Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396000 | ACJ85286.1 | 93.675 | 332 | 19 | 1 | 1 | 330 | 1 | 332 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396000 | sp|Q41009|TOC34_PEA | 89.068 | 311 | 31 | 2 | 1 | 309 | 1 | 310 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396000 | B7FKK2 | 93.675 | 332 | 19 | 1 | 1 | 330 | 1 | 332 | 0.0 | 633 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027260 | Msa1396000 | 0.849208 | 3.748093e-60 | -8.615850e-47 |
| Msa1396000 | Msa1450280 | 0.804726 | 1.880845e-49 | -8.615850e-47 |
| Msa0621950 | Msa1396000 | 0.816678 | 4.884881e-52 | -8.615850e-47 |
| Msa0654540 | Msa1396000 | 0.853980 | 1.669114e-61 | -8.615850e-47 |
| Msa0661300 | Msa1396000 | 0.803914 | 2.777441e-49 | -8.615850e-47 |
| Msa0677290 | Msa1396000 | 0.831152 | 1.962519e-55 | -8.615850e-47 |
| Msa0696620 | Msa1396000 | 0.840150 | 1.034177e-57 | -8.615850e-47 |
| Msa0755340 | Msa1396000 | 0.812040 | 5.179136e-51 | -8.615850e-47 |
| Msa0127310 | Msa1396000 | 0.817181 | 3.766923e-52 | -8.615850e-47 |
| Msa0199880 | Msa1396000 | 0.803617 | 3.201125e-49 | -8.615850e-47 |
| Msa1257510 | Msa1396000 | 0.805448 | 1.328668e-49 | -8.615850e-47 |
| Msa0369450 | Msa1396000 | 0.812381 | 4.363644e-51 | -8.615850e-47 |
| Msa0425940 | Msa1396000 | 0.808540 | 2.945836e-50 | -8.615850e-47 |
| Msa0426160 | Msa1396000 | 0.807153 | 5.808229e-50 | -8.615850e-47 |
| Msa1019240 | Msa1396000 | 0.812748 | 3.627287e-51 | -8.615850e-47 |
| Msa1019260 | Msa1396000 | 0.832774 | 7.800731e-56 | -8.615850e-47 |
| Msa1093270 | Msa1396000 | 0.801938 | 7.109057e-49 | -8.615850e-47 |
| Msa1104210 | Msa1396000 | 0.821032 | 5.007617e-53 | -8.615850e-47 |
| Msa0264570 | Msa1396000 | 0.805866 | 1.085400e-49 | -8.615850e-47 |
| Msa0337650 | Msa1396000 | 0.810994 | 8.738692e-51 | -8.615850e-47 |
| Msa1126510 | Msa1396000 | 0.845953 | 2.943021e-59 | -8.615850e-47 |
| Msa1126770 | Msa1396000 | 0.809667 | 1.689813e-50 | -8.615850e-47 |
| Msa1134110 | Msa1396000 | 0.818467 | 1.930786e-52 | -8.615850e-47 |
| Msa1142970 | Msa1396000 | 0.813321 | 2.715621e-51 | -8.615850e-47 |
| Msa1161650 | Msa1396000 | 0.849287 | 3.562261e-60 | -8.615850e-47 |
| Msa1166860 | Msa1396000 | 0.849129 | 3.943113e-60 | -8.615850e-47 |
| Msa1193070 | Msa1396000 | 0.811371 | 7.239849e-51 | -8.615850e-47 |
| Msa1218140 | Msa1396000 | 0.817880 | 2.621283e-52 | -8.615850e-47 |
| Msa0576940 | Msa1396000 | 0.803076 | 4.141859e-49 | -8.615850e-47 |
| Msa0910390 | Msa1396000 | 0.808728 | 2.686106e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396000 | MtrunA17_Chr7g0254961 | 94.277 | 332 | 17 | 1 | 1 | 330 | 1 | 332 | 0.0 | 614 |
| Msa1396000 | MtrunA17_Chr3g0126061 | 92.966 | 327 | 22 | 1 | 4 | 330 | 7 | 332 | 0.0 | 595 |
| Msa1396000 | MtrunA17_Chr2g0292751 | 36.475 | 244 | 139 | 6 | 3 | 235 | 667 | 905 | 8.52e-34 | 132 |
| Msa1396000 | MtrunA17_Chr2g0292401 | 37.736 | 212 | 116 | 7 | 36 | 235 | 208 | 415 | 6.04e-33 | 129 |
| Msa1396000 | MtrunA17_Chr8g0380401 | 37.143 | 210 | 118 | 4 | 37 | 235 | 742 | 948 | 2.93e-31 | 124 |
| Msa1396000 | MtrunA17_Chr4g0067361 | 38.389 | 211 | 114 | 5 | 37 | 235 | 623 | 829 | 8.45e-31 | 122 |
| Msa1396000 | MtrunA17_Chr4g0064571 | 30.579 | 242 | 146 | 6 | 37 | 264 | 177 | 410 | 1.90e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396000 | AT5G05000.1 | 65.686 | 306 | 105 | 0 | 2 | 307 | 3 | 308 | 1.68e-154 | 436 |
| Msa1396000 | AT5G05000.2 | 65.686 | 306 | 105 | 0 | 2 | 307 | 3 | 308 | 1.68e-154 | 436 |
| Msa1396000 | AT5G05000.3 | 65.686 | 306 | 105 | 0 | 2 | 307 | 3 | 308 | 1.68e-154 | 436 |
| Msa1396000 | AT1G02280.1 | 60.068 | 293 | 116 | 1 | 6 | 298 | 5 | 296 | 9.00e-130 | 372 |
| Msa1396000 | AT1G02280.2 | 60.068 | 293 | 116 | 1 | 6 | 298 | 5 | 296 | 9.00e-130 | 372 |
| Msa1396000 | AT3G16620.1 | 36.134 | 238 | 138 | 5 | 7 | 235 | 425 | 657 | 1.22e-36 | 140 |
| Msa1396000 | AT2G16640.2 | 36.975 | 238 | 136 | 5 | 7 | 235 | 543 | 775 | 1.01e-35 | 137 |
| Msa1396000 | AT2G16640.1 | 36.975 | 238 | 136 | 5 | 7 | 235 | 543 | 775 | 1.01e-35 | 137 |
| Msa1396000 | AT2G16640.3 | 36.975 | 238 | 136 | 5 | 7 | 235 | 543 | 775 | 1.01e-35 | 137 |
| Msa1396000 | AT4G02510.1 | 36.283 | 226 | 136 | 2 | 18 | 235 | 836 | 1061 | 4.17e-30 | 121 |
| Msa1396000 | AT4G02510.4 | 36.283 | 226 | 136 | 2 | 18 | 235 | 836 | 1061 | 4.17e-30 | 121 |
| Msa1396000 | AT4G02510.3 | 36.283 | 226 | 136 | 2 | 18 | 235 | 836 | 1061 | 4.17e-30 | 121 |
| Msa1396000 | AT4G02510.2 | 36.283 | 226 | 136 | 2 | 18 | 235 | 836 | 1061 | 4.17e-30 | 121 |
| Msa1396000 | AT5G20300.3 | 33.816 | 207 | 124 | 3 | 37 | 235 | 38 | 239 | 5.60e-25 | 105 |
| Msa1396000 | AT5G20300.4 | 33.816 | 207 | 124 | 3 | 37 | 235 | 166 | 367 | 6.03e-25 | 106 |
| Msa1396000 | AT5G20300.1 | 33.816 | 207 | 124 | 3 | 37 | 235 | 166 | 367 | 6.03e-25 | 106 |
| Msa1396000 | AT5G20300.5 | 33.816 | 207 | 124 | 3 | 37 | 235 | 166 | 367 | 6.03e-25 | 106 |
| Msa1396000 | AT5G20300.2 | 33.816 | 207 | 124 | 3 | 37 | 235 | 166 | 367 | 6.03e-25 | 106 |
Find 110 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAACATCATCCTTCTTTA+AGG | 0.099227 | tig0021982:+31167 | None:intergenic |
| AACCAAATTGCTTGAACTTT+TGG | 0.170239 | tig0021982:-32325 | Msa1396000:CDS |
| TTTGATTCTTCAAGGATTTA+TGG | 0.185610 | tig0021982:-28848 | Msa1396000:three_prime_UTR |
| TTCCTATGCCGCACGCTAAT+AGG | 0.211707 | tig0021982:+29006 | None:intergenic |
| TCCCAAAAGTTCAAGCAATT+TGG | 0.280508 | tig0021982:+32323 | None:intergenic |
