AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0153910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153910 MtrunA17_Chr1g0164031 68.571 210 28 2 15 186 1 210 6.90e-87 259
Msa0153910 MtrunA17_Chr1g0164131 66.816 223 35 3 2 185 204 426 1.30e-84 260
Msa0153910 MtrunA17_Chr1g0163811 55.251 219 57 3 8 185 2 220 8.82e-58 183
Msa0153910 MtrunA17_Chr1g0164951 64.773 88 29 2 99 185 14 100 2.54e-29 105
Msa0153910 MtrunA17_Chr6g0473331 24.880 209 134 7 4 205 285 477 1.00e-14 72.0
Msa0153910 MtrunA17_Chr6g0478011 28.877 187 120 5 4 185 66 244 2.16e-14 70.5
Msa0153910 MtrunA17_Chr1g0159521 27.168 173 119 3 15 185 266 433 2.24e-13 68.2
Msa0153910 MtrunA17_Chr6g0479541 25.654 191 129 4 11 199 352 531 3.54e-13 67.8
Msa0153910 MtrunA17_Chr6g0478291 28.877 187 120 6 4 185 254 432 9.36e-13 66.2
Msa0153910 MtrunA17_Chr4g0037841 26.994 163 113 4 3 162 179 338 2.34e-12 65.1
Msa0153910 MtrunA17_Chr6g0482921 28.409 176 113 5 15 185 1 168 7.25e-12 63.2
Msa0153910 MtrunA17_Chr5g0395201 27.000 200 131 5 3 199 630 817 1.38e-11 63.2
Msa0153910 MtrunA17_Chr6g0482971 26.136 176 117 5 15 185 255 422 2.58e-11 62.0
Msa0153910 MtrunA17_Chr4g0060341 26.380 163 114 4 3 162 179 338 5.45e-11 61.2
Msa0153910 MtrunA17_Chr6g0472611 23.370 184 134 4 4 185 253 431 8.81e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153910 AT1G66345.1 35.000 200 86 4 6 167 216 409 5.63e-23 96.3
Msa0153910 AT1G12700.1 25.789 190 128 5 4 188 313 494 2.68e-12 65.5
Msa0153910 AT1G12700.3 25.789 190 128 5 4 188 329 510 3.05e-12 65.5
Msa0153910 AT1G12700.2 25.789 190 128 5 4 188 329 510 3.05e-12 65.5
Msa0153910 AT1G62670.2 25.521 192 128 6 1 185 301 484 1.50e-11 63.2
Msa0153910 AT1G62670.1 25.521 192 128 6 1 185 301 484 1.50e-11 63.2
Msa0153910 AT1G62680.1 25.000 192 129 6 1 185 235 418 4.19e-11 62.0
Msa0153910 AT1G62680.2 25.000 192 129 6 1 185 235 418 4.19e-11 62.0
Msa0153910 AT1G63400.1 25.521 192 128 6 1 185 305 488 4.81e-11 61.6
Msa0153910 AT1G09820.1 24.309 181 131 4 3 180 202 379 5.12e-11 61.6
Msa0153910 AT5G55840.2 24.294 177 120 6 7 175 216 386 8.19e-11 61.2
Msa0153910 AT5G55840.1 24.294 177 120 6 7 175 216 386 8.19e-11 61.2
Msa0153910 AT5G55840.3 24.294 177 120 6 7 175 176 346 8.87e-11 61.2

Find 52 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACTGTTTGGGAGGTTTA+TGG 0.189347 1_4:-17936720 Msa0153910:CDS
CTGAGTGCTGGGTCTGTTCT+TGG 0.230869 1_4:-17936172 Msa0153910:CDS
