGGTTGAAACTGATCCAGA+AGG | - | chr7_4:49059445-49059464 | Msa1159440:intron | 40.0% | |
| ATGAGTGAGAAACAAGGGAA+GGG | + | chr7_4:49059764-49059783 | None:intergenic | 40.0% | |
| TATGAGTGAGAAACAAGGGA+AGG | + | chr7_4:49059765-49059784 | None:intergenic | 40.0% | |
| CTTATTCATGTACTGCACCA+TGG | - | chr7_4:49059787-49059806 | Msa1159440:intron | 40.0% | |
| ! | AGCATTATGGACTATGTCTC+TGG | - | chr7_4:49060025-49060044 | Msa1159440:intron | 40.0% |
| ! | TATGGACTATGTCTCTGGTT+CGG | - | chr7_4:49060030-49060049 | Msa1159440:intron | 40.0% |
| TTTGGTAGAATTCCTGCAGA+AGG | + | chr7_4:49060072-49060091 | None:intergenic | 40.0% | |
| !!! | CCTCATTTTTTGCCTCTTCA+AGG | + | chr7_4:49060108-49060127 | None:intergenic | 40.0% |
| CCTTGAAGAGGCAAAAAATG+AGG | - | chr7_4:49060105-49060124 | Msa1159440:intron | 40.0% | |
| CAATAATAGGAGAAACGGTG+AGG | + | chr7_4:49060156-49060175 | None:intergenic | 40.0% | |
| CACCGTTTCTCCTATTATTG+TGG | - | chr7_4:49060156-49060175 | Msa1159440:intron | 40.0% | |
| CACAATCTCTGCAAAATGAG+AGG | + | chr7_4:49060200-49060219 | None:intergenic | 40.0% | |
| ! | CTCTCATTTTGCAGAGATTG+TGG | - | chr7_4:49060198-49060217 | Msa1159440:intron | 40.0% |
| TTGACATTGGGGAATATGGT+CGG | - | chr7_4:49060255-49060274 | Msa1159440:intron | 40.0% | |
| ! | GAAAGGAACTCAACTTTTGG+AGG | - | chr7_4:49060478-49060497 | Msa1159440:intron | 40.0% |
| ATTTGATCCCAAAACACACC+AGG | - | chr7_4:49060965-49060984 | Msa1159440:intron | 40.0% | |
| ! | ATATGAGCCTGGTGTGTTTT+GGG | + | chr7_4:49060975-49060994 | None:intergenic | 40.0% |
| ! | AATATGAGCCTGGTGTGTTT+TGG | + | chr7_4:49060976-49060995 | None:intergenic | 40.0% |
| TCATGTGAAAACAAGATGGC+TGG | - | chr7_4:49060997-49061016 | Msa1159440:intron | 40.0% | |
| !! | GGTCGATTTGTCTTATGCTT+AGG | - | chr7_4:49061068-49061087 | Msa1159440:intron | 40.0% |
| CTTGTTTCCTTAACTAGGAC+GGG | - | chr7_4:49061488-49061507 | Msa1159440:intron | 40.0% | |
| ATTGAGAAAGGGAGAGGAAA+CGG | + | chr7_4:49061597-49061616 | None:intergenic | 40.0% | |
| GTATGAATTGAGAAAGGGAG+AGG | + | chr7_4:49061603-49061622 | None:intergenic | 40.0% | |
| AATTCCCCATCCAAGGATAA+TGG | - | chr7_4:49061694-49061713 | Msa1159440:intron | 40.0% | |
| ATTCCCCATCCAAGGATAAT+GGG | - | chr7_4:49061695-49061714 | Msa1159440:intron | 40.0% | |
| TATCCCCATTATCCTTGGAT+GGG | + | chr7_4:49061702-49061721 | None:intergenic | 40.0% | |
| TTATCCCCATTATCCTTGGA+TGG | + | chr7_4:49061703-49061722 | None:intergenic | 40.0% | |
| TGGATTATCCCCATTATCCT+TGG | + | chr7_4:49061707-49061726 | None:intergenic | 40.0% | |
