AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162070 MtrunA17_Chr7g0257771 94.982 279 14 0 1 279 1 279 2.72e-167 464
Msa1162070 MtrunA17_Chr1g0173571 60.274 292 84 8 1 279 1 273 5.32e-100 293
Msa1162070 MtrunA17_Chr8g0377061 40.741 108 64 0 171 278 245 352 4.41e-16 77.4
Msa1162070 MtrunA17_Chr1g0153281 34.862 109 71 0 163 271 499 607 1.27e-12 67.8
Msa1162070 MtrunA17_Chr8g0376741 34.615 104 68 0 170 273 414 517 1.41e-12 67.4
Msa1162070 MtrunA17_Chr1g0203401 34.677 124 80 1 155 278 84 206 8.81e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162070 AT2G41870.1 53.901 282 96 7 9 279 13 271 4.91e-87 261
Msa1162070 AT3G57540.1 51.579 285 124 7 5 279 13 293 1.11e-82 251
Msa1162070 AT1G67590.1 43.519 108 61 0 171 278 229 336 2.37e-16 78.2
Msa1162070 AT1G30320.1 34.821 112 73 0 163 274 387 498 1.91e-14 73.6
Msa1162070 AT5G23750.3 36.842 114 71 1 165 278 114 226 4.55e-14 70.5
Msa1162070 AT5G23750.1 37.500 104 64 1 175 278 97 199 1.74e-13 68.2
Msa1162070 AT5G23750.2 37.500 104 64 1 175 278 96 198 1.95e-13 68.2
Msa1162070 AT3G48940.1 35.849 106 67 1 175 279 70 175 3.71e-13 66.6
Msa1162070 AT3G61260.1 35.354 99 64 0 175 273 107 205 4.34e-11 61.6

Find 92 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTATTTGTTCATCTTCT+TGG 0.075826 7_4:+52473694 None:intergenic
TTACTTTAATTAATATTTCT+TGG 0.210335 7_4:-52470727 Msa1162070:three_prime_UTR
CACTCTTTAACTAATTAAAA+AGG 0.214979 7_4:+52470967 None:intergenic
CTAAAATATGAATGAGATAA+TGG 0.299005 7_4:-52470614 Msa1162070:three_prime_UTR
TCATGAGGACTTATGTTGTT+AGG 0.306493 7_4:+52473492 None:intergenic
TGCTGATGCTTTCCTCTCTT+CGG 0.348171 7_4:+52471149 None:intergenic
TTTAGAGAAAATTCAGAAGT+AGG 0.357510 7_4:+52470632 None:intergenic
TTTGTTGGTGGTGGAGGAGG+TGG 0.373160 7_4:+52473633 None:intergenic
CATGAGGACTTATGTTGTTA+GGG 0.407701 7_4:+52473493 None:intergenic
CGGTTTGTTGGTGGTGGAGG+AGG 0.411956 7_4:+52473630 None:intergenic
TCACTTATAAACACTCCAAT+TGG 0.419385 7_4:+52470853 None:intergenic
CCGCGGTTTGTTGGTGGTGG+AGG 0.437166 7_4:+52473627 None:intergenic
TGGAAATGGTGAGAAGAGTT+TGG 0.439573 7_4:+52473882 None:intergenic
GTTTGGACCACAAAGAGAAA+TGG 0.444665 7_4:+52473899 None:intergenic
TTCAGAAGTAGGTAACCATT+AGG 0.449283 7_4:+52470643 None:intergenic
TATACTTAATGAAAACCAAT+TGG 0.455251 7_4:-52470868 Msa1162070:three_prime_UTR
TTCAATGCTCTTGTTCTAGC+AGG 0.458326 7_4:-52473528 Msa1162070:CDS
GGAGACGGAATAGGATCAAA+AGG 0.460665 7_4:+52473354 None:intergenic
AAGTTGCTAAGATTAATAAC+AGG 0.460825 7_4:-52473200 Msa1162070:CDS
CAATGGATGGGAGAGTGAAC+AGG 0.460888 7_4:-52473154 Msa1162070:CDS
CCGCCGCGGTTTGTTGGTGG+TGG 0.462987 7_4:+52473624 None:intergenic
AAGAACATGTGTCGGTGGAT+AGG 0.465960 7_4:-52473272 Msa1162070:CDS
AGAACATGTGTCGGTGGATA+GGG 0.467594 7_4:-52473271 Msa1162070:CDS
CCACACCAAACTGTTCCTAA+TGG 0.474772 7_4:-52470658 Msa1162070:three_prime_UTR
AGGTTCAGAAAGCTACTTCA+TGG 0.476454 7_4:-52473134 Msa1162070:CDS
CTGCTAGTAGGAGACGGAAT+AGG 0.476883 7_4:+52473345 None:intergenic
AACAAACCCTTTGGCGATTG+TGG 0.479682 7_4:-52473388 Msa1162070:CDS
GGTAACCATTAGGAACAGTT+TGG 0.482257 7_4:+52470653 None:intergenic
GAGATGACGAACGGTGGCTA+TGG 0.485036 7_4:+52473601 None:intergenic
GTTCAAGTGGTCAAGGTGGT+AGG 0.488213 7_4:-52473296 Msa1162070:CDS
GATGGAAGAAACAAACCCTT+TGG 0.499116 7_4:-52473397 Msa1162070:CDS
AGAGAAAAGAGCAAGAGCCT+TGG 0.499742 7_4:-52471211 Msa1162070:CDS
GGTGGAGGAGGTGGAAGTCG+AGG 0.504511 7_4:+52473642 None:intergenic
