Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426340 | XP_003624887.1 | 93.177 | 513 | 11 | 1 | 1 | 513 | 1 | 489 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426340 | G7L4U1 | 93.177 | 513 | 11 | 1 | 1 | 513 | 1 | 489 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090770 | Msa1426340 | 0.827074 | 1.912244e-54 | -8.615850e-47 |
| Msa1365700 | Msa1426340 | 0.840625 | 7.770775e-58 | -8.615850e-47 |
| Msa1426340 | Msa1453780 | 0.839045 | 2.003509e-57 | -8.615850e-47 |
| Msa0607340 | Msa1426340 | 0.804565 | 2.032353e-49 | -8.615850e-47 |
| Msa0183640 | Msa1426340 | 0.824731 | 6.884179e-54 | -8.615850e-47 |
| Msa1302190 | Msa1426340 | 0.807080 | 6.018788e-50 | -8.615850e-47 |
| Msa1342640 | Msa1426340 | 0.803561 | 3.286817e-49 | -8.615850e-47 |
| Msa1071630 | Msa1426340 | 0.943397 | 1.294460e-102 | -8.615850e-47 |
| Msa1117520 | Msa1426340 | 0.876378 | 1.464517e-68 | -8.615850e-47 |
| Msa1143930 | Msa1426340 | 0.807811 | 4.212669e-50 | -8.615850e-47 |
| Msa1161220 | Msa1426340 | 0.856291 | 3.553242e-62 | -8.615850e-47 |
| Msa0553220 | Msa1426340 | 0.811598 | 6.462848e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426340 | MtrunA17_Chr7g0255441 | 93.177 | 513 | 11 | 1 | 1 | 513 | 1 | 489 | 0.0 | 944 |
| Msa1426340 | MtrunA17_Chr2g0297561 | 36.152 | 343 | 177 | 11 | 1 | 336 | 1 | 308 | 2.56e-49 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426340 | AT3G56590.1 | 42.339 | 496 | 218 | 12 | 1 | 488 | 1 | 436 | 5.09e-90 | 284 |
| Msa1426340 | AT3G56590.2 | 42.339 | 496 | 218 | 12 | 1 | 488 | 1 | 436 | 1.24e-89 | 283 |
| Msa1426340 | AT3G10810.2 | 48.214 | 336 | 144 | 6 | 1 | 332 | 1 | 310 | 6.31e-80 | 258 |
| Msa1426340 | AT3G10810.1 | 48.214 | 336 | 144 | 6 | 1 | 332 | 1 | 310 | 7.12e-80 | 258 |
| Msa1426340 | AT1G10790.1 | 31.454 | 337 | 201 | 5 | 18 | 350 | 21 | 331 | 2.01e-33 | 130 |
Find 150 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTAAGAGTGTTGTTAAA+TGG | 0.160532 | tig0025986:-15963 | Msa1426340:five_prime_UTR |
| ATTTGATTGTATTTGATAAA+TGG | 0.161202 | tig0025986:+13257 | None:intergenic |
| TTTGAAGTGTTGAAATTTAA+AGG | 0.171687 | tig0025986:-13360 | Msa1426340:CDS |
| GGCTTGAATAACACTGAATT+TGG | 0.215115 | tig0025986:-12665 | Msa1426340:CDS |
| ATCTTGCAGCACTCCCTTAA+TGG | 0.250955 | tig0025986:-12614 | Msa1426340:CDS |
| TCTGCAGCCGGTTCCCTCTT+AGG | 0.263612 | tig0025986:+12128 | None:intergenic |
| GGCCATTATCACTGCCATTA+AGG | 0.275121 | tig0025986:+12600 | None:intergenic |
| TTGTCTTTAGACCCCTTACC+TGG | 0.290967 | tig0025986:-13543 | Msa1426340:CDS |
| TCCCTTAATGGCAGTGATAA+TGG | 0.304610 | tig0025986:-12602 | Msa1426340:CDS |
| TGTTCCTCTCTGCTTTGTTT+TGG | 0.304619 | tig0025986:-15712 | Msa1426340:CDS |
| TTTGATTGTATTTGATAAAT+GGG | 0.307902 | tig0025986:+13258 | None:intergenic |
| CCAAACACTTCCTTAGATAA+TGG | 0.320477 | tig0025986:-15935 | Msa1426340:five_prime_UTR |
| ATGGCAGGCAAAGATATTTC+CGG | 0.322581 | tig0025986:+13471 | None:intergenic |
| TCTTCAGTTTCCATTATCTA+AGG | 0.322846 | tig0025986:+15925 | None:intergenic |
| GGTGGTGGTGGTGATGGTGG+TGG | 0.323608 | tig0025986:+12531 | None:intergenic |
| CCATTATCTAAGGAAGTGTT+TGG | 0.332008 | tig0025986:+15935 | None:intergenic |
| TACGATAATTCCAAATATAA+AGG | 0.345382 | tig0025986:-15659 | Msa1426340:intron |
| GGTGATGATGGTGGTGGTGG+TGG | 0.350277 | tig0025986:+12516 | None:intergenic |
| CATTATCTAAGGAAGTGTTT+GGG | 0.356368 | tig0025986:+15936 | None:intergenic |
| GGTGGTGGTGATGGTGGTGG+TGG | 0.357866 | tig0025986:+12534 | None:intergenic |
| AAGATCATTATTTACGTCCT+TGG | 0.367072 | tig0025986:-13439 | Msa1426340:CDS |
| GTCTTGTTTGGCCCAGGTAA+GGG | 0.369195 | tig0025986:+13531 | None:intergenic |
| GCAGCAGGAGGGCCAACTTC+AGG | 0.372253 | tig0025986:+12410 | None:intergenic |
| TTCTAAGAGTGTTGTTAAAT+GGG | 0.377203 | tig0025986:-15962 | Msa1426340:five_prime_UTR |
| TGTCTTGTTTGGCCCAGGTA+AGG | 0.388951 | tig0025986:+13530 | None:intergenic |
| GATGGTGATGATGGTGGTGG+TGG | 0.389466 | tig0025986:+12513 | None:intergenic |
| AGCATCTACCGTTGAACCTT+CGG | 0.392513 | tig0025986:+12790 | None:intergenic |
| GCCATTATCACTGCCATTAA+GGG | 0.401536 | tig0025986:+12601 | None:intergenic |
| TAATGATCTTATCAAACTAA+TGG | 0.408481 | tig0025986:+13452 | None:intergenic |
| GTTGCACCCTCTCCAGGTTT+AGG | 0.414542 | tig0025986:+12437 | None:intergenic |
| TCCTCTGTTCTACTTGCGGT+TGG | 0.418884 | tig0025986:-12752 | Msa1426340:CDS |
| AATCTTAGGCTATGCTATGC+TGG | 0.418933 | tig0025986:-12867 | Msa1426340:CDS |
| TTAGGCGCAGATGCAGGTAT+AGG | 0.428232 | tig0025986:+12455 | None:intergenic |
| TGGCAGGTGTTGTTCTTCTT+CGG | 0.429039 | tig0025986:+15856 | None:intergenic |
| GGCGGAGTTGCACCCTCTCC+AGG | 0.431156 | tig0025986:+12431 | None:intergenic |
| CCTCTGTTCTACTTGCGGTT+GGG | 0.431465 | tig0025986:-12751 | Msa1426340:CDS |
| TGGTGATGGTGGTGGTGGTG+TGG | 0.432962 | tig0025986:+12539 | None:intergenic |
| TGAATAACACTGAATTTGGT+AGG | 0.435607 | tig0025986:-12661 | Msa1426340:CDS |
| TGGCAGGCAAAGATATTTCC+GGG | 0.437842 | tig0025986:+13472 | None:intergenic |
| GCATGGGCAAAAGCAACATT+TGG | 0.437945 | tig0025986:+12161 | None:intergenic |
| CCTGCATCTGCGCCTAAACC+TGG | 0.445419 | tig0025986:-12449 | Msa1426340:CDS |
| GATTGTTGTGATCTACAAAA+GGG | 0.448387 | tig0025986:+15684 | None:intergenic |
| AAAACATAGGATAAAGCAAT+TGG | 0.451008 | tig0025986:-12717 | Msa1426340:CDS |
| CAGCCGGTTCCCTCTTAGGT+GGG | 0.451322 | tig0025986:+12132 | None:intergenic |
| CAGCTCACGTCATCCTTGTT+CGG | 0.451515 | tig0025986:-13396 | Msa1426340:CDS |