| ATCTATCGTCGCTTCCCTTC+CGG | 0.280823 | tig0021982:-32656 | Msa1396000:intron |
| GGTGACGATTAGTCCCTTTC+AGG | 0.306780 | tig0021982:-31752 | Msa1396000:intron |
| GTGGAATTAGTGGAACATTA+TGG | 0.310688 | tig0021982:-32403 | Msa1396000:intron |
| AGCAATTTGGTTTGTGTAGC+AGG | 0.313096 | tig0021982:+32336 | None:intergenic |
| TTGATTCTTCAAGGATTTAT+GGG | 0.315515 | tig0021982:-28847 | Msa1396000:three_prime_UTR |
| GGAATTTGTCTGTGATTTAG+AGG | 0.331508 | tig0021982:-28987 | Msa1396000:three_prime_UTR |
| ATGCAATTTCTGTGATTGTT+TGG | 0.334323 | tig0021982:+29515 | None:intergenic |
| TTATGTGAATTCAGTTTGAT+AGG | 0.342439 | tig0021982:-28954 | Msa1396000:three_prime_UTR |
| TAGGATAAGGTGGAGGGTTA+AGG | 0.344222 | tig0021982:-32709 | Msa1396000:five_prime_UTR |
| AAAGCTATTACCGACAGTTT+TGG | 0.350381 | tig0021982:-31321 | Msa1396000:CDS |
| ATGCATCTGGTGGAGAGAAC+TGG | 0.359249 | tig0021982:+31256 | None:intergenic |
| TCCTATGCCGCACGCTAATA+GGG | 0.363181 | tig0021982:+29007 | None:intergenic |
| AAGGATTTATGGGTCTTCAT+TGG | 0.364659 | tig0021982:-28837 | Msa1396000:three_prime_UTR |
| TCAACAAAACAGATACAAAA+AGG | 0.364771 | tig0021982:+29059 | None:intergenic |
| CTTAAAGAAGGATGATGTTC+AGG | 0.370155 | tig0021982:-31166 | Msa1396000:intron |
| TTCTTCCAAATGGGATTGCT+TGG | 0.375270 | tig0021982:-29552 | Msa1396000:CDS |
| GCCTTTCCCCATCACAAGTA+TGG | 0.380158 | tig0021982:+31822 | None:intergenic |
| TTTCCTCTCTGATTTGGATT+CGG | 0.383451 | tig0021982:+29445 | None:intergenic |
| TCCCCAAGTTTGATTCTTCA+AGG | 0.384383 | tig0021982:-28856 | Msa1396000:three_prime_UTR |
| TCCTGTCATATTTGCTCTAC+AGG | 0.390727 | tig0021982:-29413 | Msa1396000:intron |
| CTTGCTCGCGACACCATAAC+AGG | 0.401022 | tig0021982:+31613 | None:intergenic |
| GGAATCCAAGCAATCCCATT+TGG | 0.403774 | tig0021982:+29547 | None:intergenic |
| TGGTGACAGGTTCTTCCAAA+TGG | 0.415072 | tig0021982:-29562 | Msa1396000:intron |
| TCGAAACAGTATACTCTGAT+AGG | 0.420181 | tig0021982:-32728 | Msa1396000:five_prime_UTR |
| TCAACTGTGAACTCTATCAT+TGG | 0.422316 | tig0021982:-31784 | Msa1396000:CDS |
| CAACTGTGAACTCTATCATT+GGG | 0.422468 | tig0021982:-31783 | Msa1396000:CDS |
| CACGTAAAGCAGAACATCTA+TGG | 0.427275 | tig0021982:+31392 | None:intergenic |
| AGGATAAGGTGGAGGGTTAA+GGG | 0.432229 | tig0021982:-32708 | Msa1396000:five_prime_UTR |
| GGAAGGGCCAAGACCTGTTA+TGG | 0.439208 | tig0021982:-31626 | Msa1396000:CDS |
| GTTGACAAGAATTTGATTGA+AGG | 0.442484 | tig0021982:-29469 | Msa1396000:CDS |
| TACTTGTGATGGGGAAAGGC+GGG | 0.447242 | tig0021982:-31819 | Msa1396000:CDS |
| CTATTACAAATTATAAAATC+AGG | 0.450237 | tig0021982:-31195 | Msa1396000:CDS |
| CAACAAGTTCGTGATTGGTC+TGG | 0.451843 | tig0021982:-32375 | Msa1396000:CDS |
| ATAGATAGATAGAGAGAGAT+GGG | 0.453025 | tig0021982:+32677 | None:intergenic |
| TCATCATAAGCCAATGCATC+TGG | 0.455523 | tig0021982:+31243 | None:intergenic |
| CATCTCAACAAGTTCGTGAT+TGG | 0.458661 | tig0021982:-32380 | Msa1396000:CDS |
| GATACTCCTGGTCTTATTGA+AGG | 0.474002 | tig0021982:-31565 | Msa1396000:CDS |
| AATTCATGACATACCTGAAA+GGG | 0.474503 | tig0021982:+31739 | None:intergenic |
| GTTCTCTCCACCAGATGCAT+TGG | 0.475208 | tig0021982:-31253 | Msa1396000:CDS |
| TTCTTGATCAGTGCTTCTAT+AGG | 0.477157 | tig0021982:+29281 | None:intergenic |
| CGTAAAGAGAAGCGTGGTGC+AGG | 0.479139 | tig0021982:-29170 | Msa1396000:CDS |
| AGTAGACAACTTGGATAAGT+TGG | 0.484708 | tig0021982:-31349 | Msa1396000:CDS |
| ATGTTCTGCTTTACGTGGAC+CGG | 0.489258 | tig0021982:-31386 | Msa1396000:CDS |
| CGCGACACCATAACAGGTCT+TGG | 0.490128 | tig0021982:+31619 | None:intergenic |
| AATCCTTGAAGAATCAAACT+TGG | 0.494583 | tig0021982:+28853 | None:intergenic |
| CAGTATACTCTGATAGGATA+AGG | 0.495140 | tig0021982:-32722 | Msa1396000:five_prime_UTR |
| GTGATGGGGAAAGGCGGGGT+TGG | 0.496241 | tig0021982:-31814 | Msa1396000:CDS |
| ATCCTTGAAGAATCAAACTT+GGG | 0.496704 | tig0021982:+28854 | None:intergenic |
| GGTGACAGGTTCTTCCAAAT+GGG | 0.497063 | tig0021982:-29561 | Msa1396000:intron |
| CTGTTCTCGATCAAGACAAC+AGG | 0.497310 | tig0021982:+29711 | None:intergenic |
| ATGGTGTCGCGAGCAAGGGC+TGG | 0.505340 | tig0021982:-31607 | Msa1396000:CDS |
| GATAGATAGATAGAGAGAGA+TGG | 0.508920 | tig0021982:+32676 | None:intergenic |
| TGCATCTGGTGGAGAGAACT+GGG | 0.514376 | tig0021982:+31257 | None:intergenic |
| CTCTATCATTGGGGAAAGAG+TGG | 0.517485 | tig0021982:-31773 | Msa1396000:CDS |
| CTACTCGATATGCATCTAAC+CGG | 0.517570 | tig0021982:+31367 | None:intergenic |
| CTCCTTGACCATACTTGTGA+TGG | 0.518881 | tig0021982:-31830 | Msa1396000:CDS |
| ATCAGGTGCATCCTTAAAGA+AGG | 0.519105 | tig0021982:-31178 | Msa1396000:CDS |
| CTGTTATGGTGTCGCGAGCA+AGG | 0.521500 | tig0021982:-31612 | Msa1396000:CDS |
| ACCATACTTGTGATGGGGAA+AGG | 0.525719 | tig0021982:-31823 | Msa1396000:CDS |
| AAAGGATGTGTCAGCAGTGA+TGG | 0.526871 | tig0021982:+29077 | None:intergenic |
| ACCTGTAGAGCAAATATGAC+AGG | 0.529529 | tig0021982:+29412 | None:intergenic |
| ATACTCCTGGTCTTATTGAA+GGG | 0.535356 | tig0021982:-31564 | Msa1396000:CDS |
| CATCTATGGTCTTGTCCAGA+AGG | 0.535370 | tig0021982:+31406 | None:intergenic |
| TCCTTGACCATACTTGTGAT+GGG | 0.544068 | tig0021982:-31829 | Msa1396000:CDS |
| TGAAGAATCAAACTTGGGGA+TGG | 0.547200 | tig0021982:+28859 | None:intergenic |
| TCCCTATTAGCGTGCGGCAT+AGG | 0.550206 | tig0021982:-29008 | Msa1396000:three_prime_UTR |
| TACTCCTGGTCTTATTGAAG+GGG | 0.552263 | tig0021982:-31563 | Msa1396000:CDS |
| TGCATATCGAGTAGACAACT+TGG | 0.557200 | tig0021982:-31358 | Msa1396000:CDS |