ACCCTAATGTTGCTACTTCC+AGG 0.279802 1_4:-17936674 Msa0153910:CDS
ACAAAGGAATGTTGCTGCTT+TGG 0.290301 1_4:-17936619 Msa0153910:CDS
TGATTGATGTTCTTTGTAAA+GGG 0.322972 1_4:-17936647 Msa0153910:CDS
ATCGTTGGATACGCGAATTC+GGG 0.323774 1_4:-17936232 Msa0153910:CDS
AAATGGAAAGGAAGAGGTTA+AGG 0.338732 1_4:-17936282 Msa0153910:CDS
GTTCTTGGTTGTTTGTTGTC+TGG 0.346211 1_4:-17936157 Msa0153910:CDS
TCTTCACCTTCGCAATGAAA+TGG 0.354318 1_4:-17935769 Msa0153910:CDS
TATCGTTGGATACGCGAATT+CGG 0.360381 1_4:-17936233 Msa0153910:CDS
TCCTGGAAGTAGCAACATTA+GGG 0.375459 1_4:+17936673 None:intergenic
ATCCTGGAAGTAGCAACATT+AGG 0.390279 1_4:+17936672 None:intergenic
ATGATTGATGTTCTTTGTAA+AGG 0.400878 1_4:-17936648 Msa0153910:CDS
ATACGCGAATTCGGGTAGAT+TGG 0.403618 1_4:-17936224 Msa0153910:CDS
GCGAAATTCACATTCGCCTT+CGG 0.404406 1_4:-17936580 Msa0153910:CDS
TAATCGATTTGAAACTGTTT+GGG 0.410254 1_4:-17936730 Msa0153910:CDS
GAATAATTTGATTGGTGATT+CGG 0.431287 1_4:-17936460 Msa0153910:CDS
TCGGAAAAGGTGGGAGAAGA+AGG 0.435449 1_4:-17936525 Msa0153910:CDS
TCGCAATGAAATGGGCTCAT+TGG 0.445606 1_4:-17935760 Msa0153910:CDS
GTAATCGATTTGAAACTGTT+TGG 0.446185 1_4:-17936731 Msa0153910:CDS
TGGTTGTTTGTTGTCTGGTA+AGG 0.448767 1_4:-17936152 Msa0153910:CDS
CTTCACCTTCGCAATGAAAT+GGG 0.450197 1_4:-17935768 Msa0153910:CDS
ACTGAGAAGCTCTGTGAGAA+TGG 0.462296 1_4:-17936127 Msa0153910:CDS
TTCGAAGAAATGCTGAGTGC+TGG 0.470839 1_4:-17936184 Msa0153910:CDS
AAGAACATCAATCATAATCC+TGG 0.477516 1_4:+17936656 None:intergenic
CGGGTAGATTGGAACAGTGT+TGG 0.490766 1_4:-17936213 Msa0153910:CDS
CGGAAAAGGTGGGAGAAGAA+GGG 0.500437 1_4:-17936524 Msa0153910:CDS
GCTGCTTTGGATCAGATTGT+TGG 0.501923 1_4:-17936606 Msa0153910:CDS
TCGAAGAAATGCTGAGTGCT+GGG 0.503765 1_4:-17936183 Msa0153910:CDS
GACTTTGAGAATGTCGGAAA+AGG 0.506660 1_4:-17936538 Msa0153910:CDS
GGTTGGATTGATGAGGGAAA+TGG 0.509075 1_4:-17936299 Msa0153910:CDS
TTTGAGAATGTCGGAAAAGG+TGG 0.511929 1_4:-17936535 Msa0153910:CDS
TTTGTAAAGGGTTATTACAA+AGG 0.524362 1_4:-17936635 Msa0153910:CDS
TGAGAATGGAGAAGTGGAGA+AGG 0.524457 1_4:-17936113 Msa0153910:intron
GGACGGATTGAAGAGGCGGT+TGG 0.525456 1_4:-17936316 Msa0153910:CDS
AATGGAAAGGAAGAGGTTAA+GGG 0.531064 1_4:-17936281 Msa0153910:CDS
AAGAGGCGGTTGGATTGATG+AGG 0.531949 1_4:-17936306 Msa0153910:CDS
TTGTTGCAGAATAATTTGAT+TGG 0.534815 1_4:-17936468 Msa0153910:CDS
TGAGGGAAATGGAAAGGAAG+AGG 0.538258 1_4:-17936288 Msa0153910:CDS
GAGTATGACTTTGAGAATGT+CGG 0.551100 1_4:-17936544 Msa0153910:CDS