GCTAATCTTATGAGAGCAGT+TGG 0.511217 7_4:-52471084 Msa1162070:CDS
TTGATGAGGTTGTTAGTGAA+TGG 0.511495 7_4:+52473862 None:intergenic
ACATGTCATGCAGAGAAAGC+TGG 0.511997 7_4:-52471235 Msa1162070:intron
ATTAGTTAAAGAGTGCAAGA+TGG 0.512460 7_4:-52470959 Msa1162070:three_prime_UTR
TAGAGAAGAGGATCATATGA+TGG 0.513673 7_4:-52473415 Msa1162070:CDS
AGGTTGTTAGTGAATGGAAA+TGG 0.514033 7_4:+52473868 None:intergenic
ACAATAACAATAACAATTTG+AGG 0.516591 7_4:-52473443 Msa1162070:CDS
ATTGTGGTTGTTACACACTT+TGG 0.523249 7_4:-52470763 Msa1162070:three_prime_UTR
TTCACTATCTGTGCTAGCCA+TGG 0.524133 7_4:+52473575 None:intergenic
CCGTTCGTCATCTCTATCCA+TGG 0.526877 7_4:-52473592 Msa1162070:CDS
ACCACAAAGAGAAATGGAAA+AGG 0.526943 7_4:+52473905 None:intergenic
AGAGATGATGCTGTCATCAA+TGG 0.530421 7_4:-52473171 Msa1162070:CDS
TGGCCGCCGCGGTTTGTTGG+TGG 0.533581 7_4:+52473621 None:intergenic
GGTGGATAGGGTAAAGAAAG+AGG 0.544597 7_4:-52473259 Msa1162070:CDS
TTCAAGTGGTCAAGGTGGTA+GGG 0.545824 7_4:-52473295 Msa1162070:CDS
ATTAGCAATCTCAAGAACTC+TGG 0.548796 7_4:+52471101 None:intergenic
TCCTACTAGCAGAAGAACTA+CGG 0.555436 7_4:-52473334 Msa1162070:CDS
TGTTGCAACTTTGCAAGTGA+CGG 0.557497 7_4:+52470691 None:intergenic
TTTGAGGAGGATTAGAGAAG+AGG 0.558611 7_4:-52473427 Msa1162070:CDS
TTATCTACCACAATCGCCAA+AGG 0.563144 7_4:+52473381 None:intergenic
TTCATCTGATATATGGCTGG+TGG 0.565413 7_4:+52473719 None:intergenic
GTCGAGGTGGTGTTAAAGCA+TGG 0.566949 7_4:+52473658 None:intergenic
TTAGCTGTTTCATGTTCATG+AGG 0.567830 7_4:+52473477 None:intergenic
GCCGTAGTTCTTCTGCTAGT+AGG 0.572201 7_4:+52473333 None:intergenic
TATCTACCACAATCGCCAAA+GGG 0.572915 7_4:+52473382 None:intergenic
AGCAGAAGAACTACGGCTGG+TGG 0.576648 7_4:-52473327 Msa1162070:CDS
TACAATCTCAATAGTACGGA+GGG 0.579246 7_4:+52473770 None:intergenic
GAGGAAATTTCATTCAAGCA+TGG 0.581153 7_4:+52473818 None:intergenic
AGGAACAGTTTGGTGTGGTG+TGG 0.581154 7_4:+52470663 None:intergenic
GGAACAGTTTGGTGTGGTGT+GGG 0.584773 7_4:+52470664 None:intergenic
TGTTATGAAAGAACAAAGTG+AGG 0.586389 7_4:+52473799 None:intergenic
ACTAGCAGAAGAACTACGGC+TGG 0.586567 7_4:-52473330 Msa1162070:CDS
GGAGGAGGTGGAAGTCGAGG+TGG 0.587365 7_4:+52473645 None:intergenic
TGTGTACAATCTCAATAGTA+CGG 0.588709 7_4:+52473766 None:intergenic
CTCGAAGAAAAGCCGAAGAG+AGG 0.591953 7_4:-52471161 Msa1162070:CDS
ATGATGCTGTCATCAATGGA+TGG 0.593521 7_4:-52473167 Msa1162070:CDS
GGTGGAAGTGCACGTTCAAG+TGG 0.599716 7_4:-52473309 Msa1162070:CDS
GCTTAATTATTTGATCATTG+TGG 0.610985 7_4:-52470779 Msa1162070:three_prime_UTR
AGTGCACGTTCAAGTGGTCA+AGG 0.613039 7_4:-52473303 Msa1162070:CDS
GTTCTTCTGCTAGTAGGAGA+CGG 0.621337 7_4:+52473339 None:intergenic
AACGGTGGCTATGGCCGCCG+CGG 0.623345 7_4:+52473610 None:intergenic
GAGACGGAATAGGATCAAAA+GGG 0.627506 7_4:+52473355 None:intergenic
TTGAAGCAAAGATATCAGCT+TGG 0.636313 7_4:-52473233 Msa1162070:CDS
AATAGATTAGTGTTTGAATG+TGG 0.637549 7_4:-52470829 Msa1162070:three_prime_UTR
CCATTAGGAACAGTTTGGTG+TGG 0.637676 7_4:+52470658 None:intergenic
TGATGCTGTCATCAATGGAT+GGG 0.638726 7_4:-52473166 Msa1162070:CDS
TGGTAGGGAAGAACATGTGT+CGG 0.639869 7_4:-52473280 Msa1162070:CDS
ATAACAATAACAATTTGAGG+AGG 0.648714 7_4:-52473440 Msa1162070:CDS
AGAGAGGAAAGCATCAGCAG+AGG 0.652381 7_4:-52471145 Msa1162070:CDS
TAGGGAAGAACATGTGTCGG+TGG 0.674806 7_4:-52473277 Msa1162070:CDS
GGTGAGTGTACTAAGTGGTG+TGG 0.683723 7_4:-52470808 Msa1162070:three_prime_UTR
