Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161220 | XP_003624887.1 | 98.160 | 489 | 9 | 0 | 1 | 489 | 1 | 489 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161220 | G7L4U1 | 98.160 | 489 | 9 | 0 | 1 | 489 | 1 | 489 | 0.0 | 962 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1071630 | Msa1161220 | 0.853413 | 2.429288e-61 | -8.615850e-47 |
| Msa1117520 | Msa1161220 | 0.904466 | 1.191391e-79 | -8.615850e-47 |
| Msa1161220 | Msa1426340 | 0.856291 | 3.553242e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161220 | MtrunA17_Chr7g0255441 | 98.160 | 489 | 9 | 0 | 1 | 489 | 1 | 489 | 0.0 | 962 |
| Msa1161220 | MtrunA17_Chr2g0297561 | 38.871 | 319 | 177 | 10 | 1 | 312 | 1 | 308 | 7.18e-55 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161220 | AT3G56590.1 | 53.145 | 318 | 137 | 6 | 1 | 310 | 1 | 314 | 1.34e-95 | 298 |
| Msa1161220 | AT3G56590.2 | 44.915 | 472 | 216 | 11 | 1 | 464 | 1 | 436 | 2.99e-95 | 297 |
| Msa1161220 | AT3G10810.1 | 46.488 | 484 | 219 | 12 | 1 | 473 | 1 | 455 | 2.98e-88 | 279 |
| Msa1161220 | AT3G10810.2 | 46.488 | 484 | 219 | 12 | 1 | 473 | 1 | 455 | 3.96e-88 | 279 |
| Msa1161220 | AT1G10790.1 | 34.395 | 314 | 198 | 6 | 18 | 326 | 21 | 331 | 7.20e-38 | 142 |
Find 150 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTAAGAGTGTTGTTAAA+TGG | 0.160532 | 7_4:-51463739 | Msa1161220:five_prime_UTR |
| ATTTGATTGTATTTGATAAA+TGG | 0.161202 | 7_4:+51461028 | None:intergenic |
| TTTGAAGTGTTGAAATTTAA+AGG | 0.171687 | 7_4:-51461131 | Msa1161220:CDS |
| GGCTTGAATAACACTGAATT+TGG | 0.215115 | 7_4:-51460436 | Msa1161220:CDS |
| ATCTTGCAGCACTCCCTTAA+TGG | 0.250955 | 7_4:-51460385 | Msa1161220:CDS |
| TCTGCAGCCGGTTCCCTCTT+AGG | 0.263612 | 7_4:+51459899 | None:intergenic |
| GGCCATTATCACTGCCATTA+AGG | 0.275121 | 7_4:+51460371 | None:intergenic |
| TTGTCTTTAGACCCCTTACC+TGG | 0.290967 | 7_4:-51461314 | Msa1161220:CDS |
| TCCCTTAATGGCAGTGATAA+TGG | 0.304610 | 7_4:-51460373 | Msa1161220:CDS |
| TGTTCCTCTCTGCTTTGTTT+TGG | 0.304619 | 7_4:-51463488 | Msa1161220:CDS |
| TTTGATTGTATTTGATAAAT+GGG | 0.307902 | 7_4:+51461029 | None:intergenic |
| CCAAACACTTCCTTAGATAA+TGG | 0.320477 | 7_4:-51463711 | Msa1161220:five_prime_UTR |
| ATGGCAGGCAAAGATATTTC+CGG | 0.322581 | 7_4:+51461242 | None:intergenic |
| TCTTCAGTTTCCATTATCTA+AGG | 0.322846 | 7_4:+51463701 | None:intergenic |
| CCATTATCTAAGGAAGTGTT+TGG | 0.332008 | 7_4:+51463711 | None:intergenic |
| TACGATAATTCCAAATATAA+AGG | 0.345382 | 7_4:-51463435 | Msa1161220:intron |
| CATTATCTAAGGAAGTGTTT+GGG | 0.356368 | 7_4:+51463712 | None:intergenic |
| AAGATCATTATTTACGTCCT+TGG | 0.367072 | 7_4:-51461210 | Msa1161220:CDS |
| GTCTTGTTTGGCCCAGGTAA+GGG | 0.369195 | 7_4:+51461302 | None:intergenic |
| GCAGCAGGAGGGCCAACTTC+AGG | 0.372253 | 7_4:+51460181 | None:intergenic |
| TTCTAAGAGTGTTGTTAAAT+GGG | 0.377203 | 7_4:-51463738 | Msa1161220:five_prime_UTR |
| TGTCTTGTTTGGCCCAGGTA+AGG | 0.388951 | 7_4:+51461301 | None:intergenic |
| GATGGTGATGATGGTGGTGG+TGG | 0.389466 | 7_4:+51460284 | None:intergenic |
| AGCATCTACCGTTGAACCTT+CGG | 0.392513 | 7_4:+51460561 | None:intergenic |
| GGTGATGATGGTGGTGGTGG+TGG | 0.392715 | 7_4:+51460287 | None:intergenic |
| GCCATTATCACTGCCATTAA+GGG | 0.401536 | 7_4:+51460372 | None:intergenic |
| TAATGATCTTATCAAACTAA+TGG | 0.408481 | 7_4:+51461223 | None:intergenic |
| GTTGCACCCTCTCCAGGTTT+AGG | 0.414542 | 7_4:+51460208 | None:intergenic |
| TCCTCTGTTCTACTTGCGGT+TGG | 0.418884 | 7_4:-51460523 | Msa1161220:CDS |
| CAACCTAGCACACAGTTTCA+TGG | 0.428795 | 7_4:-51459875 | Msa1161220:CDS |
| TGGCAGGTGTTGTTCTTCTT+CGG | 0.429039 | 7_4:+51463632 | None:intergenic |
| TTAGGCGCAGGTGCAGGTAT+AGG | 0.429275 | 7_4:+51460226 | None:intergenic |
| GGCGGAGTTGCACCCTCTCC+AGG | 0.431156 | 7_4:+51460202 | None:intergenic |
| CCTCTGTTCTACTTGCGGTT+GGG | 0.431465 | 7_4:-51460522 | Msa1161220:CDS |
| TGAATAACACTGAATTTGGT+AGG | 0.435607 | 7_4:-51460432 | Msa1161220:CDS |
| TGGCAGGCAAAGATATTTCC+GGG | 0.437842 | 7_4:+51461243 | None:intergenic |
| GCATGGGCAAAAGCAACATT+TGG | 0.437945 | 7_4:+51459932 | None:intergenic |
| GATTGTTGTGATCTACAAAA+GGG | 0.448387 | 7_4:+51463460 | None:intergenic |
| AAAACATAGGATAAAGCAAT+TGG | 0.451008 | 7_4:-51460488 | Msa1161220:CDS |
| CAGCCGGTTCCCTCTTAGGT+GGG | 0.451322 | 7_4:+51459903 | None:intergenic |
| CAGCTCACGTCATCCTTGTT+CGG | 0.451515 | 7_4:-51461167 | Msa1161220:CDS |
| CCCTCTCCAGGTTTAGGCGC+AGG | 0.452485 | 7_4:+51460214 | None:intergenic |
| CTGACAAGTCAGCTAAAGTC+TGG | 0.458421 | 7_4:-51460996 | Msa1161220:CDS |
| TTATTCAAGCCAAGATTATG+AGG | 0.460053 | 7_4:+51460448 | None:intergenic |
| CCCTCCTGCTGCTACAGAAA+GGG | 0.462319 | 7_4:-51460170 | Msa1161220:CDS |
| GGTGCAGTTCTTCTCAGATT+CGG | 0.462637 | 7_4:-51463560 | Msa1161220:CDS |
| ACAGAGGATTGAATGGTAGT+AGG | 0.463534 | 7_4:+51460538 | None:intergenic |
| CTATGCTCAAATGGACAATC+AGG | 0.465437 | 7_4:+51460112 | None:intergenic |
| AGAGATTTGACAAACCTCAT+AGG | 0.465865 | 7_4:+51460959 | None:intergenic |
| TCTCAGATTCGGAAACTCCT+TGG | 0.465973 | 7_4:-51463549 | Msa1161220:CDS |
| GCAGGAGAAGGTGACCTCGC+TGG | 0.466298 | 7_4:+51460349 | None:intergenic |
| GCCACGTGGCGTAACATCTT+CGG | 0.469673 | 7_4:-51463613 | Msa1161220:CDS |
| CGAACAAGGATGACGTGAGC+TGG | 0.470456 | 7_4:+51461168 | None:intergenic |
| ATCATGGGACCTCATAATCT+TGG | 0.470519 | 7_4:-51460457 | Msa1161220:CDS |
| CAGGAGAAGGTGACCTCGCT+GGG | 0.474476 | 7_4:+51460350 | None:intergenic |
