Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161650 | ACJ85286.1 | 93.675 | 332 | 19 | 1 | 1 | 330 | 1 | 332 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161650 | sp|Q41009|TOC34_PEA | 89.389 | 311 | 30 | 2 | 1 | 309 | 1 | 310 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161650 | B7FKK2 | 93.675 | 332 | 19 | 1 | 1 | 330 | 1 | 332 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1072540 | Msa1161650 | 0.802625 | 5.132415e-49 | -8.615850e-47 |
| Msa1161650 | Msa1396000 | 0.849287 | 3.562261e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161650 | MtrunA17_Chr7g0254961 | 94.277 | 332 | 17 | 1 | 1 | 330 | 1 | 332 | 0.0 | 614 |
| Msa1161650 | MtrunA17_Chr3g0126061 | 93.578 | 327 | 20 | 1 | 4 | 330 | 7 | 332 | 0.0 | 598 |
| Msa1161650 | MtrunA17_Chr2g0292751 | 36.475 | 244 | 139 | 6 | 3 | 235 | 667 | 905 | 8.28e-34 | 132 |
| Msa1161650 | MtrunA17_Chr2g0292401 | 37.736 | 212 | 116 | 7 | 36 | 235 | 208 | 415 | 7.51e-33 | 129 |
| Msa1161650 | MtrunA17_Chr8g0380401 | 37.143 | 210 | 118 | 4 | 37 | 235 | 742 | 948 | 2.85e-31 | 124 |
| Msa1161650 | MtrunA17_Chr4g0067361 | 38.389 | 211 | 114 | 5 | 37 | 235 | 623 | 829 | 7.12e-31 | 123 |
| Msa1161650 | MtrunA17_Chr4g0064571 | 30.579 | 242 | 146 | 6 | 37 | 264 | 177 | 410 | 1.95e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161650 | AT5G05000.1 | 66.013 | 306 | 104 | 0 | 2 | 307 | 3 | 308 | 4.93e-155 | 437 |
| Msa1161650 | AT5G05000.2 | 66.013 | 306 | 104 | 0 | 2 | 307 | 3 | 308 | 4.93e-155 | 437 |
| Msa1161650 | AT5G05000.3 | 66.013 | 306 | 104 | 0 | 2 | 307 | 3 | 308 | 4.93e-155 | 437 |
| Msa1161650 | AT1G02280.1 | 60.410 | 293 | 115 | 1 | 6 | 298 | 5 | 296 | 2.99e-130 | 374 |
| Msa1161650 | AT1G02280.2 | 60.410 | 293 | 115 | 1 | 6 | 298 | 5 | 296 | 2.99e-130 | 374 |
| Msa1161650 | AT3G16620.1 | 36.134 | 238 | 138 | 5 | 7 | 235 | 425 | 657 | 1.82e-36 | 140 |
| Msa1161650 | AT2G16640.2 | 36.975 | 238 | 136 | 5 | 7 | 235 | 543 | 775 | 1.42e-35 | 137 |
| Msa1161650 | AT2G16640.1 | 36.975 | 238 | 136 | 5 | 7 | 235 | 543 | 775 | 1.42e-35 | 137 |
| Msa1161650 | AT2G16640.3 | 36.975 | 238 | 136 | 5 | 7 | 235 | 543 | 775 | 1.42e-35 | 137 |
| Msa1161650 | AT4G02510.1 | 36.283 | 226 | 136 | 2 | 18 | 235 | 836 | 1061 | 4.75e-30 | 121 |
| Msa1161650 | AT4G02510.4 | 36.283 | 226 | 136 | 2 | 18 | 235 | 836 | 1061 | 4.75e-30 | 121 |
| Msa1161650 | AT4G02510.3 | 36.283 | 226 | 136 | 2 | 18 | 235 | 836 | 1061 | 4.75e-30 | 121 |
| Msa1161650 | AT4G02510.2 | 36.283 | 226 | 136 | 2 | 18 | 235 | 836 | 1061 | 4.75e-30 | 121 |
| Msa1161650 | AT5G20300.3 | 33.816 | 207 | 124 | 3 | 37 | 235 | 38 | 239 | 6.03e-25 | 105 |
| Msa1161650 | AT5G20300.4 | 33.816 | 207 | 124 | 3 | 37 | 235 | 166 | 367 | 6.44e-25 | 105 |
| Msa1161650 | AT5G20300.1 | 33.816 | 207 | 124 | 3 | 37 | 235 | 166 | 367 | 6.44e-25 | 105 |
| Msa1161650 | AT5G20300.5 | 33.816 | 207 | 124 | 3 | 37 | 235 | 166 | 367 | 6.44e-25 | 105 |
| Msa1161650 | AT5G20300.2 | 33.816 | 207 | 124 | 3 | 37 | 235 | 166 | 367 | 6.44e-25 | 105 |
Find 108 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAACATCATCCTTCTTTA+AGG | 0.099227 | 7_4:+51826495 | None:intergenic |
| AACCAAATTGCTTGAACTTT+TGG | 0.170239 | 7_4:-51827657 | Msa1161650:CDS |
| TTTGATTCTTCAAGGATTTA+TGG | 0.185610 | 7_4:-51824371 | Msa1161650:three_prime_UTR |
| TTCCTATGCCGCACGCTAAT+AGG | 0.211707 | 7_4:+51824529 | None:intergenic |
| TCCCAAAAGTTCAAGCAATT+TGG | 0.280508 | 7_4:+51827655 | None:intergenic |
| ATCTATCGTCGCTTCCCTTC+CGG | 0.280823 | 7_4:-51827986 | Msa1161650:intron |
| GGTGACGATTAGTCCCTTTC+AGG | 0.306780 | 7_4:-51827080 | Msa1161650:intron |
| GTGGAATTAGTGGAACATTA+TGG | 0.310688 | 7_4:-51827735 | Msa1161650:intron |
| AGCAATTTGGTTTGTGTAGC+AGG | 0.313096 | 7_4:+51827668 | None:intergenic |
| TTGATTCTTCAAGGATTTAT+GGG | 0.315515 | 7_4:-51824370 | Msa1161650:three_prime_UTR |
| GGAATTTGTCTGTGATTTAG+AGG | 0.331508 | 7_4:-51824510 | Msa1161650:three_prime_UTR |
| ATGCAATTTCTGTGATTGTT+TGG | 0.334323 | 7_4:+51825038 | None:intergenic |
| TTATGTGAATTCAGTTTGAT+AGG | 0.342439 | 7_4:-51824477 | Msa1161650:three_prime_UTR |
| TAGGATAAGGTGGAGGGTTA+AGG | 0.344222 | 7_4:-51828035 | Msa1161650:five_prime_UTR |
| AAAGCTATTACCGACAGTTT+TGG | 0.350381 | 7_4:-51826649 | Msa1161650:CDS |
| ATGCATCTGGTGGAGAGAAC+TGG | 0.359249 | 7_4:+51826584 | None:intergenic |
| TCCTATGCCGCACGCTAATA+GGG | 0.363181 | 7_4:+51824530 | None:intergenic |
| AAGGATTTATGGGTCTTCAT+TGG | 0.364659 | 7_4:-51824360 | Msa1161650:three_prime_UTR |
| TCAACAAAACAGATACAAAA+AGG | 0.364771 | 7_4:+51824582 | None:intergenic |
| CTTAAAGAAGGATGATGTTC+AGG | 0.370155 | 7_4:-51826494 | Msa1161650:intron |
| TTCTTCCAAATGGGATTGCT+TGG | 0.375270 | 7_4:-51825075 | Msa1161650:CDS |
| TTTCCTCTCTGATTTGGATT+CGG | 0.383451 | 7_4:+51824968 | None:intergenic |
| TCCCCAAGTTTGATTCTTCA+AGG | 0.384383 | 7_4:-51824379 | Msa1161650:three_prime_UTR |
| TCCTGTCATATTTGCTCTAC+AGG | 0.390727 | 7_4:-51824936 | Msa1161650:intron |