CCTCCACCACCAACAAACCG+CGG 0.696619 7_4:-52473627 Msa1162070:CDS
TTCATGGATGAAGAAAGTTG+AGG 0.696748 7_4:-52473118 Msa1162070:intron
CCATGGATAGAGATGACGAA+CGG 0.697357 7_4:+52473592 None:intergenic
GCACGTTCAAGTGGTCAAGG+TGG 0.706408 7_4:-52473300 Msa1162070:CDS
TGGATAGAGATGACGAACGG+TGG 0.707481 7_4:+52473595 None:intergenic
GTACAATCTCAATAGTACGG+AGG 0.722339 7_4:+52473769 None:intergenic
AATGTGGTGAGTGTACTAAG+TGG 0.741668 7_4:-52470813 Msa1162070:three_prime_UTR
CCACCACCAACAAACCGCGG+CGG 0.750976 7_4:-52473624 Msa1162070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTTATTATTCTTGAA+TGG - chr7_4:52471722-52471741 Msa1162070:intron 10.0%
!! TATATTAATACTAAGATAAA+AGG - chr7_4:52471759-52471778 Msa1162070:intron 10.0%
!! TAGAATTTATTGAATAATAA+AGG + chr7_4:52471866-52471885 None:intergenic 10.0%
!! TAATATATGGAAAAAAAATT+GGG + chr7_4:52472351-52472370 None:intergenic 10.0%
!! AGTATATTATATATAATCAA+TGG + chr7_4:52472382-52472401 None:intergenic 10.0%
!!! TTAATATTGAAAACTTTTTT+AGG - chr7_4:52473524-52473543 Msa1162070:CDS 10.0%
!! TTACTTTAATTAATATTTCT+TGG - chr7_4:52473812-52473831 Msa1162070:five_prime_UTR 10.0%
!! ATGAAAACTAAAAATAAAGT+AGG - chr7_4:52471577-52471596 Msa1162070:intron 15.0%
!! CTAATATATGGAAAAAAAAT+TGG + chr7_4:52472352-52472371 None:intergenic 15.0%
!! TATATAAAAATAGCATGATA+AGG - chr7_4:52473617-52473636 Msa1162070:CDS 15.0%
!! ACAATAACAATAACAATTTG+AGG - chr7_4:52471096-52471115 Msa1162070:CDS 20.0%
!!! GGTGAAAAATTATTTTCTAA+TGG - chr7_4:52471780-52471799 Msa1162070:intron 20.0%
!! AAATACAACAGAGATATAAA+GGG + chr7_4:52471910-52471929 None:intergenic 20.0%
!!! GATTTGATTGTAATTTGTAA+TGG + chr7_4:52472053-52472072 None:intergenic 20.0%
!! TTAAAAGGTAAATTCCAATT+GGG + chr7_4:52472088-52472107 None:intergenic 20.0%
!! TTTAAAAGGTAAATTCCAAT+TGG + chr7_4:52472089-52472108 None:intergenic 20.0%
!!! AATTGGAATTTACCTTTTAA+AGG - chr7_4:52472088-52472107 Msa1162070:intron 20.0%
!!! ATTGGAATTTACCTTTTAAA+GGG - chr7_4:52472089-52472108 Msa1162070:intron 20.0%
!!! AGACAAATTTTAGTTTGTTA+AGG - chr7_4:52472238-52472257 Msa1162070:intron 20.0%
!!! GACAAATTTTAGTTTGTTAA+GGG - chr7_4:52472239-52472258 Msa1162070:intron 20.0%
!! AATGGTTTAAGTCTAATATA+TGG + chr7_4:52472364-52472383 None:intergenic 20.0%
!! TATATATGTTAGTGTGTTTA+GGG + chr7_4:52472664-52472683 None:intergenic 20.0%
!! ATATATATGTTAGTGTGTTT+AGG + chr7_4:52472665-52472684 None:intergenic 20.0%
!!! AAAGTACTAATATCAAGTTT+TGG - chr7_4:52472754-52472773 Msa1162070:intron 20.0%
!! TGGATATGTTAGATTATTAT+CGG - chr7_4:52472833-52472852 Msa1162070:intron 20.0%
!! GATAAAACAAGTAATTTCAA+AGG + chr7_4:52472875-52472894 None:intergenic 20.0%
!! AAATGAACAATTCACTTTAT+AGG + chr7_4:52472897-52472916 None:intergenic 20.0%
!! GTAAAATTAATAAATGATCG+TGG + chr7_4:52472934-52472953 None:intergenic 20.0%
!!! AACTTAGAAGAAAGATTTTT+TGG + chr7_4:52473492-52473511 None:intergenic 20.0%
!! CACTCTTTAACTAATTAAAA+AGG + chr7_4:52473575-52473594 None:intergenic 20.0%
!! TATACTTAATGAAAACCAAT+TGG - chr7_4:52473671-52473690 Msa1162070:CDS 20.0%
!! CTAAAATATGAATGAGATAA+TGG - chr7_4:52473925-52473944 Msa1162070:five_prime_UTR 20.0%
! ATAACAATAACAATTTGAGG+AGG - chr7_4:52471099-52471118 Msa1162070:CDS 25.0%
! AAGTTGCTAAGATTAATAAC+AGG - chr7_4:52471339-52471358 Msa1162070:intron 25.0%
! TAATAATTAGTAGGCTGATT+AGG - chr7_4:52471532-52471551 Msa1162070:intron 25.0%
!!! TGTATTGATTAGTTCAAAGT+TGG + chr7_4:52471618-52471637 None:intergenic 25.0%