| ATGGGGATAATCCATGAATG+TGG | - | chr7_4:49061713-49061732 | Msa1159440:intron | 40.0% | |
| TGGGGATAATCCATGAATGT+GGG | - | chr7_4:49061714-49061733 | Msa1159440:intron | 40.0% | |
| ! | AGTAAATCCATTTGATGGGC+AGG | - | chr7_4:49062282-49062301 | Msa1159440:intron | 40.0% |
| GAAACCATCCTCAACTTAGA+AGG | + | chr7_4:49062383-49062402 | None:intergenic | 40.0% | |
| TGATGGTTCTTCTGTTACTC+TGG | + | chr7_4:49062650-49062669 | None:intergenic | 40.0% | |
| GAGTAACAGAAGAACCATCA+TGG | - | chr7_4:49062650-49062669 | Msa1159440:intron | 40.0% | |
| ! | ACTAATTCGTTTGTTGGGCT+GGG | + | chr7_4:49062834-49062853 | None:intergenic | 40.0% |
| ATAACCCTTAAACCAGAGAC+TGG | + | chr7_4:49062936-49062955 | None:intergenic | 40.0% | |
| ! | AGTCTCTGGTTTAAGGGTTA+TGG | - | chr7_4:49062935-49062954 | Msa1159440:intron | 40.0% |
| AGGTAACTAGGATAGGAAAG+GGG | + | chr7_4:49063054-49063073 | None:intergenic | 40.0% | |
| GAAGGTAACTAGGATAGGAA+AGG | + | chr7_4:49063056-49063075 | None:intergenic | 40.0% | |
| CGTTAGAAGGTAACTAGGAT+AGG | + | chr7_4:49063061-49063080 | None:intergenic | 40.0% | |
| TCCTAGTTACCTTCTAACGA+TGG | - | chr7_4:49063062-49063081 | Msa1159440:intron | 40.0% | |
| ACCATCGTTAGAAGGTAACT+AGG | + | chr7_4:49063066-49063085 | None:intergenic | 40.0% | |
| AGTTACCTTCTAACGATGGT+TGG | - | chr7_4:49063066-49063085 | Msa1159440:intron | 40.0% | |
| TCAATCCAACCATCGTTAGA+AGG | + | chr7_4:49063074-49063093 | None:intergenic | 40.0% | |
| GACACATTGATCAAGTGAAC+CGG | - | chr7_4:49063259-49063278 | Msa1159440:five_prime_UTR | 40.0% | |
| AATGGGAAAGGAAATAGCGG+AGG | + | chr7_4:49057556-49057575 | None:intergenic | 45.0% | |
| GGAAAAATAAGAACCCGGTG+AGG | + | chr7_4:49057589-49057608 | None:intergenic | 45.0% | |
| GAGTTAGAGGATCCGAGTTA+GGG | + | chr7_4:49057636-49057655 | None:intergenic | 45.0% | |
| TGAGTTAGAGGATCCGAGTT+AGG | + | chr7_4:49057637-49057656 | None:intergenic | 45.0% | |
| ATGCCTAAGTACGAACACCT+AGG | - | chr7_4:49058145-49058164 | Msa1159440:CDS | 45.0% | |
| TGCCTAAGTACGAACACCTA+GGG | - | chr7_4:49058146-49058165 | Msa1159440:CDS | 45.0% | |
| GGGCCATGTTTGGATAAACA+GGG | + | chr7_4:49058482-49058501 | None:intergenic | 45.0% | |
| AGGGCCATGTTTGGATAAAC+AGG | + | chr7_4:49058483-49058502 | None:intergenic | 45.0% | |
| ! | TGGGTATCTAGTTCGGATAG+CGG | - | chr7_4:49058560-49058579 | Msa1159440:CDS | 45.0% |
| GATGCTGATATGGAGGACTA+TGG | - | chr7_4:49058943-49058962 | Msa1159440:intron | 45.0% | |