| GCCTTTCCCCATCACAAGTA+TGG | 0.395215 | 7_4:+51827150 | None:intergenic |
| CTTGCTCGCGACACCATAAC+AGG | 0.401022 | 7_4:+51826941 | None:intergenic |
| GGAATCCAAGCAATCCCATT+TGG | 0.403774 | 7_4:+51825070 | None:intergenic |
| TGGTGACAGGTTCTTCCAAA+TGG | 0.415072 | 7_4:-51825085 | Msa1161650:intron |
| TCGAAACAGTATACTCTGAT+AGG | 0.420181 | 7_4:-51828054 | Msa1161650:five_prime_UTR |
| TCAACTGTGAACTCTATCAT+TGG | 0.422316 | 7_4:-51827112 | Msa1161650:CDS |
| CAACTGTGAACTCTATCATT+GGG | 0.422468 | 7_4:-51827111 | Msa1161650:CDS |
| CACGTAAAGCAGAACATCTA+TGG | 0.427275 | 7_4:+51826720 | None:intergenic |
| CAACAAGTTCGTGAGTGGTC+TGG | 0.428686 | 7_4:-51827707 | Msa1161650:CDS |
| ATAGATAGATAGAGAGAGAT+GGG | 0.432213 | 7_4:+51828003 | None:intergenic |
| AGGATAAGGTGGAGGGTTAA+GGG | 0.432229 | 7_4:-51828034 | Msa1161650:five_prime_UTR |
| GGAAGGGCCAAGACCTGTTA+TGG | 0.439208 | 7_4:-51826954 | Msa1161650:CDS |
| GTTGACAAGAATTTGATTGA+AGG | 0.442484 | 7_4:-51824992 | Msa1161650:CDS |
| CGTAAAGAGAAGCGTGGTGC+AGG | 0.446680 | 7_4:-51824693 | Msa1161650:CDS |
| CTATTACAAATTATAAAATC+AGG | 0.450237 | 7_4:-51826523 | Msa1161650:CDS |
| TCATCATAAGCCAATGCATC+TGG | 0.455523 | 7_4:+51826571 | None:intergenic |
| GATACTCCTGGTCTTATTGA+AGG | 0.474002 | 7_4:-51826893 | Msa1161650:CDS |
| AATTCATGACATACCTGAAA+GGG | 0.474503 | 7_4:+51827067 | None:intergenic |
| GTTCTCTCCACCAGATGCAT+TGG | 0.475208 | 7_4:-51826581 | Msa1161650:CDS |
| TTCTTGATCAGTGCTTCTAT+AGG | 0.477157 | 7_4:+51824804 | None:intergenic |
| AGTAGACAACTTGGATAAGT+TGG | 0.484708 | 7_4:-51826677 | Msa1161650:CDS |
| ATGTTCTGCTTTACGTGGAC+CGG | 0.489258 | 7_4:-51826714 | Msa1161650:CDS |
| CGCGACACCATAACAGGTCT+TGG | 0.490128 | 7_4:+51826947 | None:intergenic |
| AATCCTTGAAGAATCAAACT+TGG | 0.494583 | 7_4:+51824376 | None:intergenic |
| CAGTATACTCTGATAGGATA+AGG | 0.495140 | 7_4:-51828048 | Msa1161650:five_prime_UTR |
| ATCCTTGAAGAATCAAACTT+GGG | 0.496704 | 7_4:+51824377 | None:intergenic |
| GGTGACAGGTTCTTCCAAAT+GGG | 0.497063 | 7_4:-51825084 | Msa1161650:intron |
| CTGTTCTCGATCAAGACAAC+AGG | 0.497310 | 7_4:+51825234 | None:intergenic |
| ATGGTGTCGCGAGCAAGGGC+TGG | 0.505340 | 7_4:-51826935 | Msa1161650:CDS |
| TGCATCTGGTGGAGAGAACT+GGG | 0.514376 | 7_4:+51826585 | None:intergenic |
| CTCTATCATTGGGGAAAGAG+TGG | 0.517485 | 7_4:-51827101 | Msa1161650:CDS |
| CTACTCGATATGCATCTAAC+CGG | 0.517570 | 7_4:+51826695 | None:intergenic |
| CTCCTTGACCATACTTGTGA+TGG | 0.518881 | 7_4:-51827158 | Msa1161650:CDS |
| ATCAGGTGCATCCTTAAAGA+AGG | 0.519105 | 7_4:-51826506 | Msa1161650:CDS |
| CTGTTATGGTGTCGCGAGCA+AGG | 0.521500 | 7_4:-51826940 | Msa1161650:CDS |
| ACCATACTTGTGATGGGGAA+AGG | 0.525719 | 7_4:-51827151 | Msa1161650:CDS |
| AAAGGATGTGTCAGCAGTGA+TGG | 0.526871 | 7_4:+51824600 | None:intergenic |
| ACCTGTAGAGCAAATATGAC+AGG | 0.529529 | 7_4:+51824935 | None:intergenic |
| GTGATGGGGAAAGGCGGTGT+TGG | 0.534363 | 7_4:-51827142 | Msa1161650:CDS |
| ATACTCCTGGTCTTATTGAA+GGG | 0.535356 | 7_4:-51826892 | Msa1161650:CDS |
| CATCTATGGTCTTGTCCAGA+AGG | 0.535370 | 7_4:+51826734 | None:intergenic |
| TCCTTGACCATACTTGTGAT+GGG | 0.544068 | 7_4:-51827157 | Msa1161650:CDS |
| TGAAGAATCAAACTTGGGGA+TGG | 0.547200 | 7_4:+51824382 | None:intergenic |
| TCCCTATTAGCGTGCGGCAT+AGG | 0.550206 | 7_4:-51824531 | Msa1161650:three_prime_UTR |
| TACTCCTGGTCTTATTGAAG+GGG | 0.552263 | 7_4:-51826891 | Msa1161650:CDS |
| TGCATATCGAGTAGACAACT+TGG | 0.557200 | 7_4:-51826686 | Msa1161650:CDS |
| GATAGATAGATAGAGAGAGA+TGG | 0.557309 | 7_4:+51828002 | None:intergenic |
| TTTATCTTGAATAGTCGGAA+GGG | 0.557686 | 7_4:-51826970 | Msa1161650:intron |
| TGTTATGGTGTCGCGAGCAA+GGG | 0.561068 | 7_4:-51826939 | Msa1161650:CDS |
| TTTCTGTGATTGTTTGGACT+AGG | 0.564078 | 7_4:+51825044 | None:intergenic |
| CCCCATCACAAGTATGGTCA+AGG | 0.568031 | 7_4:+51827156 | None:intergenic |
| TTGAACATTATCGATACTCC+TGG | 0.568301 | 7_4:-51826905 | Msa1161650:CDS |
| ACTCTGATAGGATAAGGTGG+AGG | 0.573574 | 7_4:-51828042 | Msa1161650:five_prime_UTR |
| TGGCACTTGATATCATAAAA+CGG | 0.573744 | 7_4:-51826853 | Msa1161650:intron |
| TATTCCTTTGCCAAAACTGT+CGG | 0.575835 | 7_4:+51826639 | None:intergenic |
| CTCTGATAGGATAAGGTGGA+GGG | 0.581109 | 7_4:-51828041 | Msa1161650:five_prime_UTR |
| TTTGGGAAAACTCAAACAAG+AGG | 0.582314 | 7_4:-51827639 | Msa1161650:intron |
| CTCGATCAAGACAACAGGAA+TGG | 0.587478 | 7_4:+51825239 | None:intergenic |
| CAGAAAGAGACGCGTGAAGG+TGG | 0.593888 | 7_4:-51824729 | Msa1161650:CDS |
| TTGTCTTGATCGAGAACAGT+GGG | 0.594394 | 7_4:-51825230 | Msa1161650:CDS |
| CATAGATGTTCTGCTTTACG+TGG | 0.595198 | 7_4:-51826719 | Msa1161650:CDS |
| CAATTCATGACATACCTGAA+AGG | 0.595623 | 7_4:+51827066 | None:intergenic |
| TCATAAGCCAATGCATCTGG+TGG | 0.606653 | 7_4:+51826574 | None:intergenic |
| TCTTGGGAGACACGTGATGT+CGG | 0.608203 | 7_4:-51824756 | Msa1161650:CDS |
| GGAAGAAATGGTTACCGGAA+GGG | 0.613712 | 7_4:+51827972 | None:intergenic |