ACTTATGAATGTGTTATCGT+TGG 0.553017 1_4:-17936247 Msa0153910:CDS
AGAGGCGGTTGGATTGATGA+GGG 0.561629 1_4:-17936305 Msa0153910:CDS
ATGAGCCCATTTCATTGCGA+AGG 0.566850 1_4:+17935763 None:intergenic
GCTCTGTGAGAATGGAGAAG+TGG 0.572425 1_4:-17936119 Msa0153910:CDS
GCAGGAGAGAAATGACGATA+GGG 0.581553 1_4:-17935793 Msa0153910:intron
TCGATTTGAAACTGTTTGGG+AGG 0.582784 1_4:-17936727 Msa0153910:CDS
GATTGATGAGGGAAATGGAA+AGG 0.587569 1_4:-17936294 Msa0153910:CDS
TTGAGAATGTCGGAAAAGGT+GGG 0.614514 1_4:-17936534 Msa0153910:CDS
TGAGACGGGACGGATTGAAG+AGG 0.615733 1_4:-17936323 Msa0153910:intron
TGCAGGAGAGAAATGACGAT+AGG 0.623392 1_4:-17935794 Msa0153910:intron
GACGGGACGGATTGAAGAGG+CGG 0.629942 1_4:-17936320 Msa0153910:CDS
CTCAAATTAACAATAACCGA+AGG 0.641699 1_4:+17936564 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAGGATTATGAAAGTT+CGG - chr1_4:17936612-17936631 Msa0153910:CDS 20.0%
!! ATTTAAGGATTATGAAAGTT+CGG - chr1_4:17936612-17936631 Msa0153910:CDS 20.0%
!!! TAATCGATTTGAAACTGTTT+GGG - chr1_4:17935748-17935767 Msa0153910:CDS 25.0%
! ATGATTGATGTTCTTTGTAA+AGG - chr1_4:17935830-17935849 Msa0153910:intron 25.0%
! TGATTGATGTTCTTTGTAAA+GGG - chr1_4:17935831-17935850 Msa0153910:intron 25.0%
! TTTGTAAAGGGTTATTACAA+AGG - chr1_4:17935843-17935862 Msa0153910:intron 25.0%
! TTGTTGCAGAATAATTTGAT+TGG - chr1_4:17936010-17936029 Msa0153910:intron 25.0%
!! GAATAATTTGATTGGTGATT+CGG - chr1_4:17936018-17936037 Msa0153910:intron 25.0%
! TGATTGTTCATGTTAAAGTT+AGG - chr1_4:17936053-17936072 Msa0153910:intron 25.0%
! TTCATGTTAAAGTTAGGTTA+GGG - chr1_4:17936059-17936078 Msa0153910:intron 25.0%
!!! ATTCGTTTATTTTTGTGAGA+CGG - chr1_4:17936140-17936159 Msa0153910:CDS 25.0%
! ACTTATTCACATTTGATACA+TGG - chr1_4:17936443-17936462 Msa0153910:CDS 25.0%
!!! TAATCGATTTGAAACTGTTT+GGG - chr1_4:17935748-17935767 Msa0153910:CDS 25.0%
! ATGATTGATGTTCTTTGTAA+AGG - chr1_4:17935830-17935849 Msa0153910:intron 25.0%
! TGATTGATGTTCTTTGTAAA+GGG - chr1_4:17935831-17935850 Msa0153910:intron 25.0%
! TTTGTAAAGGGTTATTACAA+AGG - chr1_4:17935843-17935862 Msa0153910:intron 25.0%
! TTGTTGCAGAATAATTTGAT+TGG - chr1_4:17936010-17936029 Msa0153910:intron 25.0%
!! GAATAATTTGATTGGTGATT+CGG - chr1_4:17936018-17936037 Msa0153910:intron 25.0%
! TGATTGTTCATGTTAAAGTT+AGG - chr1_4:17936053-17936072 Msa0153910:intron 25.0%
! TTCATGTTAAAGTTAGGTTA+GGG - chr1_4:17936059-17936078 Msa0153910:intron 25.0%
!!! ATTCGTTTATTTTTGTGAGA+CGG - chr1_4:17936140-17936159 Msa0153910:CDS 25.0%