| TTTATCTTGAATAGTCGGAA+GGG | 0.557686 | tig0021982:-31642 | Msa1396000:intron |
| TGTTATGGTGTCGCGAGCAA+GGG | 0.561068 | tig0021982:-31611 | Msa1396000:CDS |
| TTTCTGTGATTGTTTGGACT+AGG | 0.564078 | tig0021982:+29521 | None:intergenic |
| CCCCATCACAAGTATGGTCA+AGG | 0.568031 | tig0021982:+31828 | None:intergenic |
| TTGAACATTATCGATACTCC+TGG | 0.568301 | tig0021982:-31577 | Msa1396000:CDS |
| ACTCTGATAGGATAAGGTGG+AGG | 0.573574 | tig0021982:-32716 | Msa1396000:five_prime_UTR |
| TGGCACTTGATATCATAAAA+CGG | 0.573744 | tig0021982:-31525 | Msa1396000:intron |
| TATTCCTTTGCCAAAACTGT+CGG | 0.575835 | tig0021982:+31311 | None:intergenic |
| CTCTGATAGGATAAGGTGGA+GGG | 0.581109 | tig0021982:-32715 | Msa1396000:five_prime_UTR |
| TTTGGGAAAACTCAAACAAG+AGG | 0.582314 | tig0021982:-32307 | Msa1396000:intron |
| ACTTGTGATGGGGAAAGGCG+GGG | 0.584529 | tig0021982:-31818 | Msa1396000:CDS |
| CTCGATCAAGACAACAGGAA+TGG | 0.587478 | tig0021982:+29716 | None:intergenic |
| TTGTCTTGATCGAGAACAGT+GGG | 0.594394 | tig0021982:-29707 | Msa1396000:CDS |
| CATAGATGTTCTGCTTTACG+TGG | 0.595198 | tig0021982:-31391 | Msa1396000:CDS |
| CAATTCATGACATACCTGAA+AGG | 0.595623 | tig0021982:+31738 | None:intergenic |
| CAGAAAGAAACGCGTGAAGG+TGG | 0.600143 | tig0021982:-29206 | Msa1396000:CDS |
| ATACTTGTGATGGGGAAAGG+CGG | 0.602852 | tig0021982:-31820 | Msa1396000:CDS |
| TCATAAGCCAATGCATCTGG+TGG | 0.606653 | tig0021982:+31246 | None:intergenic |
| TCTTGGGAGACACGTGATGT+CGG | 0.608203 | tig0021982:-29233 | Msa1396000:CDS |
| GGAAGAAATGGTTACCGGAA+GGG | 0.613712 | tig0021982:+32642 | None:intergenic |
| ACATCACGTGTCTCCCAAGA+GGG | 0.623468 | tig0021982:+29236 | None:intergenic |
| TATACTCTGATAGGATAAGG+TGG | 0.626587 | tig0021982:-32719 | Msa1396000:five_prime_UTR |
| TGGCAAAGGAATATGGAACA+AGG | 0.632914 | tig0021982:-31301 | Msa1396000:CDS |
| TCCTTGAAGAATCAAACTTG+GGG | 0.635761 | tig0021982:+28855 | None:intergenic |
| AACTGTGAACTCTATCATTG+GGG | 0.637041 | tig0021982:-31782 | Msa1396000:CDS |
| GTGATTGTTTGGACTAGGTG+AGG | 0.644553 | tig0021982:+29526 | None:intergenic |
| CTCCTGGTCTTATTGAAGGG+GGG | 0.648814 | tig0021982:-31561 | Msa1396000:CDS |
| ACTCCTGGTCTTATTGAAGG+GGG | 0.649298 | tig0021982:-31562 | Msa1396000:CDS |
| CCTTGACCATACTTGTGATG+GGG | 0.651438 | tig0021982:-31828 | Msa1396000:CDS |
| GTTCAGAAAGAAACGCGTGA+AGG | 0.665379 | tig0021982:-29209 | Msa1396000:CDS |
| GTTGTCTTGATCGAGAACAG+TGG | 0.669136 | tig0021982:-29708 | Msa1396000:CDS |
| GACATCACGTGTCTCCCAAG+AGG | 0.672049 | tig0021982:+29235 | None:intergenic |
| CTGCAATCCCTATTAGCGTG+CGG | 0.688503 | tig0021982:-29014 | Msa1396000:three_prime_UTR |
| ATAAGGTGGAGGGTTAAGGG+CGG | 0.713125 | tig0021982:-32705 | Msa1396000:five_prime_UTR |
| TCTTGATCGAGAACAGTGGG+AGG | 0.718297 | tig0021982:-29704 | Msa1396000:CDS |
| GGACCGAATCCAAATCAGAG+AGG | 0.731341 | tig0021982:-29448 | Msa1396000:CDS |
| GATATGCGTAAAGAGAAGCG+TGG | 0.787629 | tig0021982:-29176 | Msa1396000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAATAAAATAAAATT+GGG | + | tig0021982:28989-29008 | None:intergenic | 0.0% |
| !! | TTATATAAATAAAATAAAAT+TGG | + | tig0021982:28990-29009 | None:intergenic | 0.0% |
| !! | TTCAGAATTTATTAAAAAAT+TGG | - | tig0021982:30917-30936 | Msa1396000:intron | 10.0% |
| !! | TGTTCATTATACTAATTATT+AGG | - | tig0021982:29085-29104 | Msa1396000:three_prime_UTR | 15.0% |
| !! | AAGAATTTGTATTTAAAAGA+TGG | - | tig0021982:29646-29665 | Msa1396000:intron | 15.0% |
| !! | AGAATTTGTATTTAAAAGAT+GGG | - | tig0021982:29647-29666 | Msa1396000:intron | 15.0% |
| !!! | GTGAATCTTTTATTTTTTTT+GGG | - | tig0021982:30087-30106 | Msa1396000:intron | 15.0% |
| !! | CTATTACAAATTATAAAATC+AGG | - | tig0021982:30363-30382 | Msa1396000:intron | 15.0% |
| !! | TAATAAATTCTGAATTTCAA+GGG | + | tig0021982:30911-30930 | None:intergenic | 15.0% |
| !! | TTAATAAATTCTGAATTTCA+AGG | + | tig0021982:30912-30931 | None:intergenic | 15.0% |
| !! | AATATATAAGTAAAACTAGA+AGG | + | tig0021982:31149-31168 | None:intergenic | 15.0% |
| !!! | AAAATTACTTTATTTGTGAA+TGG | - | tig0021982:31610-31629 | Msa1396000:CDS | 15.0% |
| !! | TTAAAAGTAAAACAAAACCA+AGG | + | tig0021982:29599-29618 | None:intergenic | 20.0% |
| !!! | CTATTTTTATCTTGAATAGT+CGG | - | tig0021982:29911-29930 | Msa1396000:intron | 20.0% |
| !!! | CGTGAATCTTTTATTTTTTT+TGG | - | tig0021982:30086-30105 | Msa1396000:intron | 20.0% |
| !! | TATATATATAATCAACCAAG+TGG | + | tig0021982:30560-30579 | None:intergenic | 20.0% |
| !! | AATAAATTCTGAATTTCAAG+GGG | + | tig0021982:30910-30929 | None:intergenic | 20.0% |
| !!! | TTGTTCAGTTTTAGAAAAAT+TGG | - | tig0021982:31307-31326 | Msa1396000:CDS | 20.0% |
| !!! | ATTTTTCTCATTGAATATCT+AGG | + | tig0021982:31341-31360 | None:intergenic | 20.0% |
| !!! | TTATTACTTGCTTTAAAAGT+AGG | - | tig0021982:31649-31668 | Msa1396000:intron | 20.0% |
| !!! | TATTACTTGCTTTAAAAGTA+GGG | - | tig0021982:31650-31669 | Msa1396000:intron | 20.0% |
| !! | GGAAGAATAAAATAAACAAA+AGG | + | tig0021982:32230-32249 | None:intergenic | 20.0% |
| ! | GAAACAATTACTAACAATAG+TGG | + | tig0021982:29055-29074 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGTTCTGTTTG+TGG | - | tig0021982:29136-29155 | Msa1396000:three_prime_UTR | 25.0% |
| !!! | TCATGTTTCTAGTTTTGTTA+AGG | - | tig0021982:29301-29320 | Msa1396000:CDS | 25.0% |
| !!! | CATGTTTCTAGTTTTGTTAA+GGG | - | tig0021982:29302-29321 | Msa1396000:CDS | 25.0% |
| !! | ATTTTTCGTAATACCAACTA+TGG | - | tig0021982:29432-29451 | Msa1396000:CDS | 25.0% |