| CTGACAAGTCAGCTAAAGTC+TGG | 0.458421 | tig0025986:-13225 | Msa1426340:CDS |
| TTATTCAAGCCAAGATTATG+AGG | 0.460053 | tig0025986:+12677 | None:intergenic |
| CCCTCCTGCTGCTACAGAAA+GGG | 0.462319 | tig0025986:-12399 | Msa1426340:CDS |
| GGTGCAGTTCTTCTCAGATT+CGG | 0.462637 | tig0025986:-15784 | Msa1426340:CDS |
| ACAGAGGATTGAATGGTAGT+AGG | 0.463534 | tig0025986:+12767 | None:intergenic |
| CTATGCTCAAATGGACAATC+AGG | 0.465437 | tig0025986:+12341 | None:intergenic |
| AGAGATTTGACAAACCTCAT+AGG | 0.465865 | tig0025986:+13188 | None:intergenic |
| TCTCAGATTCGGAAACTCCT+TGG | 0.465973 | tig0025986:-15773 | Msa1426340:CDS |
| GCAGGAGAAGGTGACCTCGC+TGG | 0.466298 | tig0025986:+12578 | None:intergenic |
| GCCACGTGGCGTAACATCTT+CGG | 0.469673 | tig0025986:-15837 | Msa1426340:CDS |
| CGAACAAGGATGACGTGAGC+TGG | 0.470456 | tig0025986:+13397 | None:intergenic |
| ATCATGGGACCTCATAATCT+TGG | 0.470519 | tig0025986:-12686 | Msa1426340:CDS |
| CAGGAGAAGGTGACCTCGCT+GGG | 0.474476 | tig0025986:+12579 | None:intergenic |
| CTGCTAGGTTGTTCTGCAGC+CGG | 0.476055 | tig0025986:+12116 | None:intergenic |
| AGATTGTTGTGATCTACAAA+AGG | 0.480787 | tig0025986:+15683 | None:intergenic |
| GGAGAATGAGGCACAGGAGC+AGG | 0.482291 | tig0025986:+12560 | None:intergenic |
| CAACCTAGCAGACAGTTTCA+TGG | 0.482306 | tig0025986:-12104 | Msa1426340:CDS |
| GCCCTTTCTGTAGCAGCAGG+AGG | 0.484718 | tig0025986:+12398 | None:intergenic |
| TGTGATGGTGATGGTGATGA+TGG | 0.491864 | tig0025986:+12504 | None:intergenic |
| GGATTCCTTCATCAAAACAT+AGG | 0.492387 | tig0025986:-12730 | Msa1426340:CDS |
| TGAGAATGATGTTCAATGCT+AGG | 0.492577 | tig0025986:+12263 | None:intergenic |
| GACCTTTGTCTATGCTCAAA+TGG | 0.492585 | tig0025986:+12332 | None:intergenic |
| GTTGTTGTTGTTCAACCAAT+GGG | 0.493823 | tig0025986:-15884 | Msa1426340:exon |
| GGTGCAACTCCGCCTGAAGT+TGG | 0.497452 | tig0025986:-12422 | Msa1426340:CDS |
| GCAGCCGGTTCCCTCTTAGG+TGG | 0.498899 | tig0025986:+12131 | None:intergenic |
| GCCCTCCTGCTGCTACAGAA+AGG | 0.502793 | tig0025986:-12400 | Msa1426340:CDS |
| AGCCGGTTCCCTCTTAGGTG+GGG | 0.507911 | tig0025986:+12133 | None:intergenic |
| ATTTCCGGGTGTCCACCATC+AGG | 0.508066 | tig0025986:+13486 | None:intergenic |
| GCAATTGGCACAAACCATCA+TGG | 0.508845 | tig0025986:-12702 | Msa1426340:CDS |
| ATTACGTCTGACATCCTATG+AGG | 0.515393 | tig0025986:-13202 | Msa1426340:intron |
| GCCGGTTCCCTCTTAGGTGG+GGG | 0.515542 | tig0025986:+12134 | None:intergenic |
| GGTGCCCTTTCTGTAGCAGC+AGG | 0.515906 | tig0025986:+12395 | None:intergenic |
| TCTTGTTTGGCCCAGGTAAG+GGG | 0.516302 | tig0025986:+13532 | None:intergenic |
| AATTTGTTATCTTCTAGCAC+AGG | 0.520170 | tig0025986:+13717 | None:intergenic |
| GAGAATGATGTTCAATGCTA+GGG | 0.520653 | tig0025986:+12264 | None:intergenic |
| TCAATCCTCTGTTCTACTTG+CGG | 0.521044 | tig0025986:-12756 | Msa1426340:CDS |
| GGTGATGGTGATGATGGTGG+TGG | 0.523958 | tig0025986:+12510 | None:intergenic |
| ATCGAATTCCGAAGGTTCAA+CGG | 0.524363 | tig0025986:-12798 | Msa1426340:CDS |
| GCAGGTATAGGAGAAGTTGC+AGG | 0.530037 | tig0025986:+12467 | None:intergenic |
| CCAGGTTTAGGCGCAGATGC+AGG | 0.533896 | tig0025986:+12449 | None:intergenic |
| CAAGACAAAAGTGGTATTTG+CGG | 0.534592 | tig0025986:-13514 | Msa1426340:CDS |
| TTGAGCATAGACAAAGGTCT+AGG | 0.536480 | tig0025986:-12328 | Msa1426340:CDS |
| GATCTTATCAAACTAATGGC+AGG | 0.537561 | tig0025986:+13456 | None:intergenic |
| CTGAATGAGATGCATGTGTA+GGG | 0.538600 | tig0025986:+12204 | None:intergenic |
| TGAGGCACAGGAGCAGGAGA+AGG | 0.539362 | tig0025986:+12566 | None:intergenic |
| AGGTGTACTTGAGTAGCGGC+AGG | 0.539689 | tig0025986:+13657 | None:intergenic |
| TGTTGTTGTTGTTCAACCAA+TGG | 0.540690 | tig0025986:-15885 | Msa1426340:exon |
| CGATCCTGATGGTGGACACC+CGG | 0.542807 | tig0025986:-13490 | Msa1426340:CDS |
| GAATAACACTGAATTTGGTA+GGG | 0.544457 | tig0025986:-12660 | Msa1426340:CDS |
| CCCTTTCTGTAGCAGCAGGA+GGG | 0.545573 | tig0025986:+12399 | None:intergenic |
| AAGATGTTACGCCACGTGGC+AGG | 0.552304 | tig0025986:+15840 | None:intergenic |
| AACCTAGCAGACAGTTTCAT+GGG | 0.559532 | tig0025986:-12103 | Msa1426340:CDS |
| TGGTGGTGGTGTGGAGAATG+AGG | 0.562853 | tig0025986:+12548 | None:intergenic |
| CTTGTTTGCACTGTCTGCAG+AGG | 0.566318 | tig0025986:+13303 | None:intergenic |
| AAGTAGAACAGAGGATTGAA+TGG | 0.566930 | tig0025986:+12760 | None:intergenic |
| TGTCTTTAGACCCCTTACCT+GGG | 0.572432 | tig0025986:-13542 | Msa1426340:CDS |
| TTTAGGGTTTGAAAGAGGAA+AGG | 0.572828 | tig0025986:+16072 | None:intergenic |
| CGAGAATGCATCTGAAACCA+AGG | 0.573103 | tig0025986:+15756 | None:intergenic |
| TTCGGATCCACCACAAAACA+CGG | 0.579307 | tig0025986:-15819 | Msa1426340:CDS |
| CAAAGGTCTAGGCGTAGTGG+TGG | 0.580570 | tig0025986:-12317 | Msa1426340:CDS |
| GATGGTGATGGTGATGATGG+TGG | 0.581107 | tig0025986:+12507 | None:intergenic |
| AAGATTATGAGGTCCCATGA+TGG | 0.582626 | tig0025986:+12688 | None:intergenic |
| GAAGTGTTGAAATTTAAAGG+AGG | 0.585415 | tig0025986:-13357 | Msa1426340:CDS |
| CAATTGGCACAAACCATCAT+GGG | 0.587612 | tig0025986:-12701 | Msa1426340:CDS |
| ATTATCTAAGGAAGTGTTTG+GGG | 0.593321 | tig0025986:+15937 | None:intergenic |
| ATTAAGGGAGTGCTGCAAGA+TGG | 0.595899 | tig0025986:+12616 | None:intergenic |
| GCAGGAGGGCCAACTTCAGG+CGG | 0.599889 | tig0025986:+12413 | None:intergenic |
| GTCATCTTATCGAATTCCGA+AGG | 0.601739 | tig0025986:-12806 | Msa1426340:CDS |
| GATGAGAATTGTGATGGTGA+TGG | 0.605321 | tig0025986:+12495 | None:intergenic |