! AACTAATCAATACATGACAA+AGG - chr7_4:52471624-52471643 Msa1162070:intron 25.0%
! CAAATACAACAGAGATATAA+AGG + chr7_4:52471911-52471930 None:intergenic 25.0%
!! TGTAATTTGTAATGGCTAAT+TGG + chr7_4:52472045-52472064 None:intergenic 25.0%
! TAAAAGGTAAATTCCAATTG+GGG + chr7_4:52472087-52472106 None:intergenic 25.0%
! GAAAAAAAATGCTAGTAATG+AGG + chr7_4:52472142-52472161 None:intergenic 25.0%
! CAACTAACACATCTATAAAA+TGG - chr7_4:52472578-52472597 Msa1162070:intron 25.0%
! TGGCTAAAATTTCAAAGAAA+TGG + chr7_4:52472615-52472634 None:intergenic 25.0%
! ATATATGTTAGTGTGTTTAG+GGG + chr7_4:52472663-52472682 None:intergenic 25.0%
!!! CTTTTTTTAGACAAACGTTA+GGG + chr7_4:52472738-52472757 None:intergenic 25.0%
!!! ACTTTTTTTAGACAAACGTT+AGG + chr7_4:52472739-52472758 None:intergenic 25.0%
!!! AACATATCCATGATTTGTTA+TGG + chr7_4:52472823-52472842 None:intergenic 25.0%
! CAATAATTAGACAATAATGC+AGG + chr7_4:52473070-52473089 None:intergenic 25.0%
! TTGTTAAACAAAATGCTAGA+TGG + chr7_4:52473148-52473167 None:intergenic 25.0%
! AATTTGAGTATTTAACGTAG+AGG + chr7_4:52473176-52473195 None:intergenic 25.0%
!!! AATGCTTTGTTTTACTACAA+TGG + chr7_4:52473216-52473235 None:intergenic 25.0%
!!! CATGACATGTGATTTTTTTT+GGG + chr7_4:52473294-52473313 None:intergenic 25.0%
!!! CTTTTTTAGGCACAAAAAAA+AGG - chr7_4:52473537-52473556 Msa1162070:CDS 25.0%
! AATAGATTAGTGTTTGAATG+TGG - chr7_4:52473710-52473729 Msa1162070:CDS 25.0%
! GCTTAATTATTTGATCATTG+TGG - chr7_4:52473760-52473779 Msa1162070:exon 25.0%
! TTTAGAGAAAATTCAGAAGT+AGG + chr7_4:52473910-52473929 None:intergenic 25.0%
!!! ATAGTGTGTGTATTTTGATG+AGG + chr7_4:52470694-52470713 None:intergenic 30.0%
TGTTATGAAAGAACAAAGTG+AGG + chr7_4:52470743-52470762 None:intergenic 30.0%
TGTGTACAATCTCAATAGTA+CGG + chr7_4:52470776-52470795 None:intergenic 30.0%
!! CTTGGTTTTCATCTGATATA+TGG + chr7_4:52470830-52470849 None:intergenic 30.0%
! CTGTTATTTGTTCATCTTCT+TGG + chr7_4:52470848-52470867 None:intergenic 30.0%
CAGCATGAAATACATAACAA+CGG + chr7_4:52471509-52471528 None:intergenic 30.0%
TTGTTATGTATTTCATGCTG+TGG - chr7_4:52471509-52471528 Msa1162070:intron 30.0%
ATGCTGTGGTAATAATTAGT+AGG - chr7_4:52471523-52471542 Msa1162070:intron 30.0%
TGATTTAGACGTTAAACCTT+TGG + chr7_4:52471976-52471995 None:intergenic 30.0%
AAAATGATGTTAAGCCAACA+CGG - chr7_4:52472010-52472029 Msa1162070:intron 30.0%
GTATTTCATGTTTCCTTACT+CGG - chr7_4:52472482-52472501 Msa1162070:intron 30.0%
TTATAGATGTGTTAGTTGCA+CGG + chr7_4:52472576-52472595 None:intergenic 30.0%
AAATTTCAAAGAAATGGCTC+AGG + chr7_4:52472609-52472628 None:intergenic 30.0%
!!! AATATCAAGTTTTGGTGTTG+AGG - chr7_4:52472762-52472781 Msa1162070:intron 30.0%
!! CATGATTTGTTATGGACTTA+TGG + chr7_4:52472815-52472834 None:intergenic 30.0%
CATAAGTCCATAACAAATCA+TGG - chr7_4:52472813-52472832 Msa1162070:intron 30.0%
! TTTTCCAATGACAGCAAAAA+GGG - chr7_4:52473104-52473123 Msa1162070:intron 30.0%
!!! GCATGACATGTGATTTTTTT+TGG + chr7_4:52473295-52473314 None:intergenic 30.0%
!!! TAGAAGAAAGATTTTTTGGC+AGG + chr7_4:52473488-52473507 None:intergenic 30.0%
! ATTAGTTAAAGAGTGCAAGA+TGG - chr7_4:52473580-52473599 Msa1162070:CDS 30.0%
TCACTTATAAACACTCCAAT+TGG + chr7_4:52473689-52473708 None:intergenic 30.0%
! TCCTTTTCCATTTCTCTTTG+TGG - chr7_4:52470633-52470652 Msa1162070:three_prime_UTR 35.0%
ACCACAAAGAGAAATGGAAA+AGG + chr7_4:52470637-52470656 None:intergenic 35.0%