| TGGATTTGAGTACTCTGACG+AGG | - | chr7_4:49058963-49058982 | Msa1159440:intron | 45.0% | |
| TGTGGTTCAACTTCAAGGCT+TGG | - | chr7_4:49059365-49059384 | Msa1159440:intron | 45.0% | |
| ! | AAACCAGAAAGTGCACCTTC+TGG | + | chr7_4:49059463-49059482 | None:intergenic | 45.0% |
| TTGTTCCATTCGCACTACCT+CGG | + | chr7_4:49059488-49059507 | None:intergenic | 45.0% | |
| AGTGCGAATGGAACAAGACA+AGG | - | chr7_4:49059492-49059511 | Msa1159440:intron | 45.0% | |
| TGGAACAAGACAAGGCAGAA+TGG | - | chr7_4:49059500-49059519 | Msa1159440:intron | 45.0% | |
| !! | CTTCAGAGCTTTAAATCCCC+TGG | + | chr7_4:49059885-49059904 | None:intergenic | 45.0% |
| !! | AAGAGATGATGGAAGCCTAC+AGG | - | chr7_4:49059942-49059961 | Msa1159440:intron | 45.0% |
| !! | AGAGATGATGGAAGCCTACA+GGG | - | chr7_4:49059943-49059962 | Msa1159440:intron | 45.0% |
| GTATGTCAACATCTCCCTGT+AGG | + | chr7_4:49059960-49059979 | None:intergenic | 45.0% | |
| TAATAGGAGAAACGGTGAGG+CGG | + | chr7_4:49060153-49060172 | None:intergenic | 45.0% | |
| GGAATATGGTCGGATGAGTA+AGG | - | chr7_4:49060265-49060284 | Msa1159440:intron | 45.0% | |
| TCACAGATCTTGTCAACGTG+AGG | - | chr7_4:49060436-49060455 | Msa1159440:intron | 45.0% | |
| AGATCTTGTCAACGTGAGGA+TGG | - | chr7_4:49060440-49060459 | Msa1159440:intron | 45.0% | |
| GGCACAGATGACCATAAGAA+AGG | - | chr7_4:49060461-49060480 | Msa1159440:intron | 45.0% | |
| TTCCCCATCCAAGGATAATG+GGG | - | chr7_4:49061696-49061715 | Msa1159440:intron | 45.0% | |
| ATCCCCATTATCCTTGGATG+GGG | + | chr7_4:49061701-49061720 | None:intergenic | 45.0% | |
| GGGGATAATCCATGAATGTG+GGG | - | chr7_4:49061715-49061734 | Msa1159440:intron | 45.0% | |
| GGGATAATCCATGAATGTGG+GGG | - | chr7_4:49061716-49061735 | Msa1159440:intron | 45.0% | |
| ! | TGCATTTTCCCCCACATTCA+TGG | + | chr7_4:49061727-49061746 | None:intergenic | 45.0% |
| AATGTGGGGGAAAATGCACA+TGG | - | chr7_4:49061729-49061748 | Msa1159440:intron | 45.0% | |
| ATGATGAAGCTGGGAATCAG+AGG | - | chr7_4:49061806-49061825 | Msa1159440:five_prime_UTR | 45.0% | |
| GCGTTGCTTACTTCAAGCAT+TGG | + | chr7_4:49061837-49061856 | None:intergenic | 45.0% | |
| ! | AAATCCATTTGATGGGCAGG+AGG | - | chr7_4:49062285-49062304 | Msa1159440:intron | 45.0% |
| AACTTAGAAGGGCTGGATCA+AGG | + | chr7_4:49062371-49062390 | None:intergenic | 45.0% | |
| GGGATCCTGATCCTTGTATA+TGG | + | chr7_4:49062753-49062772 | None:intergenic | 45.0% | |
| ! | CTAATTCGTTTGTTGGGCTG+GGG | + | chr7_4:49062833-49062852 | None:intergenic | 45.0% |
| ! | CACTAATTCGTTTGTTGGGC+TGG | + | chr7_4:49062835-49062854 | None:intergenic | 45.0% |