| AGATTGTTGTGATCTACAAA+AGG | 0.480787 | 7_4:+51463459 | None:intergenic |
| GGAGAATGAGGCACAGGAGC+AGG | 0.482291 | 7_4:+51460331 | None:intergenic |
| CCTGCACCTGCGCCTAAACC+TGG | 0.483664 | 7_4:-51460220 | Msa1161220:CDS |
| GCCCTTTCTGTAGCAGCAGG+AGG | 0.484718 | 7_4:+51460169 | None:intergenic |
| TGTGATGGTGATGGTGATGA+TGG | 0.491864 | 7_4:+51460275 | None:intergenic |
| GGATTCCTTCATCAAAACAT+AGG | 0.492387 | 7_4:-51460501 | Msa1161220:CDS |
| TGAGAATGATGTTCAATGCT+AGG | 0.492577 | 7_4:+51460034 | None:intergenic |
| GACCTTTGTCTATGCTCAAA+TGG | 0.492585 | 7_4:+51460103 | None:intergenic |
| GGTGGTGATGATGGTGATGG+TGG | 0.493318 | 7_4:+51460305 | None:intergenic |
| GTTGTTGTTGTTCAACCAAT+GGG | 0.493823 | 7_4:-51463660 | Msa1161220:exon |
| GGTGCAACTCCGCCTGAAGT+TGG | 0.497452 | 7_4:-51460193 | Msa1161220:CDS |
| GCAGCCGGTTCCCTCTTAGG+TGG | 0.498899 | 7_4:+51459902 | None:intergenic |
| GCCCTCCTGCTGCTACAGAA+AGG | 0.502793 | 7_4:-51460171 | Msa1161220:CDS |
| AGCCGGTTCCCTCTTAGGTG+GGG | 0.507911 | 7_4:+51459904 | None:intergenic |
| ATTTCCGGGTGTCCACCATC+AGG | 0.508066 | 7_4:+51461257 | None:intergenic |
| GCAATTGGCACAAACCATCA+TGG | 0.508845 | 7_4:-51460473 | Msa1161220:CDS |
| ATTACGTCTGACATCCTATG+AGG | 0.515393 | 7_4:-51460973 | Msa1161220:intron |
| GCCGGTTCCCTCTTAGGTGG+GGG | 0.515542 | 7_4:+51459905 | None:intergenic |
| GGTGCCCTTTCTGTAGCAGC+AGG | 0.515906 | 7_4:+51460166 | None:intergenic |
| TCTTGTTTGGCCCAGGTAAG+GGG | 0.516302 | 7_4:+51461303 | None:intergenic |
| GTGCTAGGTTGTTCTGCAGC+CGG | 0.518057 | 7_4:+51459887 | None:intergenic |
| AATTTGTTATCTTCTAGCAC+AGG | 0.520170 | 7_4:+51461488 | None:intergenic |
| GAGAATGATGTTCAATGCTA+GGG | 0.520653 | 7_4:+51460035 | None:intergenic |
| TCAATCCTCTGTTCTACTTG+CGG | 0.521044 | 7_4:-51460527 | Msa1161220:CDS |
| GGTGGTGGTGATGATGGTGA+TGG | 0.523129 | 7_4:+51460302 | None:intergenic |
| GGTGATGGTGATGATGGTGG+TGG | 0.523958 | 7_4:+51460281 | None:intergenic |
| ATCGAATTCCGAAGGTTCAA+CGG | 0.524363 | 7_4:-51460569 | Msa1161220:CDS |
| CCAGGTTTAGGCGCAGGTGC+AGG | 0.529452 | 7_4:+51460220 | None:intergenic |
| GCAGGTATAGGAGAAGTTGC+AGG | 0.530037 | 7_4:+51460238 | None:intergenic |
| CAAGACAAAAGTGGTATTTG+CGG | 0.534592 | 7_4:-51461285 | Msa1161220:CDS |
| TTGAGCATAGACAAAGGTCT+AGG | 0.536480 | 7_4:-51460099 | Msa1161220:CDS |
| GATCTTATCAAACTAATGGC+AGG | 0.537561 | 7_4:+51461227 | None:intergenic |
| CTGAATGAGATGCATGTGTA+GGG | 0.538600 | 7_4:+51459975 | None:intergenic |
| AACCTAGCACACAGTTTCAT+GGG | 0.539203 | 7_4:-51459874 | Msa1161220:CDS |
| TGAGGCACAGGAGCAGGAGA+AGG | 0.539362 | 7_4:+51460337 | None:intergenic |
| AGGCGTACTTGAGTAGCGGC+AGG | 0.539689 | 7_4:+51461428 | None:intergenic |
| TGTTGTTGTTGTTCAACCAA+TGG | 0.540690 | 7_4:-51463661 | Msa1161220:exon |
| CGATCCTGATGGTGGACACC+CGG | 0.542807 | 7_4:-51461261 | Msa1161220:CDS |
| GAATAACACTGAATTTGGTA+GGG | 0.544457 | 7_4:-51460431 | Msa1161220:CDS |
| CCCTTTCTGTAGCAGCAGGA+GGG | 0.545573 | 7_4:+51460170 | None:intergenic |
| AAGATGTTACGCCACGTGGC+AGG | 0.552304 | 7_4:+51463616 | None:intergenic |
| TGATGATGGTGATGGTGGTG+TGG | 0.559292 | 7_4:+51460310 | None:intergenic |
| CTTGTTTGCACTGTCTGCAG+AGG | 0.566318 | 7_4:+51461074 | None:intergenic |
| AAGTAGAACAGAGGATTGAA+TGG | 0.566930 | 7_4:+51460531 | None:intergenic |
| TGTCTTTAGACCCCTTACCT+GGG | 0.572432 | 7_4:-51461313 | Msa1161220:CDS |
| TTTAGGGTTTGAAAGAGGAA+AGG | 0.572828 | 7_4:+51463847 | None:intergenic |
| CGAGAATGCATCTGAAACCA+AGG | 0.573103 | 7_4:+51463532 | None:intergenic |
| TTCGGATCCACCACAAAACA+CGG | 0.579307 | 7_4:-51463595 | Msa1161220:CDS |
| CAAAGGTCTAGGCGTAGTGG+TGG | 0.580570 | 7_4:-51460088 | Msa1161220:CDS |
| GATGGTGATGGTGATGATGG+TGG | 0.581107 | 7_4:+51460278 | None:intergenic |
| AAGATTATGAGGTCCCATGA+TGG | 0.582626 | 7_4:+51460459 | None:intergenic |
| GAAGTGTTGAAATTTAAAGG+AGG | 0.585415 | 7_4:-51461128 | Msa1161220:CDS |
| CAATTGGCACAAACCATCAT+GGG | 0.587612 | 7_4:-51460472 | Msa1161220:CDS |
| ATTATCTAAGGAAGTGTTTG+GGG | 0.593321 | 7_4:+51463713 | None:intergenic |
| ATTAAGGGAGTGCTGCAAGA+TGG | 0.595899 | 7_4:+51460387 | None:intergenic |
| GCAGGAGGGCCAACTTCAGG+CGG | 0.599889 | 7_4:+51460184 | None:intergenic |
| GTCATCTTATCGAATTCCGA+AGG | 0.601739 | 7_4:-51460577 | Msa1161220:CDS |
| GATGAGAATTGTGATGGTGA+TGG | 0.605321 | 7_4:+51460266 | None:intergenic |
| TTTGCGGTCGATCCTGATGG+TGG | 0.606445 | 7_4:-51461269 | Msa1161220:CDS |
| ACCTGCGCCTAAACCTGGAG+AGG | 0.609172 | 7_4:-51460215 | Msa1161220:CDS |
| CCTGCGCCTAAACCTGGAGA+GGG | 0.613532 | 7_4:-51460214 | Msa1161220:CDS |
| ACGTGAGCTGGAGAACTGAT+TGG | 0.613893 | 7_4:+51461180 | None:intergenic |
| TCAATGCTAGGGGCAACAGC+AGG | 0.619563 | 7_4:+51460046 | None:intergenic |
| TGATGGTGGTGTGGAGAATG+AGG | 0.622179 | 7_4:+51460319 | None:intergenic |
| AGATAACAAATTGCAGCTCG+AGG | 0.623638 | 7_4:-51461477 | Msa1161220:CDS |
| GAGTTAGATGAGAATTGTGA+TGG | 0.623883 | 7_4:+51460260 | None:intergenic |
| TGGGCCAAACAAGACAAAAG+TGG | 0.624406 | 7_4:-51461294 | Msa1161220:CDS |
| ATTTGTTATCTTCTAGCACA+GGG | 0.624537 | 7_4:+51461489 | None:intergenic |
| AAAGTGGGGATCTCCGAACA+AGG | 0.624948 | 7_4:+51461154 | None:intergenic |
| TGGTGTGGAGAATGAGGCAC+AGG | 0.625178 | 7_4:+51460325 | None:intergenic |
| TATTTCATCACCAAAACCAC+AGG | 0.630295 | 7_4:-51460005 | Msa1161220:CDS |
| AGCCCATGAAACTGTGTGCT+AGG | 0.632259 | 7_4:+51459872 | None:intergenic |