| TTTGCGGTCGATCCTGATGG+TGG | 0.606445 | tig0025986:-13498 | Msa1426340:CDS |
| TGGTGTGGAGAATGAGGCAC+AGG | 0.612339 | tig0025986:+12554 | None:intergenic |
| ACGTGAGCTGGAGAACTGAT+TGG | 0.613893 | tig0025986:+13409 | None:intergenic |
| TCTGCGCCTAAACCTGGAGA+GGG | 0.619553 | tig0025986:-12443 | Msa1426340:CDS |
| TCAATGCTAGGGGCAACAGC+AGG | 0.619563 | tig0025986:+12275 | None:intergenic |
| AGCCCATGAAACTGTCTGCT+AGG | 0.623594 | tig0025986:+12101 | None:intergenic |
| AGATAACAAATTGCAGCTCG+AGG | 0.623638 | tig0025986:-13706 | Msa1426340:CDS |
| GAGTTAGATGAGAATTGTGA+TGG | 0.623883 | tig0025986:+12489 | None:intergenic |
| TGGGCCAAACAAGACAAAAG+TGG | 0.624406 | tig0025986:-13523 | Msa1426340:CDS |
| ATTTGTTATCTTCTAGCACA+GGG | 0.624537 | tig0025986:+13718 | None:intergenic |
| AAAGTGGGGATCTCCGAACA+AGG | 0.624948 | tig0025986:+13383 | None:intergenic |
| ATCTGCGCCTAAACCTGGAG+AGG | 0.627865 | tig0025986:-12444 | Msa1426340:CDS |
| TATTTCATCACCAAAACCAC+AGG | 0.630295 | tig0025986:-12234 | Msa1426340:CDS |
| TTTGGCAAAGGACTCAAAGC+AGG | 0.632407 | tig0025986:+12179 | None:intergenic |
| GTATTTGCGGTCGATCCTGA+TGG | 0.632702 | tig0025986:-13501 | Msa1426340:CDS |
| GCAAAAGCAACATTTGGCAA+AGG | 0.636891 | tig0025986:+12167 | None:intergenic |
| AGACAAAGGTCTAGGCGTAG+TGG | 0.638068 | tig0025986:-12320 | Msa1426340:CDS |
| TCCGAAGATGTTACGCCACG+TGG | 0.638338 | tig0025986:+15836 | None:intergenic |
| ACTGAATGAGATGCATGTGT+AGG | 0.638798 | tig0025986:+12203 | None:intergenic |
| AACTGATTGGCGTATTACCA+AGG | 0.644789 | tig0025986:+13422 | None:intergenic |
| ATTGTTGTGATCTACAAAAG+GGG | 0.657816 | tig0025986:+15685 | None:intergenic |
| TGCTCAAATGGACAATCAGG+AGG | 0.660607 | tig0025986:+12344 | None:intergenic |
| AGAGGAAATGCATTCTGTTG+TGG | 0.663252 | tig0025986:+13321 | None:intergenic |
| AGAGAGGTGTACTTGAGTAG+CGG | 0.664531 | tig0025986:+13653 | None:intergenic |
| AAAGGTCTAGGCGTAGTGGT+GGG | 0.665741 | tig0025986:-12316 | Msa1426340:CDS |
| AGAATGATGTTCAATGCTAG+GGG | 0.670709 | tig0025986:+12265 | None:intergenic |
| GAATGAGATGCATGTGTAGG+GGG | 0.673662 | tig0025986:+12206 | None:intergenic |
| TTGTTGTGATCTACAAAAGG+GGG | 0.679856 | tig0025986:+15686 | None:intergenic |
| GTCCATTTGAGCATAGACAA+AGG | 0.679916 | tig0025986:-12334 | Msa1426340:CDS |
| TATCATTAAGCATACTCACA+TGG | 0.688242 | tig0025986:+12068 | None:intergenic |
| CCCAACCGCAAGTAGAACAG+AGG | 0.688429 | tig0025986:+12751 | None:intergenic |
| AAAACACGGAAACACAGTGT+CGG | 0.696137 | tig0025986:-15805 | Msa1426340:CDS |
| TGAATGAGATGCATGTGTAG+GGG | 0.709910 | tig0025986:+12205 | None:intergenic |
| GAAGAACAACACCTGCCACG+TGG | 0.732325 | tig0025986:-15851 | Msa1426340:CDS |
| GTAACCAAAACAAAGCAGAG+AGG | 0.763212 | tig0025986:+15708 | None:intergenic |
| GCAGTGATAATGGCCCAGCG+AGG | 0.774394 | tig0025986:-12592 | Msa1426340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGTTATATTTAATAATT+GGG | - | tig0025986:12891-12910 | Msa1426340:intron | 10.0% |
| !!! | GTATTTAAAATTTTAATGAT+TGG | - | tig0025986:12913-12932 | Msa1426340:intron | 10.0% |
| !!! | TGTATTTTTTTAAAGAAAAA+AGG | + | tig0025986:14695-14714 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTTAAAAAAATAC+AGG | - | tig0025986:14694-14713 | Msa1426340:intron | 10.0% |
| !!! | TTTTTATTTTTTTGAAATGG+TGG | + | tig0025986:12081-12100 | None:intergenic | 15.0% |
| !!! | AAAATTTGAAGAATGTTTTA+GGG | + | tig0025986:12215-12234 | None:intergenic | 15.0% |
| !!! | AAAAATTTGAAGAATGTTTT+AGG | + | tig0025986:12216-12235 | None:intergenic | 15.0% |
| !! | AAAAAATTCACCTTTATATT+TGG | + | tig0025986:12622-12641 | None:intergenic | 15.0% |
| !!! | GAAAAAAGTAATAAATTTTG+TGG | - | tig0025986:12790-12809 | Msa1426340:CDS | 15.0% |
| !!! | TGGTTTTTTGTAATTTTTTT+TGG | - | tig0025986:12810-12829 | Msa1426340:CDS | 15.0% |
| !! | CTGAAGTTATATTTAATAAT+TGG | - | tig0025986:12890-12909 | Msa1426340:CDS | 15.0% |
| !! | TATTAAGTATTTAAGCAATT+GGG | + | tig0025986:13592-13611 | None:intergenic | 15.0% |
| !! | ATATTAAGTATTTAAGCAAT+TGG | + | tig0025986:13593-13612 | None:intergenic | 15.0% |
| !! | CTTAAATACTTAATATCAAT+TGG | - | tig0025986:13597-13616 | Msa1426340:intron | 15.0% |
| !! | ATAAATAAAATGAGACATAT+AGG | + | tig0025986:14320-14339 | None:intergenic | 15.0% |
| !! | TTTGATTGTATTTGATAAAT+GGG | + | tig0025986:15013-15032 | None:intergenic | 15.0% |
| !! | ATTTGATTGTATTTGATAAA+TGG | + | tig0025986:15014-15033 | None:intergenic | 15.0% |
| !! | TACGATAATTCCAAATATAA+AGG | - | tig0025986:12609-12628 | Msa1426340:CDS | 20.0% |
| !!! | AAAGGTGAATTTTTTTTTGT+TGG | - | tig0025986:12627-12646 | Msa1426340:CDS | 20.0% |
| !!! | TTTTTTTTTGTTGGATTTGT+CGG | - | tig0025986:12636-12655 | Msa1426340:CDS | 20.0% |
| !! | TGTTTATTAGCTAATTAAAG+AGG | - | tig0025986:12964-12983 | Msa1426340:intron | 20.0% |
| !!! | CTTTATACCTATTTTTAGTA+AGG | - | tig0025986:13046-13065 | Msa1426340:intron | 20.0% |
| !! | ATCATAACCTTACTAAAAAT+AGG | + | tig0025986:13056-13075 | None:intergenic | 20.0% |
| !!! | TGTACTTTTGAAAATTGTTT+TGG | - | tig0025986:13087-13106 | Msa1426340:intron | 20.0% |
| !!! | GTACTTTTGAAAATTGTTTT+GGG | - | tig0025986:13088-13107 | Msa1426340:intron | 20.0% |
| !!! | TACTTTTGAAAATTGTTTTG+GGG | - | tig0025986:13089-13108 | Msa1426340:intron | 20.0% |
| !! | ATTAAGTATTTAAGCAATTG+GGG | + | tig0025986:13591-13610 | None:intergenic | 20.0% |
| !!! | TTAAAAGAGTTTGATTTTGT+CGG | + | tig0025986:14428-14447 | None:intergenic | 20.0% |
