AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1159470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159470 MtrunA17_Chr7g0254661 100.000 439 0 0 1 439 1 439 0.0 914
Msa1159470 MtrunA17_Chr3g0139291 24.403 377 265 8 33 400 14 379 5.94e-19 88.6
Msa1159470 MtrunA17_Chr1g0147501 23.077 377 270 7 33 400 13 378 3.90e-18 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159470 AT2G26990.1 86.530 438 59 0 1 438 1 438 0.0 794
Msa1159470 AT1G29150.2 24.847 326 226 7 84 400 61 376 3.96e-18 86.7
Msa1159470 AT1G29150.1 24.847 326 226 7 84 400 61 376 3.96e-18 86.7

Find 123 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAATGACCCTGAAATTT+TGG 0.127892 7_4:-49087497 Msa1159470:CDS
GCTACTCGTGTCGCTTATTT+TGG 0.140084 7_4:-49086725 Msa1159470:CDS
GATCCAGAAGGTGCACTTTC+TGG 0.147949 7_4:-49090489 Msa1159470:CDS
TCAATGTAATTTCTGATAAA+TGG 0.196401 7_4:+49087268 None:intergenic
ACTTGATAGTAAGTGCTTTC+TGG 0.201814 7_4:+49088280 None:intergenic
TTTGTCATAGCCAAAATTTC+AGG 0.251146 7_4:+49087487 None:intergenic
CAATATTTCATTTCGTTGAT+AGG 0.253136 7_4:+49087453 None:intergenic
TTCTTTGACATTGGGGAATA+TGG 0.262917 7_4:-49089695 Msa1159470:CDS
GGTTCGGCTAGCCAGAATTT+TGG 0.278850 7_4:-49089900 Msa1159470:CDS
TGCTGTACCTTAGATATAAA+TGG 0.280335 7_4:+49087175 None:intergenic
AGTATACAGCTGTGGATAAA+TGG 0.289112 7_4:-49086537 Msa1159470:CDS
TGTGAAATCGATTGAGTTAG+AGG 0.304943 7_4:+49092303 None:intergenic
TAAGAAAGGAACTCAACTTT+TGG 0.311538 7_4:-49089472 Msa1159470:CDS
AAAGTTGAGTTCCTTTCTTA+TGG 0.315236 7_4:+49089475 None:intergenic
CCTGCAGAAGGCCAAAATTC+TGG 0.317661 7_4:+49089889 None:intergenic
TGAGTTAGAGGATCCGAGTT+AGG 0.322793 7_4:+49092315 None:intergenic
GGGATCCTGATCCTTGTATA+TGG 0.333383 7_4:+49087196 None:intergenic
CAGGATCCCATTTATATCTA+AGG 0.333424 7_4:-49087182 Msa1159470:intron
AATTCCCCATCCAAGGATAA+TGG 0.342632 7_4:-49088253 Msa1159470:CDS
ATTGTAGGCTGTATGGAGTT+AGG 0.348287 7_4:-49086392 Msa1159470:three_prime_UTR
TTATTCTGTAGATGCTGATA+TGG 0.357413 7_4:-49091013 Msa1159470:intron
TGTTCTTGCAAACATGTTGA+TGG 0.362435 7_4:-49087694 Msa1159470:CDS
CTTGTGAATTAATAGATTGT+AGG 0.364543 7_4:-49086407 Msa1159470:three_prime_UTR
ATTCCCCATCCAAGGATAAT+GGG 0.364812 7_4:-49088252 Msa1159470:CDS
CAAGGGCTCTCAGAGTTGTT+TGG 0.370001 7_4:+49089859 None:intergenic
ACAAGACAAAACTGCAAGTC+AGG 0.370547 7_4:+49086425 None:intergenic
CATTCTCTTCACTCCCTCAC+CGG 0.374770 7_4:-49092377 Msa1159470:five_prime_UTR
TTGTAGGCTGTATGGAGTTA+GGG 0.383250 7_4:-49086391 Msa1159470:three_prime_UTR
AAACCAGAAAGTGCACCTTC+TGG 0.388675 7_4:+49090486 None:intergenic
AATTCATACACCAGACAGTA+TGG 0.390682 7_4:+49086462 None:intergenic
CTATCAACGAAATGAAATAT+TGG 0.391350 7_4:-49087452 Msa1159470:CDS
TCTATTCTGTCAGATCCTTA+AGG 0.406357 7_4:-49089538 Msa1159470:intron
TCTGAAGTAAATCCATTTGA+TGG 0.407498 7_4:-49087669 Msa1159470:CDS
TTTAAGAATTATGATGAAGC+TGG 0.408606 7_4:-49088150 Msa1159470:CDS
TGGATTATCCCCATTATCCT+TGG 0.420400 7_4:+49088243 None:intergenic
AAAGTGCATAAACAGCATTA+TGG 0.430939 7_4:-49089934 Msa1159470:CDS
TTAACCAACTCTGTTGTTGA+TGG 0.434196 7_4:+49086486 None:intergenic
TTAATAGATTGTAGGCTGTA+TGG 0.435720 7_4:-49086399 Msa1159470:three_prime_UTR
TTTCACACAATCATGGCTTC+CGG 0.449244 7_4:-49092287 Msa1159470:intron
TGATCAAGTGAACCGGCTCT+TGG 0.452232 7_4:-49086680 Msa1159470:CDS
ATAACATTGTTCAGGTCAAA+AGG 0.455143 7_4:-49086568 Msa1159470:intron
CTGTAGCTGCGTCAGCCCAC+TGG 0.464009 7_4:+49088187 None:intergenic
GATGCTGATATGGAGGACTA+TGG 0.466037 7_4:-49091003 Msa1159470:CDS
GCTGTACCTTAGATATAAAT+GGG 0.469818 7_4:+49087176 None:intergenic
AGCATTATGGACTATGTCTC+TGG 0.472310 7_4:-49089921 Msa1159470:CDS
AAGAGATGATGGAAGCCTAC+AGG 0.473002 7_4:-49090004 Msa1159470:CDS
AAGATCTGTGAAGTTCCTTA+AGG 0.474071 7_4:+49089523 None:intergenic
CAATCGATTTCACACAATCA+TGG 0.478997 7_4:-49092294 Msa1159470:exon
ATTCTCTTCACTCCCTCACC+GGG 0.485352 7_4:-49092376 Msa1159470:five_prime_UTR
TTAAGAATTATGATGAAGCT+GGG 0.488805 7_4:-49088149 Msa1159470:CDS
GACACATTGATCAAGTGAAC+CGG 0.491543 7_4:-49086687 Msa1159470:CDS
AATCAATATTACAATTCAAA+AGG 0.491929 7_4:-49090931 Msa1159470:intron
GTCAAGCTTTATTATAGACT+TGG 0.493826 7_4:-49090035 Msa1159470:CDS
GAGTTAGAGGATCCGAGTTA+GGG 0.494286 7_4:+49092316 None:intergenic
TGCACATGGCAGAGCGCCAG+TGG 0.497198 7_4:-49088203 Msa1159470:CDS
TGGAAGGTATAAAGAGATGA+TGG 0.498197 7_4:-49090015 Msa1159470:CDS
TTGTCATAGCCAAAATTTCA+GGG 0.501810 7_4:+49087488 None:intergenic
AGTAAATCCATTTGATGGGC+AGG 0.506781 7_4:-49087664 Msa1159470:CDS
AGCTGCTCAACATCATGCTC+AGG 0.507745 7_4:+49086745 None:intergenic
CGGTGAGGGAGTGAAGAGAA+TGG 0.508161 7_4:+49092378 None:intergenic
TCAAACCATATACAAGGATC+AGG 0.511702 7_4:-49087201 Msa1159470:CDS
GGCTCTTGGAACGCTCTGAT+AGG 0.517303 7_4:-49086666 Msa1159470:intron
TTAGCCTCCTGCCCATCAAA+TGG 0.517684 7_4:+49087657 None:intergenic
TATGGACTATGTCTCTGGTT+CGG 0.519186 7_4:-49089916 Msa1159470:CDS
CCGGTGATGTGTGTGCGCTT+AGG 0.520530 7_4:+49092428 None:intergenic
GGAATATGGTCGGATGAGTA+AGG 0.522377 7_4:-49089681 Msa1159470:intron
TTATCCCCATTATCCTTGGA+TGG 0.523746 7_4:+49088247 None:intergenic
TATCCCCATTATCCTTGGAT+GGG 0.533048 7_4:+49088248 None:intergenic
GGTGAGGGAGTGAAGAGAAT+GGG 0.536821 7_4:+49092379 None:intergenic
GCGTTGCTTACTTCAAGCAT+TGG 0.536936 7_4:+49088112 None:intergenic
GTTGGTTAAACCATACTGTC+TGG 0.537218 7_4:-49086472 Msa1159470:exon