| !!! | TACCAACTATGGTTTTAAAT+TGG | - | tig0021982:29443-29462 | Msa1396000:CDS | 25.0% |
| !!! | ACCAACTATGGTTTTAAATT+GGG | - | tig0021982:29444-29463 | Msa1396000:CDS | 25.0% |
| !! | AAACTGAGATGTATTTTTCA+AGG | + | tig0021982:30445-30464 | None:intergenic | 25.0% |
| ! | TTTGAAAGTTAAAACTGTCA+AGG | - | tig0021982:30463-30482 | Msa1396000:intron | 25.0% |
| ! | CAATTATAAGAATTGAACCA+GGG | - | tig0021982:30940-30959 | Msa1396000:intron | 25.0% |
| ! | ATAAGTAAAACTAGAAGGAA+AGG | + | tig0021982:31144-31163 | None:intergenic | 25.0% |
| ! | CAATAAATGATGCAATGTAT+GGG | + | tig0021982:31188-31207 | None:intergenic | 25.0% |
| ! | TCAATAAATGATGCAATGTA+TGG | + | tig0021982:31189-31208 | None:intergenic | 25.0% |
| !!! | CATTTAGGGTATTTGTTTTA+TGG | - | tig0021982:31551-31570 | Msa1396000:CDS | 25.0% |
| ! | CAAAAATGAAACTGATGAAA+AGG | - | tig0021982:31882-31901 | Msa1396000:intron | 25.0% |
| ! | TCAGATTAAGCAAGATAAAT+GGG | + | tig0021982:31959-31978 | None:intergenic | 25.0% |
| ! | ATCAGATTAAGCAAGATAAA+TGG | + | tig0021982:31960-31979 | None:intergenic | 25.0% |
| ! | TCAACAAAACAGATACAAAA+AGG | + | tig0021982:32502-32521 | None:intergenic | 25.0% |
| !!! | TCTGTTTTGTTGAATTTAGT+TGG | - | tig0021982:32509-32528 | Msa1396000:intron | 25.0% |
| ! | TTATGTGAATTCAGTTTGAT+AGG | - | tig0021982:32604-32623 | Msa1396000:intron | 25.0% |
| ! | TTTGATTCTTCAAGGATTTA+TGG | - | tig0021982:32710-32729 | Msa1396000:five_prime_UTR | 25.0% |
| ! | TTGATTCTTCAAGGATTTAT+GGG | - | tig0021982:32711-32730 | Msa1396000:five_prime_UTR | 25.0% |
| !!! | CAGTTGCTTTATATTTTGAA+TGG | - | tig0021982:32767-32786 | Msa1396000:five_prime_UTR | 25.0% |
| ATAGATAGATAGAGAGAGAT+GGG | + | tig0021982:28884-28903 | None:intergenic | 30.0% | |
| ! | AACCAAATTGCTTGAACTTT+TGG | - | tig0021982:29233-29252 | Msa1396000:CDS | 30.0% |
| ! | ACCAAATTGCTTGAACTTTT+GGG | - | tig0021982:29234-29253 | Msa1396000:CDS | 30.0% |
| !!! | CCAACTATGGTTTTAAATTG+GGG | - | tig0021982:29445-29464 | Msa1396000:CDS | 30.0% |
| !!! | CAACTATGGTTTTAAATTGG+GGG | - | tig0021982:29446-29465 | Msa1396000:CDS | 30.0% |
| !!! | GTTTTTTTTGTTTCCGCTTT+GGG | - | tig0021982:29669-29688 | Msa1396000:intron | 30.0% |
| !!! | TTTTTTTTGTTTCCGCTTTG+GGG | - | tig0021982:29670-29689 | Msa1396000:intron | 30.0% |
| AATTCATGACATACCTGAAA+GGG | + | tig0021982:29822-29841 | None:intergenic | 30.0% | |
| ! | TTTTATCTTGAATAGTCGGA+AGG | - | tig0021982:29915-29934 | Msa1396000:intron | 30.0% |
| TTTATCTTGAATAGTCGGAA+GGG | - | tig0021982:29916-29935 | Msa1396000:intron | 30.0% | |
| TGGCACTTGATATCATAAAA+CGG | - | tig0021982:30033-30052 | Msa1396000:intron | 30.0% | |
| !!! | GAGATGTATTTTTCAAGGAT+AGG | + | tig0021982:30440-30459 | None:intergenic | 30.0% |
| AAATCCAAATACTTCGATTC+CGG | + | tig0021982:30491-30510 | None:intergenic | 30.0% | |
| !!! | GTATTTGGATTTTAAGTTCC+TGG | - | tig0021982:30499-30518 | Msa1396000:intron | 30.0% |
| ! | TGGATTTTATGATCCATGAA+CGG | - | tig0021982:30519-30538 | Msa1396000:intron | 30.0% |
| TAGGAAAACATATCCCTATA+AGG | + | tig0021982:30655-30674 | None:intergenic | 30.0% | |
| ! | TTATAGGGATATGTTTTCCT+AGG | - | tig0021982:30654-30673 | Msa1396000:intron | 30.0% |
| ! | CAGGGGTGTATTATATAAAT+TGG | + | tig0021982:30688-30707 | None:intergenic | 30.0% |
| GTAAATAAAGATTCATGCCT+TGG | - | tig0021982:30858-30877 | Msa1396000:intron | 30.0% | |
| GCAATTATAAGAATTGAACC+AGG | - | tig0021982:30939-30958 | Msa1396000:intron | 30.0% | |
| TAGTTAGTAACTAGATGCTA+TGG | + | tig0021982:31053-31072 | None:intergenic | 30.0% | |
| CATTGCATCATTTATTGATC+TGG | - | tig0021982:31191-31210 | Msa1396000:CDS | 30.0% | |
| ! | CTCATTGAATATCTAGGTTT+TGG | + | tig0021982:31335-31354 | None:intergenic | 30.0% |
| AACGAGTAGAGTAATAAAGA+AGG | + | tig0021982:31407-31426 | None:intergenic | 30.0% | |
| CTAAACTAAGTTATGACACA+CGG | - | tig0021982:31525-31544 | Msa1396000:intron | 30.0% | |
| !!! | TTTGTTTTATGGATGTTCTG+TGG | - | tig0021982:31562-31581 | Msa1396000:CDS | 30.0% |
| !! | TTGTTTTATGGATGTTCTGT+GGG | - | tig0021982:31563-31582 | Msa1396000:CDS | 30.0% |
| TCAAAAAAAAAGAGAGAACC+TGG | + | tig0021982:31682-31701 | None:intergenic | 30.0% | |
| !!! | GTTCTCTCTTTTTTTTTGAG+AGG | - | tig0021982:31683-31702 | Msa1396000:intron | 30.0% |
| AATGAAACTGATGAAAAGGT+TGG | - | tig0021982:31886-31905 | Msa1396000:intron | 30.0% | |
| ATGCAATTTCTGTGATTGTT+TGG | + | tig0021982:32046-32065 | None:intergenic | 30.0% | |
| GTTGACAAGAATTTGATTGA+AGG | - | tig0021982:32089-32108 | Msa1396000:intron | 30.0% | |
| ! | CATATTTTTCCTCTCTGATT+TGG | + | tig0021982:32122-32141 | None:intergenic | 30.0% |
| CAAATCAGAGAGGAAAAATA+TGG | - | tig0021982:32120-32139 | Msa1396000:intron | 30.0% | |
| AATCTCCTGACGTTTATAAA+GGG | + | tig0021982:32204-32223 | None:intergenic | 30.0% | |
| !!! | GGGATGGTTTTAATAGTTAA+AGG | + | tig0021982:32686-32705 | None:intergenic | 30.0% |
| ATCCTTGAAGAATCAAACTT+GGG | + | tig0021982:32707-32726 | None:intergenic | 30.0% | |
| AATCCTTGAAGAATCAAACT+TGG | + | tig0021982:32708-32727 | None:intergenic | 30.0% | |
| TCGAAACAGTATACTCTGAT+AGG | - | tig0021982:28830-28849 | Msa1396000:three_prime_UTR | 35.0% | |
| CAGTATACTCTGATAGGATA+AGG | - | tig0021982:28836-28855 | Msa1396000:three_prime_UTR | 35.0% | |
| TATACTCTGATAGGATAAGG+TGG | - | tig0021982:28839-28858 | Msa1396000:three_prime_UTR | 35.0% | |
| GATAGATAGATAGAGAGAGA+TGG | + | tig0021982:28885-28904 | None:intergenic | 35.0% | |
| AATTGGGAAGAAATGGTTAC+CGG | + | tig0021982:28924-28943 | None:intergenic | 35.0% | |