| TTTGGCAAAGGACTCAAAGC+AGG | 0.632407 | 7_4:+51459950 | None:intergenic |
| GTATTTGCGGTCGATCCTGA+TGG | 0.632702 | 7_4:-51461272 | Msa1161220:CDS |
| GCAAAAGCAACATTTGGCAA+AGG | 0.636891 | 7_4:+51459938 | None:intergenic |
| AGACAAAGGTCTAGGCGTAG+TGG | 0.638068 | 7_4:-51460091 | Msa1161220:CDS |
| TCCGAAGATGTTACGCCACG+TGG | 0.638338 | 7_4:+51463612 | None:intergenic |
| ACTGAATGAGATGCATGTGT+AGG | 0.638798 | 7_4:+51459974 | None:intergenic |
| AACTGATTGGCGTATTACCA+AGG | 0.644789 | 7_4:+51461193 | None:intergenic |
| ATTGTTGTGATCTACAAAAG+GGG | 0.657816 | 7_4:+51463461 | None:intergenic |
| TGCTCAAATGGACAATCAGG+AGG | 0.660607 | 7_4:+51460115 | None:intergenic |
| AGAGGAAATGCATTCTGTTG+TGG | 0.663252 | 7_4:+51461092 | None:intergenic |
| AGAGAGGCGTACTTGAGTAG+CGG | 0.664531 | 7_4:+51461424 | None:intergenic |
| AAAGGTCTAGGCGTAGTGGT+GGG | 0.665741 | 7_4:-51460087 | Msa1161220:CDS |
| AGAATGATGTTCAATGCTAG+GGG | 0.670709 | 7_4:+51460036 | None:intergenic |
| GAATGAGATGCATGTGTAGG+GGG | 0.673662 | 7_4:+51459977 | None:intergenic |
| TTGTTGTGATCTACAAAAGG+GGG | 0.679856 | 7_4:+51463462 | None:intergenic |
| GTCCATTTGAGCATAGACAA+AGG | 0.679916 | 7_4:-51460105 | Msa1161220:CDS |
| TATCATTAAGCATACTCACA+TGG | 0.688242 | 7_4:+51459839 | None:intergenic |
| CCCAACCGCAAGTAGAACAG+AGG | 0.688429 | 7_4:+51460522 | None:intergenic |
| AAAACACGGAAACACAGTGT+CGG | 0.696137 | 7_4:-51463581 | Msa1161220:CDS |
| TGAATGAGATGCATGTGTAG+GGG | 0.709910 | 7_4:+51459976 | None:intergenic |
| GAAGAACAACACCTGCCACG+TGG | 0.732325 | 7_4:-51463627 | Msa1161220:CDS |
| GTAACCAAAACAAAGCAGAG+AGG | 0.763212 | 7_4:+51463484 | None:intergenic |
| GCAGTGATAATGGCCCAGCG+AGG | 0.774394 | 7_4:-51460363 | Msa1161220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGTTATATTTAATAATT+GGG | - | chr7_4:51460663-51460682 | Msa1161220:intron | 10.0% |
| !!! | GTATTTAAAATTTTAATGAT+TGG | - | chr7_4:51460685-51460704 | Msa1161220:intron | 10.0% |
| !!! | TGTATTTTTTTAAAGAAAAA+AGG | + | chr7_4:51462473-51462492 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTTAAAAAAATAC+AGG | - | chr7_4:51462472-51462491 | Msa1161220:intron | 10.0% |
| !!! | TTTTTATTTTTTTGAAATGG+TGG | + | chr7_4:51459852-51459871 | None:intergenic | 15.0% |
| !!! | AAAATTTGAAGAATGTTTTA+GGG | + | chr7_4:51459989-51460008 | None:intergenic | 15.0% |
| !!! | AAAAATTTGAAGAATGTTTT+AGG | + | chr7_4:51459990-51460009 | None:intergenic | 15.0% |
| !! | AAAAAATTCACCTTTATATT+TGG | + | chr7_4:51460395-51460414 | None:intergenic | 15.0% |
| !!! | GAAAAAAGTAATAAATTTTG+TGG | - | chr7_4:51460562-51460581 | Msa1161220:CDS | 15.0% |
| !!! | TGGTTTTTTGTAATTTTTTT+TGG | - | chr7_4:51460582-51460601 | Msa1161220:CDS | 15.0% |
| !! | CTGAAGTTATATTTAATAAT+TGG | - | chr7_4:51460662-51460681 | Msa1161220:intron | 15.0% |
| !! | AGTATAACAATCTTAAAAAT+AGG | + | chr7_4:51460987-51461006 | None:intergenic | 15.0% |
| !!! | TATAACCAAGATTTTTTTTT+TGG | + | chr7_4:51461041-51461060 | None:intergenic | 15.0% |
| !! | TATTAAGTATTTAAGCAATT+GGG | + | chr7_4:51461386-51461405 | None:intergenic | 15.0% |
| !! | ATATTAAGTATTTAAGCAAT+TGG | + | chr7_4:51461387-51461406 | None:intergenic | 15.0% |
| !! | CTTAAATACTTAATATCAAT+TGG | - | chr7_4:51461391-51461410 | Msa1161220:intron | 15.0% |
| !! | ATAAATAAAATGAGACATAT+AGG | + | chr7_4:51462098-51462117 | None:intergenic | 15.0% |
| !! | TTTGATTGTATTTGATAAAT+GGG | + | chr7_4:51462791-51462810 | None:intergenic | 15.0% |
| !! | ATTTGATTGTATTTGATAAA+TGG | + | chr7_4:51462792-51462811 | None:intergenic | 15.0% |
| !! | TACGATAATTCCAAATATAA+AGG | - | chr7_4:51460382-51460401 | Msa1161220:CDS | 20.0% |
| !!! | TAAAGGTGAATTTTTTTTGT+TGG | - | chr7_4:51460399-51460418 | Msa1161220:CDS | 20.0% |
| !!! | ATTTTTTTTGTTGGATTTGT+CGG | - | chr7_4:51460408-51460427 | Msa1161220:CDS | 20.0% |
| !! | TGTTTATTAGCTAATTAAAG+AGG | - | chr7_4:51460738-51460757 | Msa1161220:intron | 20.0% |
| !!! | CTTTATACCTATTTTTAGTA+AGG | - | chr7_4:51460820-51460839 | Msa1161220:intron | 20.0% |
| !! | ATCATAACCTTACTAAAAAT+AGG | + | chr7_4:51460830-51460849 | None:intergenic | 20.0% |
| !!! | TGTACTTTTGAAAATTGTTT+TGG | - | chr7_4:51460861-51460880 | Msa1161220:intron | 20.0% |
| !!! | GTACTTTTGAAAATTGTTTT+GGG | - | chr7_4:51460862-51460881 | Msa1161220:intron | 20.0% |
| !!! | TACTTTTGAAAATTGTTTTG+GGG | - | chr7_4:51460863-51460882 | Msa1161220:intron | 20.0% |
| !! | AGTAACCAAAAAAAAAATCT+TGG | - | chr7_4:51461033-51461052 | Msa1161220:CDS | 20.0% |
| !! | ATTAAGTATTTAAGCAATTG+GGG | + | chr7_4:51461385-51461404 | None:intergenic | 20.0% |
| !!! | TTAAAAGAGTTTGATTTTGT+CGG | + | chr7_4:51462206-51462225 | None:intergenic | 20.0% |
| !!! | GATAATTTTAATAACTTTGC+AGG | - | chr7_4:51462266-51462285 | Msa1161220:intron | 20.0% |
| !!! | AAGCTTTTTTGTTTATAAGT+CGG | - | chr7_4:51462304-51462323 | Msa1161220:intron | 20.0% |
| !! | TAATGATCTTATCAAACTAA+TGG | + | chr7_4:51462597-51462616 | None:intergenic | 20.0% |
| !!! | TTTGAAGTGTTGAAATTTAA+AGG | - | chr7_4:51462686-51462705 | Msa1161220:intron | 20.0% |
| !!! | CTTTTTTAATATGTGTGAAA+TGG | + | chr7_4:51463026-51463045 | None:intergenic | 20.0% |
| !!! | AACAAGTGTCATTTTCTTTT+TGG | + | chr7_4:51459903-51459922 | None:intergenic | 25.0% |
| !!! | TTTCTAAGAGTGTTGTTAAA+TGG | - | chr7_4:51460078-51460097 | Msa1161220:CDS | 25.0% |
| !!! | TTCTAAGAGTGTTGTTAAAT+GGG | - | chr7_4:51460079-51460098 | Msa1161220:CDS | 25.0% |