ATCCCCATTATCCTTGGATG+GGG 0.541050 7_4:+49088249 None:intergenic
TTGACATTGGGGAATATGGT+CGG 0.541126 7_4:-49089691 Msa1159470:CDS
TGACGAGGAACAAGAGGAGC+AGG 0.542929 7_4:-49090968 Msa1159470:CDS
CTGAAGTAAATCCATTTGAT+GGG 0.551373 7_4:-49087668 Msa1159470:CDS
TATAGATTGGAGCAGTGAGT+GGG 0.554067 7_4:+49092342 None:intergenic
CAATCTATAAAACCCTAACT+CGG 0.555489 7_4:-49092328 Msa1159470:five_prime_UTR
GTAAATCAAGAATCACAAGT+TGG 0.557191 7_4:+49086334 None:intergenic
GGGAGTGAAGAGAATGGGAA+AGG 0.558322 7_4:+49092384 None:intergenic
TATCAGAGCGTTCCAAGAGC+CGG 0.558355 7_4:+49086668 None:intergenic
TTTGGTAGAATTCCTGCAGA+AGG 0.558473 7_4:+49089877 None:intergenic
CAAACCATCAACAACAGAGT+TGG 0.558758 7_4:-49086490 Msa1159470:CDS
TTGTTCCATTCGCACTACCT+CGG 0.563644 7_4:+49090461 None:intergenic
TTATAGATTGGAGCAGTGAG+TGG 0.563997 7_4:+49092341 None:intergenic
AACTCTGAGAGCCCTTGAAG+AGG 0.570714 7_4:-49089853 Msa1159470:CDS
AACTCATCAAACCATATACA+AGG 0.571363 7_4:-49087207 Msa1159470:CDS
AGCTTTATTATAGACTTGGA+AGG 0.584874 7_4:-49090031 Msa1159470:CDS
GAGTAACAGAAGAACCATCA+TGG 0.585813 7_4:-49087296 Msa1159470:CDS
TGGGGATAATCCATGAATGT+GGG 0.586852 7_4:-49088233 Msa1159470:CDS
TTCTGTAGATGCTGATATGG+AGG 0.588074 7_4:-49091010 Msa1159470:intron
TCACAAGTTGGATTTCACTT+CGG 0.588342 7_4:+49086346 None:intergenic
GTAGGCTGTATGGAGTTAGG+GGG 0.590083 7_4:-49086389 Msa1159470:three_prime_UTR
AGATCTTGTCAACGTGAGGA+TGG 0.590088 7_4:-49089507 Msa1159470:CDS
ATGGGGATAATCCATGAATG+TGG 0.590124 7_4:-49088234 Msa1159470:CDS
GATAAATGGATCATCCATGA+TGG 0.594343 7_4:+49087282 None:intergenic
TGGAACAAGACAAGGCAGAA+TGG 0.594639 7_4:-49090446 Msa1159470:intron
GGCACAGATGACCATAAGAA+AGG 0.595066 7_4:-49089486 Msa1159470:CDS
ATTTATCAGAAATTACATTG+AGG 0.595350 7_4:-49087266 Msa1159470:CDS
GTATGTCAACATCTCCCTGT+AGG 0.595935 7_4:+49089989 None:intergenic
GGAATTTGAGAAAATCCTGA+AGG 0.598423 7_4:-49087431 Msa1159470:intron
AGAGATGATGGAAGCCTACA+GGG 0.600048 7_4:-49090003 Msa1159470:CDS
TCAACATGTTTGCAAGAACA+AGG 0.601457 7_4:+49087697 None:intergenic
GAGAATGGGAAAGGAAATAG+CGG 0.601583 7_4:+49092393 None:intergenic
TGTAGGCTGTATGGAGTTAG+GGG 0.603741 7_4:-49086390 Msa1159470:three_prime_UTR
GCACATGGCAGAGCGCCAGT+GGG 0.609748 7_4:-49088202 Msa1159470:CDS
CCTAAGCGCACACACATCAC+CGG 0.609824 7_4:-49092428 Msa1159470:five_prime_UTR
CAAGACAAAACTGCAAGTCA+GGG 0.610796 7_4:+49086426 None:intergenic
AGTCAGCAATTCCCCATCCA+AGG 0.617382 7_4:-49088260 Msa1159470:CDS
GTACTCTGACGAGGAACAAG+AGG 0.622630 7_4:-49090974 Msa1159470:CDS
ATGATGAAGCTGGGAATCAG+AGG 0.623287 7_4:-49088140 Msa1159470:CDS
AATGGGAAAGGAAATAGCGG+AGG 0.625679 7_4:+49092396 None:intergenic
GGGGATAATCCATGAATGTG+GGG 0.625903 7_4:-49088232 Msa1159470:CDS
TTGGTTGAAACTGATCCAGA+AGG 0.628433 7_4:-49090501 Msa1159470:CDS
GCTAAAGAATATCAGAACAC+AGG 0.632877 7_4:-49087239 Msa1159470:CDS
TTCCCCATCCAAGGATAATG+GGG 0.633586 7_4:-49088251 Msa1159470:CDS
ATAGCGGAGGAATTAAGTAC+CGG 0.638979 7_4:+49092409 None:intergenic
GGGATAATCCATGAATGTGG+GGG 0.639797 7_4:-49088231 Msa1159470:CDS
AATGAAGAAGTATACAGCTG+TGG 0.646266 7_4:-49086545 Msa1159470:CDS
AAATCCATTTGATGGGCAGG+AGG 0.647747 7_4:-49087661 Msa1159470:CDS
AGTGCGAATGGAACAAGACA+AGG 0.649447 7_4:-49090454 Msa1159470:CDS
TCACAGATCTTGTCAACGTG+AGG 0.658259 7_4:-49089511 Msa1159470:CDS
GGATAATCCATGAATGTGGG+GGG 0.699496 7_4:-49088230 Msa1159470:CDS
TGGATTTGAGTACTCTGACG+AGG 0.708369 7_4:-49090983 Msa1159470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAGAAATTTTTTTTTTC+AGG + chr7_4:49087146-49087165 None:intergenic 10.0%
!! ATACAGTAAAATAATAAATA+TGG + chr7_4:49090202-49090221 None:intergenic 10.0%
!! TTGATATAATTGAAATTATA+AGG + chr7_4:49090374-49090393 None:intergenic 10.0%
!!! TCAATTTTTAATTTCTATAA+TGG - chr7_4:49090631-49090650 Msa1159470:intron 10.0%
!! AATATTTGTATATTGATATT+GGG - chr7_4:49091355-49091374 Msa1159470:intron 10.0%
!!! TAGATATTTTTTGATAAAAA+AGG + chr7_4:49091631-49091650 None:intergenic 10.0%
!! TAAAAATAATAACTAAAAGC+AGG + chr7_4:49087385-49087404 None:intergenic 15.0%
!!! ATTTTTAGTTTATTTTTGTG+AGG - chr7_4:49087398-49087417 Msa1159470:intron 15.0%
!! AATCAATATTACAATTCAAA+AGG - chr7_4:49087757-49087776 Msa1159470:intron 15.0%
!!! AATTGAATTTGGTTTATTTT+TGG - chr7_4:49087822-49087841 Msa1159470:intron 15.0%
!!! ATTGAATTTGGTTTATTTTT+GGG - chr7_4:49087823-49087842 Msa1159470:intron 15.0%
!!! CATTTTAATTTATTTTGACA+AGG + chr7_4:49088025-49088044 None:intergenic 15.0%
!!! AATGTGTTCTTTTTTTTTTT+TGG - chr7_4:49089031-49089050 Msa1159470:intron 15.0%
!!! ATGTGTTCTTTTTTTTTTTT+GGG - chr7_4:49089032-49089051 Msa1159470:intron 15.0%
!!! ACACATTTTTTTTGTATATA+TGG - chr7_4:49089558-49089577 Msa1159470:intron 15.0%
!! GTCAAAATAATAGTATATAT+TGG - chr7_4:49090027-49090046 Msa1159470:CDS 15.0%
!!! ATTGAAATTATAAGGATTTT+AGG + chr7_4:49090366-49090385 None:intergenic 15.0%
!! AAAATAAGATAAATATGTTG+AGG + chr7_4:49091327-49091346 None:intergenic 15.0%
!! CAATATCAATATACAAATAT+TGG + chr7_4:49091356-49091375 None:intergenic 15.0%
!! CAATATTTGTATATTGATAT+TGG - chr7_4:49091354-49091373 Msa1159470:intron 15.0%
!!! TTTTTGATAAAAAAGGTATT+TGG + chr7_4:49091624-49091643 None:intergenic 15.0%
!! AAATATTACTACTAAAAGAA+AGG + chr7_4:49091851-49091870 None:intergenic 15.0%
!!! AACTGAATAGTTTAGATTTT+AGG - chr7_4:49086608-49086627 Msa1159470:intron 20.0%