| CAGCCCAACAAACGAATTAG+TGG | - | chr7_4:49062833-49062852 | Msa1159440:intron | 45.0% | |
| ! | TCCTACCAGTCTCTGGTTTA+AGG | - | chr7_4:49062928-49062947 | Msa1159440:intron | 45.0% |
| ! | CCTACCAGTCTCTGGTTTAA+GGG | - | chr7_4:49062929-49062948 | Msa1159440:intron | 45.0% |
| TTCTATTCACGATGAGCAGC+AGG | + | chr7_4:49062976-49062995 | None:intergenic | 45.0% | |
| !!! | GCTACTCGTGTCGCTTATTT+TGG | - | chr7_4:49063221-49063240 | Msa1159440:five_prime_UTR | 45.0% |
| !! | AAAAAAAAATTTCTTATATT+TGG | - | chr7_4:49058407-49058426 | Msa1159440:intron | 5.0% |
| !! | AAAAAAAATTTCTTATATTT+GGG | - | chr7_4:49058408-49058427 | Msa1159440:intron | 5.0% |
| !!! | TAAATATTTTTTGATAAAAA+AGG | + | chr7_4:49062889-49062908 | None:intergenic | 5.0% |
| GGGAGTGAAGAGAATGGGAA+AGG | + | chr7_4:49057568-49057587 | None:intergenic | 50.0% | |
| GGTGAGGGAGTGAAGAGAAT+GGG | + | chr7_4:49057573-49057592 | None:intergenic | 50.0% | |
| CATTCTCTTCACTCCCTCAC+CGG | - | chr7_4:49057572-49057591 | Msa1159440:CDS | 50.0% | |
| ATTCTCTTCACTCCCTCACC+GGG | - | chr7_4:49057573-49057592 | Msa1159440:CDS | 50.0% | |
| TGCCCTAGGTGTTCGTACTT+AGG | + | chr7_4:49058151-49058170 | None:intergenic | 50.0% | |
| ACGAACACCTAGGGCATGTT+TGG | - | chr7_4:49058155-49058174 | Msa1159440:CDS | 50.0% | |
| CGTCAATCCAAACATGCCCT+AGG | + | chr7_4:49058165-49058184 | None:intergenic | 50.0% | |
| AGGTGTGTAGGGAATGTGTG+CGG | + | chr7_4:49058623-49058642 | None:intergenic | 50.0% | |
| GTACTCTGACGAGGAACAAG+AGG | - | chr7_4:49058972-49058991 | Msa1159440:intron | 50.0% | |
| ! | GATCCAGAAGGTGCACTTTC+TGG | - | chr7_4:49059457-49059476 | Msa1159440:intron | 50.0% |
| !!! | TGCACTTTCTGGTTTTGCCG+AGG | - | chr7_4:49059468-49059487 | Msa1159440:intron | 50.0% |
| ! | TTTTGCCGAGGTAGTGCGAA+TGG | - | chr7_4:49059480-49059499 | Msa1159440:intron | 50.0% |
| !! | GGTTCGGCTAGCCAGAATTT+TGG | - | chr7_4:49060046-49060065 | Msa1159440:intron | 50.0% |
| CCTGCAGAAGGCCAAAATTC+TGG | + | chr7_4:49060060-49060079 | None:intergenic | 50.0% | |
| !! | CCAGAATTTTGGCCTTCTGC+AGG | - | chr7_4:49060057-49060076 | Msa1159440:intron | 50.0% |
| CAAGGGCTCTCAGAGTTGTT+TGG | + | chr7_4:49060090-49060109 | None:intergenic | 50.0% | |
| ! | AACTCTGAGAGCCCTTGAAG+AGG | - | chr7_4:49060093-49060112 | Msa1159440:intron | 50.0% |
| CTAGACTCCCGTCCTAGTTA+AGG | + | chr7_4:49061498-49061517 | None:intergenic | 50.0% | |
| AGTCAGCAATTCCCCATCCA+AGG | - | chr7_4:49061687-49061706 | Msa1159440:intron | 50.0% | |