| ! | GTTGATGAATTGGGAAGAAA+TGG | + | tig0021982:28931-28950 | None:intergenic | 35.0% |
| !! | AAGACAACGGTTGATGAATT+GGG | + | tig0021982:28940-28959 | None:intergenic | 35.0% |
| !! | AAAGACAACGGTTGATGAAT+TGG | + | tig0021982:28941-28960 | None:intergenic | 35.0% |
| GTGAAAGTGAAGAAAGACAA+CGG | + | tig0021982:28953-28972 | None:intergenic | 35.0% | |
| AGTGGTTGAGAGAAGTAAAA+TGG | + | tig0021982:29037-29056 | None:intergenic | 35.0% | |
| TGTTCTGTTTGTGGAATTAG+TGG | - | tig0021982:29145-29164 | Msa1396000:exon | 35.0% | |
| GTGGAATTAGTGGAACATTA+TGG | - | tig0021982:29155-29174 | Msa1396000:exon | 35.0% | |
| TCCCAAAAGTTCAAGCAATT+TGG | + | tig0021982:29238-29257 | None:intergenic | 35.0% | |
| TTTGGGAAAACTCAAACAAG+AGG | - | tig0021982:29251-29270 | Msa1396000:CDS | 35.0% | |
| ACTGTCTGCAATTGTGATTA+TGG | - | tig0021982:29333-29352 | Msa1396000:intron | 35.0% | |
| CAGACCACAACTTCAATTAT+AGG | - | tig0021982:29385-29404 | Msa1396000:intron | 35.0% | |
| TTCGCCTATAATTGAAGTTG+TGG | + | tig0021982:29392-29411 | None:intergenic | 35.0% | |
| ! | CCCCAATTTAAAACCATAGT+TGG | + | tig0021982:29448-29467 | None:intergenic | 35.0% |
| AGACCTAAAATCCTGTATGT+TGG | - | tig0021982:29492-29511 | Msa1396000:CDS | 35.0% | |
| ! | CAACCAACATACAGGATTTT+AGG | + | tig0021982:29498-29517 | None:intergenic | 35.0% |
| ! | ATGTTGGTTGTTGTTGCAAT+TGG | - | tig0021982:29508-29527 | Msa1396000:CDS | 35.0% |
| ! | CCAAGGTTTTTAATCGTGAT+TGG | + | tig0021982:29582-29601 | None:intergenic | 35.0% |
| CCAATCACGATTAAAAACCT+TGG | - | tig0021982:29579-29598 | Msa1396000:intron | 35.0% | |
| !!! | GGTTTTTTTTGTTTCCGCTT+TGG | - | tig0021982:29668-29687 | Msa1396000:intron | 35.0% |
| TCAACTGTGAACTCTATCAT+TGG | - | tig0021982:29774-29793 | Msa1396000:intron | 35.0% | |
| CAACTGTGAACTCTATCATT+GGG | - | tig0021982:29775-29794 | Msa1396000:intron | 35.0% | |
| AACTGTGAACTCTATCATTG+GGG | - | tig0021982:29776-29795 | Msa1396000:intron | 35.0% | |
| CAATTCATGACATACCTGAA+AGG | + | tig0021982:29823-29842 | None:intergenic | 35.0% | |
| ! | CTTTCAGGTATGTCATGAAT+TGG | - | tig0021982:29821-29840 | Msa1396000:intron | 35.0% |
| TTGAACATTATCGATACTCC+TGG | - | tig0021982:29981-30000 | Msa1396000:intron | 35.0% | |
| !! | ATACTCCTGGTCTTATTGAA+GGG | - | tig0021982:29994-30013 | Msa1396000:intron | 35.0% |
| ! | AAACGGTATGCTTTTATGTC+TGG | - | tig0021982:30050-30069 | Msa1396000:intron | 35.0% |
| GAAGGAAGCTACAAGAAAAA+GGG | + | tig0021982:30137-30156 | None:intergenic | 35.0% | |
| AGAAGGAAGCTACAAGAAAA+AGG | + | tig0021982:30138-30157 | None:intergenic | 35.0% | |
| ! | TTTTTCTTGTAGCTTCCTTC+TGG | - | tig0021982:30137-30156 | Msa1396000:intron | 35.0% |
| AGTAGACAACTTGGATAAGT+TGG | - | tig0021982:30209-30228 | Msa1396000:intron | 35.0% | |
| ! | AAAGCTATTACCGACAGTTT+TGG | - | tig0021982:30237-30256 | Msa1396000:intron | 35.0% |
| TATTCCTTTGCCAAAACTGT+CGG | + | tig0021982:30250-30269 | None:intergenic | 35.0% | |
| !! | ACAGTTTTGGCAAAGGAATA+TGG | - | tig0021982:30250-30269 | Msa1396000:intron | 35.0% |
| CTGAACATCATCCTTCTTTA+AGG | + | tig0021982:30394-30413 | None:intergenic | 35.0% | |
| CTTAAAGAAGGATGATGTTC+AGG | - | tig0021982:30392-30411 | Msa1396000:intron | 35.0% | |
| GTTCATGGATCATAAAATCC+AGG | + | tig0021982:30520-30539 | None:intergenic | 35.0% | |
| ! | GGATTTTATGATCCATGAAC+GGG | - | tig0021982:30520-30539 | Msa1396000:intron | 35.0% |
| CTATAAGGTTGAGTGCATTT+GGG | + | tig0021982:30640-30659 | None:intergenic | 35.0% | |
| CAAATGCACTCAACCTTATA+GGG | - | tig0021982:30639-30658 | Msa1396000:intron | 35.0% | |
| ! | ATATGTTTTCCTAGGACACT+TGG | - | tig0021982:30662-30681 | Msa1396000:intron | 35.0% |
| ATAATACACCCCTGATGAAA+TGG | - | tig0021982:30694-30713 | Msa1396000:intron | 35.0% | |
| TAATACACCCCTGATGAAAT+GGG | - | tig0021982:30695-30714 | Msa1396000:intron | 35.0% | |
| !! | CACTTTTTACAAAAGCAGAC+TGG | + | tig0021982:30786-30805 | None:intergenic | 35.0% |
| !! | CAGTCTGCTTTTGTAAAAAG+TGG | - | tig0021982:30784-30803 | Msa1396000:intron | 35.0% |
| ! | TGGATTTGAAACTGTTGAAC+TGG | - | tig0021982:30804-30823 | Msa1396000:intron | 35.0% |
| !! | TCCATAAATGACTTGGTGAT+GGG | + | tig0021982:30988-31007 | None:intergenic | 35.0% |
| !! | ATCCATAAATGACTTGGTGA+TGG | + | tig0021982:30989-31008 | None:intergenic | 35.0% |
| ACAGAGATCCATAAATGACT+TGG | + | tig0021982:30995-31014 | None:intergenic | 35.0% | |
| ! | TGGATCTCTGTTTCTTAGTA+TGG | - | tig0021982:31004-31023 | Msa1396000:intron | 35.0% |
| CAAAGATTGAGGATGAAATG+TGG | + | tig0021982:31262-31281 | None:intergenic | 35.0% | |
| CAGTTATGAACTAGCACAAT+GGG | + | tig0021982:31365-31384 | None:intergenic | 35.0% | |
| ACAGTTATGAACTAGCACAA+TGG | + | tig0021982:31366-31385 | None:intergenic | 35.0% | |
| TAATAAAGAAGGCTAGTAGC+AGG | + | tig0021982:31396-31415 | None:intergenic | 35.0% | |
| ACATTCAACAGAGAACCAAA+AGG | + | tig0021982:31453-31472 | None:intergenic | 35.0% | |
| !! | TTTGGTTCTCTGTTGAATGT+TGG | - | tig0021982:31453-31472 | Msa1396000:intron | 35.0% |
| ! | TTGGTTCTCTGTTGAATGTT+GGG | - | tig0021982:31454-31473 | Msa1396000:intron | 35.0% |
| TATGACACACGGTTTCATTT+AGG | - | tig0021982:31536-31555 | Msa1396000:CDS | 35.0% | |
| ATGACACACGGTTTCATTTA+GGG | - | tig0021982:31537-31556 | Msa1396000:CDS | 35.0% | |
| ! | GTGACTCATAATTTTCATGC+TGG | - | tig0021982:31787-31806 | Msa1396000:CDS | 35.0% |
| ! | TTTGCCTTTTTCTTAACCCT+AGG | - | tig0021982:31813-31832 | Msa1396000:CDS | 35.0% |
| !! | GGTTGATAGAAGAGGATATA+AGG | + | tig0021982:31938-31957 | None:intergenic | 35.0% |