| ACATCACGTGTCTCCCAAGA+GGG | 0.623468 | 7_4:+51824759 | None:intergenic |
| TATACTCTGATAGGATAAGG+TGG | 0.626587 | 7_4:-51828045 | Msa1161650:five_prime_UTR |
| CATCTCAACAAGTTCGTGAG+TGG | 0.631583 | 7_4:-51827712 | Msa1161650:CDS |
| TGGCAAAGGAATATGGAACA+AGG | 0.632914 | 7_4:-51826629 | Msa1161650:CDS |
| TCCTTGAAGAATCAAACTTG+GGG | 0.635761 | 7_4:+51824378 | None:intergenic |
| AACTGTGAACTCTATCATTG+GGG | 0.637041 | 7_4:-51827110 | Msa1161650:CDS |
| GTGATTGTTTGGACTAGGTG+AGG | 0.644553 | 7_4:+51825049 | None:intergenic |
| CTCCTGGTCTTATTGAAGGG+GGG | 0.648814 | 7_4:-51826889 | Msa1161650:CDS |
| ACTCCTGGTCTTATTGAAGG+GGG | 0.649298 | 7_4:-51826890 | Msa1161650:CDS |
| CCTTGACCATACTTGTGATG+GGG | 0.651438 | 7_4:-51827156 | Msa1161650:CDS |
| GTTGTCTTGATCGAGAACAG+TGG | 0.669136 | 7_4:-51825231 | Msa1161650:CDS |
| GACATCACGTGTCTCCCAAG+AGG | 0.672049 | 7_4:+51824758 | None:intergenic |
| GTTCAGAAAGAGACGCGTGA+AGG | 0.686151 | 7_4:-51824732 | Msa1161650:CDS |
| CTGCAATCCCTATTAGCGTG+CGG | 0.688503 | 7_4:-51824537 | Msa1161650:three_prime_UTR |
| ATACTTGTGATGGGGAAAGG+CGG | 0.699216 | 7_4:-51827148 | Msa1161650:CDS |
| ATAAGGTGGAGGGTTAAGGG+CGG | 0.713125 | 7_4:-51828031 | Msa1161650:five_prime_UTR |
| TCTTGATCGAGAACAGTGGG+AGG | 0.718297 | 7_4:-51825227 | Msa1161650:CDS |
| GGACCGAATCCAAATCAGAG+AGG | 0.731341 | 7_4:-51824971 | Msa1161650:CDS |
| GATACGCGTAAAGAGAAGCG+TGG | 0.744582 | 7_4:-51824699 | Msa1161650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGATTATATAAATAAAAT+TGG | + | chr7_4:51824508-51824527 | None:intergenic | 10.0% |
| !! | TTCAGAATTTATTAAAAAAT+TGG | - | chr7_4:51826243-51826262 | Msa1161650:intron | 10.0% |
| !! | TGTTCATTATACTAATTATT+AGG | - | chr7_4:51824599-51824618 | Msa1161650:three_prime_UTR | 15.0% |
| !! | AAGAATTTGTATTTAAAAGA+TGG | - | chr7_4:51825166-51825185 | Msa1161650:intron | 15.0% |
| !! | AGAATTTGTATTTAAAAGAT+GGG | - | chr7_4:51825167-51825186 | Msa1161650:intron | 15.0% |
| !! | CTATTACAAATTATAAAATC+AGG | - | chr7_4:51825883-51825902 | Msa1161650:intron | 15.0% |
| !! | TAATAAATTCTGAATTTCAA+GGG | + | chr7_4:51826237-51826256 | None:intergenic | 15.0% |
| !! | TTAATAAATTCTGAATTTCA+AGG | + | chr7_4:51826238-51826257 | None:intergenic | 15.0% |
| !! | AATATATAAGTAAAACTAGA+AGG | + | chr7_4:51826475-51826494 | None:intergenic | 15.0% |
| !!! | TTGTTAAGTTTTAGAAAAAT+TGG | - | chr7_4:51826633-51826652 | Msa1161650:CDS | 15.0% |
| !!! | AAAATTACTTTATTTGTGAA+TGG | - | chr7_4:51826936-51826955 | Msa1161650:CDS | 15.0% |
| !!! | ATGTTTCTAGTTTTGTTAAA+GGG | - | chr7_4:51824819-51824838 | Msa1161650:CDS | 20.0% |
| !! | TTAAAAGTAAAACAAAACCA+AGG | + | chr7_4:51825119-51825138 | None:intergenic | 20.0% |
| !!! | CTATTTTTATCTTGAATAGT+CGG | - | chr7_4:51825431-51825450 | Msa1161650:intron | 20.0% |
| !!! | CGTGAATCTTTTATTTTTTT+GGG | - | chr7_4:51825606-51825625 | Msa1161650:intron | 20.0% |
| !!! | GTGAATCTTTTATTTTTTTG+GGG | - | chr7_4:51825607-51825626 | Msa1161650:intron | 20.0% |
| !! | AATAAATTCTGAATTTCAAG+GGG | + | chr7_4:51826236-51826255 | None:intergenic | 20.0% |
| !!! | ATTTTTCTCATTGAATATCT+AGG | + | chr7_4:51826667-51826686 | None:intergenic | 20.0% |
| !!! | TTATTACTTGCTTTAAAAGT+AGG | - | chr7_4:51826975-51826994 | Msa1161650:intron | 20.0% |
| !!! | TATTACTTGCTTTAAAAGTA+GGG | - | chr7_4:51826976-51826995 | Msa1161650:intron | 20.0% |
| !! | GGAAGAATAAAATAAACAAA+AGG | + | chr7_4:51827555-51827574 | None:intergenic | 20.0% |
| ! | GAAACAATTACTAACAATAG+TGG | + | chr7_4:51824569-51824588 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGTTCTGTTTG+TGG | - | chr7_4:51824652-51824671 | Msa1161650:three_prime_UTR | 25.0% |
| !!! | CATGTTTCTAGTTTTGTTAA+AGG | - | chr7_4:51824818-51824837 | Msa1161650:CDS | 25.0% |
| !! | ATTTTTCGTAATACCAACTA+TGG | - | chr7_4:51824952-51824971 | Msa1161650:CDS | 25.0% |
| !!! | TACCAACTATGGTTTTAAAT+TGG | - | chr7_4:51824963-51824982 | Msa1161650:CDS | 25.0% |
| !!! | ACCAACTATGGTTTTAAATT+GGG | - | chr7_4:51824964-51824983 | Msa1161650:CDS | 25.0% |
| !!! | GCGTGAATCTTTTATTTTTT+TGG | - | chr7_4:51825605-51825624 | Msa1161650:intron | 25.0% |
| !! | AAACTGAGATGTATTTTTCA+AGG | + | chr7_4:51825965-51825984 | None:intergenic | 25.0% |
| ! | TTTGAAAGTTAAAACTGTCA+AGG | - | chr7_4:51825983-51826002 | Msa1161650:intron | 25.0% |
| ! | CAATTATAAGAATTGAACCA+GGG | - | chr7_4:51826266-51826285 | Msa1161650:intron | 25.0% |
| ! | ATAAGTAAAACTAGAAGGAA+AGG | + | chr7_4:51826470-51826489 | None:intergenic | 25.0% |
| ! | CAATAAATGATGCAAAGTAT+GGG | + | chr7_4:51826514-51826533 | None:intergenic | 25.0% |
| ! | TCAATAAATGATGCAAAGTA+TGG | + | chr7_4:51826515-51826534 | None:intergenic | 25.0% |
| ! | CTAAACTAAGTTATTACACA+CGG | - | chr7_4:51826851-51826870 | Msa1161650:intron | 25.0% |
| !!! | CATTTAGGGTATTTGTTTTA+TGG | - | chr7_4:51826877-51826896 | Msa1161650:CDS | 25.0% |
| ! | CAAAAATGAAACTGATGAAA+AGG | - | chr7_4:51827207-51827226 | Msa1161650:intron | 25.0% |