| TTAGCCTCCTGCCCATCAAA+TGG | + | chr7_4:49062292-49062311 | None:intergenic | 50.0% | |
| GAAGGGCTGGATCAAGGAAT+GGG | + | chr7_4:49062365-49062384 | None:intergenic | 50.0% | |
| AGAAGGGCTGGATCAAGGAA+TGG | + | chr7_4:49062366-49062385 | None:intergenic | 50.0% | |
| GATCCAGCCCTTCTAAGTTG+AGG | - | chr7_4:49062372-49062391 | Msa1159440:intron | 50.0% | |
| CATCCTCAACTTAGAAGGGC+TGG | + | chr7_4:49062378-49062397 | None:intergenic | 50.0% | |
| ! | CAGCCCTTCTAAGTTGAGGA+TGG | - | chr7_4:49062376-49062395 | Msa1159440:intron | 50.0% |
| CAGCTATTCCTACCAGTCTC+TGG | - | chr7_4:49062921-49062940 | Msa1159440:intron | 50.0% | |
| CCCTTAAACCAGAGACTGGT+AGG | + | chr7_4:49062932-49062951 | None:intergenic | 50.0% | |
| AGCTGCTCAACATCATGCTC+AGG | + | chr7_4:49063204-49063223 | None:intergenic | 50.0% | |
| ! | TGATCAAGTGAACCGGCTCT+TGG | - | chr7_4:49063266-49063285 | Msa1159440:five_prime_UTR | 50.0% |
| ! | TATCAGAGCGTTCCAAGAGC+CGG | + | chr7_4:49063281-49063300 | None:intergenic | 50.0% |
| CCTAAGCGCACACACATCAC+CGG | - | chr7_4:49057521-49057540 | Msa1159440:CDS | 55.0% | |
| CGGTGAGGGAGTGAAGAGAA+TGG | + | chr7_4:49057574-49057593 | None:intergenic | 55.0% | |
| ! | TCGGATAGCGGTCAAGAGTG+TGG | - | chr7_4:49058572-49058591 | Msa1159440:CDS | 55.0% |
| TGACGAGGAACAAGAGGAGC+AGG | - | chr7_4:49058978-49058997 | Msa1159440:intron | 55.0% | |
| GGCTCTTGGAACGCTCTGAT+AGG | - | chr7_4:49063280-49063299 | Msa1159440:five_prime_UTR | 55.0% | |
| CCGGTGATGTGTGTGCGCTT+AGG | + | chr7_4:49057524-49057543 | None:intergenic | 60.0% | |
| ! | CGTTTGTTGGGCTGGGGCAA+GGG | + | chr7_4:49062827-49062846 | None:intergenic | 60.0% |
| ! | TCGTTTGTTGGGCTGGGGCA+AGG | + | chr7_4:49062828-49062847 | None:intergenic | 60.0% |
| ! | TGCACATGGCAGAGCGCCAG+TGG | - | chr7_4:49061743-49061762 | Msa1159440:intron | 65.0% |
| ! | GCACATGGCAGAGCGCCAGT+GGG | - | chr7_4:49061744-49061763 | Msa1159440:intron | 65.0% |
| CTGTAGCTGCGTCAGCCCAC+TGG | + | chr7_4:49061762-49061781 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 49057510 | 49063329 | 49057510 | ID=Msa1159440;Name=Msa1159440 |
| chr7_4 | mRNA | 49057510 | 49063329 | 49057510 | ID=Msa1159440-mRNA-1;Parent=Msa1159440;Name=Msa1159440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=868|1|0.90|1|0.9|0.81|11|0|184 |