! ACTTATTCACATTTGATACA+TGG - chr1_4:17936443-17936462 Msa0153910:CDS 25.0%
!! GTAATCGATTTGAAACTGTT+TGG - chr1_4:17935747-17935766 Msa0153910:CDS 30.0%
AAGAACATCAATCATAATCC+TGG + chr1_4:17935825-17935844 None:intergenic 30.0%
CTCAAATTAACAATAACCGA+AGG + chr1_4:17935917-17935936 None:intergenic 30.0%
GTTCATGTTAAAGTTAGGTT+AGG - chr1_4:17936058-17936077 Msa0153910:intron 30.0%
TCATGTTAAAGTTAGGTTAG+GGG - chr1_4:17936060-17936079 Msa0153910:intron 30.0%
!!! TTCGTTTATTTTTGTGAGAC+GGG - chr1_4:17936141-17936160 Msa0153910:CDS 30.0%
ACTTATGAATGTGTTATCGT+TGG - chr1_4:17936231-17936250 Msa0153910:CDS 30.0%
ATCCTTTATCTAACAACACA+GGG + chr1_4:17936405-17936424 None:intergenic 30.0%
AATCCTTTATCTAACAACAC+AGG + chr1_4:17936406-17936425 None:intergenic 30.0%
!! GTAATCGATTTGAAACTGTT+TGG - chr1_4:17935747-17935766 Msa0153910:CDS 30.0%
AAGAACATCAATCATAATCC+TGG + chr1_4:17935825-17935844 None:intergenic 30.0%
CTCAAATTAACAATAACCGA+AGG + chr1_4:17935917-17935936 None:intergenic 30.0%
GTTCATGTTAAAGTTAGGTT+AGG - chr1_4:17936058-17936077 Msa0153910:intron 30.0%
TCATGTTAAAGTTAGGTTAG+GGG - chr1_4:17936060-17936079 Msa0153910:intron 30.0%
!!! TTCGTTTATTTTTGTGAGAC+GGG - chr1_4:17936141-17936160 Msa0153910:CDS 30.0%
ACTTATGAATGTGTTATCGT+TGG - chr1_4:17936231-17936250 Msa0153910:CDS 30.0%
ATCCTTTATCTAACAACACA+GGG + chr1_4:17936405-17936424 None:intergenic 30.0%
AATCCTTTATCTAACAACAC+AGG + chr1_4:17936406-17936425 None:intergenic 30.0%
! GAGTATGACTTTGAGAATGT+CGG - chr1_4:17935934-17935953 Msa0153910:intron 35.0%
TAAAGTTAGGTTAGGGGATT+TGG - chr1_4:17936066-17936085 Msa0153910:intron 35.0%
! AGGGGATTTGGATTTTTCTT+TGG - chr1_4:17936078-17936097 Msa0153910:intron 35.0%
TTTGGCGATGTATAATGAGA+TGG - chr1_4:17936096-17936115 Msa0153910:intron 35.0%
!!! TTTATTTTTGTGAGACGGGA+CGG - chr1_4:17936145-17936164 Msa0153910:CDS 35.0%
AAATGGAAAGGAAGAGGTTA+AGG - chr1_4:17936196-17936215 Msa0153910:CDS 35.0%
AATGGAAAGGAAGAGGTTAA+GGG - chr1_4:17936197-17936216 Msa0153910:CDS 35.0%
CATGGTTAATTATGCGAGAA+AGG - chr1_4:17936461-17936480 Msa0153910:CDS 35.0%
ACAGTATAAGTCTATGTGTC+TGG - chr1_4:17936521-17936540 Msa0153910:CDS 35.0%
ATAAGTCTATGTGTCTGGAT+TGG - chr1_4:17936526-17936545 Msa0153910:CDS 35.0%
!! AAGCTGCAGAGAAGTATTTA+AGG - chr1_4:17936597-17936616 Msa0153910:CDS 35.0%
GTCTCATATATAGCCACATT+TGG + chr1_4:17936647-17936666 None:intergenic 35.0%
ATATATGAGACATTGATCGC+TGG - chr1_4:17936656-17936675 Msa0153910:CDS 35.0%