| !!! | ATATAGATCTGTTTCTGTTT+TGG | - | chr7_4:51460450-51460469 | Msa1161220:CDS | 25.0% |
| !!! | TATAGATCTGTTTCTGTTTT+GGG | - | chr7_4:51460451-51460470 | Msa1161220:CDS | 25.0% |
| ! | TTGATTGTATTAATTGTGTG+TGG | - | chr7_4:51460509-51460528 | Msa1161220:CDS | 25.0% |
| !!! | AAAGAGGTAAACTTGTTTTT+CGG | - | chr7_4:51460754-51460773 | Msa1161220:intron | 25.0% |
| ! | TAAGACGTTAAAATCAATCT+TGG | - | chr7_4:51461006-51461025 | Msa1161220:CDS | 25.0% |
| ! | GGAAAACTAATTCTATTCAT+AGG | + | chr7_4:51461100-51461119 | None:intergenic | 25.0% |
| ! | ACACAAATGACAATATTTCA+GGG | + | chr7_4:51461196-51461215 | None:intergenic | 25.0% |
| ! | TAGAAAAATTGGTTGGATAT+CGG | - | chr7_4:51461242-51461261 | Msa1161220:CDS | 25.0% |
| ! | ATATCAATTGGTATCAAAGT+TGG | - | chr7_4:51461403-51461422 | Msa1161220:intron | 25.0% |
| !! | ACAGTTTTCCTACAAATTTA+GGG | - | chr7_4:51461758-51461777 | Msa1161220:intron | 25.0% |
| ! | AAATGAAATAGCAATGTAAG+TGG | - | chr7_4:51461843-51461862 | Msa1161220:intron | 25.0% |
| ! | ATGCAAGATGCATATTATTA+AGG | + | chr7_4:51461978-51461997 | None:intergenic | 25.0% |
| !! | AGTAAGCTTTTAATAGACAA+AGG | + | chr7_4:51462051-51462070 | None:intergenic | 25.0% |
| ! | ATAGAACTTTAACACTACAA+TGG | + | chr7_4:51462135-51462154 | None:intergenic | 25.0% |
| ! | AAATTGAGATAGGACATTAA+GGG | + | chr7_4:51462430-51462449 | None:intergenic | 25.0% |
| ! | AAAATTGAGATAGGACATTA+AGG | + | chr7_4:51462431-51462450 | None:intergenic | 25.0% |
| ! | CAATATGTGAAAATTGAGAT+AGG | + | chr7_4:51462440-51462459 | None:intergenic | 25.0% |
| ! | TTTCAACACTTCAAAAAAGT+GGG | + | chr7_4:51462681-51462700 | None:intergenic | 25.0% |
| ! | ATTTCAACACTTCAAAAAAG+TGG | + | chr7_4:51462682-51462701 | None:intergenic | 25.0% |
| !!! | TTCTTTTCTTACTGTTTCTA+TGG | - | chr7_4:51462884-51462903 | Msa1161220:intron | 25.0% |
| ! | TATGTGTGAAATGGTTAAAT+AGG | + | chr7_4:51463017-51463036 | None:intergenic | 25.0% |
| ! | AATATACCACTTATTGTTGT+TGG | - | chr7_4:51463127-51463146 | Msa1161220:intron | 25.0% |
| !! | ATATACCACTTATTGTTGTT+GGG | - | chr7_4:51463128-51463147 | Msa1161220:intron | 25.0% |
| !!! | TTTATCCTATGTTTTGATGA+AGG | + | chr7_4:51463324-51463343 | None:intergenic | 25.0% |
| ! | AAAACATAGGATAAAGCAAT+TGG | - | chr7_4:51463329-51463348 | Msa1161220:intron | 25.0% |
| !!! | AATGTTTTAGGGTTTGAAAG+AGG | + | chr7_4:51459978-51459997 | None:intergenic | 30.0% |
| !! | ATTATCTAAGGAAGTGTTTG+GGG | + | chr7_4:51460107-51460126 | None:intergenic | 30.0% |
| !! | CATTATCTAAGGAAGTGTTT+GGG | + | chr7_4:51460108-51460127 | None:intergenic | 30.0% |
| TCTTCAGTTTCCATTATCTA+AGG | + | chr7_4:51460119-51460138 | None:intergenic | 30.0% | |
| ATTGTTGTGATCTACAAAAG+GGG | + | chr7_4:51460359-51460378 | None:intergenic | 30.0% | |
| GATTGTTGTGATCTACAAAA+GGG | + | chr7_4:51460360-51460379 | None:intergenic | 30.0% | |
| AGATTGTTGTGATCTACAAA+AGG | + | chr7_4:51460361-51460380 | None:intergenic | 30.0% | |
| ! | ATTTTGTGATGCGCTTAATA+AGG | - | chr7_4:51460614-51460633 | Msa1161220:intron | 30.0% |
| ! | TTTTGTGATGCGCTTAATAA+GGG | - | chr7_4:51460615-51460634 | Msa1161220:intron | 30.0% |
| TTTGTGTCACACTGTAAAAT+AGG | + | chr7_4:51461121-51461140 | None:intergenic | 30.0% | |
| GACACAAATGACAATATTTC+AGG | + | chr7_4:51461197-51461216 | None:intergenic | 30.0% | |
| !! | ATTTTTCTAGAGAAAGCCTA+AGG | + | chr7_4:51461231-51461250 | None:intergenic | 30.0% |
| ! | TAGGCTTTCTCTAGAAAAAT+TGG | - | chr7_4:51461231-51461250 | Msa1161220:CDS | 30.0% |
| ! | CTTTCTCTAGAAAAATTGGT+TGG | - | chr7_4:51461235-51461254 | Msa1161220:CDS | 30.0% |
| TTAAAAGCAAGTTATCAAGG+GGG | + | chr7_4:51461611-51461630 | None:intergenic | 30.0% | |
| CTTAAAAGCAAGTTATCAAG+GGG | + | chr7_4:51461612-51461631 | None:intergenic | 30.0% | |
| CCTTAAAAGCAAGTTATCAA+GGG | + | chr7_4:51461613-51461632 | None:intergenic | 30.0% | |
| !!! | CCTTGATAACTTGCTTTTAA+GGG | - | chr7_4:51461611-51461630 | Msa1161220:intron | 30.0% |
| TGATAAGTATTCAAGCACTT+GGG | + | chr7_4:51461644-51461663 | None:intergenic | 30.0% | |
| TTAATAACAATGAGAGCTAG+CGG | + | chr7_4:51461711-51461730 | None:intergenic | 30.0% | |
| AAATTTGTAGGAAAACTGTG+TGG | + | chr7_4:51461757-51461776 | None:intergenic | 30.0% | |
| ! | CACAGTTTTCCTACAAATTT+AGG | - | chr7_4:51461757-51461776 | Msa1161220:intron | 30.0% |
| ! | TTGGTAATCCCTAAATTTGT+AGG | + | chr7_4:51461769-51461788 | None:intergenic | 30.0% |
| CAATGTAAGTGGTGTAATAT+TGG | - | chr7_4:51461854-51461873 | Msa1161220:intron | 30.0% | |
| TGTAATATTGGATCATGGAA+AGG | - | chr7_4:51461866-51461885 | Msa1161220:intron | 30.0% | |
| ACAAGTGGCAAATAGAAATT+TGG | - | chr7_4:51461912-51461931 | Msa1161220:intron | 30.0% | |
| TTCAGTTTCAGCTTCAATAA+AGG | - | chr7_4:51461938-51461957 | Msa1161220:intron | 30.0% | |
| !! | TATTTGTTGATTTAGTGGTG+TGG | + | chr7_4:51462183-51462202 | None:intergenic | 30.0% |
| !! | ATTTGTTATCTTCTAGCACA+GGG | + | chr7_4:51462331-51462350 | None:intergenic | 30.0% |
| !! | AATTTGTTATCTTCTAGCAC+AGG | + | chr7_4:51462332-51462351 | None:intergenic | 30.0% |
| !! | AATACCACTTTTGTCTTGTT+TGG | + | chr7_4:51462530-51462549 | None:intergenic | 30.0% |
| AAGATCATTATTTACGTCCT+TGG | - | chr7_4:51462607-51462626 | Msa1161220:intron | 30.0% | |
| TTCAACACTTCAAAAAAGTG+GGG | + | chr7_4:51462680-51462699 | None:intergenic | 30.0% | |
| !! | GAAGTGTTGAAATTTAAAGG+AGG | - | chr7_4:51462689-51462708 | Msa1161220:intron | 30.0% |