| !!! | GATAATTTTAATAACTTTGC+AGG | - | tig0025986:14488-14507 | Msa1426340:intron | 20.0% |
| !!! | AAGCTTTTTTGTTTATAAGT+CGG | - | tig0025986:14526-14545 | Msa1426340:intron | 20.0% |
| !! | TAATGATCTTATCAAACTAA+TGG | + | tig0025986:14819-14838 | None:intergenic | 20.0% |
| !!! | TTTGAAGTGTTGAAATTTAA+AGG | - | tig0025986:14908-14927 | Msa1426340:intron | 20.0% |
| !!! | CTTTTTTAATATGTGTGAAA+TGG | + | tig0025986:15248-15267 | None:intergenic | 20.0% |
| !!! | TCTGATAACATTTTAATCTT+AGG | - | tig0025986:15387-15406 | Msa1426340:intron | 20.0% |
| !!! | AACAAGTGTCATTTTCTTTT+TGG | + | tig0025986:12132-12151 | None:intergenic | 25.0% |
| !!! | TTTCTAAGAGTGTTGTTAAA+TGG | - | tig0025986:12305-12324 | Msa1426340:CDS | 25.0% |
| !!! | TTCTAAGAGTGTTGTTAAAT+GGG | - | tig0025986:12306-12325 | Msa1426340:CDS | 25.0% |
| !!! | ATATAGATCTGTTTCTGTTT+TGG | - | tig0025986:12678-12697 | Msa1426340:CDS | 25.0% |
| !!! | TATAGATCTGTTTCTGTTTT+GGG | - | tig0025986:12679-12698 | Msa1426340:CDS | 25.0% |
| !!! | AAAGAGGTAAACTTGTTTTT+CGG | - | tig0025986:12980-12999 | Msa1426340:intron | 25.0% |
| ! | ACAATGTTATTCAAAATCAG+TGG | - | tig0025986:13195-13214 | Msa1426340:intron | 25.0% |
| ! | TAAGACGTTAAAATCAATCT+TGG | - | tig0025986:13239-13258 | Msa1426340:CDS | 25.0% |
| ! | GGAAAACTAATTCTATTCAT+AGG | + | tig0025986:13306-13325 | None:intergenic | 25.0% |
| ! | ACACAAATGACAATATTTCA+GGG | + | tig0025986:13402-13421 | None:intergenic | 25.0% |
| ! | TAGAAAAATTGGTTGGATAT+CGG | - | tig0025986:13448-13467 | Msa1426340:CDS | 25.0% |
| ! | ATATCAATTGGTATCAAAGT+TGG | - | tig0025986:13609-13628 | Msa1426340:intron | 25.0% |
| !! | ACAGTTTTCCTACAAATTTA+GGG | - | tig0025986:13980-13999 | Msa1426340:intron | 25.0% |
| ! | AAATGAAATAGCAATGTAAG+TGG | - | tig0025986:14065-14084 | Msa1426340:intron | 25.0% |
| ! | ATGCAAGATGCATATTATTA+AGG | + | tig0025986:14200-14219 | None:intergenic | 25.0% |
| !! | AGTAAGCTTTTAATAGACAA+AGG | + | tig0025986:14273-14292 | None:intergenic | 25.0% |
| ! | ATAGAACTTTAACACTACAA+TGG | + | tig0025986:14357-14376 | None:intergenic | 25.0% |
| ! | AAATTGAGATAGGACATTAA+GGG | + | tig0025986:14652-14671 | None:intergenic | 25.0% |
| ! | AAAATTGAGATAGGACATTA+AGG | + | tig0025986:14653-14672 | None:intergenic | 25.0% |
| ! | CAATATGTGAAAATTGAGAT+AGG | + | tig0025986:14662-14681 | None:intergenic | 25.0% |
| ! | TTTCAACACTTCAAAAAAGT+GGG | + | tig0025986:14903-14922 | None:intergenic | 25.0% |
| ! | ATTTCAACACTTCAAAAAAG+TGG | + | tig0025986:14904-14923 | None:intergenic | 25.0% |
| !!! | TTCTTTTCTTACTGTTTCTA+TGG | - | tig0025986:15106-15125 | Msa1426340:intron | 25.0% |
| ! | TATGTGTGAAATGGTTAAAT+AGG | + | tig0025986:15239-15258 | None:intergenic | 25.0% |
| ! | AATATACCACTTATTGTTGT+TGG | - | tig0025986:15349-15368 | Msa1426340:intron | 25.0% |
| !! | ATATACCACTTATTGTTGTT+GGG | - | tig0025986:15350-15369 | Msa1426340:intron | 25.0% |
| !!! | TTTATCCTATGTTTTGATGA+AGG | + | tig0025986:15546-15565 | None:intergenic | 25.0% |
| ! | AAAACATAGGATAAAGCAAT+TGG | - | tig0025986:15551-15570 | Msa1426340:intron | 25.0% |
| !!! | AATGTTTTAGGGTTTGAAAG+AGG | + | tig0025986:12204-12223 | None:intergenic | 30.0% |
| !! | ATTATCTAAGGAAGTGTTTG+GGG | + | tig0025986:12334-12353 | None:intergenic | 30.0% |
| !! | CATTATCTAAGGAAGTGTTT+GGG | + | tig0025986:12335-12354 | None:intergenic | 30.0% |
| TCTTCAGTTTCCATTATCTA+AGG | + | tig0025986:12346-12365 | None:intergenic | 30.0% | |
| ATTGTTGTGATCTACAAAAG+GGG | + | tig0025986:12586-12605 | None:intergenic | 30.0% | |
| GATTGTTGTGATCTACAAAA+GGG | + | tig0025986:12587-12606 | None:intergenic | 30.0% | |
| AGATTGTTGTGATCTACAAA+AGG | + | tig0025986:12588-12607 | None:intergenic | 30.0% | |
| TTGATTGTGTTAATTGTGTG+TGG | - | tig0025986:12737-12756 | Msa1426340:CDS | 30.0% | |
| ! | ATTTTGTGATGCGCTTAATA+AGG | - | tig0025986:12842-12861 | Msa1426340:CDS | 30.0% |
| ! | TTTTGTGATGCGCTTAATAA+GGG | - | tig0025986:12843-12862 | Msa1426340:CDS | 30.0% |
| TTTGTGTCACACTGTAAAAT+AGG | + | tig0025986:13327-13346 | None:intergenic | 30.0% | |
| GACACAAATGACAATATTTC+AGG | + | tig0025986:13403-13422 | None:intergenic | 30.0% | |
| !! | ATTTTTCTAGAGAAAGCCTA+AGG | + | tig0025986:13437-13456 | None:intergenic | 30.0% |
| ! | TAGGCTTTCTCTAGAAAAAT+TGG | - | tig0025986:13437-13456 | Msa1426340:CDS | 30.0% |
| ! | CTTTCTCTAGAAAAATTGGT+TGG | - | tig0025986:13441-13460 | Msa1426340:CDS | 30.0% |
| TTAAAAGCAAGTTATCAAGG+GGG | + | tig0025986:13834-13853 | None:intergenic | 30.0% | |
| CTTAAAAGCAAGTTATCAAG+GGG | + | tig0025986:13835-13854 | None:intergenic | 30.0% | |
| CCTTAAAAGCAAGTTATCAA+GGG | + | tig0025986:13836-13855 | None:intergenic | 30.0% | |
| !!! | CCTTGATAACTTGCTTTTAA+GGG | - | tig0025986:13834-13853 | Msa1426340:intron | 30.0% |
| TGATAAGTATTCAAGCACTT+GGG | + | tig0025986:13867-13886 | None:intergenic | 30.0% | |
| AAATTTGTAGGAAAACTGTG+TGG | + | tig0025986:13979-13998 | None:intergenic | 30.0% | |
| ! | CACAGTTTTCCTACAAATTT+AGG | - | tig0025986:13979-13998 | Msa1426340:intron | 30.0% |
| ! | TTGGTAATCCCTAAATTTGT+AGG | + | tig0025986:13991-14010 | None:intergenic | 30.0% |
| AAATAACAAAAGCTTAAGCG+AGG | - | tig0025986:14042-14061 | Msa1426340:intron | 30.0% | |
| CAATGTAAGTGGTGTAATAT+TGG | - | tig0025986:14076-14095 | Msa1426340:intron | 30.0% | |
| TGTAATATTGGATCATGGAA+AGG | - | tig0025986:14088-14107 | Msa1426340:intron | 30.0% | |
| ACAAGTGGCAAATAGAAATT+TGG | - | tig0025986:14134-14153 | Msa1426340:intron | 30.0% | |