| ! | TCAGATTAAGCAAGATAAAT+GGG | + | chr7_4:51827284-51827303 | None:intergenic | 25.0% |
| ! | ATCAGATTAAGCAAGATAAA+TGG | + | chr7_4:51827285-51827304 | None:intergenic | 25.0% |
| ! | TCAACAAAACAGATACAAAA+AGG | + | chr7_4:51827827-51827846 | None:intergenic | 25.0% |
| !!! | TCTGTTTTGTTGAATTTAGT+TGG | - | chr7_4:51827834-51827853 | Msa1161650:intron | 25.0% |
| ! | TTATGTGAATTCAGTTTGAT+AGG | - | chr7_4:51827929-51827948 | Msa1161650:intron | 25.0% |
| ! | TTTGATTCTTCAAGGATTTA+TGG | - | chr7_4:51828035-51828054 | Msa1161650:five_prime_UTR | 25.0% |
| ! | TTGATTCTTCAAGGATTTAT+GGG | - | chr7_4:51828036-51828055 | Msa1161650:five_prime_UTR | 25.0% |
| !!! | CAGTTGCTTTATATTTTGAA+TGG | - | chr7_4:51828092-51828111 | Msa1161650:five_prime_UTR | 25.0% |
| ATAGATAGATAGAGAGAGAT+GGG | + | chr7_4:51824406-51824425 | None:intergenic | 30.0% | |
| ! | AACCAAATTGCTTGAACTTT+TGG | - | chr7_4:51824749-51824768 | Msa1161650:CDS | 30.0% |
| ! | ACCAAATTGCTTGAACTTTT+GGG | - | chr7_4:51824750-51824769 | Msa1161650:CDS | 30.0% |
| ! | CAGACCAAAACTTCAATTTT+AGG | - | chr7_4:51824902-51824921 | Msa1161650:intron | 30.0% |
| ! | TTCGCCTAAAATTGAAGTTT+TGG | + | chr7_4:51824909-51824928 | None:intergenic | 30.0% |
| !!! | CCAACTATGGTTTTAAATTG+GGG | - | chr7_4:51824965-51824984 | Msa1161650:CDS | 30.0% |
| !!! | CAACTATGGTTTTAAATTGG+GGG | - | chr7_4:51824966-51824985 | Msa1161650:CDS | 30.0% |
| !!! | GTTTTTTTTGTTTCCGCTTT+GGG | - | chr7_4:51825189-51825208 | Msa1161650:intron | 30.0% |
| AATTCATGACATACCTGAAA+GGG | + | chr7_4:51825342-51825361 | None:intergenic | 30.0% | |
| ! | TTTTATCTTGAATAGTCGGA+AGG | - | chr7_4:51825435-51825454 | Msa1161650:intron | 30.0% |
| TTTATCTTGAATAGTCGGAA+GGG | - | chr7_4:51825436-51825455 | Msa1161650:intron | 30.0% | |
| TGGCACTTGATATCATAAAA+CGG | - | chr7_4:51825553-51825572 | Msa1161650:intron | 30.0% | |
| !!! | GAGATGTATTTTTCAAGGAT+AGG | + | chr7_4:51825960-51825979 | None:intergenic | 30.0% |
| AAATCCAAATACTTCGATTC+CGG | + | chr7_4:51826011-51826030 | None:intergenic | 30.0% | |
| !!! | GTATTTGGATTTTAAGTTCC+TGG | - | chr7_4:51826019-51826038 | Msa1161650:intron | 30.0% |
| ! | TGGATTTTATGATCCATGAA+CGG | - | chr7_4:51826039-51826058 | Msa1161650:intron | 30.0% |
| !! | AAGTCTGCTTTTGTAAAAAG+TGG | - | chr7_4:51826110-51826129 | Msa1161650:intron | 30.0% |
| GTAAATAAAGATTCATGCCT+TGG | - | chr7_4:51826184-51826203 | Msa1161650:intron | 30.0% | |
| GCAATTATAAGAATTGAACC+AGG | - | chr7_4:51826265-51826284 | Msa1161650:intron | 30.0% | |
| TAGTTAGTAACTAGATGCTA+TGG | + | chr7_4:51826379-51826398 | None:intergenic | 30.0% | |
| CTTTGCATCATTTATTGATC+TGG | - | chr7_4:51826517-51826536 | Msa1161650:CDS | 30.0% | |
| ! | CTCATTGAATATCTAGGTTT+TGG | + | chr7_4:51826661-51826680 | None:intergenic | 30.0% |
| AAATTCAACAGAGAACCAAA+AGG | + | chr7_4:51826779-51826798 | None:intergenic | 30.0% | |
| !!! | TTTGGTTCTCTGTTGAATTT+TGG | - | chr7_4:51826779-51826798 | Msa1161650:intron | 30.0% |
| !! | TTGGTTCTCTGTTGAATTTT+GGG | - | chr7_4:51826780-51826799 | Msa1161650:intron | 30.0% |
| TATTACACACGGTTTCATTT+AGG | - | chr7_4:51826862-51826881 | Msa1161650:CDS | 30.0% | |
| ATTACACACGGTTTCATTTA+GGG | - | chr7_4:51826863-51826882 | Msa1161650:CDS | 30.0% | |
| !!! | TTTGTTTTATGGATGTTCTG+TGG | - | chr7_4:51826888-51826907 | Msa1161650:CDS | 30.0% |
| !! | TTGTTTTATGGATGTTCTGT+GGG | - | chr7_4:51826889-51826908 | Msa1161650:CDS | 30.0% |
| AATGAAACTGATGAAAAGGT+TGG | - | chr7_4:51827211-51827230 | Msa1161650:intron | 30.0% | |
| ATGCAATTTCTGTGATTGTT+TGG | + | chr7_4:51827371-51827390 | None:intergenic | 30.0% | |
| GTTGACAAGAATTTGATTGA+AGG | - | chr7_4:51827414-51827433 | Msa1161650:intron | 30.0% | |
| ! | CATATTTTTCCTCTCTGATT+TGG | + | chr7_4:51827447-51827466 | None:intergenic | 30.0% |
| CAAATCAGAGAGGAAAAATA+TGG | - | chr7_4:51827445-51827464 | Msa1161650:intron | 30.0% | |
| ! | GTTTTCTCTTTATAAACGTC+AGG | - | chr7_4:51827521-51827540 | Msa1161650:intron | 30.0% |
| !!! | GGGATGGTTTTAATAGTTAA+AGG | + | chr7_4:51828011-51828030 | None:intergenic | 30.0% |
| ATCCTTGAAGAATCAAACTT+GGG | + | chr7_4:51828032-51828051 | None:intergenic | 30.0% | |
| AATCCTTGAAGAATCAAACT+TGG | + | chr7_4:51828033-51828052 | None:intergenic | 30.0% | |
| TCGAAACAGTATACTCTGAT+AGG | - | chr7_4:51824352-51824371 | Msa1161650:three_prime_UTR | 35.0% | |
| CAGTATACTCTGATAGGATA+AGG | - | chr7_4:51824358-51824377 | Msa1161650:three_prime_UTR | 35.0% | |
| TATACTCTGATAGGATAAGG+TGG | - | chr7_4:51824361-51824380 | Msa1161650:three_prime_UTR | 35.0% | |
| GATAGATAGATAGAGAGAGA+TGG | + | chr7_4:51824407-51824426 | None:intergenic | 35.0% | |
| AATTGGGAAGAAATGGTTAC+CGG | + | chr7_4:51824442-51824461 | None:intergenic | 35.0% | |
| ! | GTTGATGAATTGGGAAGAAA+TGG | + | chr7_4:51824449-51824468 | None:intergenic | 35.0% |
| !! | AAGACAACGGTTGATGAATT+GGG | + | chr7_4:51824458-51824477 | None:intergenic | 35.0% |
| !! | AAAGACAACGGTTGATGAAT+TGG | + | chr7_4:51824459-51824478 | None:intergenic | 35.0% |