AGGTTGTTAGTGAATGGAAA+TGG + chr7_4:52470674-52470693 None:intergenic 35.0%
TTGATGAGGTTGTTAGTGAA+TGG + chr7_4:52470680-52470699 None:intergenic 35.0%
GAGGAAATTTCATTCAAGCA+TGG + chr7_4:52470724-52470743 None:intergenic 35.0%
TACAATCTCAATAGTACGGA+GGG + chr7_4:52470772-52470791 None:intergenic 35.0%
! GTTTTCATCTGATATATGGC+TGG + chr7_4:52470826-52470845 None:intergenic 35.0%
CATGAGGACTTATGTTGTTA+GGG + chr7_4:52471049-52471068 None:intergenic 35.0%
TCATGAGGACTTATGTTGTT+AGG + chr7_4:52471050-52471069 None:intergenic 35.0%
! TTAGCTGTTTCATGTTCATG+AGG + chr7_4:52471065-52471084 None:intergenic 35.0%
TAGAGAAGAGGATCATATGA+TGG - chr7_4:52471124-52471143 Msa1162070:CDS 35.0%
TTGAAGCAAAGATATCAGCT+TGG - chr7_4:52471306-52471325 Msa1162070:intron 35.0%
TTCATGGATGAAGAAAGTTG+AGG - chr7_4:52471421-52471440 Msa1162070:intron 35.0%
! TCACGATGTTATTTGCATGT+AGG - chr7_4:52471470-52471489 Msa1162070:intron 35.0%
TGGTTGTTGAGTAACCTAAT+TGG - chr7_4:52471800-52471819 Msa1162070:intron 35.0%
GGTTGTTGAGTAACCTAATT+GGG - chr7_4:52471801-52471820 Msa1162070:intron 35.0%
GTTGTTGAGTAACCTAATTG+GGG - chr7_4:52471802-52471821 Msa1162070:intron 35.0%
TGTATTTGCATTGCATGCAT+TGG - chr7_4:52471923-52471942 Msa1162070:intron 35.0%
GTACTATGTTATCAAGCTCT+AGG + chr7_4:52471954-52471973 None:intergenic 35.0%
! GCTTGATAACATAGTACCAA+AGG - chr7_4:52471957-52471976 Msa1162070:intron 35.0%
AAATGATGTTAAGCCAACAC+GGG - chr7_4:52472011-52472030 Msa1162070:intron 35.0%
CCTACACAATTCCCTTTAAA+AGG + chr7_4:52472103-52472122 None:intergenic 35.0%
!! CCTTTTAAAGGGAATTGTGT+AGG - chr7_4:52472100-52472119 Msa1162070:intron 35.0%
TTTAAAGGGAATTGTGTAGG+AGG - chr7_4:52472103-52472122 Msa1162070:intron 35.0%
!! TAGAAGGGTGCTTACATATA+GGG + chr7_4:52472413-52472432 None:intergenic 35.0%
!! ATAGAAGGGTGCTTACATAT+AGG + chr7_4:52472414-52472433 None:intergenic 35.0%
ACTCTTTGCCTCTAATAGAA+GGG + chr7_4:52472428-52472447 None:intergenic 35.0%
!! GCAAAGAGTGCTTACATATA+GGG - chr7_4:52472439-52472458 Msa1162070:intron 35.0%
! AATCCTCTTTTGCATTGCAT+TGG - chr7_4:52472971-52472990 Msa1162070:intron 35.0%
TTTCCAATGCAATGCAAAAG+AGG + chr7_4:52472977-52472996 None:intergenic 35.0%
! CTTTTCCAATGACAGCAAAA+AGG - chr7_4:52473103-52473122 Msa1162070:intron 35.0%
TTTCCAATGACAGCAAAAAG+GGG - chr7_4:52473105-52473124 Msa1162070:intron 35.0%
TAGATGGTGAGAAACATGTT+TGG + chr7_4:52473132-52473151 None:intergenic 35.0%
!! CAAAGCATTGACTAACAACT+CGG - chr7_4:52473227-52473246 Msa1162070:CDS 35.0%
!! AAAGCATTGACTAACAACTC+GGG - chr7_4:52473228-52473247 Msa1162070:CDS 35.0%
ATTAGCAATCTCAAGAACTC+TGG + chr7_4:52473441-52473460 None:intergenic 35.0%
!!! AAGAAAGATTTTTTGGCAGG+AGG + chr7_4:52473485-52473504 None:intergenic 35.0%
ATTGTGGTTGTTACACACTT+TGG - chr7_4:52473776-52473795 Msa1162070:five_prime_UTR 35.0%
TTCAGAAGTAGGTAACCATT+AGG + chr7_4:52473899-52473918 None:intergenic 35.0%
GTTTGGACCACAAAGAGAAA+TGG + chr7_4:52470643-52470662 None:intergenic 40.0%
TGGAAATGGTGAGAAGAGTT+TGG + chr7_4:52470660-52470679 None:intergenic 40.0%
GTACAATCTCAATAGTACGG+AGG + chr7_4:52470773-52470792 None:intergenic 40.0%
TTCATCTGATATATGGCTGG+TGG + chr7_4:52470823-52470842 None:intergenic 40.0%
TTCAATGCTCTTGTTCTAGC+AGG - chr7_4:52471011-52471030 Msa1162070:three_prime_UTR 40.0%
TTTGAGGAGGATTAGAGAAG+AGG - chr7_4:52471112-52471131 Msa1162070:CDS 40.0%
GATGGAAGAAACAAACCCTT+TGG - chr7_4:52471142-52471161 Msa1162070:CDS 40.0%