! GAGTATGACTTTGAGAATGT+CGG - chr1_4:17935934-17935953 Msa0153910:intron 35.0%
TAAAGTTAGGTTAGGGGATT+TGG - chr1_4:17936066-17936085 Msa0153910:intron 35.0%
! AGGGGATTTGGATTTTTCTT+TGG - chr1_4:17936078-17936097 Msa0153910:intron 35.0%
TTTGGCGATGTATAATGAGA+TGG - chr1_4:17936096-17936115 Msa0153910:intron 35.0%
!!! TTTATTTTTGTGAGACGGGA+CGG - chr1_4:17936145-17936164 Msa0153910:CDS 35.0%
AAATGGAAAGGAAGAGGTTA+AGG - chr1_4:17936196-17936215 Msa0153910:CDS 35.0%
AATGGAAAGGAAGAGGTTAA+GGG - chr1_4:17936197-17936216 Msa0153910:CDS 35.0%
CATGGTTAATTATGCGAGAA+AGG - chr1_4:17936461-17936480 Msa0153910:CDS 35.0%
ACAGTATAAGTCTATGTGTC+TGG - chr1_4:17936521-17936540 Msa0153910:CDS 35.0%
ATAAGTCTATGTGTCTGGAT+TGG - chr1_4:17936526-17936545 Msa0153910:CDS 35.0%
!! AAGCTGCAGAGAAGTATTTA+AGG - chr1_4:17936597-17936616 Msa0153910:CDS 35.0%
GTCTCATATATAGCCACATT+TGG + chr1_4:17936647-17936666 None:intergenic 35.0%
ATATATGAGACATTGATCGC+TGG - chr1_4:17936656-17936675 Msa0153910:CDS 35.0%
! TCGATTTGAAACTGTTTGGG+AGG - chr1_4:17935751-17935770 Msa0153910:CDS 40.0%
GAAACTGTTTGGGAGGTTTA+TGG - chr1_4:17935758-17935777 Msa0153910:CDS 40.0%
TCCTGGAAGTAGCAACATTA+GGG + chr1_4:17935808-17935827 None:intergenic 40.0%
ATCCTGGAAGTAGCAACATT+AGG + chr1_4:17935809-17935828 None:intergenic 40.0%
! ACAAAGGAATGTTGCTGCTT+TGG - chr1_4:17935859-17935878 Msa0153910:intron 40.0%
! GACTTTGAGAATGTCGGAAA+AGG - chr1_4:17935940-17935959 Msa0153910:intron 40.0%
TTTGAGAATGTCGGAAAAGG+TGG - chr1_4:17935943-17935962 Msa0153910:intron 40.0%
TTGAGAATGTCGGAAAAGGT+GGG - chr1_4:17935944-17935963 Msa0153910:intron 40.0%
GATTGATGAGGGAAATGGAA+AGG - chr1_4:17936184-17936203 Msa0153910:CDS 40.0%
TATCGTTGGATACGCGAATT+CGG - chr1_4:17936245-17936264 Msa0153910:CDS 40.0%
!! GTTCTTGGTTGTTTGTTGTC+TGG - chr1_4:17936321-17936340 Msa0153910:CDS 40.0%
!! TGGTTGTTTGTTGTCTGGTA+AGG - chr1_4:17936326-17936345 Msa0153910:intron 40.0%
! TGCCCTGTGTTGTTAGATAA+AGG - chr1_4:17936400-17936419 Msa0153910:intron 40.0%
!! ATTCAGTGTTTCTGCCGTTT+TGG - chr1_4:17936566-17936585 Msa0153910:CDS 40.0%
CAGCTTCAACCTTTCCAAAA+CGG + chr1_4:17936583-17936602 None:intergenic 40.0%
TCTTCACCTTCGCAATGAAA+TGG - chr1_4:17936709-17936728 Msa0153910:CDS 40.0%
CTTCACCTTCGCAATGAAAT+GGG - chr1_4:17936710-17936729 Msa0153910:CDS 40.0%
! TCGATTTGAAACTGTTTGGG+AGG - chr1_4:17935751-17935770 Msa0153910:CDS 40.0%
GAAACTGTTTGGGAGGTTTA+TGG - chr1_4:17935758-17935777 Msa0153910:CDS 40.0%