| GTGAAAGTGAAGAAAGACAA+CGG | + | chr7_4:51824471-51824490 | None:intergenic | 35.0% | |
| GTTGAGAGAAGTAAAATGGT+GGG | + | chr7_4:51824547-51824566 | None:intergenic | 35.0% | |
| AGTGGTTGAGAGAAGTAAAA+TGG | + | chr7_4:51824551-51824570 | None:intergenic | 35.0% | |
| TGTTCTGTTTGTGGAATTAG+TGG | - | chr7_4:51824661-51824680 | Msa1161650:exon | 35.0% | |
| GTGGAATTAGTGGAACATTA+TGG | - | chr7_4:51824671-51824690 | Msa1161650:exon | 35.0% | |
| TCCCAAAAGTTCAAGCAATT+TGG | + | chr7_4:51824754-51824773 | None:intergenic | 35.0% | |
| TTTGGGAAAACTCAAACAAG+AGG | - | chr7_4:51824767-51824786 | Msa1161650:CDS | 35.0% | |
| ACTGTCTGCAATTGTGATTA+TGG | - | chr7_4:51824850-51824869 | Msa1161650:intron | 35.0% | |
| ! | CCCCAATTTAAAACCATAGT+TGG | + | chr7_4:51824968-51824987 | None:intergenic | 35.0% |
| AGACCTAAAATCCTGTATGT+TGG | - | chr7_4:51825012-51825031 | Msa1161650:CDS | 35.0% | |
| ! | CAACCAACATACAGGATTTT+AGG | + | chr7_4:51825018-51825037 | None:intergenic | 35.0% |
| ! | ATGTTGGTTGTTGTTGCAAT+TGG | - | chr7_4:51825028-51825047 | Msa1161650:CDS | 35.0% |
| ! | CCAAGGTTTTTAATCGTGAT+TGG | + | chr7_4:51825102-51825121 | None:intergenic | 35.0% |
| CCAATCACGATTAAAAACCT+TGG | - | chr7_4:51825099-51825118 | Msa1161650:intron | 35.0% | |
| !!! | GGTTTTTTTTGTTTCCGCTT+TGG | - | chr7_4:51825188-51825207 | Msa1161650:intron | 35.0% |
| TCAACTGTGAACTCTATCAT+TGG | - | chr7_4:51825294-51825313 | Msa1161650:intron | 35.0% | |
| CAACTGTGAACTCTATCATT+GGG | - | chr7_4:51825295-51825314 | Msa1161650:intron | 35.0% | |
| AACTGTGAACTCTATCATTG+GGG | - | chr7_4:51825296-51825315 | Msa1161650:intron | 35.0% | |
| CAATTCATGACATACCTGAA+AGG | + | chr7_4:51825343-51825362 | None:intergenic | 35.0% | |
| ! | CTTTCAGGTATGTCATGAAT+TGG | - | chr7_4:51825341-51825360 | Msa1161650:intron | 35.0% |
| TTGAACATTATCGATACTCC+TGG | - | chr7_4:51825501-51825520 | Msa1161650:intron | 35.0% | |
| !! | ATACTCCTGGTCTTATTGAA+GGG | - | chr7_4:51825514-51825533 | Msa1161650:intron | 35.0% |
| ! | AAACGGTATGCTTTTATGTC+TGG | - | chr7_4:51825570-51825589 | Msa1161650:intron | 35.0% |
| GAAGGAAGCTACAAGAAAAA+GGG | + | chr7_4:51825657-51825676 | None:intergenic | 35.0% | |
| AGAAGGAAGCTACAAGAAAA+AGG | + | chr7_4:51825658-51825677 | None:intergenic | 35.0% | |
| ! | TTTTTCTTGTAGCTTCCTTC+TGG | - | chr7_4:51825657-51825676 | Msa1161650:intron | 35.0% |
| AGTAGACAACTTGGATAAGT+TGG | - | chr7_4:51825729-51825748 | Msa1161650:intron | 35.0% | |
| ! | AAAGCTATTACCGACAGTTT+TGG | - | chr7_4:51825757-51825776 | Msa1161650:intron | 35.0% |
| TATTCCTTTGCCAAAACTGT+CGG | + | chr7_4:51825770-51825789 | None:intergenic | 35.0% | |
| !! | ACAGTTTTGGCAAAGGAATA+TGG | - | chr7_4:51825770-51825789 | Msa1161650:intron | 35.0% |
| CTGAACATCATCCTTCTTTA+AGG | + | chr7_4:51825914-51825933 | None:intergenic | 35.0% | |
| CTTAAAGAAGGATGATGTTC+AGG | - | chr7_4:51825912-51825931 | Msa1161650:intron | 35.0% | |
| GTTCATGGATCATAAAATCC+AGG | + | chr7_4:51826040-51826059 | None:intergenic | 35.0% | |
| ! | GGATTTTATGATCCATGAAC+GGG | - | chr7_4:51826040-51826059 | Msa1161650:intron | 35.0% |
| ! | TGGATTTGAAACTGTTGAAC+TGG | - | chr7_4:51826130-51826149 | Msa1161650:intron | 35.0% |
| !! | TCCATAAATGACTTGGTGAT+GGG | + | chr7_4:51826314-51826333 | None:intergenic | 35.0% |
| !! | ATCCATAAATGACTTGGTGA+TGG | + | chr7_4:51826315-51826334 | None:intergenic | 35.0% |
| ACAGAGATCCATAAATGACT+TGG | + | chr7_4:51826321-51826340 | None:intergenic | 35.0% | |
| ! | TGGATCTCTGTTTCTTAGTA+TGG | - | chr7_4:51826330-51826349 | Msa1161650:intron | 35.0% |
| CAAAGATTGAGGATGAAATG+TGG | + | chr7_4:51826588-51826607 | None:intergenic | 35.0% | |
| CAGTTATGAACTAGCACAAT+GGG | + | chr7_4:51826691-51826710 | None:intergenic | 35.0% | |
| ACAGTTATGAACTAGCACAA+TGG | + | chr7_4:51826692-51826711 | None:intergenic | 35.0% | |
| TAATAAAGAAGGCTAGTAGC+AGG | + | chr7_4:51826722-51826741 | None:intergenic | 35.0% | |
| CTCAAAAAAAAGAGAGAACC+TGG | + | chr7_4:51827008-51827027 | None:intergenic | 35.0% | |
| !!! | GGTTCTCTCTTTTTTTTGAG+AGG | - | chr7_4:51827008-51827027 | Msa1161650:intron | 35.0% |
| ! | GTGACTCATAATTTTCATGC+TGG | - | chr7_4:51827112-51827131 | Msa1161650:CDS | 35.0% |
| ! | TTTGCCTTTTTCTTAACCCT+AGG | - | chr7_4:51827138-51827157 | Msa1161650:CDS | 35.0% |
| !! | GGTTGATAGAAGAGGATATA+AGG | + | chr7_4:51827263-51827282 | None:intergenic | 35.0% |
| !! | GATAAATGGGTTGATAGAAG+AGG | + | chr7_4:51827271-51827290 | None:intergenic | 35.0% |
| TGATTGAGAAAATGTGTGCA+TGG | - | chr7_4:51827301-51827320 | Msa1161650:intron | 35.0% | |
| TTTCTGTGATTGTTTGGACT+AGG | + | chr7_4:51827365-51827384 | None:intergenic | 35.0% | |
| !! | TTTCCTCTCTGATTTGGATT+CGG | + | chr7_4:51827441-51827460 | None:intergenic | 35.0% |
| ! | AGGTAAGCTTTTGAACTTTG+AGG | - | chr7_4:51827490-51827509 | Msa1161650:intron | 35.0% |
| TTCTTGATCAGTGCTTCTAT+AGG | + | chr7_4:51827605-51827624 | None:intergenic | 35.0% | |