| !! | GATAAATGGGTTGATAGAAG+AGG | + | tig0021982:31946-31965 | None:intergenic | 35.0% |
| TGATTGAGAAAATGTGTGCA+TGG | - | tig0021982:31976-31995 | Msa1396000:intron | 35.0% | |
| TTTCTGTGATTGTTTGGACT+AGG | + | tig0021982:32040-32059 | None:intergenic | 35.0% | |
| !! | TTTCCTCTCTGATTTGGATT+CGG | + | tig0021982:32116-32135 | None:intergenic | 35.0% |
| ! | AGGTAAGCTTTTGAACTTTG+AGG | - | tig0021982:32165-32184 | Msa1396000:intron | 35.0% |
| ! | GTTTTCCCTTTATAAACGTC+AGG | - | tig0021982:32196-32215 | Msa1396000:intron | 35.0% |
| GAATCTCCTGACGTTTATAA+AGG | + | tig0021982:32205-32224 | None:intergenic | 35.0% | |
| TTCTTGATCAGTGCTTCTAT+AGG | + | tig0021982:32280-32299 | None:intergenic | 35.0% | |
| TAATGAGAAAAAGCCCTCTT+GGG | - | tig0021982:32309-32328 | Msa1396000:CDS | 35.0% | |
| GGAATTTGTCTGTGATTTAG+AGG | - | tig0021982:32571-32590 | Msa1396000:intron | 35.0% | |
| TCCTTGAAGAATCAAACTTG+GGG | + | tig0021982:32706-32725 | None:intergenic | 35.0% | |
| AAGGATTTATGGGTCTTCAT+TGG | - | tig0021982:32721-32740 | Msa1396000:five_prime_UTR | 35.0% | |
| GGTTGAGAGAAGTAAAATGG+TGG | + | tig0021982:29034-29053 | None:intergenic | 40.0% | |
| CATCTCAACAAGTTCGTGAT+TGG | - | tig0021982:29178-29197 | Msa1396000:CDS | 40.0% | |
| !! | AGCAATTTGGTTTGTGTAGC+AGG | + | tig0021982:29225-29244 | None:intergenic | 40.0% |
| AAATTGGGGGTGATGTATTG+TGG | - | tig0021982:29459-29478 | Msa1396000:CDS | 40.0% | |
| TGCAACAACAACCAACATAC+AGG | + | tig0021982:29506-29525 | None:intergenic | 40.0% | |
| TGTTGTTGCAATTGGAGTTG+CGG | - | tig0021982:29516-29535 | Msa1396000:CDS | 40.0% | |
| ATTGGTTGCATTGCGAAAGT+TGG | + | tig0021982:29564-29583 | None:intergenic | 40.0% | |
| TCCTTGACCATACTTGTGAT+GGG | - | tig0021982:29729-29748 | Msa1396000:intron | 40.0% | |
| GAATTGGTACTTTCCTGTGA+TGG | - | tig0021982:29837-29856 | Msa1396000:intron | 40.0% | |
| !! | GATACTCCTGGTCTTATTGA+AGG | - | tig0021982:29993-30012 | Msa1396000:intron | 40.0% |
| !! | TACTCCTGGTCTTATTGAAG+GGG | - | tig0021982:29995-30014 | Msa1396000:intron | 40.0% |
| CACGTAAAGCAGAACATCTA+TGG | + | tig0021982:30169-30188 | None:intergenic | 40.0% | |
| CATAGATGTTCTGCTTTACG+TGG | - | tig0021982:30167-30186 | Msa1396000:intron | 40.0% | |
| CTACTCGATATGCATCTAAC+CGG | + | tig0021982:30194-30213 | None:intergenic | 40.0% | |
| TGCATATCGAGTAGACAACT+TGG | - | tig0021982:30200-30219 | Msa1396000:intron | 40.0% | |
| !! | ATTACCGACAGTTTTGGCAA+AGG | - | tig0021982:30243-30262 | Msa1396000:intron | 40.0% |
| TGGCAAAGGAATATGGAACA+AGG | - | tig0021982:30257-30276 | Msa1396000:intron | 40.0% | |
| TCATCATAAGCCAATGCATC+TGG | + | tig0021982:30318-30337 | None:intergenic | 40.0% | |
| ATCAGGTGCATCCTTAAAGA+AGG | - | tig0021982:30380-30399 | Msa1396000:intron | 40.0% | |
| AGTTAAAACTGTCAAGGCAC+CGG | - | tig0021982:30469-30488 | Msa1396000:intron | 40.0% | |
| ATCCATGAACGGGAATACAT+TGG | - | tig0021982:30530-30549 | Msa1396000:intron | 40.0% | |
| AACCAATGTATTCCCGTTCA+TGG | + | tig0021982:30535-30554 | None:intergenic | 40.0% | |
| ATGAACGGGAATACATTGGT+TGG | - | tig0021982:30534-30553 | Msa1396000:intron | 40.0% | |
| CCTATAAGGTTGAGTGCATT+TGG | + | tig0021982:30641-30660 | None:intergenic | 40.0% | |
| CCAAATGCACTCAACCTTAT+AGG | - | tig0021982:30638-30657 | Msa1396000:intron | 40.0% | |
| ATAAATTGGCCAAGTGTCCT+AGG | + | tig0021982:30674-30693 | None:intergenic | 40.0% | |
| AATACACCCCTGATGAAATG+GGG | - | tig0021982:30696-30715 | Msa1396000:intron | 40.0% | |
| AAAACTGCCCCATTTCATCA+GGG | + | tig0021982:30706-30725 | None:intergenic | 40.0% | |
| AAAAACTGCCCCATTTCATC+AGG | + | tig0021982:30707-30726 | None:intergenic | 40.0% | |
| ! | ATTCATTGGTTAACCAGGTC+CGG | + | tig0021982:30752-30771 | None:intergenic | 40.0% |
| GACCTGGTTAACCAATGAAT+TGG | - | tig0021982:30752-30771 | Msa1396000:intron | 40.0% | |
| ! | GACCAATTCATTGGTTAACC+AGG | + | tig0021982:30757-30776 | None:intergenic | 40.0% |
| TAACCAATGAATTGGTCCAG+TGG | - | tig0021982:30760-30779 | Msa1396000:intron | 40.0% | |
| ! | ATCACATTTTATGATCGCCC+TGG | + | tig0021982:30960-30979 | None:intergenic | 40.0% |
| AGGGCGATCATAAAATGTGA+TGG | - | tig0021982:30959-30978 | Msa1396000:intron | 40.0% | |
| TCCCATCACCAAGTCATTTA+TGG | - | tig0021982:30984-31003 | Msa1396000:intron | 40.0% | |
| ACAACATCCGCATAAGTAGA+GGG | + | tig0021982:31291-31310 | None:intergenic | 40.0% | |
| AACAACATCCGCATAAGTAG+AGG | + | tig0021982:31292-31311 | None:intergenic | 40.0% | |
| CAAAAGGCTGCTACTCTTTA+CGG | + | tig0021982:31437-31456 | None:intergenic | 40.0% | |
| ACAGCATTCTTGCATTCTCA+TGG | - | tig0021982:31488-31507 | Msa1396000:intron | 40.0% | |
| CAGCATTCTTGCATTCTCAT+GGG | - | tig0021982:31489-31508 | Msa1396000:intron | 40.0% | |
| TTAAAAGTAGGGTTCTGTCC+AGG | - | tig0021982:31661-31680 | Msa1396000:intron | 40.0% | |
| GAAGCCTAGGGTTAAGAAAA+AGG | + | tig0021982:31820-31839 | None:intergenic | 40.0% | |
| TTGTCTTGATCGAGAACAGT+GGG | - | tig0021982:31851-31870 | Msa1396000:intron | 40.0% | |
| ! | AAGGTTGGAGATTTGCTTCA+TGG | - | tig0021982:31901-31920 | Msa1396000:intron | 40.0% |
| TTCTTCCAAATGGGATTGCT+TGG | - | tig0021982:32006-32025 | Msa1396000:intron | 40.0% | |
| TCCTGTCATATTTGCTCTAC+AGG | - | tig0021982:32145-32164 | Msa1396000:intron | 40.0% | |
| ACCTGTAGAGCAAATATGAC+AGG | + | tig0021982:32149-32168 | None:intergenic | 40.0% | |
| CTAATGAGAAAAAGCCCTCT+TGG | - | tig0021982:32308-32327 | Msa1396000:CDS | 40.0% | |