TCCTGGAAGTAGCAACATTA+GGG + chr1_4:17935808-17935827 None:intergenic 40.0%
ATCCTGGAAGTAGCAACATT+AGG + chr1_4:17935809-17935828 None:intergenic 40.0%
! ACAAAGGAATGTTGCTGCTT+TGG - chr1_4:17935859-17935878 Msa0153910:intron 40.0%
! GACTTTGAGAATGTCGGAAA+AGG - chr1_4:17935940-17935959 Msa0153910:intron 40.0%
TTTGAGAATGTCGGAAAAGG+TGG - chr1_4:17935943-17935962 Msa0153910:intron 40.0%
TTGAGAATGTCGGAAAAGGT+GGG - chr1_4:17935944-17935963 Msa0153910:intron 40.0%
GATTGATGAGGGAAATGGAA+AGG - chr1_4:17936184-17936203 Msa0153910:CDS 40.0%
TATCGTTGGATACGCGAATT+CGG - chr1_4:17936245-17936264 Msa0153910:CDS 40.0%
!! GTTCTTGGTTGTTTGTTGTC+TGG - chr1_4:17936321-17936340 Msa0153910:CDS 40.0%
!! TGGTTGTTTGTTGTCTGGTA+AGG - chr1_4:17936326-17936345 Msa0153910:intron 40.0%
! TGCCCTGTGTTGTTAGATAA+AGG - chr1_4:17936400-17936419 Msa0153910:intron 40.0%
!! ATTCAGTGTTTCTGCCGTTT+TGG - chr1_4:17936566-17936585 Msa0153910:CDS 40.0%
CAGCTTCAACCTTTCCAAAA+CGG + chr1_4:17936583-17936602 None:intergenic 40.0%
TCTTCACCTTCGCAATGAAA+TGG - chr1_4:17936709-17936728 Msa0153910:CDS 40.0%
CTTCACCTTCGCAATGAAAT+GGG - chr1_4:17936710-17936729 Msa0153910:CDS 40.0%
! ACCCTAATGTTGCTACTTCC+AGG - chr1_4:17935804-17935823 Msa0153910:intron 45.0%
! GCTGCTTTGGATCAGATTGT+TGG - chr1_4:17935872-17935891 Msa0153910:intron 45.0%
GCGAAATTCACATTCGCCTT+CGG - chr1_4:17935898-17935917 Msa0153910:intron 45.0%
GGTTGGATTGATGAGGGAAA+TGG - chr1_4:17936179-17936198 Msa0153910:CDS 45.0%
TGAGGGAAATGGAAAGGAAG+AGG - chr1_4:17936190-17936209 Msa0153910:CDS 45.0%
ATCGTTGGATACGCGAATTC+GGG - chr1_4:17936246-17936265 Msa0153910:CDS 45.0%
ATACGCGAATTCGGGTAGAT+TGG - chr1_4:17936254-17936273 Msa0153910:CDS 45.0%
TTCGAAGAAATGCTGAGTGC+TGG - chr1_4:17936294-17936313 Msa0153910:CDS 45.0%
TCGAAGAAATGCTGAGTGCT+GGG - chr1_4:17936295-17936314 Msa0153910:CDS 45.0%
ACTGAGAAGCTCTGTGAGAA+TGG - chr1_4:17936351-17936370 Msa0153910:intron 45.0%
TGAGAATGGAGAAGTGGAGA+AGG - chr1_4:17936365-17936384 Msa0153910:intron 45.0%
!!! GTGTTTCTGCCGTTTTGGAA+AGG - chr1_4:17936571-17936590 Msa0153910:CDS 45.0%
TGCAGGAGAGAAATGACGAT+AGG - chr1_4:17936684-17936703 Msa0153910:CDS 45.0%
GCAGGAGAGAAATGACGATA+GGG - chr1_4:17936685-17936704 Msa0153910:CDS 45.0%
ATGAGCCCATTTCATTGCGA+AGG + chr1_4:17936718-17936737 None:intergenic 45.0%
! TCGCAATGAAATGGGCTCAT+TGG - chr1_4:17936718-17936737 Msa0153910:CDS 45.0%
! ACCCTAATGTTGCTACTTCC+AGG - chr1_4:17935804-17935823 Msa0153910:intron 45.0%