| TAATGAGAAAAAGCCCTCTT+GGG | - | chr7_4:51827634-51827653 | Msa1161650:intron | 35.0% | |
| GGAATTTGTCTGTGATTTAG+AGG | - | chr7_4:51827896-51827915 | Msa1161650:intron | 35.0% | |
| TCCTTGAAGAATCAAACTTG+GGG | + | chr7_4:51828031-51828050 | None:intergenic | 35.0% | |
| AAGGATTTATGGGTCTTCAT+TGG | - | chr7_4:51828046-51828065 | Msa1161650:five_prime_UTR | 35.0% | |
| GGTTGAGAGAAGTAAAATGG+TGG | + | chr7_4:51824548-51824567 | None:intergenic | 40.0% | |
| !! | AGCAATTTGGTTTGTGTAGC+AGG | + | chr7_4:51824741-51824760 | None:intergenic | 40.0% |
| AAATTGGGGGTGATGTATTG+TGG | - | chr7_4:51824979-51824998 | Msa1161650:CDS | 40.0% | |
| TGCAACAACAACCAACATAC+AGG | + | chr7_4:51825026-51825045 | None:intergenic | 40.0% | |
| TGTTGTTGCAATTGGAGTTG+CGG | - | chr7_4:51825036-51825055 | Msa1161650:CDS | 40.0% | |
| ATTGGTTGCATTGCGAAAGT+TGG | + | chr7_4:51825084-51825103 | None:intergenic | 40.0% | |
| TCCTTGACCATACTTGTGAT+GGG | - | chr7_4:51825249-51825268 | Msa1161650:CDS | 40.0% | |
| GAATTGGTACTTTCCTGTGA+TGG | - | chr7_4:51825357-51825376 | Msa1161650:intron | 40.0% | |
| !! | GATACTCCTGGTCTTATTGA+AGG | - | chr7_4:51825513-51825532 | Msa1161650:intron | 40.0% |
| !! | TACTCCTGGTCTTATTGAAG+GGG | - | chr7_4:51825515-51825534 | Msa1161650:intron | 40.0% |
| CACGTAAAGCAGAACATCTA+TGG | + | chr7_4:51825689-51825708 | None:intergenic | 40.0% | |
| CATAGATGTTCTGCTTTACG+TGG | - | chr7_4:51825687-51825706 | Msa1161650:intron | 40.0% | |
| CTACTCGATATGCATCTAAC+CGG | + | chr7_4:51825714-51825733 | None:intergenic | 40.0% | |
| TGCATATCGAGTAGACAACT+TGG | - | chr7_4:51825720-51825739 | Msa1161650:intron | 40.0% | |
| !! | ATTACCGACAGTTTTGGCAA+AGG | - | chr7_4:51825763-51825782 | Msa1161650:intron | 40.0% |
| TGGCAAAGGAATATGGAACA+AGG | - | chr7_4:51825777-51825796 | Msa1161650:intron | 40.0% | |
| TCATCATAAGCCAATGCATC+TGG | + | chr7_4:51825838-51825857 | None:intergenic | 40.0% | |
| ATCAGGTGCATCCTTAAAGA+AGG | - | chr7_4:51825900-51825919 | Msa1161650:intron | 40.0% | |
| AGTTAAAACTGTCAAGGCAC+CGG | - | chr7_4:51825989-51826008 | Msa1161650:intron | 40.0% | |
| ATCCATGAACGGGAATACAT+TGG | - | chr7_4:51826050-51826069 | Msa1161650:intron | 40.0% | |
| AACCAATGTATTCCCGTTCA+TGG | + | chr7_4:51826055-51826074 | None:intergenic | 40.0% | |
| ATGAACGGGAATACATTGGT+TGG | - | chr7_4:51826054-51826073 | Msa1161650:intron | 40.0% | |
| ! | CAATTCATTGGTTAACCAGG+TGG | + | chr7_4:51826080-51826099 | None:intergenic | 40.0% |
| CACCTGGTTAACCAATGAAT+TGG | - | chr7_4:51826078-51826097 | Msa1161650:intron | 40.0% | |
| ! | GACCAATTCATTGGTTAACC+AGG | + | chr7_4:51826083-51826102 | None:intergenic | 40.0% |
| TAACCAATGAATTGGTCCAG+TGG | - | chr7_4:51826086-51826105 | Msa1161650:intron | 40.0% | |
| ! | ATCACATTTTATGATCGCCC+TGG | + | chr7_4:51826286-51826305 | None:intergenic | 40.0% |
| AGGGCGATCATAAAATGTGA+TGG | - | chr7_4:51826285-51826304 | Msa1161650:intron | 40.0% | |
| TCCCATCACCAAGTCATTTA+TGG | - | chr7_4:51826310-51826329 | Msa1161650:intron | 40.0% | |
| ACAACATCCGCATAAGTAGA+GGG | + | chr7_4:51826617-51826636 | None:intergenic | 40.0% | |
| AACAACATCCGCATAAGTAG+AGG | + | chr7_4:51826618-51826637 | None:intergenic | 40.0% | |
| AACGGGCAGAGTAATAAAGA+AGG | + | chr7_4:51826733-51826752 | None:intergenic | 40.0% | |
| ACTCTTTACGGAGAGATCAA+CGG | + | chr7_4:51826751-51826770 | None:intergenic | 40.0% | |
| CAAAAGGCTGCTACTCTTTA+CGG | + | chr7_4:51826763-51826782 | None:intergenic | 40.0% | |
| ACAGCATTCTTGCATTCTCA+TGG | - | chr7_4:51826814-51826833 | Msa1161650:intron | 40.0% | |
| CAGCATTCTTGCATTCTCAT+GGG | - | chr7_4:51826815-51826834 | Msa1161650:intron | 40.0% | |
| TTAAAAGTAGGGTTCTGTCC+AGG | - | chr7_4:51826987-51827006 | Msa1161650:intron | 40.0% | |
| GAAGCCTAGGGTTAAGAAAA+AGG | + | chr7_4:51827145-51827164 | None:intergenic | 40.0% | |
| TTGTCTTGATCGAGAACAGT+GGG | - | chr7_4:51827176-51827195 | Msa1161650:intron | 40.0% | |
| ! | AAGGTTGGAGATTTGCTTCA+TGG | - | chr7_4:51827226-51827245 | Msa1161650:intron | 40.0% |
| TTCTTCCAAATGGGATTGCT+TGG | - | chr7_4:51827331-51827350 | Msa1161650:intron | 40.0% | |
| TCCTGTCATATTTGCTCTAC+AGG | - | chr7_4:51827470-51827489 | Msa1161650:intron | 40.0% | |
| ACCTGTAGAGCAAATATGAC+AGG | + | chr7_4:51827474-51827493 | None:intergenic | 40.0% | |
| TTCTTCCTATCTGCAGTTCT+TGG | - | chr7_4:51827568-51827587 | Msa1161650:intron | 40.0% | |
| GAAAACCAAGAACTGCAGAT+AGG | + | chr7_4:51827576-51827595 | None:intergenic | 40.0% | |
| CTAATGAGAAAAAGCCCTCT+TGG | - | chr7_4:51827633-51827652 | Msa1161650:intron | 40.0% | |
| ! | CTTCACAGATTTTCACGAGA+AGG | + | chr7_4:51827780-51827799 | None:intergenic | 40.0% |
| TGAAGAATCAAACTTGGGGA+TGG | + | chr7_4:51828027-51828046 | None:intergenic | 40.0% | |
| TCCCCAAGTTTGATTCTTCA+AGG | - | chr7_4:51828027-51828046 | Msa1161650:five_prime_UTR | 40.0% | |
| ACTCTGATAGGATAAGGTGG+AGG | - | chr7_4:51824364-51824383 | Msa1161650:three_prime_UTR | 45.0% | |
| CTCTGATAGGATAAGGTGGA+GGG | - | chr7_4:51824365-51824384 | Msa1161650:three_prime_UTR | 45.0% | |