| ATAGGTCGATTATTGTGAAT+TGG | + | chr7_4:51462999-51463018 | None:intergenic | 30.0% | |
| ATAAGTGGTATATTACGCAA+GGG | + | chr7_4:51463121-51463140 | None:intergenic | 30.0% | |
| AATAAGTGGTATATTACGCA+AGG | + | chr7_4:51463122-51463141 | None:intergenic | 30.0% | |
| !! | TTTTGATTGGGTTTATTGGT+TGG | - | chr7_4:51463202-51463221 | Msa1161220:intron | 30.0% |
| TTATTCAAGCCAAGATTATG+AGG | + | chr7_4:51463372-51463391 | None:intergenic | 30.0% | |
| TGAATAACACTGAATTTGGT+AGG | - | chr7_4:51463385-51463404 | Msa1161220:intron | 30.0% | |
| GAATAACACTGAATTTGGTA+GGG | - | chr7_4:51463386-51463405 | Msa1161220:intron | 30.0% | |
| ! | TTTAGGGTTTGAAAGAGGAA+AGG | + | chr7_4:51459973-51459992 | None:intergenic | 35.0% |
| !! | CCATTATCTAAGGAAGTGTT+TGG | + | chr7_4:51460109-51460128 | None:intergenic | 35.0% |
| CCAAACACTTCCTTAGATAA+TGG | - | chr7_4:51460106-51460125 | Msa1161220:CDS | 35.0% | |
| ! | TGTTGTTGTTGTTCAACCAA+TGG | - | chr7_4:51460156-51460175 | Msa1161220:CDS | 35.0% |
| ! | GTTGTTGTTGTTCAACCAAT+GGG | - | chr7_4:51460157-51460176 | Msa1161220:CDS | 35.0% |
| TTGTTGTGATCTACAAAAGG+GGG | + | chr7_4:51460358-51460377 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTTGGATTTGTCGG+TGG | - | chr7_4:51460411-51460430 | Msa1161220:CDS | 35.0% |
| TGATAGAGACTCAGACATTA+TGG | - | chr7_4:51461301-51461320 | Msa1161220:CDS | 35.0% | |
| GATAGAGACTCAGACATTAT+GGG | - | chr7_4:51461302-51461321 | Msa1161220:CDS | 35.0% | |
| ATAGAGACTCAGACATTATG+GGG | - | chr7_4:51461303-51461322 | Msa1161220:CDS | 35.0% | |
| ! | TGCTTGGTGGAGTATTTAAA+TGG | - | chr7_4:51461356-51461375 | Msa1161220:intron | 35.0% |
| ! | GTATCAAAGTTGGTTGTTAG+TGG | - | chr7_4:51461413-51461432 | Msa1161220:intron | 35.0% |
| ! | ACGCTTTGCTTAATCTTTTC+CGG | + | chr7_4:51461469-51461488 | None:intergenic | 35.0% |
| ATCAAGTAGTATGAGATGCT+TGG | - | chr7_4:51461573-51461592 | Msa1161220:intron | 35.0% | |
| TAAAAGCAAGTTATCAAGGG+GGG | + | chr7_4:51461610-51461629 | None:intergenic | 35.0% | |
| !!! | CCCTTGATAACTTGCTTTTA+AGG | - | chr7_4:51461610-51461629 | Msa1161220:intron | 35.0% |
| CCCTTAAAAGCAAGTTATCA+AGG | + | chr7_4:51461614-51461633 | None:intergenic | 35.0% | |
| !!! | TGATAACTTGCTTTTAAGGG+AGG | - | chr7_4:51461614-51461633 | Msa1161220:intron | 35.0% |
| GATAAGTATTCAAGCACTTG+GGG | + | chr7_4:51461643-51461662 | None:intergenic | 35.0% | |
| CTGATAAGTATTCAAGCACT+TGG | + | chr7_4:51461645-51461664 | None:intergenic | 35.0% | |
| CTTACGAGTAAGAACATGTT+TGG | + | chr7_4:51461788-51461807 | None:intergenic | 35.0% | |
| GAATAACAAAAGCTTAAGCG+AGG | - | chr7_4:51461820-51461839 | Msa1161220:intron | 35.0% | |
| AGTGGTGTAATATTGGATCA+TGG | - | chr7_4:51461861-51461880 | Msa1161220:intron | 35.0% | |
| TGAAGTATAATGCTATGCAG+AGG | + | chr7_4:51462005-51462024 | None:intergenic | 35.0% | |
| !! | GTCGGTATTTGTTGATTTAG+TGG | + | chr7_4:51462188-51462207 | None:intergenic | 35.0% |
| AAGGGAAACTATTAAGAGAG+AGG | + | chr7_4:51462412-51462431 | None:intergenic | 35.0% | |
| CAAGACAAAAGTGGTATTTG+CGG | - | chr7_4:51462532-51462551 | Msa1161220:intron | 35.0% | |
| GATCTTATCAAACTAATGGC+AGG | + | chr7_4:51462593-51462612 | None:intergenic | 35.0% | |
| AGAGATTTGACAAACCTCAT+AGG | + | chr7_4:51462861-51462880 | None:intergenic | 35.0% | |
| AATCTTAAGCTATGCTATGC+TGG | - | chr7_4:51463179-51463198 | Msa1161220:intron | 35.0% | |
| !!! | TATGCTATGCTGGTTTTGAT+TGG | - | chr7_4:51463189-51463208 | Msa1161220:intron | 35.0% |
| !!! | ATGCTATGCTGGTTTTGATT+GGG | - | chr7_4:51463190-51463209 | Msa1161220:intron | 35.0% |
| !!! | CTGGTTTTGATTGGGTTTAT+TGG | - | chr7_4:51463198-51463217 | Msa1161220:intron | 35.0% |
| AAGTAGAACAGAGGATTGAA+TGG | + | chr7_4:51463289-51463308 | None:intergenic | 35.0% | |
| GGATTCCTTCATCAAAACAT+AGG | - | chr7_4:51463316-51463335 | Msa1161220:intron | 35.0% | |
| GGCTTGAATAACACTGAATT+TGG | - | chr7_4:51463381-51463400 | Msa1161220:intron | 35.0% | |
| GAGTTAGATGAGAATTGTGA+TGG | + | chr7_4:51463560-51463579 | None:intergenic | 35.0% | |
| ! | TGAGAACTTTTATGTGGTGT+AGG | + | chr7_4:51463675-51463694 | None:intergenic | 35.0% |
| ! | TGAGCTTGAGAACTTTTATG+TGG | + | chr7_4:51463681-51463700 | None:intergenic | 35.0% |
| AGAATGATGTTCAATGCTAG+GGG | + | chr7_4:51463784-51463803 | None:intergenic | 35.0% | |
| GAGAATGATGTTCAATGCTA+GGG | + | chr7_4:51463785-51463804 | None:intergenic | 35.0% | |
| TGAGAATGATGTTCAATGCT+AGG | + | chr7_4:51463786-51463805 | None:intergenic | 35.0% | |
| !!! | GTGGTTTTGGTGATGAAATA+GGG | + | chr7_4:51463812-51463831 | None:intergenic | 35.0% |
| !!! | TGTGGTTTTGGTGATGAAAT+AGG | + | chr7_4:51463813-51463832 | None:intergenic | 35.0% |
| TATTTCATCACCAAAACCAC+AGG | - | chr7_4:51463812-51463831 | Msa1161220:five_prime_UTR | 35.0% | |
| AAAACACGGAAACACAGTGT+CGG | - | chr7_4:51460236-51460255 | Msa1161220:CDS | 40.0% | |
| !!! | TGTTCCTCTCTGCTTTGTTT+TGG | - | chr7_4:51460329-51460348 | Msa1161220:CDS | 40.0% |
| GTAACCAAAACAAAGCAGAG+AGG | + | chr7_4:51460336-51460355 | None:intergenic | 40.0% | |
| TTGTGTGTGGTTGTGATTTG+TGG | - | chr7_4:51460522-51460541 | Msa1161220:CDS | 40.0% | |
| ! | TGTGTGTGGTTGTGATTTGT+GGG | - | chr7_4:51460523-51460542 | Msa1161220:CDS | 40.0% |
| ! | TTTGGGGCTGCATTACATAA+CGG | - | chr7_4:51460879-51460898 | Msa1161220:intron | 40.0% |
| TCTGCACATGAATCATCATC+AGG | - | chr7_4:51461151-51461170 | Msa1161220:CDS | 40.0% | |