TATCTACCACAATCGCCAAA+GGG + chr7_4:52471160-52471179 None:intergenic 40.0%
TTATCTACCACAATCGCCAA+AGG + chr7_4:52471161-52471180 None:intergenic 40.0%
GAGACGGAATAGGATCAAAA+GGG + chr7_4:52471187-52471206 None:intergenic 40.0%
TCCTACTAGCAGAAGAACTA+CGG - chr7_4:52471205-52471224 Msa1162070:CDS 40.0%
AGAGATGATGCTGTCATCAA+TGG - chr7_4:52471368-52471387 Msa1162070:intron 40.0%
ATGATGCTGTCATCAATGGA+TGG - chr7_4:52471372-52471391 Msa1162070:intron 40.0%
TGATGCTGTCATCAATGGAT+GGG - chr7_4:52471373-52471392 Msa1162070:intron 40.0%
AGGTTCAGAAAGCTACTTCA+TGG - chr7_4:52471405-52471424 Msa1162070:intron 40.0%
AGATTGCCTAGCTTGAGTTA+CGG - chr7_4:52471680-52471699 Msa1162070:intron 40.0%
TAACCTAATTGGGGTGTGTA+GGG - chr7_4:52471811-52471830 Msa1162070:intron 40.0%
! AGACTTACTAGCTAGTTTCC+TGG + chr7_4:52471838-52471857 None:intergenic 40.0%
TTCATTCTCTAACACACCGT+AGG - chr7_4:52472276-52472295 Msa1162070:intron 40.0%
TCATTCTCTAACACACCGTA+GGG - chr7_4:52472277-52472296 Msa1162070:intron 40.0%
AGTCACACTCATCATACAGT+GGG + chr7_4:52472308-52472327 None:intergenic 40.0%
TAGTCACACTCATCATACAG+TGG + chr7_4:52472309-52472328 None:intergenic 40.0%
TGTAAGCACCCTTCTATTAG+AGG - chr7_4:52472417-52472436 Msa1162070:intron 40.0%
CACTCTTTGCCTCTAATAGA+AGG + chr7_4:52472429-52472448 None:intergenic 40.0%
!! GGCAAAGAGTGCTTACATAT+AGG - chr7_4:52472438-52472457 Msa1162070:intron 40.0%
! AGAGTGCTTACATATAGGGA+CGG - chr7_4:52472443-52472462 Msa1162070:intron 40.0%
! TTAGAGTACCATCAACCGAT+AGG + chr7_4:52472508-52472527 None:intergenic 40.0%
! TCAGACTTTTGATGTCGATG+TGG + chr7_4:52472635-52472654 None:intergenic 40.0%
AAGCCAATAACCTCATTACG+TGG - chr7_4:52473008-52473027 Msa1162070:intron 40.0%
ACAACAGACTCCTATAGCTT+TGG - chr7_4:52473044-52473063 Msa1162070:intron 40.0%
ATAATGCAGGCCAAAGCTAT+AGG + chr7_4:52473057-52473076 None:intergenic 40.0%
!!! TTTGTTTTGCGTCTTCTCCA+AGG + chr7_4:52473348-52473367 None:intergenic 40.0%
GGCAAAAAGAGGAACTAAAG+TGG - chr7_4:52473415-52473434 Msa1162070:CDS 40.0%
GCTAATCTTATGAGAGCAGT+TGG - chr7_4:52473455-52473474 Msa1162070:CDS 40.0%
AATGTGGTGAGTGTACTAAG+TGG - chr7_4:52473726-52473745 Msa1162070:CDS 40.0%
TGTTGCAACTTTGCAAGTGA+CGG + chr7_4:52473851-52473870 None:intergenic 40.0%
GGTAACCATTAGGAACAGTT+TGG + chr7_4:52473889-52473908 None:intergenic 40.0%
CCATGGATAGAGATGACGAA+CGG + chr7_4:52470950-52470969 None:intergenic 45.0%
TTCACTATCTGTGCTAGCCA+TGG + chr7_4:52470967-52470986 None:intergenic 45.0%
AACAAACCCTTTGGCGATTG+TGG - chr7_4:52471151-52471170 Msa1162070:CDS 45.0%
GGAGACGGAATAGGATCAAA+AGG + chr7_4:52471188-52471207 None:intergenic 45.0%
GTTCTTCTGCTAGTAGGAGA+CGG + chr7_4:52471203-52471222 None:intergenic 45.0%
TTCAAGTGGTCAAGGTGGTA+GGG - chr7_4:52471244-52471263 Msa1162070:intron 45.0%
TGGTAGGGAAGAACATGTGT+CGG - chr7_4:52471259-52471278 Msa1162070:intron 45.0%
! AAGAACATGTGTCGGTGGAT+AGG - chr7_4:52471267-52471286 Msa1162070:intron 45.0%
! AGAACATGTGTCGGTGGATA+GGG - chr7_4:52471268-52471287 Msa1162070:intron 45.0%
GGTGGATAGGGTAAAGAAAG+AGG - chr7_4:52471280-52471299 Msa1162070:intron 45.0%
TTACCACCGTAACTCAAGCT+AGG + chr7_4:52471689-52471708 None:intergenic 45.0%
GTAACCTAATTGGGGTGTGT+AGG - chr7_4:52471810-52471829 Msa1162070:intron 45.0%
AACCTAATTGGGGTGTGTAG+GGG - chr7_4:52471812-52471831 Msa1162070:intron 45.0%
ATTGGCTATGTTTCCCGTGT+TGG + chr7_4:52472027-52472046 None:intergenic 45.0%
TCTTCAAGAGACACCCCAAT+TGG - chr7_4:52472071-52472090 Msa1162070:intron 45.0%