!! ACATCAGATATTCAATAAAT+CGG + chr7_4:49087080-49087099 None:intergenic 20.0%
!! TATTGAATATCTGATGTATT+TGG - chr7_4:49087083-49087102 Msa1159470:intron 20.0%
!!! TAATTATCTGATTGATAATG+TGG + chr7_4:49087110-49087129 None:intergenic 20.0%
!! TTGCATTTATGAATTGAATT+TGG - chr7_4:49087811-49087830 Msa1159470:intron 20.0%
!! CAAATAACAAAATACAATGA+TGG + chr7_4:49087920-49087939 None:intergenic 20.0%
!! AAACATAAAACCACAATAAT+AGG + chr7_4:49088911-49088930 None:intergenic 20.0%
!!! TATCTGCTTTTATTATCTAT+TGG - chr7_4:49089584-49089603 Msa1159470:intron 20.0%
!! AATCAGTAAAATAATACAAG+AGG + chr7_4:49089789-49089808 None:intergenic 20.0%
!!! TCTTGTATTATTTTACTGAT+TGG - chr7_4:49089788-49089807 Msa1159470:intron 20.0%
!! AGGAAATAAATCATCAAATA+TGG + chr7_4:49089951-49089970 None:intergenic 20.0%
!! AGTCTAGTAATTATATCAAA+GGG - chr7_4:49090252-49090271 Msa1159470:intron 20.0%
!! ACAAAAAAAACAAGATAAAG+AGG + chr7_4:49091066-49091085 None:intergenic 20.0%
!! TCAATGTAATTTCTGATAAA+TGG + chr7_4:49091423-49091442 None:intergenic 20.0%
!! ATTTATCAGAAATTACATTG+AGG - chr7_4:49091422-49091441 Msa1159470:intron 20.0%
!!! TAAATTGTGTATTTAAAACC+TGG - chr7_4:49092079-49092098 Msa1159470:intron 20.0%
!! TTTAACGTTAATAAAATACC+AGG + chr7_4:49092100-49092119 None:intergenic 20.0%
!!! TTAGGTTTTTTACTTTGTAG+TGG - chr7_4:49086626-49086645 Msa1159470:intron 25.0%
! TGCTATAGAAATACTCTATT+CGG - chr7_4:49087026-49087045 Msa1159470:intron 25.0%
!! AAATTTCTTATATTTGGGAC+CGG - chr7_4:49087154-49087173 Msa1159470:intron 25.0%
!!! AGAAAGCATCTAATTGAATA+GGG + chr7_4:49087243-49087262 None:intergenic 25.0%
!!! TAGAAAGCATCTAATTGAAT+AGG + chr7_4:49087244-49087263 None:intergenic 25.0%
! AAATGATAACATATTCCCTT+AGG - chr7_4:49087470-49087489 Msa1159470:CDS 25.0%
! ATTCAATTCATAAATGCAAG+CGG + chr7_4:49087810-49087829 None:intergenic 25.0%
! AAATCAACTAATCACGTTTA+TGG + chr7_4:49087978-49087997 None:intergenic 25.0%
!!! TGTTTTGCAATTTTGAGATT+TGG - chr7_4:49088075-49088094 Msa1159470:intron 25.0%
! ACTTCATTATGGAACATATA+TGG - chr7_4:49088285-49088304 Msa1159470:CDS 25.0%
! GGTAACAAGTATAATAAACA+TGG + chr7_4:49088606-49088625 None:intergenic 25.0%
!! TGTTTATTATACTTGTTACC+AGG - chr7_4:49088606-49088625 Msa1159470:intron 25.0%
!! GTTTATTATACTTGTTACCA+GGG - chr7_4:49088607-49088626 Msa1159470:intron 25.0%
!! TTTATTATACTTGTTACCAG+GGG - chr7_4:49088608-49088627 Msa1159470:intron 25.0%
!! TGTAAGATTTTCTTTGACAT+TGG - chr7_4:49088984-49089003 Msa1159470:intron 25.0%
!! GTAAGATTTTCTTTGACATT+GGG - chr7_4:49088985-49089004 Msa1159470:intron 25.0%
!! TAAGATTTTCTTTGACATTG+GGG - chr7_4:49088986-49089005 Msa1159470:intron 25.0%
! ATCTGTTTGTATCTATCTAT+TGG - chr7_4:49089094-49089113 Msa1159470:intron 25.0%
!! ACAAATAAGTTTTGCATGTA+TGG - chr7_4:49089521-49089540 Msa1159470:CDS 25.0%
!! CAAATAAGTTTTGCATGTAT+GGG - chr7_4:49089522-49089541 Msa1159470:CDS 25.0%
!! ATTTTCATGTGAAAACAAGA+TGG - chr7_4:49089734-49089753 Msa1159470:CDS 25.0%
! AGAAATTCCAACAAATATCA+TGG + chr7_4:49089864-49089883 None:intergenic 25.0%
! TCTTGAATCTTAAGTACTAA+AGG + chr7_4:49090007-49090026 None:intergenic 25.0%
! GAGTCTAGTAATTATATCAA+AGG - chr7_4:49090251-49090270 Msa1159470:intron 25.0%
! GTCTAGTAATTATATCAAAG+GGG - chr7_4:49090253-49090272 Msa1159470:intron 25.0%
! TTTAGGTATGAATTGAGAAA+GGG + chr7_4:49090349-49090368 None:intergenic 25.0%
!!! TTTTAGGTATGAATTGAGAA+AGG + chr7_4:49090350-49090369 None:intergenic 25.0%
! TTTAAGAATTATGATGAAGC+TGG - chr7_4:49090538-49090557 Msa1159470:intron 25.0%
! TTAAGAATTATGATGAAGCT+GGG - chr7_4:49090539-49090558 Msa1159470:intron 25.0%
! ATTAACATAGTTAATTGCAG+AGG + chr7_4:49090661-49090680 None:intergenic 25.0%
! CAACAAATTAGTAGCAATTA+TGG + chr7_4:49090957-49090976 None:intergenic 25.0%
!! CATAATTGCTACTAATTTGT+TGG - chr7_4:49090955-49090974 Msa1159470:CDS 25.0%
! AGGTAAAAACAAGAAAATGA+GGG + chr7_4:49091149-49091168 None:intergenic 25.0%
! TAGGTAAAAACAAGAAAATG+AGG + chr7_4:49091150-49091169 None:intergenic 25.0%
! TCTGCAATAAATAATGTGTT+AGG + chr7_4:49091169-49091188 None:intergenic 25.0%
! CAATATTTCATTTCGTTGAT+AGG + chr7_4:49091238-49091257 None:intergenic 25.0%
! CTATCAACGAAATGAAATAT+TGG - chr7_4:49091236-49091255 Msa1159470:intron 25.0%
! GAATTAGTGGAATAAAGAAA+TGG - chr7_4:49091588-49091607 Msa1159470:intron 25.0%
!!! ATAAGCCAAACATTATTTTG+TGG - chr7_4:49091737-49091756 Msa1159470:intron 25.0%
!! ATTTTGGATAACAGAATTCA+AGG - chr7_4:49091979-49091998 Msa1159470:intron 25.0%
! ACGTTAAAATAACATTGTTC+AGG - chr7_4:49092112-49092131 Msa1159470:intron 25.0%
! CTTGTGAATTAATAGATTGT+AGG - chr7_4:49092281-49092300 Msa1159470:intron 25.0%
CAATCTATAAAACCCTAACT+CGG - chr7_4:49086360-49086379 Msa1159470:three_prime_UTR 30.0%
! TGAAATAAGCGATTTAGCTT+CGG + chr7_4:49086495-49086514 None:intergenic 30.0%
!! TTGCATAAGTTTTGTCAGTT+TGG - chr7_4:49086943-49086962 Msa1159470:intron 30.0%
ATTGTTTGTGTATAAGCTGT+CGG + chr7_4:49086987-49087006 None:intergenic 30.0%
TATCTAAAAGTTACTCCTTC+CGG + chr7_4:49087176-49087195 None:intergenic 30.0%
TGTTTCTTTGATATATCCAC+AGG - chr7_4:49087446-49087465 Msa1159470:CDS 30.0%
GTTTCTTTGATATATCCACA+GGG - chr7_4:49087447-49087466 Msa1159470:CDS 30.0%
AATATGTTATCATTTCCCTG+TGG + chr7_4:49087465-49087484 None:intergenic 30.0%
TGTAACCACTTAATGTGTTT+AGG + chr7_4:49087651-49087670 None:intergenic 30.0%