| ! | CTTCACAGATTTTCACGAGA+AGG | + | tig0021982:32455-32474 | None:intergenic | 40.0% |
| TGAAGAATCAAACTTGGGGA+TGG | + | tig0021982:32702-32721 | None:intergenic | 40.0% | |
| TCCCCAAGTTTGATTCTTCA+AGG | - | tig0021982:32702-32721 | Msa1396000:five_prime_UTR | 40.0% | |
| ACTCTGATAGGATAAGGTGG+AGG | - | tig0021982:28842-28861 | Msa1396000:three_prime_UTR | 45.0% | |
| CTCTGATAGGATAAGGTGGA+GGG | - | tig0021982:28843-28862 | Msa1396000:three_prime_UTR | 45.0% | |
| TAGGATAAGGTGGAGGGTTA+AGG | - | tig0021982:28849-28868 | Msa1396000:three_prime_UTR | 45.0% | |
| AGGATAAGGTGGAGGGTTAA+GGG | - | tig0021982:28850-28869 | Msa1396000:three_prime_UTR | 45.0% | |
| GGAAGAAATGGTTACCGGAA+GGG | + | tig0021982:28919-28938 | None:intergenic | 45.0% | |
| ! | CAACAAGTTCGTGATTGGTC+TGG | - | tig0021982:29183-29202 | Msa1396000:CDS | 45.0% |
| CTCCTTGACCATACTTGTGA+TGG | - | tig0021982:29728-29747 | Msa1396000:intron | 45.0% | |
| CCTTGACCATACTTGTGATG+GGG | - | tig0021982:29730-29749 | Msa1396000:intron | 45.0% | |
| ! | ACCATACTTGTGATGGGGAA+AGG | - | tig0021982:29735-29754 | Msa1396000:intron | 45.0% |
| ! | ATACTTGTGATGGGGAAAGG+CGG | - | tig0021982:29738-29757 | Msa1396000:intron | 45.0% |
| CTCTATCATTGGGGAAAGAG+TGG | - | tig0021982:29785-29804 | Msa1396000:intron | 45.0% | |
| ! | ACTTTCCTGTGATGGTTTGC+AGG | - | tig0021982:29845-29864 | Msa1396000:intron | 45.0% |
| ! | CTTTCCTGTGATGGTTTGCA+GGG | - | tig0021982:29846-29865 | Msa1396000:intron | 45.0% |
| !! | ACTCCTGGTCTTATTGAAGG+GGG | - | tig0021982:29996-30015 | Msa1396000:intron | 45.0% |
| ! | AGGGGGGTACATCAATGATA+TGG | - | tig0021982:30013-30032 | Msa1396000:intron | 45.0% |
| !! | CATCTATGGTCTTGTCCAGA+AGG | + | tig0021982:30155-30174 | None:intergenic | 45.0% |
| ATGTTCTGCTTTACGTGGAC+CGG | - | tig0021982:30172-30191 | Msa1396000:intron | 45.0% | |
| TCATAAGCCAATGCATCTGG+TGG | + | tig0021982:30315-30334 | None:intergenic | 45.0% | |
| ! | GAATACATTGGTTGGCCACT+TGG | - | tig0021982:30542-30561 | Msa1396000:intron | 45.0% |
| AAACTGCCCCATTTCATCAG+GGG | + | tig0021982:30705-30724 | None:intergenic | 45.0% | |
| ! | GGCAGTTTTTGAACCCATAC+CGG | - | tig0021982:30717-30736 | Msa1396000:intron | 45.0% |
| TGAACCCATACCGGATTATC+CGG | - | tig0021982:30726-30745 | Msa1396000:intron | 45.0% | |
| GTGGTGAATCGAAGTTGAAC+TGG | + | tig0021982:31243-31262 | None:intergenic | 45.0% | |
| GAGGGAAAGGTCAAAGATTG+AGG | + | tig0021982:31273-31292 | None:intergenic | 45.0% | |
| GACCTTTCCCTCTACTTATG+CGG | - | tig0021982:31281-31300 | Msa1396000:CDS | 45.0% | |
| ATCCGCATAAGTAGAGGGAA+AGG | + | tig0021982:31286-31305 | None:intergenic | 45.0% | |
| ! | CGTAAAGAGTAGCAGCCTTT+TGG | - | tig0021982:31435-31454 | Msa1396000:intron | 45.0% |
| CTCGATCAAGACAACAGGAA+TGG | + | tig0021982:31845-31864 | None:intergenic | 45.0% | |
| CTGTTCTCGATCAAGACAAC+AGG | + | tig0021982:31850-31869 | None:intergenic | 45.0% | |
| GTTGTCTTGATCGAGAACAG+TGG | - | tig0021982:31850-31869 | Msa1396000:intron | 45.0% | |
| GAAAATGTGTGCATGGTGAC+AGG | - | tig0021982:31983-32002 | Msa1396000:intron | 45.0% | |
| TGGTGACAGGTTCTTCCAAA+TGG | - | tig0021982:31996-32015 | Msa1396000:intron | 45.0% | |
| GGTGACAGGTTCTTCCAAAT+GGG | - | tig0021982:31997-32016 | Msa1396000:intron | 45.0% | |
| GGAATCCAAGCAATCCCATT+TGG | + | tig0021982:32014-32033 | None:intergenic | 45.0% | |
| ! | GTGATTGTTTGGACTAGGTG+AGG | + | tig0021982:32035-32054 | None:intergenic | 45.0% |
| TTCTTCCTCTCTGCAGTTCT+TGG | - | tig0021982:32243-32262 | Msa1396000:intron | 45.0% | |
| GAAAACCAAGAACTGCAGAG+AGG | + | tig0021982:32251-32270 | None:intergenic | 45.0% | |
| GTTCAGAAAGAAACGCGTGA+AGG | - | tig0021982:32349-32368 | Msa1396000:CDS | 45.0% | |
| GATATGCGTAAAGAGAAGCG+TGG | - | tig0021982:32382-32401 | Msa1396000:CDS | 45.0% | |
| AAAGGATGTGTCAGCAGTGA+TGG | + | tig0021982:32484-32503 | None:intergenic | 45.0% | |
| ATAAGGTGGAGGGTTAAGGG+CGG | - | tig0021982:28853-28872 | Msa1396000:three_prime_UTR | 50.0% | |
| ATCTATCGTCGCTTCCCTTC+CGG | - | tig0021982:28902-28921 | Msa1396000:three_prime_UTR | 50.0% | |
| GGGAAGAAATGGTTACCGGA+AGG | + | tig0021982:28920-28939 | None:intergenic | 50.0% | |
| !! | TTGTTTCCGCTTTGGGGACT+TGG | - | tig0021982:29676-29695 | Msa1396000:intron | 50.0% |
| !! | GACTTGGTGCATGTTTCGTC+TGG | - | tig0021982:29692-29711 | Msa1396000:CDS | 50.0% |
| GTGCATGTTTCGTCTGGCAT+AGG | - | tig0021982:29698-29717 | Msa1396000:CDS | 50.0% | |
| CCCCATCACAAGTATGGTCA+AGG | + | tig0021982:29733-29752 | None:intergenic | 50.0% | |
| GCCTTTCCCCATCACAAGTA+TGG | + | tig0021982:29739-29758 | None:intergenic | 50.0% | |
| ! | TACTTGTGATGGGGAAAGGC+GGG | - | tig0021982:29739-29758 | Msa1396000:intron | 50.0% |
| ! | GGTGACGATTAGTCCCTTTC+AGG | - | tig0021982:29806-29825 | Msa1396000:intron | 50.0% |
| !! | TGTTATGGTGTCGCGAGCAA+GGG | - | tig0021982:29947-29966 | Msa1396000:intron | 50.0% |
| !! | CTCCTGGTCTTATTGAAGGG+GGG | - | tig0021982:29997-30016 | Msa1396000:intron | 50.0% |
| TACCCCCCTTCAATAAGACC+AGG | + | tig0021982:30002-30021 | None:intergenic | 50.0% | |
| TGCATCTGGTGGAGAGAACT+GGG | + | tig0021982:30304-30323 | None:intergenic | 50.0% | |
| ATGCATCTGGTGGAGAGAAC+TGG | + | tig0021982:30305-30324 | None:intergenic | 50.0% | |
| GTTCTCTCCACCAGATGCAT+TGG | - | tig0021982:30305-30324 | Msa1396000:intron | 50.0% | |
| ! | GGCACCGGAATCGAAGTATT+TGG | - | tig0021982:30484-30503 | Msa1396000:intron | 50.0% |
| TGGCCACTGGACCAATTCAT+TGG | + | tig0021982:30766-30785 | None:intergenic | 50.0% | |
| ! | TACAAAAGCAGACTGGCCAC+TGG | + | tig0021982:30779-30798 | None:intergenic | 50.0% |