| TTCAGTTTCAGCTTCAATAA+AGG | - | tig0025986:14160-14179 | Msa1426340:intron | 30.0% | |
| !! | TATTTGTTGATTTAGTGGTG+TGG | + | tig0025986:14405-14424 | None:intergenic | 30.0% |
| !! | ATTTGTTATCTTCTAGCACA+GGG | + | tig0025986:14553-14572 | None:intergenic | 30.0% |
| !! | AATTTGTTATCTTCTAGCAC+AGG | + | tig0025986:14554-14573 | None:intergenic | 30.0% |
| !! | AATACCACTTTTGTCTTGTT+TGG | + | tig0025986:14752-14771 | None:intergenic | 30.0% |
| AAGATCATTATTTACGTCCT+TGG | - | tig0025986:14829-14848 | Msa1426340:intron | 30.0% | |
| TTCAACACTTCAAAAAAGTG+GGG | + | tig0025986:14902-14921 | None:intergenic | 30.0% | |
| !! | GAAGTGTTGAAATTTAAAGG+AGG | - | tig0025986:14911-14930 | Msa1426340:intron | 30.0% |
| ATAGGTCGATTATTGTGAAT+TGG | + | tig0025986:15221-15240 | None:intergenic | 30.0% | |
| ATAAGTGGTATATTACGCAA+GGG | + | tig0025986:15343-15362 | None:intergenic | 30.0% | |
| AATAAGTGGTATATTACGCA+AGG | + | tig0025986:15344-15363 | None:intergenic | 30.0% | |
| !! | TTTTGATTGGGTTTATTGGT+TGG | - | tig0025986:15424-15443 | Msa1426340:intron | 30.0% |
| TTATTCAAGCCAAGATTATG+AGG | + | tig0025986:15594-15613 | None:intergenic | 30.0% | |
| TGAATAACACTGAATTTGGT+AGG | - | tig0025986:15607-15626 | Msa1426340:intron | 30.0% | |
| GAATAACACTGAATTTGGTA+GGG | - | tig0025986:15608-15627 | Msa1426340:intron | 30.0% | |
| ! | TTTAGGGTTTGAAAGAGGAA+AGG | + | tig0025986:12199-12218 | None:intergenic | 35.0% |
| !! | CCATTATCTAAGGAAGTGTT+TGG | + | tig0025986:12336-12355 | None:intergenic | 35.0% |
| CCAAACACTTCCTTAGATAA+TGG | - | tig0025986:12333-12352 | Msa1426340:CDS | 35.0% | |
| ! | TGTTGTTGTTGTTCAACCAA+TGG | - | tig0025986:12383-12402 | Msa1426340:CDS | 35.0% |
| ! | GTTGTTGTTGTTCAACCAAT+GGG | - | tig0025986:12384-12403 | Msa1426340:CDS | 35.0% |
| TTGTTGTGATCTACAAAAGG+GGG | + | tig0025986:12585-12604 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTTGGATTTGTCGG+TGG | - | tig0025986:12639-12658 | Msa1426340:CDS | 35.0% |
| ! | TGCTTGATGGAGTATTTAAG+TGG | - | tig0025986:13562-13581 | Msa1426340:intron | 35.0% |
| ! | AAAGTTGGTTGTTAGTAGCT+CGG | - | tig0025986:13624-13643 | Msa1426340:intron | 35.0% |
| ! | ACGCTTTGCTTAATCTTTTC+CGG | + | tig0025986:13675-13694 | None:intergenic | 35.0% |
| TAAAAGCAAGTTATCAAGGG+GGG | + | tig0025986:13833-13852 | None:intergenic | 35.0% | |
| !!! | CCCTTGATAACTTGCTTTTA+AGG | - | tig0025986:13833-13852 | Msa1426340:intron | 35.0% |
| CCCTTAAAAGCAAGTTATCA+AGG | + | tig0025986:13837-13856 | None:intergenic | 35.0% | |
| !!! | TGATAACTTGCTTTTAAGGG+AGG | - | tig0025986:13837-13856 | Msa1426340:intron | 35.0% |
| GATAAGTATTCAAGCACTTG+GGG | + | tig0025986:13866-13885 | None:intergenic | 35.0% | |
| CTGATAAGTATTCAAGCACT+TGG | + | tig0025986:13868-13887 | None:intergenic | 35.0% | |
| CTAATAACAATGAGAGCTAG+CGG | + | tig0025986:13933-13952 | None:intergenic | 35.0% | |
| CTTACGAGTAAGAACATGTT+TGG | + | tig0025986:14010-14029 | None:intergenic | 35.0% | |
| AGTGGTGTAATATTGGATCA+TGG | - | tig0025986:14083-14102 | Msa1426340:intron | 35.0% | |
| TGAAGTATAATGCTATGCAG+AGG | + | tig0025986:14227-14246 | None:intergenic | 35.0% | |
| !! | GTCGGTATTTGTTGATTTAG+TGG | + | tig0025986:14410-14429 | None:intergenic | 35.0% |
| AAGGGAAACTATTAAGAGAG+AGG | + | tig0025986:14634-14653 | None:intergenic | 35.0% | |
| CAAGACAAAAGTGGTATTTG+CGG | - | tig0025986:14754-14773 | Msa1426340:intron | 35.0% | |
| GATCTTATCAAACTAATGGC+AGG | + | tig0025986:14815-14834 | None:intergenic | 35.0% | |
| AGAGATTTGACAAACCTCAT+AGG | + | tig0025986:15083-15102 | None:intergenic | 35.0% | |
| !!! | TATGCTATGCTGGTTTTGAT+TGG | - | tig0025986:15411-15430 | Msa1426340:intron | 35.0% |
| !!! | ATGCTATGCTGGTTTTGATT+GGG | - | tig0025986:15412-15431 | Msa1426340:intron | 35.0% |
| !!! | CTGGTTTTGATTGGGTTTAT+TGG | - | tig0025986:15420-15439 | Msa1426340:intron | 35.0% |
| AAGTAGAACAGAGGATTGAA+TGG | + | tig0025986:15511-15530 | None:intergenic | 35.0% | |
| GGATTCCTTCATCAAAACAT+AGG | - | tig0025986:15538-15557 | Msa1426340:intron | 35.0% | |
| GGCTTGAATAACACTGAATT+TGG | - | tig0025986:15603-15622 | Msa1426340:intron | 35.0% | |
| GAGTTAGATGAGAATTGTGA+TGG | + | tig0025986:15782-15801 | None:intergenic | 35.0% | |
| ! | TGAGAACTTTTATGTGGTGT+AGG | + | tig0025986:15897-15916 | None:intergenic | 35.0% |
| ! | TGAGCTTGAGAACTTTTATG+TGG | + | tig0025986:15903-15922 | None:intergenic | 35.0% |
| AGAATGATGTTCAATGCTAG+GGG | + | tig0025986:16006-16025 | None:intergenic | 35.0% | |
| GAGAATGATGTTCAATGCTA+GGG | + | tig0025986:16007-16026 | None:intergenic | 35.0% | |
| TGAGAATGATGTTCAATGCT+AGG | + | tig0025986:16008-16027 | None:intergenic | 35.0% | |
| !!! | GTGGTTTTGGTGATGAAATA+GGG | + | tig0025986:16034-16053 | None:intergenic | 35.0% |
| !!! | TGTGGTTTTGGTGATGAAAT+AGG | + | tig0025986:16035-16054 | None:intergenic | 35.0% |
| TATTTCATCACCAAAACCAC+AGG | - | tig0025986:16034-16053 | Msa1426340:five_prime_UTR | 35.0% | |
| AAAACACGGAAACACAGTGT+CGG | - | tig0025986:12463-12482 | Msa1426340:CDS | 40.0% | |
| !!! | TGTTCCTCTCTGCTTTGTTT+TGG | - | tig0025986:12556-12575 | Msa1426340:CDS | 40.0% |
| GTAACCAAAACAAAGCAGAG+AGG | + | tig0025986:12563-12582 | None:intergenic | 40.0% | |
| TTGTGTGTGGTTGTGATTTG+TGG | - | tig0025986:12750-12769 | Msa1426340:CDS | 40.0% | |
| ! | TGTGTGTGGTTGTGATTTGT+GGG | - | tig0025986:12751-12770 | Msa1426340:CDS | 40.0% |
| ! | TTTGGGGCTGCATTACATAA+CGG | - | tig0025986:13105-13124 | Msa1426340:intron | 40.0% |
| TCTGCACATGAATCATCATC+AGG | - | tig0025986:13357-13376 | Msa1426340:CDS | 40.0% | |