TTATTCTGTAGATGCTGATA+TGG - chr7_4:49087675-49087694 Msa1159470:CDS 30.0%
! ACAGACACAATCTAATTTGT+AGG + chr7_4:49087869-49087888 None:intergenic 30.0%
!! TGTTGCTTACTAACTAGTTT+TGG - chr7_4:49087886-49087905 Msa1159470:intron 30.0%
! TTTAAGATAAGCATCATGAC+TGG - chr7_4:49087950-49087969 Msa1159470:intron 30.0%
!!! GAGATTTGGTTTTTAGTTTG+TGG - chr7_4:49088089-49088108 Msa1159470:intron 30.0%
! TTTTCTCCTGTACTTCATTA+TGG - chr7_4:49088274-49088293 Msa1159470:CDS 30.0%
TATGTTCCATAATGAAGTAC+AGG + chr7_4:49088283-49088302 None:intergenic 30.0%
TATATGGATGTTGAAGTTAG+TGG - chr7_4:49088301-49088320 Msa1159470:intron 30.0%
ACGCAATAAATAACAGATCA+TGG + chr7_4:49088381-49088400 None:intergenic 30.0%
! GAATGTTTCTCTTTTCGATT+TGG - chr7_4:49088429-49088448 Msa1159470:intron 30.0%
AGAATATGAGTGAGAAACAA+GGG + chr7_4:49088511-49088530 None:intergenic 30.0%
AAGAATATGAGTGAGAAACA+AGG + chr7_4:49088512-49088531 None:intergenic 30.0%
AAGATTACAAGACATTACCA+TGG + chr7_4:49088549-49088568 None:intergenic 30.0%
!! GTCAAGCTTTATTATAGACT+TGG - chr7_4:49088653-49088672 Msa1159470:intron 30.0%
!! AGCTTTATTATAGACTTGGA+AGG - chr7_4:49088657-49088676 Msa1159470:intron 30.0%
! TGCACTTTTCACTATAGTTA+CGG + chr7_4:49088742-49088761 None:intergenic 30.0%
AAAGTGCATAAACAGCATTA+TGG - chr7_4:49088754-49088773 Msa1159470:intron 30.0%
AACCACAATAATAGGAGAAA+CGG + chr7_4:49088903-49088922 None:intergenic 30.0%
AAAGTTGAGTTCCTTTCTTA+TGG + chr7_4:49089216-49089235 None:intergenic 30.0%
! TAAGAAAGGAACTCAACTTT+TGG - chr7_4:49089216-49089235 Msa1159470:intron 30.0%
!!! CTTGAGTTTTTTGTTGTTCT+TGG + chr7_4:49089278-49089297 None:intergenic 30.0%
CAAGAACAACAAAAAACTCA+AGG - chr7_4:49089276-49089295 Msa1159470:intron 30.0%
AATATGAAACACCGTGTAAA+CGG + chr7_4:49089388-49089407 None:intergenic 30.0%
! TTGGTTCATCTTCTTTGAAA+AGG - chr7_4:49089654-49089673 Msa1159470:intron 30.0%
! TTCATCTTCTTTGAAAAGGA+GGG - chr7_4:49089658-49089677 Msa1159470:intron 30.0%
TCAATGTCCATGATATTTGT+TGG - chr7_4:49089854-49089873 Msa1159470:CDS 30.0%
! TAGAGCATTAGATGATTACT+TGG - chr7_4:49089918-49089937 Msa1159470:CDS 30.0%
!! TTTGCTCTTTTAAGCTTTAG+AGG - chr7_4:49090084-49090103 Msa1159470:intron 30.0%
GACAATTCACGTTTAATCAT+AGG + chr7_4:49090686-49090705 None:intergenic 30.0%
!! AATCTTTTAACTGCATACTG+TGG - chr7_4:49090742-49090761 Msa1159470:intron 30.0%
GCAGTTAAAAGATAAGTACA+CGG + chr7_4:49090813-49090832 None:intergenic 30.0%
AAGCATAACTGTGTAATCTA+TGG + chr7_4:49090846-49090865 None:intergenic 30.0%
! TCTGAAGTAAATCCATTTGA+TGG - chr7_4:49091019-49091038 Msa1159470:intron 30.0%
CTGAAGTAAATCCATTTGAT+GGG - chr7_4:49091020-49091039 Msa1159470:intron 30.0%
AACAAGATAAAGAGGTCTTA+CGG + chr7_4:49091058-49091077 None:intergenic 30.0%
TTGTCATAGCCAAAATTTCA+GGG + chr7_4:49091203-49091222 None:intergenic 30.0%
TTTGTCATAGCCAAAATTTC+AGG + chr7_4:49091204-49091223 None:intergenic 30.0%
ATAAATATGTTGAGGTCGAA+CGG + chr7_4:49091319-49091338 None:intergenic 30.0%
AACTCATCAAACCATATACA+AGG - chr7_4:49091481-49091500 Msa1159470:intron 30.0%
GCTGTACCTTAGATATAAAT+GGG + chr7_4:49091515-49091534 None:intergenic 30.0%
TGCTGTACCTTAGATATAAA+TGG + chr7_4:49091516-49091535 None:intergenic 30.0%
ATTCCACTAATTCGTTTGTT+GGG + chr7_4:49091581-49091600 None:intergenic 30.0%
TATTCCACTAATTCGTTTGT+TGG + chr7_4:49091582-49091601 None:intergenic 30.0%
GTAAGAAAAAGGGAAAACAA+AGG + chr7_4:49091774-49091793 None:intergenic 30.0%
AATTAAACCCATTAATTCGC+AGG - chr7_4:49091909-49091928 Msa1159470:intron 30.0%
TTAAGTTCCTGCGAATTAAT+GGG + chr7_4:49091919-49091938 None:intergenic 30.0%
ATTAAGTTCCTGCGAATTAA+TGG + chr7_4:49091920-49091939 None:intergenic 30.0%
CAGTTTCTATATCTTACAAC+TGG - chr7_4:49092046-49092065 Msa1159470:intron 30.0%
ATAACATTGTTCAGGTCAAA+AGG - chr7_4:49092120-49092139 Msa1159470:intron 30.0%
TTAATAGATTGTAGGCTGTA+TGG - chr7_4:49092289-49092308 Msa1159470:exon 30.0%
GTAAATCAAGAATCACAAGT+TGG + chr7_4:49092357-49092376 None:intergenic 30.0%
!! CGAGTTAGGGTTTTATAGAT+TGG + chr7_4:49086362-49086381 None:intergenic 35.0%
TGTGAAATCGATTGAGTTAG+AGG + chr7_4:49086388-49086407 None:intergenic 35.0%
! CAATCGATTTCACACAATCA+TGG - chr7_4:49086394-49086413 Msa1159470:three_prime_UTR 35.0%
!! AAATGAGAAAGAGCGTTTAC+CGG + chr7_4:49086423-49086442 None:intergenic 35.0%
! ACCATGACATTGTTATTCTG+GGG + chr7_4:49086676-49086695 None:intergenic 35.0%
! CACCATGACATTGTTATTCT+GGG + chr7_4:49086677-49086696 None:intergenic 35.0%
!! GCGTTTATTTTCTTGTGTTG+AGG - chr7_4:49086697-49086716 Msa1159470:CDS 35.0%
! TCTTCGCTTCTTTTCAGAAT+TGG + chr7_4:49086739-49086758 None:intergenic 35.0%
!! TTTTTGATTCAACGTTCCTG+TGG - chr7_4:49086804-49086823 Msa1159470:intron 35.0%
TATCTCCTCATAAAATCCAC+AGG + chr7_4:49086823-49086842 None:intergenic 35.0%
TAATTGAATAGGGCCATGTT+TGG + chr7_4:49087233-49087252 None:intergenic 35.0%
AGTTATGCAAAGGTTAGCAT+TGG + chr7_4:49087282-49087301 None:intergenic 35.0%
AATGCTAACCTTTGCATAAC+TGG - chr7_4:49087281-49087300 Msa1159470:CDS 35.0%
ATGCTAACCTTTGCATAACT+GGG - chr7_4:49087282-49087301 Msa1159470:CDS 35.0%
AACTAAAAGCAGGTGTGTAT+GGG + chr7_4:49087375-49087394 None:intergenic 35.0%
TAACTAAAAGCAGGTGTGTA+TGG + chr7_4:49087376-49087395 None:intergenic 35.0%
TACACTAACAAGTGTCCTAA+GGG + chr7_4:49087488-49087507 None:intergenic 35.0%
TTCAAGACATTATGACTTCG+AGG - chr7_4:49087571-49087590 Msa1159470:intron 35.0%