| TAGGATAAGGTGGAGGGTTA+AGG | - | chr7_4:51824371-51824390 | Msa1161650:three_prime_UTR | 45.0% | |
| AGGATAAGGTGGAGGGTTAA+GGG | - | chr7_4:51824372-51824391 | Msa1161650:three_prime_UTR | 45.0% | |
| GGAAGAAATGGTTACCGGAA+GGG | + | chr7_4:51824437-51824456 | None:intergenic | 45.0% | |
| CATCTCAACAAGTTCGTGAG+TGG | - | chr7_4:51824694-51824713 | Msa1161650:CDS | 45.0% | |
| !! | TTGTTTCCGCTTTGGGAACT+TGG | - | chr7_4:51825196-51825215 | Msa1161650:intron | 45.0% |
| !! | AACTTGGTGCATGTTTCGTC+TGG | - | chr7_4:51825212-51825231 | Msa1161650:CDS | 45.0% |
| CTCCTTGACCATACTTGTGA+TGG | - | chr7_4:51825248-51825267 | Msa1161650:CDS | 45.0% | |
| CCTTGACCATACTTGTGATG+GGG | - | chr7_4:51825250-51825269 | Msa1161650:intron | 45.0% | |
| ! | ACCATACTTGTGATGGGGAA+AGG | - | chr7_4:51825255-51825274 | Msa1161650:intron | 45.0% |
| ! | ATACTTGTGATGGGGAAAGG+CGG | - | chr7_4:51825258-51825277 | Msa1161650:intron | 45.0% |
| CTCTATCATTGGGGAAAGAG+TGG | - | chr7_4:51825305-51825324 | Msa1161650:intron | 45.0% | |
| ! | ACTTTCCTGTGATGGTTTGC+AGG | - | chr7_4:51825365-51825384 | Msa1161650:intron | 45.0% |
| ! | CTTTCCTGTGATGGTTTGCA+GGG | - | chr7_4:51825366-51825385 | Msa1161650:intron | 45.0% |
| !! | ACTCCTGGTCTTATTGAAGG+GGG | - | chr7_4:51825516-51825535 | Msa1161650:intron | 45.0% |
| ! | AGGGGGGTACATCAATGATA+TGG | - | chr7_4:51825533-51825552 | Msa1161650:intron | 45.0% |
| !! | CATCTATGGTCTTGTCCAGA+AGG | + | chr7_4:51825675-51825694 | None:intergenic | 45.0% |
| ATGTTCTGCTTTACGTGGAC+CGG | - | chr7_4:51825692-51825711 | Msa1161650:intron | 45.0% | |
| TCATAAGCCAATGCATCTGG+TGG | + | chr7_4:51825835-51825854 | None:intergenic | 45.0% | |
| TTGCCACTGGACCAATTCAT+TGG | + | chr7_4:51826092-51826111 | None:intergenic | 45.0% | |
| TACAAAAGCAGACTTGCCAC+TGG | + | chr7_4:51826105-51826124 | None:intergenic | 45.0% | |
| GTGGTGAATCGAAGTTGAAC+TGG | + | chr7_4:51826569-51826588 | None:intergenic | 45.0% | |
| GAGGGAAAGGTCAAAGATTG+AGG | + | chr7_4:51826599-51826618 | None:intergenic | 45.0% | |
| GACCTTTCCCTCTACTTATG+CGG | - | chr7_4:51826607-51826626 | Msa1161650:CDS | 45.0% | |
| ATCCGCATAAGTAGAGGGAA+AGG | + | chr7_4:51826612-51826631 | None:intergenic | 45.0% | |
| CTCTTTACGGAGAGATCAAC+GGG | + | chr7_4:51826750-51826769 | None:intergenic | 45.0% | |
| ! | CGTAAAGAGTAGCAGCCTTT+TGG | - | chr7_4:51826761-51826780 | Msa1161650:intron | 45.0% |
| CTCGATCAAGACAACAGGAA+TGG | + | chr7_4:51827170-51827189 | None:intergenic | 45.0% | |
| CTGTTCTCGATCAAGACAAC+AGG | + | chr7_4:51827175-51827194 | None:intergenic | 45.0% | |
| GTTGTCTTGATCGAGAACAG+TGG | - | chr7_4:51827175-51827194 | Msa1161650:intron | 45.0% | |
| GAAAATGTGTGCATGGTGAC+AGG | - | chr7_4:51827308-51827327 | Msa1161650:intron | 45.0% | |
| TGGTGACAGGTTCTTCCAAA+TGG | - | chr7_4:51827321-51827340 | Msa1161650:intron | 45.0% | |
| GGTGACAGGTTCTTCCAAAT+GGG | - | chr7_4:51827322-51827341 | Msa1161650:intron | 45.0% | |
| GGAATCCAAGCAATCCCATT+TGG | + | chr7_4:51827339-51827358 | None:intergenic | 45.0% | |
| ! | GTGATTGTTTGGACTAGGTG+AGG | + | chr7_4:51827360-51827379 | None:intergenic | 45.0% |
| AAAGGATGTGTCAGCAGTGA+TGG | + | chr7_4:51827809-51827828 | None:intergenic | 45.0% | |
| !! | ATGATTATATAAATAAAATT+GGG | + | chr7_4:51824507-51824526 | None:intergenic | 5.0% |
| ATAAGGTGGAGGGTTAAGGG+CGG | - | chr7_4:51824375-51824394 | Msa1161650:three_prime_UTR | 50.0% | |
| ATCTATCGTCGCTTCCCTTC+CGG | - | chr7_4:51824420-51824439 | Msa1161650:three_prime_UTR | 50.0% | |
| GGGAAGAAATGGTTACCGGA+AGG | + | chr7_4:51824438-51824457 | None:intergenic | 50.0% | |
| CAACAAGTTCGTGAGTGGTC+TGG | - | chr7_4:51824699-51824718 | Msa1161650:CDS | 50.0% | |
| CATGCACCAAGTTCCCAAAG+CGG | + | chr7_4:51825205-51825224 | None:intergenic | 50.0% | |
| GTGCATGTTTCGTCTGGCAT+AGG | - | chr7_4:51825218-51825237 | Msa1161650:CDS | 50.0% | |
| CCCCATCACAAGTATGGTCA+AGG | + | chr7_4:51825253-51825272 | None:intergenic | 50.0% | |
| GCCTTTCCCCATCACAAGTA+TGG | + | chr7_4:51825259-51825278 | None:intergenic | 50.0% | |
| ! | GGTGACGATTAGTCCCTTTC+AGG | - | chr7_4:51825326-51825345 | Msa1161650:intron | 50.0% |
| !! | TGTTATGGTGTCGCGAGCAA+GGG | - | chr7_4:51825467-51825486 | Msa1161650:intron | 50.0% |
| !! | CTCCTGGTCTTATTGAAGGG+GGG | - | chr7_4:51825517-51825536 | Msa1161650:intron | 50.0% |
| TACCCCCCTTCAATAAGACC+AGG | + | chr7_4:51825522-51825541 | None:intergenic | 50.0% | |
| TGCATCTGGTGGAGAGAACT+GGG | + | chr7_4:51825824-51825843 | None:intergenic | 50.0% | |
| ATGCATCTGGTGGAGAGAAC+TGG | + | chr7_4:51825825-51825844 | None:intergenic | 50.0% | |
| GTTCTCTCCACCAGATGCAT+TGG | - | chr7_4:51825825-51825844 | Msa1161650:intron | 50.0% | |
| ! | GGCACCGGAATCGAAGTATT+TGG | - | chr7_4:51826004-51826023 | Msa1161650:intron | 50.0% |
| ! | GAATACATTGGTTGGCCACC+TGG | - | chr7_4:51826062-51826081 | Msa1161650:intron | 50.0% |
| ACAGGAATGGCAGAAGCCTA+GGG | + | chr7_4:51827157-51827176 | None:intergenic | 50.0% | |