| !! | ATCATCAGGTGACTAGTTTG+TGG | - | chr7_4:51461165-51461184 | Msa1161220:CDS | 40.0% |
| CATCTCATACGACTCAATGT+TGG | + | chr7_4:51461338-51461357 | None:intergenic | 40.0% | |
| ATTGAGTCGTATGAGATGCT+TGG | - | chr7_4:51461340-51461359 | Msa1161220:intron | 40.0% | |
| ! | AAAGTTGGTTGTTAGTGGCT+CGG | - | chr7_4:51461418-51461437 | Msa1161220:intron | 40.0% |
| TGATAAAGGCTCGGGTATTA+TGG | - | chr7_4:51461534-51461553 | Msa1161220:intron | 40.0% | |
| GATAAAGGCTCGGGTATTAT+GGG | - | chr7_4:51461535-51461554 | Msa1161220:intron | 40.0% | |
| ATAAAGGCTCGGGTATTATG+GGG | - | chr7_4:51461536-51461555 | Msa1161220:intron | 40.0% | |
| GCATCTCATACTACTTGATG+TGG | + | chr7_4:51461572-51461591 | None:intergenic | 40.0% | |
| AAGTAGTATGAGATGCTTGG+TGG | - | chr7_4:51461576-51461595 | Msa1161220:intron | 40.0% | |
| ATCATGGAAAGGAGTTGTTG+AGG | - | chr7_4:51461877-51461896 | Msa1161220:intron | 40.0% | |
| ! | TATAGGAGCATACAAGCATG+AGG | + | chr7_4:51462081-51462100 | None:intergenic | 40.0% |
| AGATAACAAATTGCAGCTCG+AGG | - | chr7_4:51462340-51462359 | Msa1161220:intron | 40.0% | |
| ATGGCAGGCAAAGATATTTC+CGG | + | chr7_4:51462578-51462597 | None:intergenic | 40.0% | |
| AACTGATTGGCGTATTACCA+AGG | + | chr7_4:51462627-51462646 | None:intergenic | 40.0% | |
| AGAGGAAATGCATTCTGTTG+TGG | + | chr7_4:51462728-51462747 | None:intergenic | 40.0% | |
| ATTACGTCTGACATCCTATG+AGG | - | chr7_4:51462844-51462863 | Msa1161220:intron | 40.0% | |
| GGTCGATTATTGTGAATTGG+AGG | + | chr7_4:51462996-51463015 | None:intergenic | 40.0% | |
| CAAGTCCCAACAACAATAAG+TGG | + | chr7_4:51463136-51463155 | None:intergenic | 40.0% | |
| GTCATCTTATCGAATTCCGA+AGG | - | chr7_4:51463240-51463259 | Msa1161220:intron | 40.0% | |
| ATCGAATTCCGAAGGTTCAA+CGG | - | chr7_4:51463248-51463267 | Msa1161220:intron | 40.0% | |
| ACAGAGGATTGAATGGTAGT+AGG | + | chr7_4:51463282-51463301 | None:intergenic | 40.0% | |
| TCAATCCTCTGTTCTACTTG+CGG | - | chr7_4:51463290-51463309 | Msa1161220:intron | 40.0% | |
| CAATTGGCACAAACCATCAT+GGG | - | chr7_4:51463345-51463364 | Msa1161220:intron | 40.0% | |
| AAGATTATGAGGTCCCATGA+TGG | + | chr7_4:51463361-51463380 | None:intergenic | 40.0% | |
| ATCATGGGACCTCATAATCT+TGG | - | chr7_4:51463360-51463379 | Msa1161220:intron | 40.0% | |
| TCCCTTAATGGCAGTGATAA+TGG | - | chr7_4:51463444-51463463 | Msa1161220:CDS | 40.0% | |
| GCCATTATCACTGCCATTAA+GGG | + | chr7_4:51463448-51463467 | None:intergenic | 40.0% | |
| ! | GATGAGAATTGTGATGGTGA+TGG | + | chr7_4:51463554-51463573 | None:intergenic | 40.0% |
| CTATGCTCAAATGGACAATC+AGG | + | chr7_4:51463708-51463727 | None:intergenic | 40.0% | |
| GTCCATTTGAGCATAGACAA+AGG | - | chr7_4:51463712-51463731 | Msa1161220:five_prime_UTR | 40.0% | |
| GACCTTTGTCTATGCTCAAA+TGG | + | chr7_4:51463717-51463736 | None:intergenic | 40.0% | |
| TTGAGCATAGACAAAGGTCT+AGG | - | chr7_4:51463718-51463737 | Msa1161220:five_prime_UTR | 40.0% | |
| TGAATGAGATGCATGTGTAG+GGG | + | chr7_4:51463844-51463863 | None:intergenic | 40.0% | |
| CTGAATGAGATGCATGTGTA+GGG | + | chr7_4:51463845-51463864 | None:intergenic | 40.0% | |
| ACTGAATGAGATGCATGTGT+AGG | + | chr7_4:51463846-51463865 | None:intergenic | 40.0% | |
| GCAAAAGCAACATTTGGCAA+AGG | + | chr7_4:51463882-51463901 | None:intergenic | 40.0% | |
| AACCTAGCACACAGTTTCAT+GGG | - | chr7_4:51463943-51463962 | Msa1161220:five_prime_UTR | 40.0% | |
| ! | TCTTCTTCGGCTTTTCCCAT+TGG | + | chr7_4:51460175-51460194 | None:intergenic | 45.0% |
| !! | TGGCAGGTGTTGTTCTTCTT+CGG | + | chr7_4:51460188-51460207 | None:intergenic | 45.0% |
| TTCGGATCCACCACAAAACA+CGG | - | chr7_4:51460222-51460241 | Msa1161220:CDS | 45.0% | |
| ! | TGTGTTTCCGTGTTTTGTGG+TGG | + | chr7_4:51460232-51460251 | None:intergenic | 45.0% |
| ! | CACTGTGTTTCCGTGTTTTG+TGG | + | chr7_4:51460235-51460254 | None:intergenic | 45.0% |
| GGTGCAGTTCTTCTCAGATT+CGG | - | chr7_4:51460257-51460276 | Msa1161220:CDS | 45.0% | |
| TCTCAGATTCGGAAACTCCT+TGG | - | chr7_4:51460268-51460287 | Msa1161220:CDS | 45.0% | |
| ! | CGAGAATGCATCTGAAACCA+AGG | + | chr7_4:51460288-51460307 | None:intergenic | 45.0% |
| !! | CTGCATTACATAACGGATGG+AGG | - | chr7_4:51460886-51460905 | Msa1161220:intron | 45.0% |
| ATAACAATGAGAGCTAGCGG+TGG | + | chr7_4:51461708-51461727 | None:intergenic | 45.0% | |
| ATGGAAAGGAGTTGTTGAGG+TGG | - | chr7_4:51461880-51461899 | Msa1161220:intron | 45.0% | |
| TGGAAAGGAGTTGTTGAGGT+GGG | - | chr7_4:51461881-51461900 | Msa1161220:intron | 45.0% | |
| AGGTGGGGATAATCAACAAG+TGG | - | chr7_4:51461897-51461916 | Msa1161220:intron | 45.0% | |
| GATTTAGTGGTGTGGCATAC+TGG | + | chr7_4:51462175-51462194 | None:intergenic | 45.0% | |
| TTGTCTTTAGACCCCTTACC+TGG | - | chr7_4:51462503-51462522 | Msa1161220:intron | 45.0% | |
| TGTCTTTAGACCCCTTACCT+GGG | - | chr7_4:51462504-51462523 | Msa1161220:intron | 45.0% | |
| !!! | ACTTTTGTCTTGTTTGGCCC+AGG | + | chr7_4:51462524-51462543 | None:intergenic | 45.0% |
| TGGGCCAAACAAGACAAAAG+TGG | - | chr7_4:51462523-51462542 | Msa1161220:intron | 45.0% | |
| TGGCAGGCAAAGATATTTCC+GGG | + | chr7_4:51462577-51462596 | None:intergenic | 45.0% | |
| CTGACAAGTCAGCTAAAGTC+TGG | - | chr7_4:51462821-51462840 | Msa1161220:intron | 45.0% | |
| AGCATCTACCGTTGAACCTT+CGG | + | chr7_4:51463259-51463278 | None:intergenic | 45.0% | |
| GCAATTGGCACAAACCATCA+TGG | - | chr7_4:51463344-51463363 | Msa1161220:intron | 45.0% | |