CTTAATGTGTTTAGGTCAGT+TGG + chr7_4:49087643-49087662 None:intergenic 35.0%
ACTGACCTAAACACATTAAG+TGG - chr7_4:49087643-49087662 Msa1159470:intron 35.0%
! TAGTTTGTGGTTCAACTTCA+AGG - chr7_4:49088102-49088121 Msa1159470:intron 35.0%
TCTTCTGCTTGTTTACATAC+AGG - chr7_4:49088163-49088182 Msa1159470:CDS 35.0%
TGCTTGTTTACATACAGGTT+TGG - chr7_4:49088168-49088187 Msa1159470:CDS 35.0%
AACAGATCATGGCATCAATA+TGG + chr7_4:49088370-49088389 None:intergenic 35.0%
ACATGGCATGCAAAATAGAT+TGG + chr7_4:49088589-49088608 None:intergenic 35.0%
! TGGAAGGTATAAAGAGATGA+TGG - chr7_4:49088673-49088692 Msa1159470:intron 35.0%
! GCACTTTTCACTATAGTTAC+GGG + chr7_4:49088741-49088760 None:intergenic 35.0%
!!! CTCATTTTTTGCCTCTTCAA+GGG + chr7_4:49088849-49088868 None:intergenic 35.0%
TTCTTTGACATTGGGGAATA+TGG - chr7_4:49088993-49089012 Msa1159470:intron 35.0%
TCTATTCTGTCAGATCCTTA+AGG - chr7_4:49089150-49089169 Msa1159470:intron 35.0%
AAGATCTGTGAAGTTCCTTA+AGG + chr7_4:49089168-49089187 None:intergenic 35.0%
! TCAGCTTTTAACCGTTTACA+CGG - chr7_4:49089374-49089393 Msa1159470:intron 35.0%
ACGGTGTTTCATATTGTTTG+TGG - chr7_4:49089393-49089412 Msa1159470:intron 35.0%
AGTACTGTGTCTATCTAGAA+TGG - chr7_4:49089473-49089492 Msa1159470:CDS 35.0%
! GTACTGTGTCTATCTAGAAT+GGG - chr7_4:49089474-49089493 Msa1159470:CDS 35.0%
! TACTGTGTCTATCTAGAATG+GGG - chr7_4:49089475-49089494 Msa1159470:CDS 35.0%
! ATAAGTTTTGCATGTATGGG+AGG - chr7_4:49089525-49089544 Msa1159470:CDS 35.0%
! TCCACTAGTGTATTTTCGTT+TGG - chr7_4:49089635-49089654 Msa1159470:intron 35.0%
ACCAAACGAAAATACACTAG+TGG + chr7_4:49089639-49089658 None:intergenic 35.0%
! GTTCATCTTCTTTGAAAAGG+AGG - chr7_4:49089657-49089676 Msa1159470:intron 35.0%
! TCATCTTCTTTGAAAAGGAG+GGG - chr7_4:49089659-49089678 Msa1159470:intron 35.0%
TTCACATGAAAATATGAGCC+TGG + chr7_4:49089727-49089746 None:intergenic 35.0%
!! GTCGATTTGTCTTATGCTTA+GGG - chr7_4:49089810-49089829 Msa1159470:intron 35.0%
TGACAAATTCTGGTGAACAA+AGG + chr7_4:49089837-49089856 None:intergenic 35.0%
TCATGGACATTGACAAATTC+TGG + chr7_4:49089847-49089866 None:intergenic 35.0%
AATACGACTCTAACTACGTA+AGG + chr7_4:49089971-49089990 None:intergenic 35.0%
!! GAGGAAGTGTTAGAATATCT+TGG - chr7_4:49090103-49090122 Msa1159470:intron 35.0%
! GCATTGTAGAGTATCTTAGA+CGG - chr7_4:49090160-49090179 Msa1159470:intron 35.0%
!! CATGACTTGTTTCCTTAACT+AGG - chr7_4:49090224-49090243 Msa1159470:intron 35.0%
! ACTTGATAGTAAGTGCTTTC+TGG + chr7_4:49090411-49090430 None:intergenic 35.0%
TCAACATGTTTGCAAGAACA+AGG + chr7_4:49090994-49091013 None:intergenic 35.0%
TGTTCTTGCAAACATGTTGA+TGG - chr7_4:49090994-49091013 Msa1159470:CDS 35.0%
GGAATGGGATAACTGAAAAA+TGG + chr7_4:49091092-49091111 None:intergenic 35.0%
AAACCATCCTCAACTTAGAA+GGG + chr7_4:49091124-49091143 None:intergenic 35.0%
! CAAGAATGACCCTGAAATTT+TGG - chr7_4:49091191-49091210 Msa1159470:intron 35.0%
GGAATTTGAGAAAATCCTGA+AGG - chr7_4:49091257-49091276 Msa1159470:intron 35.0%
GACACAATAAAATCACCTTC+AGG + chr7_4:49091275-49091294 None:intergenic 35.0%
! GAAGGTGATTTTATTGTGTC+TGG - chr7_4:49091275-49091294 Msa1159470:intron 35.0%
GATAAATGGATCATCCATGA+TGG + chr7_4:49091409-49091428 None:intergenic 35.0%
GCTAAAGAATATCAGAACAC+AGG - chr7_4:49091449-49091468 Msa1159470:intron 35.0%
TCAAACCATATACAAGGATC+AGG - chr7_4:49091487-49091506 Msa1159470:intron 35.0%
CAGGATCCCATTTATATCTA+AGG - chr7_4:49091506-49091525 Msa1159470:intron 35.0%
GTTTAAGGGTTATGGTATGT+TGG - chr7_4:49091685-49091704 Msa1159470:intron 35.0%
TGCGTCCACAAAATAATGTT+TGG + chr7_4:49091745-49091764 None:intergenic 35.0%
TAGGAAAGGGGTAAGAAAAA+GGG + chr7_4:49091784-49091803 None:intergenic 35.0%
ATAGGAAAGGGGTAAGAAAA+AGG + chr7_4:49091785-49091804 None:intergenic 35.0%
AAGGTAACTAGGATAGGAAA+GGG + chr7_4:49091797-49091816 None:intergenic 35.0%
CTATATCTTACAACTGGACT+TGG - chr7_4:49092052-49092071 Msa1159470:intron 35.0%
! AATGAAGAAGTATACAGCTG+TGG - chr7_4:49092143-49092162 Msa1159470:intron 35.0%
AGTATACAGCTGTGGATAAA+TGG - chr7_4:49092151-49092170 Msa1159470:intron 35.0%
TTAACCAACTCTGTTGTTGA+TGG + chr7_4:49092205-49092224 None:intergenic 35.0%
AATTCATACACCAGACAGTA+TGG + chr7_4:49092229-49092248 None:intergenic 35.0%
TTAGGGGGTTTATTACTCTA+TGG - chr7_4:49092314-49092333 Msa1159470:five_prime_UTR 35.0%
! TCACAAGTTGGATTTCACTT+CGG + chr7_4:49092345-49092364 None:intergenic 35.0%
! ATAGCGGAGGAATTAAGTAC+CGG + chr7_4:49086282-49086301 None:intergenic 40.0%
GAGAATGGGAAAGGAAATAG+CGG + chr7_4:49086298-49086317 None:intergenic 40.0%
GAAAAATAAGAACCCGGTGA+GGG + chr7_4:49086327-49086346 None:intergenic 40.0%
GAGTGGGAAAAATAAGAACC+CGG + chr7_4:49086333-49086352 None:intergenic 40.0%
TATAGATTGGAGCAGTGAGT+GGG + chr7_4:49086349-49086368 None:intergenic 40.0%
TTATAGATTGGAGCAGTGAG+TGG + chr7_4:49086350-49086369 None:intergenic 40.0%
TTTCACACAATCATGGCTTC+CGG - chr7_4:49086401-49086420 Msa1159470:three_prime_UTR 40.0%
ACCCCAGAATAACAATGTCA+TGG - chr7_4:49086672-49086691 Msa1159470:CDS 40.0%
! CCACCATGACATTGTTATTC+TGG + chr7_4:49086678-49086697 None:intergenic 40.0%
CCAGAATAACAATGTCATGG+TGG - chr7_4:49086675-49086694 Msa1159470:CDS 40.0%
!! CTTGTGTTGAGGCTAGTTTA+CGG - chr7_4:49086708-49086727 Msa1159470:CDS 40.0%
!! TTGTGTTGAGGCTAGTTTAC+GGG - chr7_4:49086709-49086728 Msa1159470:CDS 40.0%
! ACGTTCCTGTGGATTTTATG+AGG - chr7_4:49086815-49086834 Msa1159470:intron 40.0%