! GCTGCTTTGGATCAGATTGT+TGG - chr1_4:17935872-17935891 Msa0153910:intron 45.0%
GCGAAATTCACATTCGCCTT+CGG - chr1_4:17935898-17935917 Msa0153910:intron 45.0%
GGTTGGATTGATGAGGGAAA+TGG - chr1_4:17936179-17936198 Msa0153910:CDS 45.0%
TGAGGGAAATGGAAAGGAAG+AGG - chr1_4:17936190-17936209 Msa0153910:CDS 45.0%
ATCGTTGGATACGCGAATTC+GGG - chr1_4:17936246-17936265 Msa0153910:CDS 45.0%
ATACGCGAATTCGGGTAGAT+TGG - chr1_4:17936254-17936273 Msa0153910:CDS 45.0%
TTCGAAGAAATGCTGAGTGC+TGG - chr1_4:17936294-17936313 Msa0153910:CDS 45.0%
TCGAAGAAATGCTGAGTGCT+GGG - chr1_4:17936295-17936314 Msa0153910:CDS 45.0%
ACTGAGAAGCTCTGTGAGAA+TGG - chr1_4:17936351-17936370 Msa0153910:intron 45.0%
TGAGAATGGAGAAGTGGAGA+AGG - chr1_4:17936365-17936384 Msa0153910:intron 45.0%
!!! GTGTTTCTGCCGTTTTGGAA+AGG - chr1_4:17936571-17936590 Msa0153910:CDS 45.0%
TGCAGGAGAGAAATGACGAT+AGG - chr1_4:17936684-17936703 Msa0153910:CDS 45.0%
GCAGGAGAGAAATGACGATA+GGG - chr1_4:17936685-17936704 Msa0153910:CDS 45.0%
ATGAGCCCATTTCATTGCGA+AGG + chr1_4:17936718-17936737 None:intergenic 45.0%
! TCGCAATGAAATGGGCTCAT+TGG - chr1_4:17936718-17936737 Msa0153910:CDS 45.0%
TCGGAAAAGGTGGGAGAAGA+AGG - chr1_4:17935953-17935972 Msa0153910:intron 50.0%
CGGAAAAGGTGGGAGAAGAA+GGG - chr1_4:17935954-17935973 Msa0153910:intron 50.0%
AAGAGGCGGTTGGATTGATG+AGG - chr1_4:17936172-17936191 Msa0153910:CDS 50.0%
AGAGGCGGTTGGATTGATGA+GGG - chr1_4:17936173-17936192 Msa0153910:CDS 50.0%
CGGGTAGATTGGAACAGTGT+TGG - chr1_4:17936265-17936284 Msa0153910:CDS 50.0%
GCTCTGTGAGAATGGAGAAG+TGG - chr1_4:17936359-17936378 Msa0153910:intron 50.0%
GCGAGAAAGGACGAAGTTCA+AGG - chr1_4:17936474-17936493 Msa0153910:CDS 50.0%
TCGGTCGTAGACTCCAAATG+TGG - chr1_4:17936631-17936650 Msa0153910:CDS 50.0%
ATTGATCGCTGGTCACATGC+AGG - chr1_4:17936667-17936686 Msa0153910:CDS 50.0%
TCGGAAAAGGTGGGAGAAGA+AGG - chr1_4:17935953-17935972 Msa0153910:intron 50.0%
CGGAAAAGGTGGGAGAAGAA+GGG - chr1_4:17935954-17935973 Msa0153910:intron 50.0%
AAGAGGCGGTTGGATTGATG+AGG - chr1_4:17936172-17936191 Msa0153910:CDS 50.0%
AGAGGCGGTTGGATTGATGA+GGG - chr1_4:17936173-17936192 Msa0153910:CDS 50.0%
CGGGTAGATTGGAACAGTGT+TGG - chr1_4:17936265-17936284 Msa0153910:CDS 50.0%
GCTCTGTGAGAATGGAGAAG+TGG - chr1_4:17936359-17936378 Msa0153910:intron 50.0%
GCGAGAAAGGACGAAGTTCA+AGG - chr1_4:17936474-17936493 Msa0153910:CDS 50.0%
TCGGTCGTAGACTCCAAATG+TGG - chr1_4:17936631-17936650 Msa0153910:CDS 50.0%