AGGGAATTGTGTAGGAGGTT+TGG - chr7_4:52472108-52472127 Msa1162070:intron 45.0%
GGGAATTGTGTAGGAGGTTT+GGG - chr7_4:52472109-52472128 Msa1162070:intron 45.0%
TGCTTACATATAGGGACGGA+GGG + chr7_4:52472447-52472466 None:intergenic 45.0%
! AGGGTGCTTACATATAGGGA+CGG + chr7_4:52472409-52472428 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG - chr7_4:52472447-52472466 Msa1162070:intron 45.0%
TGTTTCCTTACTCGGCCTAT+CGG - chr7_4:52472490-52472509 Msa1162070:intron 45.0%
CCACCACGTAATGAGGTTAT+TGG + chr7_4:52473014-52473033 None:intergenic 45.0%
CCAATAACCTCATTACGTGG+TGG - chr7_4:52473011-52473030 Msa1162070:intron 45.0%
ATAACCTCATTACGTGGTGG+TGG - chr7_4:52473014-52473033 Msa1162070:intron 45.0%
AAAACCACCACCACGTAATG+AGG + chr7_4:52473021-52473040 None:intergenic 45.0%
ACATGTCATGCAGAGAAAGC+TGG - chr7_4:52473304-52473323 Msa1162070:CDS 45.0%
AGAGAAAAGAGCAAGAGCCT+TGG - chr7_4:52473328-52473347 Msa1162070:CDS 45.0%
TGCTGATGCTTTCCTCTCTT+CGG + chr7_4:52473393-52473412 None:intergenic 45.0%
! CCATTAGGAACAGTTTGGTG+TGG + chr7_4:52473884-52473903 None:intergenic 45.0%
CCACACCAAACTGTTCCTAA+TGG - chr7_4:52473881-52473900 Msa1162070:five_prime_UTR 45.0%
! GTCGAGGTGGTGTTAAAGCA+TGG + chr7_4:52470884-52470903 None:intergenic 50.0%
TGGATAGAGATGACGAACGG+TGG + chr7_4:52470947-52470966 None:intergenic 50.0%
CCGTTCGTCATCTCTATCCA+TGG - chr7_4:52470947-52470966 Msa1162070:three_prime_UTR 50.0%
CTGCTAGTAGGAGACGGAAT+AGG + chr7_4:52471197-52471216 None:intergenic 50.0%
GCCGTAGTTCTTCTGCTAGT+AGG + chr7_4:52471209-52471228 None:intergenic 50.0%
ACTAGCAGAAGAACTACGGC+TGG - chr7_4:52471209-52471228 Msa1162070:CDS 50.0%
AGTGCACGTTCAAGTGGTCA+AGG - chr7_4:52471236-52471255 Msa1162070:intron 50.0%
GTTCAAGTGGTCAAGGTGGT+AGG - chr7_4:52471243-52471262 Msa1162070:intron 50.0%
TAGGGAAGAACATGTGTCGG+TGG - chr7_4:52471262-52471281 Msa1162070:intron 50.0%
CAATGGATGGGAGAGTGAAC+AGG - chr7_4:52471385-52471404 Msa1162070:intron 50.0%
TTGCCTAGCTTGAGTTACGG+TGG - chr7_4:52471683-52471702 Msa1162070:intron 50.0%
TCTCTAACACACCGTAGGGA+CGG - chr7_4:52472281-52472300 Msa1162070:intron 50.0%
GTGCTTACATATAGGGACGG+AGG + chr7_4:52472446-52472465 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG - chr7_4:52472446-52472465 Msa1162070:intron 50.0%
ATCAACCGATAGGCCGAGTA+AGG + chr7_4:52472498-52472517 None:intergenic 50.0%
! TTACTCGGCCTATCGGTTGA+TGG - chr7_4:52472497-52472516 Msa1162070:intron 50.0%
! CACGGATTGTTAGAGACGTG+CGG + chr7_4:52472535-52472554 None:intergenic 50.0%
TCTAACAATCCGTGCGTCCT+GGG - chr7_4:52472541-52472560 Msa1162070:intron 50.0%
!! GGACCCCTTTTTGCTGTCAT+TGG + chr7_4:52473111-52473130 None:intergenic 50.0%
CTCGAAGAAAAGCCGAAGAG+AGG - chr7_4:52473378-52473397 Msa1162070:CDS 50.0%
!! AGAGAGGAAAGCATCAGCAG+AGG - chr7_4:52473394-52473413 Msa1162070:CDS 50.0%
GCATCAGCAGAGGCAAAAAG+AGG - chr7_4:52473404-52473423 Msa1162070:CDS 50.0%
GGTGAGTGTACTAAGTGGTG+TGG - chr7_4:52473731-52473750 Msa1162070:CDS 50.0%
!! GGAACAGTTTGGTGTGGTGT+GGG + chr7_4:52473878-52473897 None:intergenic 50.0%
!! AGGAACAGTTTGGTGTGGTG+TGG + chr7_4:52473879-52473898 None:intergenic 50.0%
!! TTTGTTGGTGGTGGAGGAGG+TGG + chr7_4:52470909-52470928 None:intergenic 55.0%
GAGATGACGAACGGTGGCTA+TGG + chr7_4:52470941-52470960 None:intergenic 55.0%
AGCAGAAGAACTACGGCTGG+TGG - chr7_4:52471212-52471231 Msa1162070:CDS 55.0%
! GGTGGAAGTGCACGTTCAAG+TGG - chr7_4:52471230-52471249 Msa1162070:intron 55.0%