! TTCTTATATTTGGGACCGGA+AGG - chr7_4:49087158-49087177 Msa1159470:intron 40.0%
TTGCCCTGTTTATCCAAACA+TGG - chr7_4:49087217-49087236 Msa1159470:CDS 40.0%
CTAGATACCCAGTTATGCAA+AGG + chr7_4:49087292-49087311 None:intergenic 40.0%
GCATAACTGGGTATCTAGTT+CGG - chr7_4:49087294-49087313 Msa1159470:CDS 40.0%
GTACACTAACAAGTGTCCTA+AGG + chr7_4:49087489-49087508 None:intergenic 40.0%
! ACACTTGTTAGTGTACTCGA+TGG - chr7_4:49087493-49087512 Msa1159470:CDS 40.0%
GACATTATGACTTCGAGGTT+TGG - chr7_4:49087576-49087595 Msa1159470:intron 40.0%
! TATGACTTCGAGGTTTGGTT+TGG - chr7_4:49087581-49087600 Msa1159470:intron 40.0%
TTCTGTAGATGCTGATATGG+AGG - chr7_4:49087678-49087697 Msa1159470:CDS 40.0%
ATAAATGCAAGCGGAGAAAG+TGG + chr7_4:49087801-49087820 None:intergenic 40.0%
TTGGTTGAAACTGATCCAGA+AGG - chr7_4:49088187-49088206 Msa1159470:CDS 40.0%
ATGAGTGAGAAACAAGGGAA+GGG + chr7_4:49088506-49088525 None:intergenic 40.0%
TATGAGTGAGAAACAAGGGA+AGG + chr7_4:49088507-49088526 None:intergenic 40.0%
CTTATTCATGTACTGCACCA+TGG - chr7_4:49088529-49088548 Msa1159470:intron 40.0%
! AGCATTATGGACTATGTCTC+TGG - chr7_4:49088767-49088786 Msa1159470:intron 40.0%
! TATGGACTATGTCTCTGGTT+CGG - chr7_4:49088772-49088791 Msa1159470:intron 40.0%
TTTGGTAGAATTCCTGCAGA+AGG + chr7_4:49088814-49088833 None:intergenic 40.0%
!!! CCTCATTTTTTGCCTCTTCA+AGG + chr7_4:49088850-49088869 None:intergenic 40.0%
CCTTGAAGAGGCAAAAAATG+AGG - chr7_4:49088847-49088866 Msa1159470:intron 40.0%
CAATAATAGGAGAAACGGTG+AGG + chr7_4:49088898-49088917 None:intergenic 40.0%
CACCGTTTCTCCTATTATTG+TGG - chr7_4:49088898-49088917 Msa1159470:intron 40.0%
CACAATCTCTGCAAAATGAG+AGG + chr7_4:49088942-49088961 None:intergenic 40.0%
! CTCTCATTTTGCAGAGATTG+TGG - chr7_4:49088940-49088959 Msa1159470:intron 40.0%
TTGACATTGGGGAATATGGT+CGG - chr7_4:49088997-49089016 Msa1159470:intron 40.0%
! GAAAGGAACTCAACTTTTGG+AGG - chr7_4:49089219-49089238 Msa1159470:intron 40.0%
ATTTGATCCCAAAACACACC+AGG - chr7_4:49089706-49089725 Msa1159470:CDS 40.0%
! ATATGAGCCTGGTGTGTTTT+GGG + chr7_4:49089716-49089735 None:intergenic 40.0%
! AATATGAGCCTGGTGTGTTT+TGG + chr7_4:49089717-49089736 None:intergenic 40.0%
TCATGTGAAAACAAGATGGC+TGG - chr7_4:49089738-49089757 Msa1159470:intron 40.0%
!! GGTCGATTTGTCTTATGCTT+AGG - chr7_4:49089809-49089828 Msa1159470:intron 40.0%
ATTGAGAAAGGGAGAGGAAA+CGG + chr7_4:49090338-49090357 None:intergenic 40.0%
GTATGAATTGAGAAAGGGAG+AGG + chr7_4:49090344-49090363 None:intergenic 40.0%
AATTCCCCATCCAAGGATAA+TGG - chr7_4:49090435-49090454 Msa1159470:intron 40.0%
ATTCCCCATCCAAGGATAAT+GGG - chr7_4:49090436-49090455 Msa1159470:intron 40.0%
TATCCCCATTATCCTTGGAT+GGG + chr7_4:49090443-49090462 None:intergenic 40.0%
TTATCCCCATTATCCTTGGA+TGG + chr7_4:49090444-49090463 None:intergenic 40.0%
TGGATTATCCCCATTATCCT+TGG + chr7_4:49090448-49090467 None:intergenic 40.0%
ATGGGGATAATCCATGAATG+TGG - chr7_4:49090454-49090473 Msa1159470:CDS 40.0%
TGGGGATAATCCATGAATGT+GGG - chr7_4:49090455-49090474 Msa1159470:CDS 40.0%
! AGTAAATCCATTTGATGGGC+AGG - chr7_4:49091024-49091043 Msa1159470:intron 40.0%
GAAACCATCCTCAACTTAGA+AGG + chr7_4:49091125-49091144 None:intergenic 40.0%
TGATGGTTCTTCTGTTACTC+TGG + chr7_4:49091392-49091411 None:intergenic 40.0%
GAGTAACAGAAGAACCATCA+TGG - chr7_4:49091392-49091411 Msa1159470:intron 40.0%
! ACTAATTCGTTTGTTGGGCT+GGG + chr7_4:49091576-49091595 None:intergenic 40.0%
ATAACCCTTAAACCAGAGAC+TGG + chr7_4:49091678-49091697 None:intergenic 40.0%
! AGTCTCTGGTTTAAGGGTTA+TGG - chr7_4:49091677-49091696 Msa1159470:intron 40.0%
AGGTAACTAGGATAGGAAAG+GGG + chr7_4:49091796-49091815 None:intergenic 40.0%
GAAGGTAACTAGGATAGGAA+AGG + chr7_4:49091798-49091817 None:intergenic 40.0%
CGTTAGAAGGTAACTAGGAT+AGG + chr7_4:49091803-49091822 None:intergenic 40.0%
TCCTAGTTACCTTCTAACGA+TGG - chr7_4:49091804-49091823 Msa1159470:intron 40.0%
ACCATCGTTAGAAGGTAACT+AGG + chr7_4:49091808-49091827 None:intergenic 40.0%
AGTTACCTTCTAACGATGGT+TGG - chr7_4:49091808-49091827 Msa1159470:intron 40.0%
TCAATCCAACCATCGTTAGA+AGG + chr7_4:49091816-49091835 None:intergenic 40.0%
GACACATTGATCAAGTGAAC+CGG - chr7_4:49092001-49092020 Msa1159470:intron 40.0%
CAAACCATCAACAACAGAGT+TGG - chr7_4:49092198-49092217 Msa1159470:intron 40.0%
GTTGGTTAAACCATACTGTC+TGG - chr7_4:49092216-49092235 Msa1159470:intron 40.0%
CAAGACAAAACTGCAAGTCA+GGG + chr7_4:49092265-49092284 None:intergenic 40.0%
ACAAGACAAAACTGCAAGTC+AGG + chr7_4:49092266-49092285 None:intergenic 40.0%
ATTGTAGGCTGTATGGAGTT+AGG - chr7_4:49092296-49092315 Msa1159470:exon 40.0%
TTGTAGGCTGTATGGAGTTA+GGG - chr7_4:49092297-49092316 Msa1159470:exon 40.0%
AATGGGAAAGGAAATAGCGG+AGG + chr7_4:49086295-49086314 None:intergenic 45.0%
GGAAAAATAAGAACCCGGTG+AGG + chr7_4:49086328-49086347 None:intergenic 45.0%
GAGTTAGAGGATCCGAGTTA+GGG + chr7_4:49086375-49086394 None:intergenic 45.0%
TGAGTTAGAGGATCCGAGTT+AGG + chr7_4:49086376-49086395 None:intergenic 45.0%
ATGCCTAAGTACGAACACCT+AGG - chr7_4:49086886-49086905 Msa1159470:intron 45.0%
TGCCTAAGTACGAACACCTA+GGG - chr7_4:49086887-49086906 Msa1159470:intron 45.0%
GGGCCATGTTTGGATAAACA+GGG + chr7_4:49087223-49087242 None:intergenic 45.0%
AGGGCCATGTTTGGATAAAC+AGG + chr7_4:49087224-49087243 None:intergenic 45.0%
! TGGGTATCTAGTTCGGATAG+CGG - chr7_4:49087301-49087320 Msa1159470:intron 45.0%