| !! | ATTAAGGGAGTGCTGCAAGA+TGG | + | chr7_4:51463433-51463452 | None:intergenic | 45.0% |
| ATCTTGCAGCACTCCCTTAA+TGG | - | chr7_4:51463432-51463451 | Msa1161220:intron | 45.0% | |
| GGCCATTATCACTGCCATTA+AGG | + | chr7_4:51463449-51463468 | None:intergenic | 45.0% | |
| !! | TGTGATGGTGATGGTGATGA+TGG | + | chr7_4:51463545-51463564 | None:intergenic | 45.0% |
| TGCTCAAATGGACAATCAGG+AGG | + | chr7_4:51463705-51463724 | None:intergenic | 45.0% | |
| GAATGAGATGCATGTGTAGG+GGG | + | chr7_4:51463843-51463862 | None:intergenic | 45.0% | |
| TTTGGCAAAGGACTCAAAGC+AGG | + | chr7_4:51463870-51463889 | None:intergenic | 45.0% | |
| GCATGGGCAAAAGCAACATT+TGG | + | chr7_4:51463888-51463907 | None:intergenic | 45.0% | |
| CAACCTAGCACACAGTTTCA+TGG | - | chr7_4:51463942-51463961 | Msa1161220:five_prime_UTR | 45.0% | |
| !!! | TTATTTTTATTTTTTTGAAA+TGG | + | chr7_4:51459855-51459874 | None:intergenic | 5.0% |
| !!! | TTTATTTATTTTTTCTATTT+TGG | - | chr7_4:51460787-51460806 | Msa1161220:intron | 5.0% |
| !!! | TTTTTTACATTTAATTTATT+TGG | - | chr7_4:51460926-51460945 | Msa1161220:intron | 5.0% |
| ! | TCGGTGGCTGCATTGTTTTC+TGG | - | chr7_4:51460427-51460446 | Msa1161220:CDS | 50.0% |
| ! | GGGCTGCATTACATAACGGA+TGG | - | chr7_4:51460883-51460902 | Msa1161220:intron | 50.0% |
| GAGTCGTATGAGATGCTTGG+TGG | - | chr7_4:51461343-51461362 | Msa1161220:intron | 50.0% | |
| ! | CAAAGCGTCATAGAGTGCAG+CGG | - | chr7_4:51461481-51461500 | Msa1161220:CDS | 50.0% |
| !! | CTGTGGCGGTGCTATGATAA+AGG | - | chr7_4:51461520-51461539 | Msa1161220:CDS | 50.0% |
| !! | GCGGTGCTATGATAAAGGCT+CGG | - | chr7_4:51461525-51461544 | Msa1161220:CDS | 50.0% |
| !! | CGGTGCTATGATAAAGGCTC+GGG | - | chr7_4:51461526-51461545 | Msa1161220:CDS | 50.0% |
| AGAGTCACGCACAACAGTTG+CGG | - | chr7_4:51461663-51461682 | Msa1161220:intron | 50.0% | |
| AGAGCTAGCGGTGGATCATA+TGG | + | chr7_4:51461699-51461718 | None:intergenic | 50.0% | |
| GGAAAGGAGTTGTTGAGGTG+GGG | - | chr7_4:51461882-51461901 | Msa1161220:intron | 50.0% | |
| ! | AGAGAGGCGTACTTGAGTAG+CGG | + | chr7_4:51462396-51462415 | None:intergenic | 50.0% |
| ! | TCTTGTTTGGCCCAGGTAAG+GGG | + | chr7_4:51462517-51462536 | None:intergenic | 50.0% |
| !! | GTCTTGTTTGGCCCAGGTAA+GGG | + | chr7_4:51462518-51462537 | None:intergenic | 50.0% |
| !! | TGTCTTGTTTGGCCCAGGTA+AGG | + | chr7_4:51462519-51462538 | None:intergenic | 50.0% |
| GTATTTGCGGTCGATCCTGA+TGG | - | chr7_4:51462545-51462564 | Msa1161220:intron | 50.0% | |
| ACGTGAGCTGGAGAACTGAT+TGG | + | chr7_4:51462640-51462659 | None:intergenic | 50.0% | |
| CAGCTCACGTCATCCTTGTT+CGG | - | chr7_4:51462650-51462669 | Msa1161220:intron | 50.0% | |
| AAAGTGGGGATCTCCGAACA+AGG | + | chr7_4:51462666-51462685 | None:intergenic | 50.0% | |
| CTTGTTTGCACTGTCTGCAG+AGG | + | chr7_4:51462746-51462765 | None:intergenic | 50.0% | |
| TCCTCTGTTCTACTTGCGGT+TGG | - | chr7_4:51463294-51463313 | Msa1161220:intron | 50.0% | |
| CCTCTGTTCTACTTGCGGTT+GGG | - | chr7_4:51463295-51463314 | Msa1161220:intron | 50.0% | |
| !! | TGATGGTGGTGTGGAGAATG+AGG | + | chr7_4:51463501-51463520 | None:intergenic | 50.0% |
| !! | TGATGATGGTGATGGTGGTG+TGG | + | chr7_4:51463510-51463529 | None:intergenic | 50.0% |
| !! | GATGGTGATGGTGATGATGG+TGG | + | chr7_4:51463542-51463561 | None:intergenic | 50.0% |
| GCAGGTATAGGAGAAGTTGC+AGG | + | chr7_4:51463582-51463601 | None:intergenic | 50.0% | |
| AGACAAAGGTCTAGGCGTAG+TGG | - | chr7_4:51463726-51463745 | Msa1161220:five_prime_UTR | 50.0% | |
| AAAGGTCTAGGCGTAGTGGT+GGG | - | chr7_4:51463730-51463749 | Msa1161220:five_prime_UTR | 50.0% | |
| AGCCCATGAAACTGTGTGCT+AGG | + | chr7_4:51463948-51463967 | None:intergenic | 50.0% | |
| GAAGAACAACACCTGCCACG+TGG | - | chr7_4:51460190-51460209 | Msa1161220:CDS | 55.0% | |
| AAGATGTTACGCCACGTGGC+AGG | + | chr7_4:51460204-51460223 | None:intergenic | 55.0% | |
| GCCACGTGGCGTAACATCTT+CGG | - | chr7_4:51460204-51460223 | Msa1161220:CDS | 55.0% | |
| TCCGAAGATGTTACGCCACG+TGG | + | chr7_4:51460208-51460227 | None:intergenic | 55.0% | |
| GTGTCGTGTCTCGTAGCCTT+AGG | - | chr7_4:51461212-51461231 | Msa1161220:CDS | 55.0% | |
| ! | TGGTTGTTAGTGGCTCGGAG+AGG | - | chr7_4:51461423-51461442 | Msa1161220:intron | 55.0% |
| ! | GGTTGTTAGTGGCTCGGAGA+GGG | - | chr7_4:51461424-51461443 | Msa1161220:intron | 55.0% |
| TCGGAGAGGGCTAACAATGG+AGG | - | chr7_4:51461437-51461456 | Msa1161220:CDS | 55.0% | |
| CGGAGAGGGCTAACAATGGA+GGG | - | chr7_4:51461438-51461457 | Msa1161220:CDS | 55.0% | |
| GGAGAGGGCTAACAATGGAG+GGG | - | chr7_4:51461439-51461458 | Msa1161220:CDS | 55.0% | |
| CTAACAATGGAGGGGCTGAC+CGG | - | chr7_4:51461447-51461466 | Msa1161220:CDS | 55.0% | |
| GCCACAGAGAGCTAACGTCT+CGG | + | chr7_4:51461507-51461526 | None:intergenic | 55.0% | |
| ! | GAGACGTTAGCTCTCTGTGG+CGG | - | chr7_4:51461506-51461525 | Msa1161220:CDS | 55.0% |
| GGAAAACTGTGTGGCAGTGC+TGG | + | chr7_4:51461748-51461767 | None:intergenic | 55.0% | |
| TTTGCGGTCGATCCTGATGG+TGG | - | chr7_4:51462548-51462567 | Msa1161220:intron | 55.0% | |
| ATTTCCGGGTGTCCACCATC+AGG | + | chr7_4:51462563-51462582 | None:intergenic | 55.0% | |
| CGAACAAGGATGACGTGAGC+TGG | + | chr7_4:51462652-51462671 | None:intergenic | 55.0% | |
| CCCAACCGCAAGTAGAACAG+AGG | + | chr7_4:51463298-51463317 | None:intergenic | 55.0% | |
| TGGTGTGGAGAATGAGGCAC+AGG | + | chr7_4:51463495-51463514 | None:intergenic | 55.0% | |
| !! | GGTGGTGATGATGGTGATGG+TGG | + | chr7_4:51463515-51463534 | None:intergenic | 55.0% |