| AACAGGAATGGCAGAAGCCT+AGG | + | chr7_4:51827158-51827177 | None:intergenic | 50.0% | |
| TCTTGATCGAGAACAGTGGG+AGG | - | chr7_4:51827179-51827198 | Msa1161650:intron | 50.0% | |
| GGACCGAATCCAAATCAGAG+AGG | - | chr7_4:51827435-51827454 | Msa1161650:intron | 50.0% | |
| ACATCACGTGTCTCCCAAGA+GGG | + | chr7_4:51827650-51827669 | None:intergenic | 50.0% | |
| TCTTGGGAGACACGTGATGT+CGG | - | chr7_4:51827650-51827669 | Msa1161650:CDS | 50.0% | |
| GTTCAGAAAGAGACGCGTGA+AGG | - | chr7_4:51827674-51827693 | Msa1161650:CDS | 50.0% | |
| GATACGCGTAAAGAGAAGCG+TGG | - | chr7_4:51827707-51827726 | Msa1161650:CDS | 50.0% | |
| !! | AGAAGCGTGGTGCAGGTTTT+CGG | - | chr7_4:51827720-51827739 | Msa1161650:exon | 50.0% |
| CTGCAATCCCTATTAGCGTG+CGG | - | chr7_4:51827869-51827888 | Msa1161650:intron | 50.0% | |
| TCCTATGCCGCACGCTAATA+GGG | + | chr7_4:51827879-51827898 | None:intergenic | 50.0% | |
| TTCCTATGCCGCACGCTAAT+AGG | + | chr7_4:51827880-51827899 | None:intergenic | 50.0% | |
| TTTGGGTGGGGGGAGAAAGA+AGG | - | chr7_4:51824312-51824331 | Msa1161650:three_prime_UTR | 55.0% | |
| ! | TCCTGTGATGGTTTGCAGGG+TGG | - | chr7_4:51825369-51825388 | Msa1161650:intron | 55.0% |
| ACCACCCTGCAAACCATCAC+AGG | + | chr7_4:51825373-51825392 | None:intergenic | 55.0% | |
| ! | TGTGATGGTTTGCAGGGTGG+TGG | - | chr7_4:51825372-51825391 | Msa1161650:intron | 55.0% |
| GGAAGGGCCAAGACCTGTTA+TGG | - | chr7_4:51825452-51825471 | Msa1161650:intron | 55.0% | |
| CGCGACACCATAACAGGTCT+TGG | + | chr7_4:51825462-51825481 | None:intergenic | 55.0% | |
| CTTGCTCGCGACACCATAAC+AGG | + | chr7_4:51825468-51825487 | None:intergenic | 55.0% | |
| !! | CTGTTATGGTGTCGCGAGCA+AGG | - | chr7_4:51825466-51825485 | Msa1161650:intron | 55.0% |
| TCATGCCTTGGCTGCTGCAT+TGG | - | chr7_4:51826196-51826215 | Msa1161650:intron | 55.0% | |
| ! | CCTTGGCTGCTGCATTGGTA+GGG | - | chr7_4:51826201-51826220 | Msa1161650:intron | 55.0% |
| GACATCACGTGTCTCCCAAG+AGG | + | chr7_4:51827651-51827670 | None:intergenic | 55.0% | |
| CAGAAAGAGACGCGTGAAGG+TGG | - | chr7_4:51827677-51827696 | Msa1161650:CDS | 55.0% | |
| ! | CGTAAAGAGAAGCGTGGTGC+AGG | - | chr7_4:51827713-51827732 | Msa1161650:CDS | 55.0% |
| TCCCTATTAGCGTGCGGCAT+AGG | - | chr7_4:51827875-51827894 | Msa1161650:intron | 55.0% | |
| ! | GTGATGGGGAAAGGCGGTGT+TGG | - | chr7_4:51825264-51825283 | Msa1161650:intron | 60.0% |
| ! | GCCTTGGCTGCTGCATTGGT+AGG | - | chr7_4:51826200-51826219 | Msa1161650:intron | 60.0% |
| CCCTACCAATGCAGCAGCCA+AGG | + | chr7_4:51826204-51826223 | None:intergenic | 60.0% | |
| !! | ATGGTGTCGCGAGCAAGGGC+TGG | - | chr7_4:51825471-51825490 | Msa1161650:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 51824312 | 51828116 | 51824312 | ID=Msa1161650;Name=Msa1161650 |
| chr7_4 | mRNA | 51824312 | 51828116 | 51824312 | ID=Msa1161650-mRNA-1;Parent=Msa1161650;Name=Msa1161650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|0.85|0.75|8|368|330 |
| chr7_4 | exon | 51824312 | 51824844 | 51824312 | ID=Msa1161650-mRNA-1:exon:14788;Parent=Msa1161650-mRNA-1 |
| chr7_4 | exon | 51824937 | 51825098 | 51824937 | ID=Msa1161650-mRNA-1:exon:14787;Parent=Msa1161650-mRNA-1 |
| chr7_4 | exon | 51825200 | 51825268 | 51825200 | ID=Msa1161650-mRNA-1:exon:14786;Parent=Msa1161650-mRNA-1 |
| chr7_4 | exon | 51826495 | 51826759 | 51826495 | ID=Msa1161650-mRNA-1:exon:14785;Parent=Msa1161650-mRNA-1 |
| chr7_4 | exon | 51826854 | 51826978 | 51826854 | ID=Msa1161650-mRNA-1:exon:14784;Parent=Msa1161650-mRNA-1 |
| chr7_4 | exon | 51827081 | 51827188 | 51827081 | ID=Msa1161650-mRNA-1:exon:14783;Parent=Msa1161650-mRNA-1 |
| chr7_4 | exon | 51827640 | 51827747 | 51827640 | ID=Msa1161650-mRNA-1:exon:14782;Parent=Msa1161650-mRNA-1 |
| chr7_4 | exon | 51827987 | 51828116 | 51827987 | ID=Msa1161650-mRNA-1:exon:14781;Parent=Msa1161650-mRNA-1 |
| chr7_4 | five_prime_UTR | 51827987 | 51828116 | 51827987 | ID=Msa1161650-mRNA-1:five_prime_utr;Parent=Msa1161650-mRNA-1 |
| chr7_4 | five_prime_UTR | 51827739 | 51827747 | 51827739 | ID=Msa1161650-mRNA-1:five_prime_utr;Parent=Msa1161650-mRNA-1 |
| chr7_4 | CDS | 51827640 | 51827738 | 51827640 | ID=Msa1161650-mRNA-1:cds;Parent=Msa1161650-mRNA-1 |
| chr7_4 | CDS | 51827081 | 51827188 | 51827081 | ID=Msa1161650-mRNA-1:cds;Parent=Msa1161650-mRNA-1 |
| chr7_4 | CDS | 51826854 | 51826978 | 51826854 | ID=Msa1161650-mRNA-1:cds;Parent=Msa1161650-mRNA-1 |
| chr7_4 | CDS | 51826495 | 51826759 | 51826495 | ID=Msa1161650-mRNA-1:cds;Parent=Msa1161650-mRNA-1 |
| chr7_4 | CDS | 51825200 | 51825268 | 51825200 | ID=Msa1161650-mRNA-1:cds;Parent=Msa1161650-mRNA-1 |
| chr7_4 | CDS | 51824937 | 51825098 | 51824937 | ID=Msa1161650-mRNA-1:cds;Parent=Msa1161650-mRNA-1 |
| chr7_4 | CDS | 51824680 | 51824844 | 51824680 | ID=Msa1161650-mRNA-1:cds;Parent=Msa1161650-mRNA-1 |
| chr7_4 | three_prime_UTR | 51824312 | 51824679 | 51824312 | ID=Msa1161650-mRNA-1:three_prime_utr;Parent=Msa1161650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