GATGCTGATATGGAGGACTA+TGG - chr7_4:49087685-49087704 Msa1159470:CDS 45.0%
TGGATTTGAGTACTCTGACG+AGG - chr7_4:49087705-49087724 Msa1159470:intron 45.0%
TGTGGTTCAACTTCAAGGCT+TGG - chr7_4:49088107-49088126 Msa1159470:intron 45.0%
! AAACCAGAAAGTGCACCTTC+TGG + chr7_4:49088205-49088224 None:intergenic 45.0%
TTGTTCCATTCGCACTACCT+CGG + chr7_4:49088230-49088249 None:intergenic 45.0%
AGTGCGAATGGAACAAGACA+AGG - chr7_4:49088234-49088253 Msa1159470:CDS 45.0%
TGGAACAAGACAAGGCAGAA+TGG - chr7_4:49088242-49088261 Msa1159470:CDS 45.0%
!! CTTCAGAGCTTTAAATCCCC+TGG + chr7_4:49088627-49088646 None:intergenic 45.0%
!! AAGAGATGATGGAAGCCTAC+AGG - chr7_4:49088684-49088703 Msa1159470:intron 45.0%
!! AGAGATGATGGAAGCCTACA+GGG - chr7_4:49088685-49088704 Msa1159470:intron 45.0%
GTATGTCAACATCTCCCTGT+AGG + chr7_4:49088702-49088721 None:intergenic 45.0%
TAATAGGAGAAACGGTGAGG+CGG + chr7_4:49088895-49088914 None:intergenic 45.0%
GGAATATGGTCGGATGAGTA+AGG - chr7_4:49089007-49089026 Msa1159470:intron 45.0%
TCACAGATCTTGTCAACGTG+AGG - chr7_4:49089177-49089196 Msa1159470:intron 45.0%
AGATCTTGTCAACGTGAGGA+TGG - chr7_4:49089181-49089200 Msa1159470:intron 45.0%
GGCACAGATGACCATAAGAA+AGG - chr7_4:49089202-49089221 Msa1159470:intron 45.0%
TTCCCCATCCAAGGATAATG+GGG - chr7_4:49090437-49090456 Msa1159470:intron 45.0%
ATCCCCATTATCCTTGGATG+GGG + chr7_4:49090442-49090461 None:intergenic 45.0%
GGGGATAATCCATGAATGTG+GGG - chr7_4:49090456-49090475 Msa1159470:CDS 45.0%
GGGATAATCCATGAATGTGG+GGG - chr7_4:49090457-49090476 Msa1159470:CDS 45.0%
GGATAATCCATGAATGTGGG+GGG - chr7_4:49090458-49090477 Msa1159470:CDS 45.0%
ATGATGAAGCTGGGAATCAG+AGG - chr7_4:49090548-49090567 Msa1159470:intron 45.0%
GCGTTGCTTACTTCAAGCAT+TGG + chr7_4:49090579-49090598 None:intergenic 45.0%
! AAATCCATTTGATGGGCAGG+AGG - chr7_4:49091027-49091046 Msa1159470:intron 45.0%
AACTTAGAAGGGCTGGATCA+AGG + chr7_4:49091113-49091132 None:intergenic 45.0%
GGGATCCTGATCCTTGTATA+TGG + chr7_4:49091495-49091514 None:intergenic 45.0%
! CTAATTCGTTTGTTGGGCTG+GGG + chr7_4:49091575-49091594 None:intergenic 45.0%
! CACTAATTCGTTTGTTGGGC+TGG + chr7_4:49091577-49091596 None:intergenic 45.0%
CAGCCCAACAAACGAATTAG+TGG - chr7_4:49091575-49091594 Msa1159470:intron 45.0%
! TCCTACCAGTCTCTGGTTTA+AGG - chr7_4:49091670-49091689 Msa1159470:intron 45.0%
! CCTACCAGTCTCTGGTTTAA+GGG - chr7_4:49091671-49091690 Msa1159470:intron 45.0%
TTCTATTCACGATGAGCAGC+AGG + chr7_4:49091718-49091737 None:intergenic 45.0%
!!! GCTACTCGTGTCGCTTATTT+TGG - chr7_4:49091963-49091982 Msa1159470:intron 45.0%
TGTAGGCTGTATGGAGTTAG+GGG - chr7_4:49092298-49092317 Msa1159470:five_prime_UTR 45.0%
!! AAAAAAAAATTTCTTATATT+TGG - chr7_4:49087148-49087167 Msa1159470:intron 5.0%
!! AAAAAAAATTTCTTATATTT+GGG - chr7_4:49087149-49087168 Msa1159470:intron 5.0%
GGGAGTGAAGAGAATGGGAA+AGG + chr7_4:49086307-49086326 None:intergenic 50.0%
GGTGAGGGAGTGAAGAGAAT+GGG + chr7_4:49086312-49086331 None:intergenic 50.0%
CATTCTCTTCACTCCCTCAC+CGG - chr7_4:49086311-49086330 Msa1159470:three_prime_UTR 50.0%
ATTCTCTTCACTCCCTCACC+GGG - chr7_4:49086312-49086331 Msa1159470:three_prime_UTR 50.0%
TGCCCTAGGTGTTCGTACTT+AGG + chr7_4:49086892-49086911 None:intergenic 50.0%
ACGAACACCTAGGGCATGTT+TGG - chr7_4:49086896-49086915 Msa1159470:intron 50.0%
CGTCAATCCAAACATGCCCT+AGG + chr7_4:49086906-49086925 None:intergenic 50.0%
GGTGTGTATGGGAATGTGTG+CGG + chr7_4:49087364-49087383 None:intergenic 50.0%
GTACTCTGACGAGGAACAAG+AGG - chr7_4:49087714-49087733 Msa1159470:intron 50.0%
! GATCCAGAAGGTGCACTTTC+TGG - chr7_4:49088199-49088218 Msa1159470:CDS 50.0%
!!! TGCACTTTCTGGTTTTGCCG+AGG - chr7_4:49088210-49088229 Msa1159470:CDS 50.0%
! TTTTGCCGAGGTAGTGCGAA+TGG - chr7_4:49088222-49088241 Msa1159470:CDS 50.0%
!! GGTTCGGCTAGCCAGAATTT+TGG - chr7_4:49088788-49088807 Msa1159470:intron 50.0%
CCTGCAGAAGGCCAAAATTC+TGG + chr7_4:49088802-49088821 None:intergenic 50.0%
!! CCAGAATTTTGGCCTTCTGC+AGG - chr7_4:49088799-49088818 Msa1159470:intron 50.0%
CAAGGGCTCTCAGAGTTGTT+TGG + chr7_4:49088832-49088851 None:intergenic 50.0%
! AACTCTGAGAGCCCTTGAAG+AGG - chr7_4:49088835-49088854 Msa1159470:intron 50.0%
AGTCAGCAATTCCCCATCCA+AGG - chr7_4:49090428-49090447 Msa1159470:intron 50.0%
! GCATTTTCCCCCCACATTCA+TGG + chr7_4:49090468-49090487 None:intergenic 50.0%
ATGTGGGGGGAAAATGCACA+TGG - chr7_4:49090471-49090490 Msa1159470:CDS 50.0%
TTAGCCTCCTGCCCATCAAA+TGG + chr7_4:49091034-49091053 None:intergenic 50.0%
GAAGGGCTGGATCAAGGAAT+GGG + chr7_4:49091107-49091126 None:intergenic 50.0%
AGAAGGGCTGGATCAAGGAA+TGG + chr7_4:49091108-49091127 None:intergenic 50.0%
GATCCAGCCCTTCTAAGTTG+AGG - chr7_4:49091114-49091133 Msa1159470:intron 50.0%
CATCCTCAACTTAGAAGGGC+TGG + chr7_4:49091120-49091139 None:intergenic 50.0%
! CAGCCCTTCTAAGTTGAGGA+TGG - chr7_4:49091118-49091137 Msa1159470:intron 50.0%
CAGCTATTCCTACCAGTCTC+TGG - chr7_4:49091663-49091682 Msa1159470:intron 50.0%
CCCTTAAACCAGAGACTGGT+AGG + chr7_4:49091674-49091693 None:intergenic 50.0%
AGCTGCTCAACATCATGCTC+AGG + chr7_4:49091946-49091965 None:intergenic 50.0%
! TGATCAAGTGAACCGGCTCT+TGG - chr7_4:49092008-49092027 Msa1159470:intron 50.0%
! TATCAGAGCGTTCCAAGAGC+CGG + chr7_4:49092023-49092042 None:intergenic 50.0%
GTAGGCTGTATGGAGTTAGG+GGG - chr7_4:49092299-49092318 Msa1159470:five_prime_UTR 50.0%