GCACGTTCAAGTGGTCAAGG+TGG - chr7_4:52471239-52471258 Msa1162070:intron 55.0%
ATACAGTGGGTCCGTCCCTA+CGG + chr7_4:52472295-52472314 None:intergenic 55.0%
CTCTAACAATCCGTGCGTCC+TGG - chr7_4:52472540-52472559 Msa1162070:intron 55.0%
AGAGTTGAACCCAGGACGCA+CGG + chr7_4:52472553-52472572 None:intergenic 55.0%
TTGCACGGAGAGTTGAACCC+AGG + chr7_4:52472561-52472580 None:intergenic 55.0%
!! CGGTTTGTTGGTGGTGGAGG+AGG + chr7_4:52470912-52470931 None:intergenic 60.0%
CCTCCACCACCAACAAACCG+CGG - chr7_4:52470912-52470931 Msa1162070:three_prime_UTR 60.0%
GGCCCCTACACACCCCAATT+AGG + chr7_4:52471817-52471836 None:intergenic 60.0%
AATTGGGGTGTGTAGGGGCC+AGG - chr7_4:52471817-52471836 Msa1162070:intron 60.0%
GGAGGAGGTGGAAGTCGAGG+TGG + chr7_4:52470897-52470916 None:intergenic 65.0%
GGTGGAGGAGGTGGAAGTCG+AGG + chr7_4:52470900-52470919 None:intergenic 65.0%
!! CCGCGGTTTGTTGGTGGTGG+AGG + chr7_4:52470915-52470934 None:intergenic 65.0%
CCACCACCAACAAACCGCGG+CGG - chr7_4:52470915-52470934 Msa1162070:three_prime_UTR 65.0%
CTATGGCCGCCGCGGTTTGT+TGG + chr7_4:52470924-52470943 None:intergenic 65.0%
!! CCGCCGCGGTTTGTTGGTGG+TGG + chr7_4:52470918-52470937 None:intergenic 70.0%
!! TGGCCGCCGCGGTTTGTTGG+TGG + chr7_4:52470921-52470940 None:intergenic 70.0%
AACGGTGGCTATGGCCGCCG+CGG + chr7_4:52470932-52470951 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 52470600 52473961 52470600 ID=Msa1162070;Name=Msa1162070
chr7_4 mRNA 52470600 52473961 52470600 ID=Msa1162070-mRNA-1;Parent=Msa1162070;Name=Msa1162070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=195|1|1|1|1|1|2|453|279
chr7_4 exon 52470600 52471244 52470600 ID=Msa1162070-mRNA-1:exon:15063;Parent=Msa1162070-mRNA-1
chr7_4 exon 52473119 52473961 52473119 ID=Msa1162070-mRNA-1:exon:15062;Parent=Msa1162070-mRNA-1
chr7_4 five_prime_UTR 52473767 52473961 52473767 ID=Msa1162070-mRNA-1:five_prime_utr;Parent=Msa1162070-mRNA-1
chr7_4 CDS 52473119 52473766 52473119 ID=Msa1162070-mRNA-1:cds;Parent=Msa1162070-mRNA-1
chr7_4 CDS 52471053 52471244 52471053 ID=Msa1162070-mRNA-1:cds;Parent=Msa1162070-mRNA-1
chr7_4 three_prime_UTR 52470600 52471052 52470600 ID=Msa1162070-mRNA-1:three_prime_utr;Parent=Msa1162070-mRNA-1
Gene Sequence

>Msa1162070

ATGTTGAATAATAATCTAAATACTTCCACCAGCCATATATCAGATGAAAACCAAGAAGATGAACAAATAACAGAAATAAGAGAAATCCATGCTTTAACACCACCTCGACTTCCACCTCCTCCACCACCAACAAACCGCGGCGGCCATAGCCACCGTTCGTCATCTCTATCCATGGCTAGCACAGATAGTGAAAACTTCACAACTATAAGCAGAGAATTCAATGCTCTTGTTCTAGCAGGATCAACTGTTGACCCTAACAACATAAGTCCTCATGAACATGAAACAGCTAACAGTAACAATAACAATAACAATAACAATTTGAGGAGGATTAGAGAAGAGGATCATATGATGGAAGAAACAAACCCTTTGGCGATTGTGGTAGATAACAACCCTTTTGATCCTATTCCGTCTCCTACTAGCAGAAGAACTACGGCTGGTGGAAGTGCACGTTCAAGTGGTCAAGGTGGTAGGGAAGAACATGTGTCGGTGGATAGGGTAAAGAAAGAGGAAGTTGAAGCAAAGATATCAGCTTGGCAGAATGCTAAAGTTGCTAAGATTAATAACAGGTTCAAGAGAGATGATGCTGTCATCAATGGATGGGAGAGTGAACAGGTTCAGAAAGCTACTTCATGGATGAAGAAAGTTGAGAGAAAGCTGGAAGAGAAAAGAGCAAGAGCCTTGGAGAAGACGCAAAACAAAATAGCGAAAGCTCGAAGAAAAGCCGAAGAGAGGAAAGCATCAGCAGAGGCAAAAAGAGGAACTAAAGTGGCCAGAGTTCTTGAGATTGCTAATCTTATGAGAGCAGTTGGAAGACCTCCTGCCAAAAAATCTTTCTTCTAA

Protein sequence

>Msa1162070

MLNNNLNTSTSHISDENQEDEQITEIREIHALTPPRLPPPPPPTNRGGHSHRSSSLSMASTDSENFTTISREFNALVLAGSTVDPNNISPHEHETANSNNNNNNNNLRRIREEDHMMEETNPLAIVVDNNPFDPIPSPTSRRTTAGGSARSSGQGGREEHVSVDRVKKEEVEAKISAWQNAKVAKINNRFKRDDAVINGWESEQVQKATSWMKKVERKLEEKRARALEKTQNKIAKARRKAEERKASAEAKRGTKVARVLEIANLMRAVGRPPAKKSFF*