ATTGATCGCTGGTCACATGC+AGG - chr1_4:17936667-17936686 Msa0153910:CDS 50.0%
!! TGAGACGGGACGGATTGAAG+AGG - chr1_4:17936155-17936174 Msa0153910:CDS 55.0%
!! CTGAGTGCTGGGTCTGTTCT+TGG - chr1_4:17936306-17936325 Msa0153910:CDS 55.0%
!! TGAGACGGGACGGATTGAAG+AGG - chr1_4:17936155-17936174 Msa0153910:CDS 55.0%
!! CTGAGTGCTGGGTCTGTTCT+TGG - chr1_4:17936306-17936325 Msa0153910:CDS 55.0%
!! GACGGGACGGATTGAAGAGG+CGG - chr1_4:17936158-17936177 Msa0153910:CDS 60.0%
!! GGACGGATTGAAGAGGCGGT+TGG - chr1_4:17936162-17936181 Msa0153910:CDS 60.0%
!! GACGGGACGGATTGAAGAGG+CGG - chr1_4:17936158-17936177 Msa0153910:CDS 60.0%
!! GGACGGATTGAAGAGGCGGT+TGG - chr1_4:17936162-17936181 Msa0153910:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 17935743 17936757 17935743 ID=Msa0153910;Name=Msa0153910
chr1_4 mRNA 17935743 17936757 17935743 ID=Msa0153910-mRNA-1;Parent=Msa0153910;Name=Msa0153910-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|3|0|207
chr1_4 exon 17936431 17936757 17936431 ID=Msa0153910-mRNA-1:exon:6751;Parent=Msa0153910-mRNA-1
chr1_4 exon 17936114 17936341 17936114 ID=Msa0153910-mRNA-1:exon:6750;Parent=Msa0153910-mRNA-1
chr1_4 exon 17935743 17935811 17935743 ID=Msa0153910-mRNA-1:exon:6749;Parent=Msa0153910-mRNA-1
chr1_4 CDS 17936431 17936757 17936431 ID=Msa0153910-mRNA-1:cds;Parent=Msa0153910-mRNA-1
chr1_4 CDS 17936114 17936341 17936114 ID=Msa0153910-mRNA-1:cds;Parent=Msa0153910-mRNA-1
chr1_4 CDS 17935743 17935811 17935743 ID=Msa0153910-mRNA-1:cds;Parent=Msa0153910-mRNA-1
Gene Sequence

>Msa0153910

ATGTGTAATCGATTTGAAACTGTTTGGGAGGTTTATGGTTACATGATTTTGAAAAGAGTTTACCCTAATGTTGCTACTTCCAGGATTATGATTGATGTTCTTTGTAAAGGGTTATTACAAAGGAATGTTGCTGCTTTGGATCAGATTGTTGGAAAGCGAAATTCACATTCGCCTTCGGTTATTGTTAATTTGAGTATGACTTTGAGAATGTCGGAAAAGGTGGGAGAAGAAGGGAAGTTATTTAAGTTAGTTACATTGTTGAAGAGATTGTTGCAGAATAATTTGATTGGTGATTCGGTTGCTTATTCGTTGATTGTTCATGTTAAAACGGGACGGATTGAAGAGGCGGTTGGATTGATGAGGGAAATGGAAAGGAAGAGGTTAAGGGCTTATTGTGAGACTTATGAATGTGTTATCGTTGGATACGCGAATTCGGGTAGATTGGAACAGTGTTGGAGTGTTTTCGAAGAAATGCTGAGTGCTGGGTCTGTTCTTGGTTGTTTGTTGTCTGGTAAGGTGACTGAGAAGCTCTGTGAGAATGGAGAAGTGGAGAAGGAGAGAAATGACGATAGGGCTCTTCACCTTCGCAATGAAATGGGCTCATTGGAGTTGCAACATAGTTAG

Protein sequence

>Msa0153910

MCNRFETVWEVYGYMILKRVYPNVATSRIMIDVLCKGLLQRNVAALDQIVGKRNSHSPSVIVNLSMTLRMSEKVGEEGKLFKLVTLLKRLLQNNLIGDSVAYSLIVHVKTGRIEEAVGLMREMERKRLRAYCETYECVIVGYANSGRLEQCWSVFEEMLSAGSVLGCLLSGKVTEKLCENGEVEKERNDDRALHLRNEMGSLELQHS*