CCTAAGCGCACACACATCAC+CGG - chr7_4:49086260-49086279 Msa1159470:three_prime_UTR 55.0%
CGGTGAGGGAGTGAAGAGAA+TGG + chr7_4:49086313-49086332 None:intergenic 55.0%
! TCGGATAGCGGTCAAGAGTG+TGG - chr7_4:49087313-49087332 Msa1159470:intron 55.0%
TGACGAGGAACAAGAGGAGC+AGG - chr7_4:49087720-49087739 Msa1159470:intron 55.0%
GGCTCTTGGAACGCTCTGAT+AGG - chr7_4:49092022-49092041 Msa1159470:intron 55.0%
CCGGTGATGTGTGTGCGCTT+AGG + chr7_4:49086263-49086282 None:intergenic 60.0%
! CGTTTGTTGGGCTGGGGCAA+GGG + chr7_4:49091569-49091588 None:intergenic 60.0%
! TCGTTTGTTGGGCTGGGGCA+AGG + chr7_4:49091570-49091589 None:intergenic 60.0%
! TGCACATGGCAGAGCGCCAG+TGG - chr7_4:49090485-49090504 Msa1159470:CDS 65.0%
! GCACATGGCAGAGCGCCAGT+GGG - chr7_4:49090486-49090505 Msa1159470:CDS 65.0%
CTGTAGCTGCGTCAGCCCAC+TGG + chr7_4:49090504-49090523 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 49086249 49092461 49086249 ID=Msa1159470;Name=Msa1159470
chr7_4 mRNA 49086249 49092461 49086249 ID=Msa1159470-mRNA-1;Parent=Msa1159470;Name=Msa1159470-mRNA-1;_AED=0.07;_eAED=0.07;_QI=164|1|1|1|1|1|12|237|439
chr7_4 exon 49086249 49086576 49086249 ID=Msa1159470-mRNA-1:exon:13486;Parent=Msa1159470-mRNA-1
chr7_4 exon 49086667 49086779 49086667 ID=Msa1159470-mRNA-1:exon:13485;Parent=Msa1159470-mRNA-1
chr7_4 exon 49087183 49087317 49087183 ID=Msa1159470-mRNA-1:exon:13484;Parent=Msa1159470-mRNA-1
chr7_4 exon 49087432 49087522 49087432 ID=Msa1159470-mRNA-1:exon:13483;Parent=Msa1159470-mRNA-1
chr7_4 exon 49087654 49087722 49087654 ID=Msa1159470-mRNA-1:exon:13482;Parent=Msa1159470-mRNA-1
chr7_4 exon 49088123 49088310 49088123 ID=Msa1159470-mRNA-1:exon:13481;Parent=Msa1159470-mRNA-1
chr7_4 exon 49089413 49089547 49089413 ID=Msa1159470-mRNA-1:exon:13480;Parent=Msa1159470-mRNA-1
chr7_4 exon 49089682 49089756 49089682 ID=Msa1159470-mRNA-1:exon:13479;Parent=Msa1159470-mRNA-1
chr7_4 exon 49089842 49090082 49089842 ID=Msa1159470-mRNA-1:exon:13478;Parent=Msa1159470-mRNA-1
chr7_4 exon 49090447 49090525 49090447 ID=Msa1159470-mRNA-1:exon:13477;Parent=Msa1159470-mRNA-1
chr7_4 exon 49090932 49091024 49090932 ID=Msa1159470-mRNA-1:exon:13476;Parent=Msa1159470-mRNA-1
chr7_4 exon 49092288 49092461 49092288 ID=Msa1159470-mRNA-1:exon:13475;Parent=Msa1159470-mRNA-1
chr7_4 five_prime_UTR 49092298 49092461 49092298 ID=Msa1159470-mRNA-1:five_prime_utr;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49092288 49092297 49092288 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49090932 49091024 49090932 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49090447 49090525 49090447 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49089842 49090082 49089842 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49089682 49089756 49089682 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49089413 49089547 49089413 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49088123 49088310 49088123 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49087654 49087722 49087654 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49087432 49087522 49087432 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49087183 49087317 49087183 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49086667 49086779 49086667 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 CDS 49086486 49086576 49086486 ID=Msa1159470-mRNA-1:cds;Parent=Msa1159470-mRNA-1
chr7_4 three_prime_UTR 49086249 49086485 49086249 ID=Msa1159470-mRNA-1:three_prime_utr;Parent=Msa1159470-mRNA-1
Gene Sequence

>Msa1159470

ATGGCTTCCGATGCTGATATGGAGGACTATGGATTTGAGTACTCTGACGAGGAACAAGAGGAGCAGGATGTTGACATTGAGAATCAATATTACAATTCAAAAGGTTTGGTTGAAACTGATCCAGAAGGTGCACTTTCTGGTTTTGCCGAGGTAGTGCGAATGGAACAAGACAAGGCAGAATGGGGATTTAAAGCTCTGAAGCAAACTGTCAAGCTTTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACAGGGAGATGTTGACATACATCAAATCAGCAGTGACCCGTAACTATAGTGAAAAGTGCATAAACAGCATTATGGACTATGTCTCTGGTTCGGCTAGCCAGAATTTTGGCCTTCTGCAGGAATTCTACCAAACAACTCTGAGAGCCCTTGAAGAGGCAAAAAATGAGAGATTGTGGTTCAAGACAAATTTGAAGCTTTGTAAGATTTTCTTTGACATTGGGGAATATGGTCGGATGAGTAAGATCCTTAAGGAACTTCACAGATCTTGTCAACGTGAGGATGGCACAGATGACCATAAGAAAGGAACTCAACTTTTGGAGGTTTATGCAATTGAAATTCAAATGTACACAGAGACCAAGAACAACAAAAAACTCAAGCAACTTTACCAGAAAGCACTTACTATCAAGTCAGCAATTCCCCATCCAAGGATAATGGGGATAATCCATGAATGTGGGGGGAAAATGCACATGGCAGAGCGCCAGTGGGCTGACGCAGCTACAGATTTCTTTGAAGCTTTTAAGAATTATGATGAAGCTGGGAATCAGAGGCGTATCCAATGCTTGAAATACCTTGTTCTTGCAAACATGTTGATGGAATCTGAAGTAAATCCATTTGATGGGCAGGAGGCTAAGCCATACAAGAATGACCCTGAAATTTTGGCTATGACAAATCTGATAGCAGCCTATCAACGAAATGAAATATTGGAATTTGAGAAAATCCTGAAGAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAATTACATTGAGGATTTGCTAAAGAATATCAGAACACAGGTCTTGCTGAAACTCATCAAACCATATACAAGGATCAGGATCCCATTTATATCTAAGGAACTTAATGTGCCTGAGCATGATGTTGAGCAGCTACTCGTGTCGCTTATTTTGGATAACAGAATTCAAGGACACATTGATCAAGTGAACCGGCTCTTGGAACGCTCTGATAGGTCAAAAGGAATGAAGAAGTATACAGCTGTGGATAAATGGAACACACAACTTAAATCTCTTTATCAAACCATCAACAACAGAGTTGGTTAA

Protein sequence

>Msa1159470

MASDADMEDYGFEYSDEEQEEQDVDIENQYYNSKGLVETDPEGALSGFAEVVRMEQDKAEWGFKALKQTVKLYYRLGRYKEMMEAYREMLTYIKSAVTRNYSEKCINSIMDYVSGSASQNFGLLQEFYQTTLRALEEAKNERLWFKTNLKLCKIFFDIGEYGRMSKILKELHRSCQREDGTDDHKKGTQLLEVYAIEIQMYTETKNNKKLKQLYQKALTIKSAIPHPRIMGIIHECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISKELNVPEHDVEQLLVSLILDNRIQGHIDQVNRLLERSDRSKGMKKYTAVDKWNTQLKSLYQTINNRVG*