| !! | ATCATCAGGTGACTAGTTTG+TGG | - | tig0025986:13371-13390 | Msa1426340:CDS | 40.0% |
| TGATAGAGACTCAGGCATTA+TGG | - | tig0025986:13507-13526 | Msa1426340:CDS | 40.0% | |
| GATAGAGACTCAGGCATTAT+GGG | - | tig0025986:13508-13527 | Msa1426340:CDS | 40.0% | |
| ATAGAGACTCAGGCATTATG+GGG | - | tig0025986:13509-13528 | Msa1426340:CDS | 40.0% | |
| TGATAAAGGCTCGGGTATTA+TGG | - | tig0025986:13740-13759 | Msa1426340:CDS | 40.0% | |
| GATAAAGGCTCGGGTATTAT+GGG | - | tig0025986:13741-13760 | Msa1426340:CDS | 40.0% | |
| ATAAAGGCTCGGGTATTATG+GGG | - | tig0025986:13742-13761 | Msa1426340:CDS | 40.0% | |
| ATCGAGTAGTATGAGATGCT+TGG | - | tig0025986:13779-13798 | Msa1426340:intron | 40.0% | |
| ! | CGCTAGCTCTCATTGTTATT+AGG | - | tig0025986:13931-13950 | Msa1426340:intron | 40.0% |
| ATCATGGAAAGGAGTTGTTG+AGG | - | tig0025986:14099-14118 | Msa1426340:intron | 40.0% | |
| ! | TATAGGAGCATACAAGCATG+AGG | + | tig0025986:14303-14322 | None:intergenic | 40.0% |
| AGATAACAAATTGCAGCTCG+AGG | - | tig0025986:14562-14581 | Msa1426340:intron | 40.0% | |
| ATGGCAGGCAAAGATATTTC+CGG | + | tig0025986:14800-14819 | None:intergenic | 40.0% | |
| AACTGATTGGCGTATTACCA+AGG | + | tig0025986:14849-14868 | None:intergenic | 40.0% | |
| AGAGGAAATGCATTCTGTTG+TGG | + | tig0025986:14950-14969 | None:intergenic | 40.0% | |
| ATTACGTCTGACATCCTATG+AGG | - | tig0025986:15066-15085 | Msa1426340:intron | 40.0% | |
| GGTCGATTATTGTGAATTGG+AGG | + | tig0025986:15218-15237 | None:intergenic | 40.0% | |
| CAAGTCCCAACAACAATAAG+TGG | + | tig0025986:15358-15377 | None:intergenic | 40.0% | |
| AATCTTAGGCTATGCTATGC+TGG | - | tig0025986:15401-15420 | Msa1426340:intron | 40.0% | |
| GTCATCTTATCGAATTCCGA+AGG | - | tig0025986:15462-15481 | Msa1426340:intron | 40.0% | |
| ATCGAATTCCGAAGGTTCAA+CGG | - | tig0025986:15470-15489 | Msa1426340:intron | 40.0% | |
| ACAGAGGATTGAATGGTAGT+AGG | + | tig0025986:15504-15523 | None:intergenic | 40.0% | |
| TCAATCCTCTGTTCTACTTG+CGG | - | tig0025986:15512-15531 | Msa1426340:intron | 40.0% | |
| CAATTGGCACAAACCATCAT+GGG | - | tig0025986:15567-15586 | Msa1426340:intron | 40.0% | |
| AAGATTATGAGGTCCCATGA+TGG | + | tig0025986:15583-15602 | None:intergenic | 40.0% | |
| ATCATGGGACCTCATAATCT+TGG | - | tig0025986:15582-15601 | Msa1426340:intron | 40.0% | |
| TCCCTTAATGGCAGTGATAA+TGG | - | tig0025986:15666-15685 | Msa1426340:CDS | 40.0% | |
| GCCATTATCACTGCCATTAA+GGG | + | tig0025986:15670-15689 | None:intergenic | 40.0% | |
| ! | GATGAGAATTGTGATGGTGA+TGG | + | tig0025986:15776-15795 | None:intergenic | 40.0% |
| CTATGCTCAAATGGACAATC+AGG | + | tig0025986:15930-15949 | None:intergenic | 40.0% | |
| GTCCATTTGAGCATAGACAA+AGG | - | tig0025986:15934-15953 | Msa1426340:five_prime_UTR | 40.0% | |
| GACCTTTGTCTATGCTCAAA+TGG | + | tig0025986:15939-15958 | None:intergenic | 40.0% | |
| TTGAGCATAGACAAAGGTCT+AGG | - | tig0025986:15940-15959 | Msa1426340:five_prime_UTR | 40.0% | |
| TGAATGAGATGCATGTGTAG+GGG | + | tig0025986:16066-16085 | None:intergenic | 40.0% | |
| CTGAATGAGATGCATGTGTA+GGG | + | tig0025986:16067-16086 | None:intergenic | 40.0% | |
| ACTGAATGAGATGCATGTGT+AGG | + | tig0025986:16068-16087 | None:intergenic | 40.0% | |
| GCAAAAGCAACATTTGGCAA+AGG | + | tig0025986:16104-16123 | None:intergenic | 40.0% | |
| AACCTAGCAGACAGTTTCAT+GGG | - | tig0025986:16165-16184 | Msa1426340:five_prime_UTR | 40.0% | |
| ! | TCTTCTTCGGCTTTTCCCAT+TGG | + | tig0025986:12402-12421 | None:intergenic | 45.0% |
| !! | TGGCAGGTGTTGTTCTTCTT+CGG | + | tig0025986:12415-12434 | None:intergenic | 45.0% |
| TTCGGATCCACCACAAAACA+CGG | - | tig0025986:12449-12468 | Msa1426340:CDS | 45.0% | |
| ! | TGTGTTTCCGTGTTTTGTGG+TGG | + | tig0025986:12459-12478 | None:intergenic | 45.0% |
| ! | CACTGTGTTTCCGTGTTTTG+TGG | + | tig0025986:12462-12481 | None:intergenic | 45.0% |
| GGTGCAGTTCTTCTCAGATT+CGG | - | tig0025986:12484-12503 | Msa1426340:CDS | 45.0% | |
| TCTCAGATTCGGAAACTCCT+TGG | - | tig0025986:12495-12514 | Msa1426340:CDS | 45.0% | |
| ! | CGAGAATGCATCTGAAACCA+AGG | + | tig0025986:12515-12534 | None:intergenic | 45.0% |
| !! | CTGCATTACATAACGGATGG+AGG | - | tig0025986:13112-13131 | Msa1426340:intron | 45.0% |
| GATGAGTCTGATAGAGACTC+AGG | - | tig0025986:13499-13518 | Msa1426340:CDS | 45.0% | |
| CATCTCATACGACTCAGTGT+TGG | + | tig0025986:13544-13563 | None:intergenic | 45.0% | |
| GAGTCGTATGAGATGCTTGA+TGG | - | tig0025986:13549-13568 | Msa1426340:CDS | 45.0% | |
| GCATCTCATACTACTCGATG+TGG | + | tig0025986:13778-13797 | None:intergenic | 45.0% | |
| GAGTAGTATGAGATGCTTGG+TGG | - | tig0025986:13782-13801 | Msa1426340:intron | 45.0% | |
| ATAACAATGAGAGCTAGCGG+TGG | + | tig0025986:13930-13949 | None:intergenic | 45.0% | |
| ATGGAAAGGAGTTGTTGAGG+TGG | - | tig0025986:14102-14121 | Msa1426340:intron | 45.0% | |
| TGGAAAGGAGTTGTTGAGGT+GGG | - | tig0025986:14103-14122 | Msa1426340:intron | 45.0% | |
| AGGTGGGGATAATCAACAAG+TGG | - | tig0025986:14119-14138 | Msa1426340:intron | 45.0% | |
| GATTTAGTGGTGTGGCATAC+TGG | + | tig0025986:14397-14416 | None:intergenic | 45.0% | |
| ! | AGAGAGGTGTACTTGAGTAG+CGG | + | tig0025986:14618-14637 | None:intergenic | 45.0% |
| TTGTCTTTAGACCCCTTACC+TGG | - | tig0025986:14725-14744 | Msa1426340:intron | 45.0% | |
| TGTCTTTAGACCCCTTACCT+GGG | - | tig0025986:14726-14745 | Msa1426340:intron | 45.0% | |
| !!! | ACTTTTGTCTTGTTTGGCCC+AGG | + | tig0025986:14746-14765 | None:intergenic | 45.0% |