| !! | GGTGGTGGTGATGATGGTGA+TGG | + | chr7_4:51463518-51463537 | None:intergenic | 55.0% |
| !! | GATGGTGATGATGGTGGTGG+TGG | + | chr7_4:51463536-51463555 | None:intergenic | 55.0% |
| !! | GGTGATGGTGATGATGGTGG+TGG | + | chr7_4:51463539-51463558 | None:intergenic | 55.0% |
| TTAGGCGCAGGTGCAGGTAT+AGG | + | chr7_4:51463594-51463613 | None:intergenic | 55.0% | |
| GTTGCACCCTCTCCAGGTTT+AGG | + | chr7_4:51463612-51463631 | None:intergenic | 55.0% | |
| CCCTTTCTGTAGCAGCAGGA+GGG | + | chr7_4:51463650-51463669 | None:intergenic | 55.0% | |
| CCCTCCTGCTGCTACAGAAA+GGG | - | chr7_4:51463647-51463666 | Msa1161220:exon | 55.0% | |
| CAAAGGTCTAGGCGTAGTGG+TGG | - | chr7_4:51463729-51463748 | Msa1161220:five_prime_UTR | 55.0% | |
| TCAATGCTAGGGGCAACAGC+AGG | + | chr7_4:51463774-51463793 | None:intergenic | 55.0% | |
| GTGCTAGGTTGTTCTGCAGC+CGG | + | chr7_4:51463933-51463952 | None:intergenic | 55.0% | |
| GGCTCGGAGAGGGCTAACAA+TGG | - | chr7_4:51461434-51461453 | Msa1161220:intron | 60.0% | |
| ! | GCCGAGACGTTAGCTCTCTG+TGG | - | chr7_4:51461503-51461522 | Msa1161220:CDS | 60.0% |
| AGGCGTACTTGAGTAGCGGC+AGG | + | chr7_4:51462392-51462411 | None:intergenic | 60.0% | |
| !! | CGATCCTGATGGTGGACACC+CGG | - | chr7_4:51462556-51462575 | Msa1161220:intron | 60.0% |
| !! | GCAGTGATAATGGCCCAGCG+AGG | - | chr7_4:51463454-51463473 | Msa1161220:CDS | 60.0% |
| CAGGAGAAGGTGACCTCGCT+GGG | + | chr7_4:51463470-51463489 | None:intergenic | 60.0% | |
| TGAGGCACAGGAGCAGGAGA+AGG | + | chr7_4:51463483-51463502 | None:intergenic | 60.0% | |
| GGAGAATGAGGCACAGGAGC+AGG | + | chr7_4:51463489-51463508 | None:intergenic | 60.0% | |
| !! | GGTGGTGGTGGTGGTGATGA+TGG | + | chr7_4:51463524-51463543 | None:intergenic | 60.0% |
| !! | GGTGATGATGGTGGTGGTGG+TGG | + | chr7_4:51463533-51463552 | None:intergenic | 60.0% |
| ACCTGCGCCTAAACCTGGAG+AGG | - | chr7_4:51463602-51463621 | Msa1161220:CDS | 60.0% | |
| CCTGCGCCTAAACCTGGAGA+GGG | - | chr7_4:51463603-51463622 | Msa1161220:CDS | 60.0% | |
| GGTGCAACTCCGCCTGAAGT+TGG | - | chr7_4:51463624-51463643 | Msa1161220:CDS | 60.0% | |
| GCCCTCCTGCTGCTACAGAA+AGG | - | chr7_4:51463646-51463665 | Msa1161220:exon | 60.0% | |
| GCCCTTTCTGTAGCAGCAGG+AGG | + | chr7_4:51463651-51463670 | None:intergenic | 60.0% | |
| GGTGCCCTTTCTGTAGCAGC+AGG | + | chr7_4:51463654-51463673 | None:intergenic | 60.0% | |
| ! | GGGGGTTCAGCCTGTGGTTT+TGG | + | chr7_4:51463825-51463844 | None:intergenic | 60.0% |
| TGTGTAGGGGGTTCAGCCTG+TGG | + | chr7_4:51463831-51463850 | None:intergenic | 60.0% | |
| CTTAGGTGGGGGCTCAGCAT+GGG | + | chr7_4:51463904-51463923 | None:intergenic | 60.0% | |
| TCTTAGGTGGGGGCTCAGCA+TGG | + | chr7_4:51463905-51463924 | None:intergenic | 60.0% | |
| ATGCTGAGCCCCCACCTAAG+AGG | - | chr7_4:51463904-51463923 | Msa1161220:five_prime_UTR | 60.0% | |
| TGCTGAGCCCCCACCTAAGA+GGG | - | chr7_4:51463905-51463924 | Msa1161220:five_prime_UTR | 60.0% | |
| ! | AGCCGGTTCCCTCTTAGGTG+GGG | + | chr7_4:51463916-51463935 | None:intergenic | 60.0% |
| ! | CAGCCGGTTCCCTCTTAGGT+GGG | + | chr7_4:51463917-51463936 | None:intergenic | 60.0% |
| ! | TCTGCAGCCGGTTCCCTCTT+AGG | + | chr7_4:51463921-51463940 | None:intergenic | 60.0% |
| GCAGGAGAAGGTGACCTCGC+TGG | + | chr7_4:51463471-51463490 | None:intergenic | 65.0% | |
| CCAGGTTTAGGCGCAGGTGC+AGG | + | chr7_4:51463600-51463619 | None:intergenic | 65.0% | |
| CCTGCACCTGCGCCTAAACC+TGG | - | chr7_4:51463597-51463616 | Msa1161220:CDS | 65.0% | |
| CCCTCTCCAGGTTTAGGCGC+AGG | + | chr7_4:51463606-51463625 | None:intergenic | 65.0% | |
| GCAGGAGGGCCAACTTCAGG+CGG | + | chr7_4:51463636-51463655 | None:intergenic | 65.0% | |
| GCAGCAGGAGGGCCAACTTC+AGG | + | chr7_4:51463639-51463658 | None:intergenic | 65.0% | |
| GCCCCCACCTAAGAGGGAAC+CGG | - | chr7_4:51463911-51463930 | Msa1161220:five_prime_UTR | 65.0% | |
| ! | GCCGGTTCCCTCTTAGGTGG+GGG | + | chr7_4:51463915-51463934 | None:intergenic | 65.0% |
| ! | GCAGCCGGTTCCCTCTTAGG+TGG | + | chr7_4:51463918-51463937 | None:intergenic | 65.0% |
| GGCGGAGTTGCACCCTCTCC+AGG | + | chr7_4:51463618-51463637 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 51459844 | 51463995 | 51459844 | ID=Msa1161220;Name=Msa1161220 |
| chr7_4 | mRNA | 51459844 | 51463995 | 51459844 | ID=Msa1161220-mRNA-1;Parent=Msa1161220;Name=Msa1161220-mRNA-1;_AED=0.17;_eAED=0.17;_QI=331|1|0.75|1|1|1|4|0|493 |
| chr7_4 | exon | 51459844 | 51460608 | 51459844 | ID=Msa1161220-mRNA-1:exon:14542;Parent=Msa1161220-mRNA-1 |
| chr7_4 | exon | 51460974 | 51461345 | 51460974 | ID=Msa1161220-mRNA-1:exon:14541;Parent=Msa1161220-mRNA-1 |
| chr7_4 | exon | 51461436 | 51461551 | 51461436 | ID=Msa1161220-mRNA-1:exon:14540;Parent=Msa1161220-mRNA-1 |
| chr7_4 | exon | 51463436 | 51463995 | 51463436 | ID=Msa1161220-mRNA-1:exon:14539;Parent=Msa1161220-mRNA-1 |
| chr7_4 | five_prime_UTR | 51463665 | 51463995 | 51463665 | ID=Msa1161220-mRNA-1:five_prime_utr;Parent=Msa1161220-mRNA-1 |
| chr7_4 | CDS | 51463436 | 51463664 | 51463436 | ID=Msa1161220-mRNA-1:cds;Parent=Msa1161220-mRNA-1 |
| chr7_4 | CDS | 51461436 | 51461551 | 51461436 | ID=Msa1161220-mRNA-1:cds;Parent=Msa1161220-mRNA-1 |
| chr7_4 | CDS | 51460974 | 51461345 | 51460974 | ID=Msa1161220-mRNA-1:cds;Parent=Msa1161220-mRNA-1 |
| chr7_4 | CDS | 51459844 | 51460608 | 51459844 | ID=Msa1161220-mRNA-1:cds;Parent=Msa1161220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