| chr7_4 | exon | 49057510 | 49057650 | 49057510 | ID=Msa1159440-mRNA-1:exon:13433;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49058054 | 49058188 | 49058054 | ID=Msa1159440-mRNA-1:exon:13432;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49058303 | 49058393 | 49058303 | ID=Msa1159440-mRNA-1:exon:13431;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49058525 | 49058593 | 49058525 | ID=Msa1159440-mRNA-1:exon:13430;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49058994 | 49059180 | 49058994 | ID=Msa1159440-mRNA-1:exon:13429;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49060283 | 49060417 | 49060283 | ID=Msa1159440-mRNA-1:exon:13428;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49060553 | 49060627 | 49060553 | ID=Msa1159440-mRNA-1:exon:13427;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49060713 | 49060953 | 49060713 | ID=Msa1159440-mRNA-1:exon:13426;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49061318 | 49061396 | 49061318 | ID=Msa1159440-mRNA-1:exon:13425;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49061803 | 49061895 | 49061803 | ID=Msa1159440-mRNA-1:exon:13424;Parent=Msa1159440-mRNA-1 |
| chr7_4 | exon | 49063156 | 49063329 | 49063156 | ID=Msa1159440-mRNA-1:exon:13423;Parent=Msa1159440-mRNA-1 |
| chr7_4 | five_prime_UTR | 49063156 | 49063329 | 49063156 | ID=Msa1159440-mRNA-1:five_prime_utr;Parent=Msa1159440-mRNA-1 |
| chr7_4 | five_prime_UTR | 49061803 | 49061895 | 49061803 | ID=Msa1159440-mRNA-1:five_prime_utr;Parent=Msa1159440-mRNA-1 |
| chr7_4 | five_prime_UTR | 49061318 | 49061396 | 49061318 | ID=Msa1159440-mRNA-1:five_prime_utr;Parent=Msa1159440-mRNA-1 |
| chr7_4 | five_prime_UTR | 49060713 | 49060953 | 49060713 | ID=Msa1159440-mRNA-1:five_prime_utr;Parent=Msa1159440-mRNA-1 |
| chr7_4 | five_prime_UTR | 49060553 | 49060627 | 49060553 | ID=Msa1159440-mRNA-1:five_prime_utr;Parent=Msa1159440-mRNA-1 |
| chr7_4 | five_prime_UTR | 49060283 | 49060417 | 49060283 | ID=Msa1159440-mRNA-1:five_prime_utr;Parent=Msa1159440-mRNA-1 |
| chr7_4 | five_prime_UTR | 49059110 | 49059180 | 49059110 | ID=Msa1159440-mRNA-1:five_prime_utr;Parent=Msa1159440-mRNA-1 |
| chr7_4 | CDS | 49058994 | 49059109 | 49058994 | ID=Msa1159440-mRNA-1:cds;Parent=Msa1159440-mRNA-1 |
| chr7_4 | CDS | 49058525 | 49058593 | 49058525 | ID=Msa1159440-mRNA-1:cds;Parent=Msa1159440-mRNA-1 |
| chr7_4 | CDS | 49058303 | 49058393 | 49058303 | ID=Msa1159440-mRNA-1:cds;Parent=Msa1159440-mRNA-1 |
| chr7_4 | CDS | 49058054 | 49058188 | 49058054 | ID=Msa1159440-mRNA-1:cds;Parent=Msa1159440-mRNA-1 |
| chr7_4 | CDS | 49057510 | 49057650 | 49057510 | ID=Msa1159440-mRNA-1:cds;Parent=Msa1159440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