| TGGGCCAAACAAGACAAAAG+TGG | - | tig0025986:14745-14764 | Msa1426340:intron | 45.0% | |
| TGGCAGGCAAAGATATTTCC+GGG | + | tig0025986:14799-14818 | None:intergenic | 45.0% | |
| CTGACAAGTCAGCTAAAGTC+TGG | - | tig0025986:15043-15062 | Msa1426340:intron | 45.0% | |
| AGCATCTACCGTTGAACCTT+CGG | + | tig0025986:15481-15500 | None:intergenic | 45.0% | |
| GCAATTGGCACAAACCATCA+TGG | - | tig0025986:15566-15585 | Msa1426340:intron | 45.0% | |
| !! | ATTAAGGGAGTGCTGCAAGA+TGG | + | tig0025986:15655-15674 | None:intergenic | 45.0% |
| ATCTTGCAGCACTCCCTTAA+TGG | - | tig0025986:15654-15673 | Msa1426340:intron | 45.0% | |
| GGCCATTATCACTGCCATTA+AGG | + | tig0025986:15671-15690 | None:intergenic | 45.0% | |
| !! | TGTGATGGTGATGGTGATGA+TGG | + | tig0025986:15767-15786 | None:intergenic | 45.0% |
| TGCTCAAATGGACAATCAGG+AGG | + | tig0025986:15927-15946 | None:intergenic | 45.0% | |
| GAATGAGATGCATGTGTAGG+GGG | + | tig0025986:16065-16084 | None:intergenic | 45.0% | |
| TTTGGCAAAGGACTCAAAGC+AGG | + | tig0025986:16092-16111 | None:intergenic | 45.0% | |
| GCATGGGCAAAAGCAACATT+TGG | + | tig0025986:16110-16129 | None:intergenic | 45.0% | |
| CAACCTAGCAGACAGTTTCA+TGG | - | tig0025986:16164-16183 | Msa1426340:five_prime_UTR | 45.0% | |
| !!! | TTATTTTTATTTTTTTGAAA+TGG | + | tig0025986:12084-12103 | None:intergenic | 5.0% |
| !!! | TTTATTTATTTTTTCTATTT+TGG | - | tig0025986:13013-13032 | Msa1426340:intron | 5.0% |
| !!! | TTTTTTACATTTAATTTATT+TGG | - | tig0025986:13159-13178 | Msa1426340:intron | 5.0% |
| !! | TCGGTGGCTGCATTGTTTTG+TGG | - | tig0025986:12655-12674 | Msa1426340:CDS | 50.0% |
| ! | GGGCTGCATTACATAACGGA+TGG | - | tig0025986:13109-13128 | Msa1426340:intron | 50.0% |
| TGGTTGTTAGTAGCTCGGAG+AGG | - | tig0025986:13629-13648 | Msa1426340:intron | 50.0% | |
| GGTTGTTAGTAGCTCGGAGA+GGG | - | tig0025986:13630-13649 | Msa1426340:intron | 50.0% | |
| ! | CAAAGCGTCATAGAGTGCAG+CGG | - | tig0025986:13687-13706 | Msa1426340:CDS | 50.0% |
| !! | CTGTGGCGGTGCTATGATAA+AGG | - | tig0025986:13726-13745 | Msa1426340:CDS | 50.0% |
| !! | GCGGTGCTATGATAAAGGCT+CGG | - | tig0025986:13731-13750 | Msa1426340:CDS | 50.0% |
| !! | CGGTGCTATGATAAAGGCTC+GGG | - | tig0025986:13732-13751 | Msa1426340:CDS | 50.0% |
| AGAGCTAGCGGTGGATCATA+TGG | + | tig0025986:13921-13940 | None:intergenic | 50.0% | |
| GGAAAGGAGTTGTTGAGGTG+GGG | - | tig0025986:14104-14123 | Msa1426340:intron | 50.0% | |
| ! | TCTTGTTTGGCCCAGGTAAG+GGG | + | tig0025986:14739-14758 | None:intergenic | 50.0% |
| !! | GTCTTGTTTGGCCCAGGTAA+GGG | + | tig0025986:14740-14759 | None:intergenic | 50.0% |
| !! | TGTCTTGTTTGGCCCAGGTA+AGG | + | tig0025986:14741-14760 | None:intergenic | 50.0% |
| GTATTTGCGGTCGATCCTGA+TGG | - | tig0025986:14767-14786 | Msa1426340:intron | 50.0% | |
| ACGTGAGCTGGAGAACTGAT+TGG | + | tig0025986:14862-14881 | None:intergenic | 50.0% | |
| CAGCTCACGTCATCCTTGTT+CGG | - | tig0025986:14872-14891 | Msa1426340:intron | 50.0% | |
| AAAGTGGGGATCTCCGAACA+AGG | + | tig0025986:14888-14907 | None:intergenic | 50.0% | |
| CTTGTTTGCACTGTCTGCAG+AGG | + | tig0025986:14968-14987 | None:intergenic | 50.0% | |
| TCCTCTGTTCTACTTGCGGT+TGG | - | tig0025986:15516-15535 | Msa1426340:intron | 50.0% | |
| CCTCTGTTCTACTTGCGGTT+GGG | - | tig0025986:15517-15536 | Msa1426340:intron | 50.0% | |
| !! | GATGGTGATGGTGATGATGG+TGG | + | tig0025986:15764-15783 | None:intergenic | 50.0% |
| GCAGGTATAGGAGAAGTTGC+AGG | + | tig0025986:15804-15823 | None:intergenic | 50.0% | |
| TTAGGCGCAGATGCAGGTAT+AGG | + | tig0025986:15816-15835 | None:intergenic | 50.0% | |
| AGACAAAGGTCTAGGCGTAG+TGG | - | tig0025986:15948-15967 | Msa1426340:five_prime_UTR | 50.0% | |
| AAAGGTCTAGGCGTAGTGGT+GGG | - | tig0025986:15952-15971 | Msa1426340:five_prime_UTR | 50.0% | |
| AGCCCATGAAACTGTCTGCT+AGG | + | tig0025986:16170-16189 | None:intergenic | 50.0% | |
| GAAGAACAACACCTGCCACG+TGG | - | tig0025986:12417-12436 | Msa1426340:CDS | 55.0% | |
| AAGATGTTACGCCACGTGGC+AGG | + | tig0025986:12431-12450 | None:intergenic | 55.0% | |
| GCCACGTGGCGTAACATCTT+CGG | - | tig0025986:12431-12450 | Msa1426340:CDS | 55.0% | |
| TCCGAAGATGTTACGCCACG+TGG | + | tig0025986:12435-12454 | None:intergenic | 55.0% | |
| GTGTCGTGTCTCGTAGCCTT+AGG | - | tig0025986:13418-13437 | Msa1426340:CDS | 55.0% | |
| AGCTCGGAGAGGGCTAACAA+TGG | - | tig0025986:13640-13659 | Msa1426340:intron | 55.0% | |
| TCGGAGAGGGCTAACAATGG+AGG | - | tig0025986:13643-13662 | Msa1426340:intron | 55.0% | |
| CGGAGAGGGCTAACAATGGA+GGG | - | tig0025986:13644-13663 | Msa1426340:intron | 55.0% | |
| GGAGAGGGCTAACAATGGAG+GGG | - | tig0025986:13645-13664 | Msa1426340:intron | 55.0% | |
| CTAACAATGGAGGGGCTGAC+CGG | - | tig0025986:13653-13672 | Msa1426340:intron | 55.0% | |
| GCCACAGAGAGCTAACGTCT+CGG | + | tig0025986:13713-13732 | None:intergenic | 55.0% | |
| ! | GAGACGTTAGCTCTCTGTGG+CGG | - | tig0025986:13712-13731 | Msa1426340:CDS | 55.0% |
| CAGAGCACGCACAACAGTTG+CGG | - | tig0025986:13885-13904 | Msa1426340:intron | 55.0% | |
| GGAAAACTGTGTGGCAGTGC+TGG | + | tig0025986:13970-13989 | None:intergenic | 55.0% | |
| AGGTGTACTTGAGTAGCGGC+AGG | + | tig0025986:14614-14633 | None:intergenic | 55.0% | |
| TTTGCGGTCGATCCTGATGG+TGG | - | tig0025986:14770-14789 | Msa1426340:intron | 55.0% | |
| ATTTCCGGGTGTCCACCATC+AGG | + | tig0025986:14785-14804 | None:intergenic | 55.0% | |
| CGAACAAGGATGACGTGAGC+TGG | + | tig0025986:14874-14893 | None:intergenic | 55.0% | |
| CCCAACCGCAAGTAGAACAG+AGG | + | tig0025986:15520-15539 | None:intergenic | 55.0% | |