| ACAGGAATGGCAGAAGCCTA+GGG | + | tig0021982:31832-31851 | None:intergenic | 50.0% | |
| AACAGGAATGGCAGAAGCCT+AGG | + | tig0021982:31833-31852 | None:intergenic | 50.0% | |
| TCTTGATCGAGAACAGTGGG+AGG | - | tig0021982:31854-31873 | Msa1396000:intron | 50.0% | |
| GGACCGAATCCAAATCAGAG+AGG | - | tig0021982:32110-32129 | Msa1396000:intron | 50.0% | |
| ACATCACGTGTCTCCCAAGA+GGG | + | tig0021982:32325-32344 | None:intergenic | 50.0% | |
| TCTTGGGAGACACGTGATGT+CGG | - | tig0021982:32325-32344 | Msa1396000:CDS | 50.0% | |
| CAGAAAGAAACGCGTGAAGG+TGG | - | tig0021982:32352-32371 | Msa1396000:CDS | 50.0% | |
| !! | AGAAGCGTGGTGCAGGTTTT+CGG | - | tig0021982:32395-32414 | Msa1396000:exon | 50.0% |
| CTGCAATCCCTATTAGCGTG+CGG | - | tig0021982:32544-32563 | Msa1396000:intron | 50.0% | |
| TCCTATGCCGCACGCTAATA+GGG | + | tig0021982:32554-32573 | None:intergenic | 50.0% | |
| TTCCTATGCCGCACGCTAAT+AGG | + | tig0021982:32555-32574 | None:intergenic | 50.0% | |
| CATGCACCAAGTCCCCAAAG+CGG | + | tig0021982:29685-29704 | None:intergenic | 55.0% | |
| ! | ACTTGTGATGGGGAAAGGCG+GGG | - | tig0021982:29740-29759 | Msa1396000:intron | 55.0% |
| ! | TCCTGTGATGGTTTGCAGGG+TGG | - | tig0021982:29849-29868 | Msa1396000:intron | 55.0% |
| ACCACCCTGCAAACCATCAC+AGG | + | tig0021982:29853-29872 | None:intergenic | 55.0% | |
| ! | TGTGATGGTTTGCAGGGTGG+TGG | - | tig0021982:29852-29871 | Msa1396000:intron | 55.0% |
| GGAAGGGCCAAGACCTGTTA+TGG | - | tig0021982:29932-29951 | Msa1396000:intron | 55.0% | |
| CGCGACACCATAACAGGTCT+TGG | + | tig0021982:29942-29961 | None:intergenic | 55.0% | |
| CTTGCTCGCGACACCATAAC+AGG | + | tig0021982:29948-29967 | None:intergenic | 55.0% | |
| !! | CTGTTATGGTGTCGCGAGCA+AGG | - | tig0021982:29946-29965 | Msa1396000:intron | 55.0% |
| ATTGGTTAACCAGGTCCGGC+CGG | + | tig0021982:30748-30767 | None:intergenic | 55.0% | |
| TCATGCCTTGGCTGCTGCAT+TGG | - | tig0021982:30870-30889 | Msa1396000:intron | 55.0% | |
| ! | CCTTGGCTGCTGCATTGGTA+GGG | - | tig0021982:30875-30894 | Msa1396000:intron | 55.0% |
| GACATCACGTGTCTCCCAAG+AGG | + | tig0021982:32326-32345 | None:intergenic | 55.0% | |
| ! | CGTAAAGAGAAGCGTGGTGC+AGG | - | tig0021982:32388-32407 | Msa1396000:exon | 55.0% |
| TCCCTATTAGCGTGCGGCAT+AGG | - | tig0021982:32550-32569 | Msa1396000:intron | 55.0% | |
| TTGGGTGGGGGGGAGAAAGA+AGG | - | tig0021982:28790-28809 | Msa1396000:three_prime_UTR | 60.0% | |
| CCGGCCGGATAATCCGGTAT+GGG | + | tig0021982:30733-30752 | None:intergenic | 60.0% | |
| CCCATACCGGATTATCCGGC+CGG | - | tig0021982:30730-30749 | Msa1396000:intron | 60.0% | |
| TCCGGCCGGATAATCCGGTA+TGG | + | tig0021982:30734-30753 | None:intergenic | 60.0% | |
| ! | GCCTTGGCTGCTGCATTGGT+AGG | - | tig0021982:30874-30893 | Msa1396000:intron | 60.0% |
| CCCTACCAATGCAGCAGCCA+AGG | + | tig0021982:30878-30897 | None:intergenic | 60.0% | |
| ! | GTGATGGGGAAAGGCGGGGT+TGG | - | tig0021982:29744-29763 | Msa1396000:intron | 65.0% |
| !! | ATGGTGTCGCGAGCAAGGGC+TGG | - | tig0021982:29951-29970 | Msa1396000:intron | 65.0% |
| CCAGGTCCGGCCGGATAATC+CGG | + | tig0021982:30739-30758 | None:intergenic | 65.0% | |
| CCGGATTATCCGGCCGGACC+TGG | - | tig0021982:30736-30755 | Msa1396000:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021982 | gene | 28789 | 32791 | 28789 | ID=Msa1396000;Name=Msa1396000 |
| tig0021982 | mRNA | 28789 | 32791 | 28789 | ID=Msa1396000-mRNA-1;Parent=Msa1396000;Name=Msa1396000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=144|1|1|1|0.85|0.75|8|368|330 |
| tig0021982 | exon | 28789 | 29321 | 28789 | ID=Msa1396000-mRNA-1:exon:15253;Parent=Msa1396000-mRNA-1 |
| tig0021982 | exon | 29414 | 29575 | 29414 | ID=Msa1396000-mRNA-1:exon:15252;Parent=Msa1396000-mRNA-1 |
| tig0021982 | exon | 29677 | 29745 | 29677 | ID=Msa1396000-mRNA-1:exon:15251;Parent=Msa1396000-mRNA-1 |
| tig0021982 | exon | 31167 | 31431 | 31167 | ID=Msa1396000-mRNA-1:exon:15250;Parent=Msa1396000-mRNA-1 |
| tig0021982 | exon | 31526 | 31650 | 31526 | ID=Msa1396000-mRNA-1:exon:15249;Parent=Msa1396000-mRNA-1 |
| tig0021982 | exon | 31753 | 31860 | 31753 | ID=Msa1396000-mRNA-1:exon:15248;Parent=Msa1396000-mRNA-1 |
| tig0021982 | exon | 32308 | 32415 | 32308 | ID=Msa1396000-mRNA-1:exon:15247;Parent=Msa1396000-mRNA-1 |
| tig0021982 | exon | 32657 | 32791 | 32657 | ID=Msa1396000-mRNA-1:exon:15246;Parent=Msa1396000-mRNA-1 |
| tig0021982 | five_prime_UTR | 32657 | 32791 | 32657 | ID=Msa1396000-mRNA-1:five_prime_utr;Parent=Msa1396000-mRNA-1 |
| tig0021982 | five_prime_UTR | 32407 | 32415 | 32407 | ID=Msa1396000-mRNA-1:five_prime_utr;Parent=Msa1396000-mRNA-1 |
| tig0021982 | CDS | 32308 | 32406 | 32308 | ID=Msa1396000-mRNA-1:cds;Parent=Msa1396000-mRNA-1 |
| tig0021982 | CDS | 31753 | 31860 | 31753 | ID=Msa1396000-mRNA-1:cds;Parent=Msa1396000-mRNA-1 |
| tig0021982 | CDS | 31526 | 31650 | 31526 | ID=Msa1396000-mRNA-1:cds;Parent=Msa1396000-mRNA-1 |
| tig0021982 | CDS | 31167 | 31431 | 31167 | ID=Msa1396000-mRNA-1:cds;Parent=Msa1396000-mRNA-1 |
| tig0021982 | CDS | 29677 | 29745 | 29677 | ID=Msa1396000-mRNA-1:cds;Parent=Msa1396000-mRNA-1 |
| tig0021982 | CDS | 29414 | 29575 | 29414 | ID=Msa1396000-mRNA-1:cds;Parent=Msa1396000-mRNA-1 |
| tig0021982 | CDS | 29157 | 29321 | 29157 | ID=Msa1396000-mRNA-1:cds;Parent=Msa1396000-mRNA-1 |
| tig0021982 | three_prime_UTR | 28789 | 29156 | 28789 | ID=Msa1396000-mRNA-1:three_prime_utr;Parent=Msa1396000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