| TGGTGTGGAGAATGAGGCAC+AGG | + | tig0025986:15717-15736 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGTGTGGAGAATG+AGG | + | tig0025986:15723-15742 | None:intergenic | 55.0% |
| !! | GATGGTGATGATGGTGGTGG+TGG | + | tig0025986:15758-15777 | None:intergenic | 55.0% |
| !! | GGTGATGGTGATGATGGTGG+TGG | + | tig0025986:15761-15780 | None:intergenic | 55.0% |
| ATCTGCGCCTAAACCTGGAG+AGG | - | tig0025986:15824-15843 | Msa1426340:CDS | 55.0% | |
| TCTGCGCCTAAACCTGGAGA+GGG | - | tig0025986:15825-15844 | Msa1426340:CDS | 55.0% | |
| GTTGCACCCTCTCCAGGTTT+AGG | + | tig0025986:15834-15853 | None:intergenic | 55.0% | |
| CCCTTTCTGTAGCAGCAGGA+GGG | + | tig0025986:15872-15891 | None:intergenic | 55.0% | |
| CCCTCCTGCTGCTACAGAAA+GGG | - | tig0025986:15869-15888 | Msa1426340:CDS | 55.0% | |
| CAAAGGTCTAGGCGTAGTGG+TGG | - | tig0025986:15951-15970 | Msa1426340:five_prime_UTR | 55.0% | |
| TCAATGCTAGGGGCAACAGC+AGG | + | tig0025986:15996-16015 | None:intergenic | 55.0% | |
| CTGCTAGGTTGTTCTGCAGC+CGG | + | tig0025986:16155-16174 | None:intergenic | 55.0% | |
| ! | GCCGAGACGTTAGCTCTCTG+TGG | - | tig0025986:13709-13728 | Msa1426340:CDS | 60.0% |
| !! | CGATCCTGATGGTGGACACC+CGG | - | tig0025986:14778-14797 | Msa1426340:intron | 60.0% |
| !! | GCAGTGATAATGGCCCAGCG+AGG | - | tig0025986:15676-15695 | Msa1426340:CDS | 60.0% |
| CAGGAGAAGGTGACCTCGCT+GGG | + | tig0025986:15692-15711 | None:intergenic | 60.0% | |
| TGAGGCACAGGAGCAGGAGA+AGG | + | tig0025986:15705-15724 | None:intergenic | 60.0% | |
| GGAGAATGAGGCACAGGAGC+AGG | + | tig0025986:15711-15730 | None:intergenic | 60.0% | |
| !! | TGGTGATGGTGGTGGTGGTG+TGG | + | tig0025986:15732-15751 | None:intergenic | 60.0% |
| !! | GATGATGGTGGTGGTGGTGG+TGG | + | tig0025986:15752-15771 | None:intergenic | 60.0% |
| !! | GGTGATGATGGTGGTGGTGG+TGG | + | tig0025986:15755-15774 | None:intergenic | 60.0% |
| CCAGGTTTAGGCGCAGATGC+AGG | + | tig0025986:15822-15841 | None:intergenic | 60.0% | |
| CCTGCATCTGCGCCTAAACC+TGG | - | tig0025986:15819-15838 | Msa1426340:CDS | 60.0% | |
| GGTGCAACTCCGCCTGAAGT+TGG | - | tig0025986:15846-15865 | Msa1426340:CDS | 60.0% | |
| GCCCTCCTGCTGCTACAGAA+AGG | - | tig0025986:15868-15887 | Msa1426340:CDS | 60.0% | |
| GCCCTTTCTGTAGCAGCAGG+AGG | + | tig0025986:15873-15892 | None:intergenic | 60.0% | |
| GGTGCCCTTTCTGTAGCAGC+AGG | + | tig0025986:15876-15895 | None:intergenic | 60.0% | |
| ! | GGGGGTTCAGCCTGTGGTTT+TGG | + | tig0025986:16047-16066 | None:intergenic | 60.0% |
| TGTGTAGGGGGTTCAGCCTG+TGG | + | tig0025986:16053-16072 | None:intergenic | 60.0% | |
| CTTAGGTGGGGGCTCAGCAT+GGG | + | tig0025986:16126-16145 | None:intergenic | 60.0% | |
| TCTTAGGTGGGGGCTCAGCA+TGG | + | tig0025986:16127-16146 | None:intergenic | 60.0% | |
| ATGCTGAGCCCCCACCTAAG+AGG | - | tig0025986:16126-16145 | Msa1426340:five_prime_UTR | 60.0% | |
| TGCTGAGCCCCCACCTAAGA+GGG | - | tig0025986:16127-16146 | Msa1426340:five_prime_UTR | 60.0% | |
| ! | AGCCGGTTCCCTCTTAGGTG+GGG | + | tig0025986:16138-16157 | None:intergenic | 60.0% |
| ! | CAGCCGGTTCCCTCTTAGGT+GGG | + | tig0025986:16139-16158 | None:intergenic | 60.0% |
| ! | TCTGCAGCCGGTTCCCTCTT+AGG | + | tig0025986:16143-16162 | None:intergenic | 60.0% |
| GCAGGAGAAGGTGACCTCGC+TGG | + | tig0025986:15693-15712 | None:intergenic | 65.0% | |
| !! | GGTGGTGGTGATGGTGGTGG+TGG | + | tig0025986:15737-15756 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGATGGTGG+TGG | + | tig0025986:15740-15759 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGATGG+TGG | + | tig0025986:15743-15762 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGGTGA+TGG | + | tig0025986:15746-15765 | None:intergenic | 65.0% |
| GCAGGAGGGCCAACTTCAGG+CGG | + | tig0025986:15858-15877 | None:intergenic | 65.0% | |
| GCAGCAGGAGGGCCAACTTC+AGG | + | tig0025986:15861-15880 | None:intergenic | 65.0% | |
| GCCCCCACCTAAGAGGGAAC+CGG | - | tig0025986:16133-16152 | Msa1426340:five_prime_UTR | 65.0% | |
| ! | GCCGGTTCCCTCTTAGGTGG+GGG | + | tig0025986:16137-16156 | None:intergenic | 65.0% |
| ! | GCAGCCGGTTCCCTCTTAGG+TGG | + | tig0025986:16140-16159 | None:intergenic | 65.0% |
| GGCGGAGTTGCACCCTCTCC+AGG | + | tig0025986:15840-15859 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025986 | gene | 12073 | 16217 | 12073 | ID=Msa1426340;Name=Msa1426340 |
| tig0025986 | mRNA | 12073 | 16217 | 12073 | ID=Msa1426340-mRNA-1;Parent=Msa1426340;Name=Msa1426340-mRNA-1;_AED=0.18;_eAED=0.18;_QI=329|0.66|0.75|1|1|1|4|0|517 |
| tig0025986 | exon | 12073 | 12909 | 12073 | ID=Msa1426340-mRNA-1:exon:4901;Parent=Msa1426340-mRNA-1 |
| tig0025986 | exon | 13203 | 13574 | 13203 | ID=Msa1426340-mRNA-1:exon:4900;Parent=Msa1426340-mRNA-1 |
| tig0025986 | exon | 13665 | 13780 | 13665 | ID=Msa1426340-mRNA-1:exon:4899;Parent=Msa1426340-mRNA-1 |
| tig0025986 | exon | 15660 | 16217 | 15660 | ID=Msa1426340-mRNA-1:exon:4898;Parent=Msa1426340-mRNA-1 |
| tig0025986 | five_prime_UTR | 15889 | 16217 | 15889 | ID=Msa1426340-mRNA-1:five_prime_utr;Parent=Msa1426340-mRNA-1 |
| tig0025986 | CDS | 15660 | 15888 | 15660 | ID=Msa1426340-mRNA-1:cds;Parent=Msa1426340-mRNA-1 |
| tig0025986 | CDS | 13665 | 13780 | 13665 | ID=Msa1426340-mRNA-1:cds;Parent=Msa1426340-mRNA-1 |
| tig0025986 | CDS | 13203 | 13574 | 13203 | ID=Msa1426340-mRNA-1:cds;Parent=Msa1426340-mRNA-1 |
| tig0025986 | CDS | 12073 | 12909 | 12073 | ID=Msa1426340-mRNA-1:cds;Parent=Msa1426340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
